# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "bio-jtools"
version = "0.2.0"
authors = ["James Hawley <developer@jrhawley.ca>"]
include = [
    "src/**/*",
    "Cargo.toml",
    "README.md",
]
description = "A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data"
homepage = "https://github.com/jrhawley/bio-jtools-rs/"
readme = "README.md"
keywords = [
    "bioinformatics",
    "cli",
    "fastq",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT"
repository = "https://github.com/jrhawley/bio-jtools-rs/"

[[bin]]
name = "bjt"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0.65"

[dependencies.bam]
version = "0.1"

[dependencies.chrono]
version = "0.4"

[dependencies.clap]
version = "4"
features = ["derive"]

[dependencies.clap-verbosity-flag]
version = "1.0.0"

[dependencies.flate2]
version = "1"

[dependencies.indoc]
version = "0.3"

[dependencies.itertools]
version = "0.9"

[dependencies.needletail]
version = "0.4"
features = ["compression"]

[dependencies.prettytable-rs]
version = "0.8.0"

[dependencies.regex]
version = "1"

[dependencies.rust-lapper]
version = "0.4.4"

[dependencies.thiserror]
version = "1.0.31"

[dependencies.walkdir]
version = "2.3"

[dev-dependencies.cargo-nextest]
version = "0.9"

[build-dependencies.cargo-make]
version = "0.36"