# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "bracken"
version = "0.1.0"
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Rust-based implementation of the Bracken library for enhanced k-mer based genomic abundance estimation."
readme = "README.md"
keywords = [
    "bioinformatics",
    "metagenomics",
]
license = "MIT"
repository = "https://github.com/eric9n/bracken-rust"

[lib]
name = "bracken"
path = "src/lib.rs"

[[bin]]
name = "bracken"
path = "src/bin/main.rs"

[[bin]]
name = "est_abundance"
path = "src/bin/est_abundance.rs"

[[bin]]
name = "kmer2read_distr"
path = "src/bin/kmer2read_distr.rs"

[[bin]]
name = "kmer_distrib"
path = "src/bin/kmer_distrib.rs"

[dependencies.chrono]
version = "0.4"

[dependencies.clap]
version = "4.4.10"
features = ["derive"]

[dependencies.dashmap]
version = "6.0.1"
features = ["rayon"]

[dependencies.memmap2]
version = "0.9.4"

[dependencies.rayon]
version = "1.10.0"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"