##fileformat=VCFv4.3
##FILTER=<ID=PASS,Description="All filters passed">
##fileDate==07/12/22
##ALT=<ID=SNP,Description="SNP">
##ALT=<ID=PH_SNPs,Description="Phased SNPs">
##ALT=<ID=INDEL,Description="Insertion-deletion">
##ALT=<ID=COMPLEX,Description="Complex variant, collection of SNPs and indels">
##INFO=<ID=VC,Number=1,Type=String,Description="Type (class) of variant">
##ALT=<ID=SIMPLE,Description="Graph bubble is simple">
##ALT=<ID=NESTED,Description="Variation site was a nested feature in the graph">
##ALT=<ID=TOO_MANY_ALTS,Description="Variation site was a multinested feature with too many alts to include all in the VCF">
##INFO=<ID=GRAPHTYPE,Number=1,Type=String,Description="Type of graph feature">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=MEAN_FWD_COVG,Number=R,Type=Integer,Description="Mean forward coverage">
##FORMAT=<ID=MEAN_REV_COVG,Number=R,Type=Integer,Description="Mean reverse coverage">
##FORMAT=<ID=MED_FWD_COVG,Number=R,Type=Integer,Description="Med forward coverage">
##FORMAT=<ID=MED_REV_COVG,Number=R,Type=Integer,Description="Med reverse coverage">
##FORMAT=<ID=SUM_FWD_COVG,Number=R,Type=Integer,Description="Sum forward coverage">
##FORMAT=<ID=SUM_REV_COVG,Number=R,Type=Integer,Description="Sum reverse coverage">
##FORMAT=<ID=GAPS,Number=R,Type=Float,Description="Number of gap bases">
##FORMAT=<ID=LIKELIHOOD,Number=R,Type=Float,Description="Likelihood">
##FORMAT=<ID=GT_CONF,Number=1,Type=Float,Description="Genotype confidence">
##contig=<ID=fabG1>
##contig=<ID=ethA>
##FILTER=<ID=ld,Description="Kmer coverage on called allele less than 3">
##FILTER=<ID=sb,Description="A strand on the called allele has less than 1.00% of the coverage for that allele">
##FILTER=<ID=lgc,Description="Genotype confidence score less than 5.0">
##FILTER=<ID=frs,Description="Fraction of read support on called allele is less than 0.51">
##INFO=<ID=VARID,Number=.,Type=String,Description="The identifier for the panel variant(s) the record overlaps with">
##INFO=<ID=PREDICT,Number=.,Type=String,Description="The drug resistance prediction(s) for the corresponding VARID(s), where 'R' = resistant, 'S' = susceptible, 'F' = failed, and 'U' = unknown">
##INFO=<ID=OGT,Number=1,Type=String,Description="Original genotype after adjusting for minor allele depth proportions of 0.1">
##INFO=<ID=PDP,Number=R,Type=Float,Description="Proportion of the total position depth found on this allele">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample
fabG1	54	ee86c3f2	G	C	.	PASS	VC=SNP;GRAPHTYPE=SIMPLE;PDP=1,0	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	0:11,0:14,0:11,0:14,0:11,0:14,0:0,1:-19.2622,-247.129:227.867
fabG1	81	3af39b96	CGAGAC	CGAGAT,CGATAC,TGAGAC	.	PASS	VC=PH_SNPs;GRAPHTYPE=SIMPLE;PDP=0.458333,0.152778,0.0972222,0.291667;VARID=fabG1_G-17T,fabG1_C-15X,fabG1_A-16X;PREDICT=.,.,.	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	0:16,5,3,11:17,6,4,10:17,0,0,11:20,0,0,10:96,33,16,45:103,40,20,43:0.166667,0.666667,0.8,0.5:-203.397,-362.331,-397.334,-291.261:87.8636
fabG1	93	7de4c0a3	T	A,C	.	PASS	VC=SNP;GRAPHTYPE=SIMPLE;PDP=1,0,0;VARID=fabG1_T-8X;PREDICT=.	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	0:22,0,0:21,0,0:22,0,0:21,0,0:45,0,0:43,0,0:0,1,1:-7.37793,-330.022,-330.022:322.644
fabG1	316	9b2224b0	C	T	.	PASS	VC=SNP;GRAPHTYPE=SIMPLE;PDP=0.676923,0.323077	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	0:20,9:24,12:20,9:24,12:60,19:74,24:0,0.5:-103.681,-259.025:155.344
fabG1	427	cf503e6c	C	T	.	PASS	VC=SNP;GRAPHTYPE=SIMPLE;PDP=1,0	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	0:29,0:36,0:29,0:36,0:58,0:72,0:0,1:-3.01503,-431.336:428.321
fabG1	526	649b9d31	C	T	.	PASS	VC=SNP;GRAPHTYPE=SIMPLE;PDP=0.68,0.32	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	0:27,13:24,11:27,13:24,11:82,26:73,23:0,0.5:-115.261,-288.097:172.835
fabG1	709	0745e4ee	G	A	.	PASS	VC=SNP;GRAPHTYPE=SIMPLE;PDP=0,1;VARID=fabG1_CTG607CTA,fabG1_CTG607CTT,fabG1_CTG607CTC,fabG1_CTG607TTG,fabG1_CTG607TTA;PREDICT=R,.,.,.,.	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	1:0,18:0,22:0,18:0,22:0,36:0,44:1,0:-316.207,-8.73445:307.472
fabG1	823	8d95a4ae	C	T	.	PASS	VC=SNP;GRAPHTYPE=SIMPLE;PDP=1,0	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	0:16,0:15,0:20,0:20,0:64,0:63,0:0.25,1:-30.7129,-274.76:244.047
fabG1	924	9dda4d75	T	C	.	PASS	VC=SNP;GRAPHTYPE=SIMPLE;PDP=1,0	GT:MEAN_FWD_COVG:MEAN_REV_COVG:MED_FWD_COVG:MED_REV_COVG:SUM_FWD_COVG:SUM_REV_COVG:GAPS:LIKELIHOOD:GT_CONF	0:2,0:2,0:2,0:3,0:6,0:8,0:0.666667,1:-96.4194,-150.421:54.0012