# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "deepbiop-bam"
version = "0.1.11"
authors = ["Yangyang Li <sunlifeliz5@gmail.com>"]
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Deep Learning Processing Library for Bam Format"
homepage = "https://github.com/cauliyang/DeepBioP"
readme = "README.md"
keywords = [
    "bam",
    "deep-learning",
    "bioinformatics",
]
license = "Apache-2.0"
repository = "https://github.com/cauliyang/DeepBioP"

[lib]
name = "deepbiop_bam"
path = "src/lib.rs"

[dependencies.ahash]
version = "0.8.11"

[dependencies.anyhow]
version = "1.0"

[dependencies.bstr]
version = "1.9.1"

[dependencies.deepbiop-fq]
version = "0.1.11"

[dependencies.deepbiop-utils]
version = "0.1.11"

[dependencies.derive_builder]
version = "0.20"

[dependencies.flate2]
version = "1.0.30"
features = ["zlib-ng"]
default-features = false

[dependencies.lexical]
version = "6.1"

[dependencies.log]
version = "0.4"

[dependencies.noodles]
version = "0.79.0"
features = [
    "bgzf",
    "core",
    "csi",
    "fasta",
    "fastq",
    "sam",
    "bam",
]

[dependencies.pyo3]
version = "0.21.0"
features = [
    "abi3-py39",
    "extension-module",
    "anyhow",
]

[dependencies.pyo3-stub-gen]
version = "0.6.0"

[dependencies.rayon]
version = "1.8"

[dev-dependencies.bio]
version = "2.0"

[dev-dependencies.tempfile]
version = "3.10"

[features]
python = []