# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
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# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.80.0"
name = "barkit-extract"
version = "0.1.1"
authors = ["Nikita Syzrantsev syzrantsev.n@yandex.ru"]
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Tool for extracting barcode nucleotide sequence according to a specified regex pattern"
homepage = "https://github.com/nsyzrantsev/barkit"
readme = "README.md"
keywords = [
    "bioinformatics",
    "sequencing",
    "barcodes",
]
license = "GPL-3.0"
repository = "https://github.com/nsyzrantsev/barkit"

[lib]
name = "barkit_extract"
path = "src/lib.rs"

[dependencies.clap]
version = "4.5.16"
features = [
    "derive",
    "env",
]

[dependencies.console]
version = "0.15.8"

[dependencies.fancy-regex]
version = "0.13.0"

[dependencies.flate2]
version = "1.0.33"

[dependencies.gzp]
version = "0.11.3"

[dependencies.indicatif]
version = "0.17.8"

[dependencies.lz4]
version = "1.26.0"

[dependencies.rayon]
version = "1.10.0"

[dependencies.regex]
version = "1.10.6"

[dependencies.seq_io]
version = "0.3.2"

[dependencies.thiserror]
version = "1.0.63"

[dev-dependencies.rstest]
version = "0.22.0"