# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "fg-stitch-lib"
version = "0.1.1"
authors = ["Fulcrum Genomics LLC"]
description = "Stitch aligner implementation and supporting utilities."
license = "MIT"
repository = "https://github.com/fulcrumgenomics/stitch"

[dependencies.anyhow]
version = "1.0.75"

[dependencies.bio]
version = "1.1.0"

[dependencies.bit-set]
version = "0.5.3"

[dependencies.cfg-if]
version = "1.0.0"

[dependencies.derive-getters]
version = "0.3.0"

[dependencies.derive_builder]
version = "0.12.0"

[dependencies.fgoxide]
version = "0.3.0"

[dependencies.flate2]
version = "1.0.26"

[dependencies.flume]
version = "0.10.14"

[dependencies.itertools]
version = "0.10.5"

[dependencies.lazy_static]
version = "1.4.0"

[dependencies.noodles]
version = "0.37.0"
features = [
    "core",
    "bgzf",
    "sam",
    "bam",
]

[dependencies.num_cpus]
version = "1.15.0"

[dependencies.seq_io]
version = "0.3.2"

[dependencies.serde]
version = "1.0.162"

[dev-dependencies.rstest]
version = "0.17.0"

[build-dependencies.built]
version = "0.6.0"
features = ["git2"]

[features]
low_mem = []