include common.mk

#ls -d */ | sed -e 's,//$,,' -e 's,doc,,' -e 's,lib,,'  -e 's,include,,' | xargs
SOURCE_DIR	= utilities source atmosphere imaging centroiding shackHartmann aaStats BTBT GBTBT iterativeSolvers LMMSE rayTracing gmtMirrors segmentPistonSensor pyramid
TUTORIAL	= ngsao lgsao ltao ltaoVsAst geaos
CYTHON_DIR	= utilities source imaging centroiding shackHartmann atmosphere BTBT GBTBT iterativeSolvers LMMSE aaStats rayTracing gmtMirrors segmentPistonSensor pyramid

PHONY: clean

all: makefile jsmnlib
	mkdir -p include lib
	for i in $(SOURCE_DIR); do (make -C $$i src);echo -e "\n"; done
	for i in $(SOURCE_DIR); do (make -C $$i lib);echo -e "\n"; done
	make -C lib all

install:
	$(INSTALL) lib/libceo.a lib/libjsmn.a /usr/local/lib/
	mkdir -p /usr/local/include/ceo/ && $(INSTALL) include/*.h /usr/local/include/ceo/ 

tex: makefile $(texsrc)
	for i in $(SOURCE_DIR); do (make -C $$i tex); done
	for i in $(TUTORIAL); do (make -C TUTORIAL $$i.tex); done
	rm -f doc/ceo.manual.main.tex
	for i in $(SOURCE_DIR); do (echo -e "\include{ceo.manual.$$i}\n">>doc/ceo.manual.main.tex); done
	for i in $(SOURCE_DIR); do (echo -n "\chapter" >doc/ceo.manual.$$i.tex; echo -e "{$$i}\n\label{sec:$$i}\n\n\input{../$$i/$$i}">>doc/ceo.manual.$$i.tex); done

cytex: makefile $(texcysrc)
	for i in $(CYTHON_DIR); do (make -C $$i cytex); done
	rm -f doc/cyceo.manual.main.tex
	for i in $(CYTHON_DIR); do (echo -e "\include{cyceo.manual.$$i}\n">>doc/cyceo.manual.main.tex); done
	for i in $(CYTHON_DIR); do (echo -n "\chapter" >doc/cyceo.manual.$$i.tex; echo -e "{$$i}\n\label{sec:$$i}\n\n\input{../$$i/$$i.cython}">>doc/cyceo.manual.$$i.tex); done


cython: makefile
	for i in $(CYTHON_DIR); do (make -C $$i cysrc);echo -e "\n"; done
	for i in $(CYTHON_DIR); do (make -C $$i cylib);echo -e "\n"; done

doc: tex cytex
	make -C doc all

pydoc: cython
	make -C python/docs html 

test:
	make -C test all

rjupyter:
	env PYTHONPATH="$(CEOPATH)/python" jupyter notebook --no-browser

jupyterserver:
	env PYTHONPATH="$(CEOPATH)/python" jupyter notebook --profile=nbserver

ipython:
	env PYTHONPATH="$(CEOPATH)/python" ipython

touch: 
	find . -name \*.nw -exec touch {} \;

makefile: Makefile.common
	for i in $(SOURCE_DIR); do (cp Makefile.common $$i/Makefile; sed -i -e "s/filename/$$i/g" $$i/Makefile); done

jsmnlib: 
	mkdir -p include lib
	make -C jsmn
	cp -P jsmn/jsmn.h include/
	cp -P jsmn/libjsmn.a lib/


clean_makefile:
	for i in $(SOURCE_DIR); do (rm -f $$i/Makefile); done

cleanpython:
	for i in $(SOURCE_DIR); do (make -C $$i cleanpython); done
	rm -f python/ceo/*.so
	rm -f python/ceo/*.pxd
	rm -f python/ceo/*.pyx*

clean: makefile
	for i in $(SOURCE_DIR); do (make -C $$i clean); done
	rm -f *.*~
	rm -f lib/*.o
	rm -f lib/*.a
	rm -f python/ceo/*.so
	rm -f python/ceo/*.pxd
	rm -f python/ceo/*.pyx*
	rm -f python/ceo/*.pyc

cleanbins: makefile
	for i in $(SOURCE_DIR); do (make -C $$i cleanbins); done