# Exon Benchmarks

This page describes the benchmarks for Exon.

## UniProt Non-Methionine Amino Acid Counts

This benchmarks shows the performance of counting the number of amino acids from uniprot that do not start with methionine.

UniProt has about 560k sequences.

![UniProt Non-Methionine Amino Acid Counts](./plots/fasta-meth-scan.svg)

## VCF Query

This benchmark shows querying a 2.6G VCF file for a genomic region.

![VCF Scan](./plots/vcf-query.svg)

## BAM Query

This benchmark shows querying a 303M BAM file for a genomic region. The same caveat as the VCF query benchmark applies.

![SAM Scan](./plots/bam-query.svg)

## MzML Scan

This benchmark shows scanning an MzML file with roughly 6k spectra.

![MzML Scan](./plots/mzml-scan.svg)

## Per-File Parallel FASTA Scan

This benchmark shows scanning 8 FASTA files at different levels of parallelism.

![Per-File Parallel FASTA Scan](./plots/fasta-parallel-scan.svg)