{ "time_units": "years", "generation_time": 25, "doi": [ "https://doi.org/10.1371/journal.pgen.1000695" ], "description": "The Gutenkunst et al. (2009) OOA model.", "metadata": {}, "demes": [ { "name": "ancestral", "description": "Equilibrium/root population", "start_time": "Infinity", "epochs": [ { "end_time": 220000.0, "start_size": 7300, "end_size": 7300, "size_function": "constant", "selfing_rate": 0, "cloning_rate": 0 } ], "proportions": [], "ancestors": [] }, { "name": "AMH", "description": "Anatomically modern humans", "start_time": 220000.0, "epochs": [ { "end_time": 140000.0, "start_size": 12300, "end_size": 12300, "size_function": "constant", "selfing_rate": 0, "cloning_rate": 0 } ], "proportions": [ 1 ], "ancestors": [ "ancestral" ] }, { "name": "OOA", "description": "Bottleneck out-of-Africa population", "start_time": 140000.0, "epochs": [ { "end_time": 21200.0, "start_size": 2100, "end_size": 2100, "size_function": "constant", "selfing_rate": 0, "cloning_rate": 0 } ], "proportions": [ 1 ], "ancestors": [ "AMH" ] }, { "name": "YRI", "description": "Yoruba in Ibadan, Nigeria", "start_time": 140000.0, "epochs": [ { "end_time": 0, "start_size": 12300, "end_size": 12300, "size_function": "constant", "selfing_rate": 0, "cloning_rate": 0 } ], "proportions": [ 1 ], "ancestors": [ "AMH" ] }, { "name": "CEU", "description": "Utah Residents (CEPH) with Northern and Western European Ancestry", "start_time": 21200.0, "epochs": [ { "end_time": 0, "start_size": 1000, "end_size": 29725, "size_function": "exponential", "selfing_rate": 0, "cloning_rate": 0 } ], "proportions": [ 1 ], "ancestors": [ "OOA" ] }, { "name": "CHB", "description": "Han Chinese in Beijing, China", "start_time": 21200.0, "epochs": [ { "end_time": 0, "start_size": 510, "end_size": 54090, "size_function": "exponential", "selfing_rate": 0, "cloning_rate": 0 } ], "proportions": [ 1 ], "ancestors": [ "OOA" ] } ], "migrations": [ { "rate": 0.00025, "start_time": 140000.0, "end_time": 21200.0, "source": "YRI", "dest": "OOA" }, { "rate": 0.00025, "start_time": 140000.0, "end_time": 21200.0, "source": "OOA", "dest": "YRI" }, { "rate": 3e-05, "start_time": 21200.0, "end_time": 0, "source": "YRI", "dest": "CEU" }, { "rate": 3e-05, "start_time": 21200.0, "end_time": 0, "source": "CEU", "dest": "YRI" }, { "rate": 1.9e-05, "start_time": 21200.0, "end_time": 0, "source": "YRI", "dest": "CHB" }, { "rate": 1.9e-05, "start_time": 21200.0, "end_time": 0, "source": "CHB", "dest": "YRI" }, { "rate": 9.6e-05, "start_time": 21200.0, "end_time": 0, "source": "CEU", "dest": "CHB" }, { "rate": 9.6e-05, "start_time": 21200.0, "end_time": 0, "source": "CHB", "dest": "CEU" } ], "pulses": [] }