# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
name = "fasten"
version = "0.8.3"
authors = ["Lee Katz <gzu2@cdc.gov>"]
exclude = [
    "docs/*",
    "paper/*",
]
description = "A set of scripts to run basic analysis on fastq files"
documentation = "https://github.com/lskatz/fasten/blob/master/README.md"
readme = "./README.md"
keywords = [
    "bioinformatics",
    "fastq",
    "streaming",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT"
repository = "https://github.com/lskatz/fasten"

[[bin]]
name = "fasten_replace"
path = "src/bin/fasten_replace.rs"

[[bin]]
name = "fasten_mutate"
path = "src/bin/fasten_mutate.rs"

[[bin]]
name = "fasten_regex"
path = "src/bin/fasten_regex.rs"

[[bin]]
name = "fasten_quality_filter"
path = "src/bin/fasten_quality_filter.rs"

[[bin]]
name = "fasten_trim"
path = "src/bin/fasten_trim.rs"

[[bin]]
name = "fasten_combine"
path = "src/bin/fasten_combine.rs"

[[bin]]
name = "fasten_kmer"
path = "src/bin/fasten_kmer.rs"

[[bin]]
name = "fasten_pe"
path = "src/bin/fasten_pe.rs"

[[bin]]
name = "fasten_convert"
path = "src/bin/fasten_convert.rs"

[[bin]]
name = "fasten_straighten"
path = "src/bin/fasten_straighten.rs"

[[bin]]
name = "fasten_metrics"
path = "src/bin/fasten_metrics.rs"

[[bin]]
name = "fasten_clean"
path = "src/bin/fasten_clean.rs"

[[bin]]
name = "fasten_shuffle"
path = "src/bin/fasten_shuffle.rs"

[[bin]]
name = "fasten_randomize"
path = "src/bin/fasten_randomize.rs"

[[bin]]
name = "fasten_sample"
path = "src/bin/fasten_sample.rs"

[[bin]]
name = "fasten_validate"
path = "src/bin/fasten_validate.rs"

[[bin]]
name = "fasten_inspect"
path = "src/bin/fasten_inspect.rs"

[[bin]]
name = "fasten_repair"
path = "src/bin/fasten_repair.rs"

[[bin]]
name = "fasten_progress"
path = "src/bin/fasten_progress.rs"

[[bin]]
name = "fasten_sort"
path = "src/bin/fasten_sort.rs"

[[bin]]
name = "fasten_normalize"
path = "src/bin/fasten_normalize.rs"

[dependencies.bam]
version = "0.1.4"

[dependencies.fastq]
version = "0.6"

[dependencies.getopts]
version = "0.2.21"

[dependencies.multiqueue]
version = "0.3.2"

[dependencies.rand]
version = "0.8"

[dependencies.regex]
version = "1.10"

[dependencies.statistical]
version = "1.0"

[dependencies.threadpool]
version = "1.8.1"