# Changelog
All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [Unreleased]

## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-cli-v0.1.10...deepbiop-cli-v0.1.11) - 2024-08-25

### Added
- Add FaToFq command for fastq to fasta conversion
- Update keywords in Cargo.toml files
- *(io)* Refactor bam2fq function to handle equal seq and qual lengths
- Add support for writing compressed fastq files
- Add fastq to fasta conversion command
- Add new file fq2fa.rs
- Add BAM to fastq conversion functionality
- Add CLI installation guide

### Other
- Improve file variable names in FqToFa struct
- Remove unnecessary empty line
- Improve function and field comments
- Refactor file_path assignment in bam2fq.rs
- Merge branch 'dev'

## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-cli-v0.1.9...deepbiop-cli-v0.1.10) - 2024-08-20

### Added
- Update MSRV to 1.75.0
- Add new dependencies and CLI module for chimeric count
- Add deepbiop-cli package with dependencies
- Add support for processing BAM format in DeepBiop
- Add initial project files and configurations

### Fixed
- Update env_logger to version 0.11.5
- Update badge URL for deepbiop crate

### Other
- Update MSRV version in README and improve formatting
- Update description in Cargo.toml
- Remove unnecessary lines in Cargo.toml
- Update dependencies in Cargo.toml and set_up_threads in cli.rs
- Remove outdated documentation badge
- Add documentation badge to README.md
- Update badges in README.md to use consistent format
- Update README.md setup instructions
- Update README.md formatting
- Add tests for bam and fq modules
- Initial commit