# This file is automatically @generated by Cargo. # It is not intended for manual editing. version = 3 [[package]] name = "aho-corasick" version = "1.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ea5d730647d4fadd988536d06fecce94b7b4f2a7efdae548f1cf4b63205518ab" dependencies = [ "memchr", ] [[package]] name = "bam-builder" version = "1.0.0" dependencies = [ "derive_builder", "rand", "rust-htslib", "tempfile", ] [[package]] name = "bio-types" version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9d45749b87f21808051025e9bf714d14ff4627f9d8ca967eade6946ea769aa4a" dependencies = [ "derive-new", "lazy_static", "regex", "strum_macros", "thiserror", ] [[package]] name = "bitflags" version = "1.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" [[package]] name = "bitflags" version = "2.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b4682ae6287fcf752ecaabbfcc7b6f9b72aa33933dc23a554d853aea8eea8635" [[package]] name = "byteorder" version = "1.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610" [[package]] name = "bzip2-sys" version = "0.1.11+1.0.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "736a955f3fa7875102d57c82b8cac37ec45224a07fd32d58f9f7a186b6cd4cdc" dependencies = [ "cc", "libc", "pkg-config", ] [[package]] name = "cc" version = "1.0.83" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f1174fb0b6ec23863f8b971027804a42614e347eafb0a95bf0b12cdae21fc4d0" dependencies = [ "jobserver", "libc", ] [[package]] name = "cfg-if" version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "cmake" version = "0.1.50" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a31c789563b815f77f4250caee12365734369f942439b7defd71e18a48197130" dependencies = [ "cc", ] [[package]] name = "curl-sys" version = "0.4.66+curl-8.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "70c44a72e830f0e40ad90dda8a6ab6ed6314d39776599a58a2e5e37fbc6db5b9" dependencies = [ "cc", "libc", "libz-sys", "openssl-sys", "pkg-config", "vcpkg", "windows-sys", ] [[package]] name = "custom_derive" version = "0.1.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9" [[package]] name = "darling" version = "0.14.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7b750cb3417fd1b327431a470f388520309479ab0bf5e323505daf0290cd3850" dependencies = [ "darling_core", "darling_macro", ] [[package]] name = "darling_core" version = "0.14.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "109c1ca6e6b7f82cc233a97004ea8ed7ca123a9af07a8230878fcfda9b158bf0" dependencies = [ "fnv", "ident_case", "proc-macro2", "quote", "strsim", "syn 1.0.109", ] [[package]] name = "darling_macro" version = "0.14.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a4aab4dbc9f7611d8b55048a3a16d2d010c2c8334e46304b40ac1cc14bf3b48e" dependencies = [ "darling_core", "quote", "syn 1.0.109", ] [[package]] name = "derive-new" version = "0.5.9" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3418329ca0ad70234b9735dc4ceed10af4df60eff9c8e7b06cb5e520d92c3535" dependencies = [ "proc-macro2", "quote", "syn 1.0.109", ] [[package]] name = "derive_builder" version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8d67778784b508018359cbc8696edb3db78160bab2c2a28ba7f56ef6932997f8" dependencies = [ "derive_builder_macro", ] [[package]] name = "derive_builder_core" version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c11bdc11a0c47bc7d37d582b5285da6849c96681023680b906673c5707af7b0f" dependencies = [ "darling", "proc-macro2", "quote", "syn 1.0.109", ] [[package]] name = "derive_builder_macro" version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ebcda35c7a396850a55ffeac740804b40ffec779b98fffbb1738f4033f0ee79e" dependencies = [ "derive_builder_core", "syn 1.0.109", ] [[package]] name = "errno" version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "136526188508e25c6fef639d7927dfb3e0e3084488bf202267829cf7fc23dbdd" dependencies = [ "errno-dragonfly", "libc", "windows-sys", ] [[package]] name = "errno-dragonfly" version = "0.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "aa68f1b12764fab894d2755d2518754e71b4fd80ecfb822714a1206c2aab39bf" dependencies = [ "cc", "libc", ] [[package]] name = "fastrand" version = "2.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "25cbce373ec4653f1a01a31e8a5e5ec0c622dc27ff9c4e6606eefef5cbbed4a5" [[package]] name = "fnv" version = "1.0.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1" [[package]] name = "form_urlencoded" version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a62bc1cf6f830c2ec14a513a9fb124d0a213a629668a4186f329db21fe045652" dependencies = [ "percent-encoding", ] [[package]] name = "fs-utils" version = "1.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6fc7a9dc005c944c98a935e7fd626faf5bf7e5a609f94bc13e42fc4a02e52593" dependencies = [ "quick-error", ] [[package]] name = "getrandom" version = "0.2.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "be4136b2a15dd319360be1c07d9933517ccf0be8f16bf62a3bee4f0d618df427" dependencies = [ "cfg-if", "libc", "wasi", ] [[package]] name = "glob" version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d2fabcfbdc87f4758337ca535fb41a6d701b65693ce38287d856d1674551ec9b" [[package]] name = "heck" version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" [[package]] name = "hts-sys" version = "2.