#!/bin/bash set -e INPUT=testdata/four_reads.gt_16_lines.fastq CORRECT=testdata/four_reads.fastq corrected=$(./target/debug/fasten_straighten < testdata/four_reads.gt_16_lines.fastq) if [ "$corrected" != "$(cat $CORRECT)" ]; then echo "fasten_straighten did not correct the reads" exit 1 fi echo "Fasten_straighten passed!"