# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "bed-reader"
version = "1.0.6"
authors = ["FaST-LMM Team <fastlmm-dev@python.org>"]
build = "build.rs"
exclude = [
    "**/tests/data/*",
    "doc/*",
    "docs/*",
    "target/*",
    "**/target/debug/*",
    "**/_static/fonts/*",
    "**/_static/css/*",
]
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Read and write the PLINK BED format, simply and efficiently."
homepage = "https://fastlmm.github.io/"
documentation = "https://docs.rs/bed-reader/latest/bed_reader/"
readme = "README-rust.md"
keywords = [
    "bioinformatics",
    "plink",
    "genomics",
    "genotype",
    "snps",
]
categories = ["science"]
license = "Apache-2.0"
repository = "https://github.com/fastlmm/bed-reader"

[lib]
name = "bed_reader"
crate-type = [
    "cdylib",
    "rlib",
]
path = "src/lib.rs"

[[example]]
name = "cloud"
path = "examples/cloud.rs"

[[example]]
name = "no_cloud"
path = "examples/no_cloud.rs"

[[test]]
name = "tests_api"
path = "tests/tests_api.rs"

[[test]]
name = "tests_api_cloud"
path = "tests/tests_api_cloud.rs"

[dependencies.anyinput]
version = "0.1.8"
features = ["ndarray"]

[dependencies.bytecount]
version = "0.6.8"

[dependencies.byteorder]
version = "1.5.0"
default-features = false

[dependencies.bytes]
version = "1.8.0"

[dependencies.cloud-file]
version = "0.2.0"

[dependencies.derive_builder]
version = "0.20.2"

[dependencies.dpc-pariter]
version = "0.4.0"

[dependencies.fetch-data]
version = "0.2.0"

[dependencies.futures-util]
version = "0.3.31"

[dependencies.itertools]
version = "0.13.0"

[dependencies.ndarray]
version = "0.16.1"
features = [
    "approx",
    "rayon",
]

[dependencies.ndarray-npy]
version = "0.9.1"
default-features = false

[dependencies.num-traits]
version = "0.2.19"

[dependencies.numpy]
version = "0.22.1"

[dependencies.pyo3]
version = "0.22.5"
features = ["extension-module"]
optional = true

[dependencies.rayon]
version = "1.10.0"

[dependencies.statrs]
version = "0.17.1"

[dependencies.thiserror]
version = "1.0.66"

[dependencies.tokio]
version = "1.41.0"
features = ["full"]
optional = true

[dev-dependencies.anyhow]
version = "1.0.92"

[dev-dependencies.ndarray-rand]
version = "0.15.0"

[dev-dependencies.rusoto_credential]
version = "0.48.0"

[dev-dependencies.temp_testdir]
version = "0.2.3"

[dev-dependencies.thousands]
version = "0.2.0"

[build-dependencies.pyo3-build-config]
version = "0.22.5"

[features]
default = ["tokio"]
extension-module = [
    "pyo3/extension-module",
    "tokio",
]
tokio = ["dep:tokio"]