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "deebfb779c734d542e7f14c298597914b9b5425e4089aef482eacb5cab941915" dependencies = [ "bzip2-sys", "cc", "curl-sys", "fs-utils", "glob", "libz-sys", "lzma-sys", "openssl-sys", ] [[package]] name = "ident_case" version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b9e0384b61958566e926dc50660321d12159025e767c18e043daf26b70104c39" [[package]] name = "idna" version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7d20d6b07bfbc108882d88ed8e37d39636dcc260e15e30c45e6ba089610b917c" dependencies = [ "unicode-bidi", "unicode-normalization", ] [[package]] name = "ieee754" version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c" [[package]] name = "jobserver" version = "0.1.26" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "936cfd212a0155903bcbc060e316fb6cc7cbf2e1907329391ebadc1fe0ce77c2" dependencies = [ "libc", ] [[package]] name = "lazy_static" version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "libc" version = "0.2.148" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9cdc71e17332e86d2e1d38c1f99edcb6288ee11b815fb1a4b049eaa2114d369b" [[package]] name = "libz-sys" version = "1.1.12" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d97137b25e321a73eef1418d1d5d2eda4d77e12813f8e6dead84bc52c5870a7b" dependencies = [ "cc", "cmake", "libc", "pkg-config", "vcpkg", ] [[package]] name = "linear-map" version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee" [[package]] name = "linux-raw-sys" version = "0.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1a9bad9f94746442c783ca431b22403b519cd7fbeed0533fdd6328b2f2212128" [[package]] name = "lzma-sys" version = "0.1.20" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5fda04ab3764e6cde78b9974eec4f779acaba7c4e84b36eca3cf77c581b85d27" dependencies = [ "cc", "libc", "pkg-config", ] [[package]] name = "memchr" version = "2.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8f232d6ef707e1956a43342693d2a31e72989554d58299d7a88738cc95b0d35c" [[package]] name = "newtype_derive" version = "0.1.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec" dependencies = [ "rustc_version", ] [[package]] name = "openssl-src" version = "300.1.5+3.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "559068e4c12950d7dcaa1857a61725c0d38d4fc03ff8e070ab31a75d6e316491" dependencies = [ "cc", ] [[package]] name = "openssl-sys" version = "0.9.93" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "db4d56a4c0478783083cfafcc42493dd4a981d41669da64b4572a2a089b51b1d" dependencies = [ "cc", "libc", "openssl-src", "pkg-config", "vcpkg", ] [[package]] name = "percent-encoding" version = "2.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9b2a4787296e9989611394c33f193f676704af1686e70b8f8033ab5ba9a35a94" [[package]] name = "pkg-config" version = "0.3.27" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "26072860ba924cbfa98ea39c8c19b4dd6a4a25423dbdf219c1eca91aa0cf6964" [[package]] name = "ppv-lite86" version = "0.2.17" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5b40af805b3121feab8a3c29f04d8ad262fa8e0561883e7653e024ae4479e6de" [[package]] name = "proc-macro2" version = "1.0.67" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3d433d9f1a3e8c1263d9456598b16fec66f4acc9a74dacffd35c7bb09b3a1328" dependencies = [ "unicode-ident", ] [[package]] name = "quick-error" version = "1.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0" [[package]] name = "quote" version = "1.0.33" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5267fca4496028628a95160fc423a33e8b2e6af8a5302579e322e4b520293cae" dependencies = [ "proc-macro2", ] [[package]] name = "rand" version = "0.8.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404" dependencies = [ "libc", "rand_chacha", "rand_core", ] [[package]] name = "rand_chacha" version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e6c10a63a0fa32252be49d21e7709d4d4baf8d231c2dbce1eaa8141b9b127d88" dependencies = [ "ppv-lite86", "rand_core", ] [[package]] name = "rand_core" version = "0.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c" dependencies = [ "getrandom", ] [[package]] name = "redox_syscall" version = "0.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "567664f262709473930a4bf9e51bf2ebf3348f2e748ccc50dea20646858f8f29" dependencies = [ "bitflags 1.3.2", ] [[package]] name = "regex" version = "1.9.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "697061221ea1b4a94a624f67d0ae2bfe4e22b8a17b6a192afb11046542cc8c47" dependencies = [ "aho-corasick", "memchr", "regex-automata", "regex-syntax", ] [[package]] name = "regex-automata" version = "0.3.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c2f401f4955220693b56f8ec66ee9c78abffd8d1c4f23dc41a23839eb88f0795" dependencies = [ "aho-corasick", "memchr", "regex-syntax", ] [[package]] name = "regex-syntax" version = "0.7.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "dbb5fb1acd8a1a18b3dd5be62d25485eb770e05afb408a9627d14d451bae12da" [[package]] name = "rust-htslib" version = "0.44.