[package]
name = "drprg"
version = "0.1.1"
authors = ["Michael Hall <michael@mbh.sh>"]
edition = "2018"
license = "MIT"
description = "Drug resistance prediction with reference graphs"
repository = "https://github.com/mbhall88/drprg"
homepage = "https://github.com/mbhall88/drprg"
readme = "README.md"
keywords = ["bioinformatics", "drug-resistance", "genome-graphs"]
categories = ["science", "command-line-utilities"]

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
log = "0.4.17"
env_logger = "0.9"
thiserror = "1.0.31"
anyhow = "1.0.58"
serde = "1.0.137"
serde_derive = "1.0.137"
serde_json = "1.0.82"
csv = "1.1.6"
rust-htslib = "0.39.5"
regex = "1.5.6"
lazy_static = "1.4.0"
bstr = "0.2.17"
rayon = "1.5.3"
tempfile = "3.3.0"
float-cmp = "0.9.0"
uuid = { version = "1.1.2", features = ["v4"] }
strum = "0.24.1"
strum_macros = "0.24.2"
fs_extra = "1.3"
clap = { version = "4.0.32", features = ["derive"] }
noodles = { version = "0.24.0", features = ["fasta", "gff", "core"] }
toml = "0.5"
chrono = { version = "0.4", features = ["clock"] }
reqwest = { version = "0.11.16", features = ["blocking", "json"]}
flate2 = "1.0"
tar = "0.4"
prettytable-rs = "0.10"

[dev-dependencies]
assert_cmd = "2.0.4"
predicates = "2.1.1"