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7c7eb0f29fce64a4e22578905efef3d72389058016023279a58b282eb5c0c467" dependencies = [ "bio-types", "byteorder", "custom_derive", "derive-new", "hts-sys", "ieee754", "lazy_static", "libc", "linear-map", "newtype_derive", "regex", "thiserror", "url", ] [[package]] name = "rustc_version" version = "0.1.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084" dependencies = [ "semver", ] [[package]] name = "rustix" version = "0.38.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "747c788e9ce8e92b12cd485c49ddf90723550b654b32508f979b71a7b1ecda4f" dependencies = [ "bitflags 2.4.0", "errno", "libc", "linux-raw-sys", "windows-sys", ] [[package]] name = "rustversion" version = "1.0.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7ffc183a10b4478d04cbbbfc96d0873219d962dd5accaff2ffbd4ceb7df837f4" [[package]] name = "semver" version = "0.1.20" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac" [[package]] name = "strsim" version = "0.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623" [[package]] name = "strum_macros" version = "0.25.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ad8d03b598d3d0fff69bf533ee3ef19b8eeb342729596df84bcc7e1f96ec4059" dependencies = [ "heck", "proc-macro2", "quote", "rustversion", "syn 2.0.37", ] [[package]] name = "syn" version = "1.0.109" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237" dependencies = [ "proc-macro2", "quote", "unicode-ident", ] [[package]] name = "syn" version = "2.0.37" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7303ef2c05cd654186cb250d29049a24840ca25d2747c25c0381c8d9e2f582e8" dependencies = [ "proc-macro2", "quote", "unicode-ident", ] [[package]] name = "tempfile" version = "3.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cb94d2f3cc536af71caac6b6fcebf65860b347e7ce0cc9ebe8f70d3e521054ef" dependencies = [ "cfg-if", "fastrand", "redox_syscall", "rustix", "windows-sys", ] [[package]] name = "thiserror" version = "1.0.49" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1177e8c6d7ede7afde3585fd2513e611227efd6481bd78d2e82ba1ce16557ed4" dependencies = [ "thiserror-impl", ] [[package]] name = "thiserror-impl" version = "1.0.49" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "10712f02019e9288794769fba95cd6847df9874d49d871d062172f9dd41bc4cc" dependencies = [ "proc-macro2", "quote", "syn 2.0.37", ] [[package]] name = "tinyvec" version = "1.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "87cc5ceb3875bb20c2890005a4e226a4651264a5c75edb2421b52861a0a0cb50" dependencies = [ "tinyvec_macros", ] [[package]] name = "tinyvec_macros" version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20" [[package]] name = "unicode-bidi" version = "0.3.13" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "92888ba5573ff080736b3648696b70cafad7d250551175acbaa4e0385b3e1460" [[package]] name = "unicode-ident" version = "1.0.12" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b" [[package]] name = "unicode-normalization" version = "0.1.22" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5c5713f0fc4b5db668a2ac63cdb7bb4469d8c9fed047b1d0292cc7b0ce2ba921" dependencies = [ "tinyvec", ] [[package]] name = "url" version = "2.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "143b538f18257fac9cad154828a57c6bf5157e1aa604d4816b5995bf6de87ae5" dependencies = [ "form_urlencoded", "idna", "percent-encoding", ] [[package]] name = "vcpkg" version = "0.2.15" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426" [[package]] name = "wasi" version = "0.11.0+wasi-snapshot-preview1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" [[package]] name = "windows-sys" version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9" dependencies = [ "windows-targets", ] [[package]] name = "windows-targets" version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9a2fa6e2155d7247be68c096456083145c183cbbbc2764150dda45a87197940c" dependencies = [ "windows_aarch64_gnullvm", "windows_aarch64_msvc", "windows_i686_gnu", "windows_i686_msvc", "windows_x86_64_gnu", "windows_x86_64_gnullvm", "windows_x86_64_msvc", ] [[package]] name = "windows_aarch64_gnullvm" version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2b38e32f0abccf9987a4e3079dfb67dcd799fb61361e53e2882c3cbaf0d905d8" [[package]] name = "windows_aarch64_msvc" version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "dc35310971f3b2dbbf3f0690a219f40e2d9afcf64f9ab7cc1be722937c26b4bc" [[package]] name = "windows_i686_gnu" version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a75915e7def60c94dcef72200b9a8e58e5091744960da64ec734a6c6e9b3743e" [[package]] name = "windows_i686_msvc" version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406" [[package]] name = "windows_x86_64_gnu" version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e" [[package]] name = "windows_x86_64_gnullvm" version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc" [[package]] name = "windows_x86_64_msvc" version = "0.48.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538"