# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "fqgrep"
version = "1.0.2"
authors = [
    "Nils Homer <nils@fulcrumgenomics.com>",
    "Seth Stadick <seth@fulcrumgenomics.com>",
]
description = "Search a pair of fastq files for reads that match a given ref or alt sequence"
homepage = "https://github.com/fulcrumgenomics/fqgrep"
documentation = "https://docs.rs/fqgrep"
readme = "README.md"
keywords = [
    "bioinformatics",
    "fastq",
]
categories = ["science"]
license = "MIT"
repository = "https://github.com/fulcrumgenomics/fqgrep"

[profile.release]
lto = true

[lib]
name = "fqgrep_lib"
path = "src/lib/mod.rs"

[[bin]]
name = "fqgrep"
path = "src/main.rs"

[dependencies.ansi_term]
version = "0.12.1"

[dependencies.anyhow]
version = "1.0.44"

[dependencies.bitvec]
version = "1.0.1"

[dependencies.bstr]
version = "0.2.17"

[dependencies.csv]
version = "1.1.6"

[dependencies.env_logger]
version = "0.9.0"

[dependencies.flate2]
version = "1.0.22"
features = ["zlib-ng-compat"]
default-features = false

[dependencies.flume]
version = "0.10.9"

[dependencies.gzp]
version = "0.9.1"

[dependencies.isatty]
version = "0.1.9"

[dependencies.itertools]
version = "0.10.3"

[dependencies.lazy_static]
version = "1.4.0"

[dependencies.log]
version = "0.4.14"

[dependencies.mimalloc]
version = "0.1.26"
default-features = false

[dependencies.num_cpus]
version = "1.13.0"

[dependencies.parking_lot]
version = "0.11.2"

[dependencies.proglog]
version = "0.3.0"
features = ["pretty_counts"]

[dependencies.rayon]
version = "1.5.1"

[dependencies.regex]
version = "1.6.0"

[dependencies.seq_io]
version = "0.3.1"

[dependencies.serde]
version = "1.0.130"
features = ["derive"]

[dependencies.structopt]
version = "0.3.23"

[dev-dependencies.fgoxide]
version = "0.1.3"

[dev-dependencies.rstest]
version = "0.12.0"

[dev-dependencies.seq_io]
version = "0.3.1"

[dev-dependencies.tempfile]
version = "3"

[build-dependencies.built]
version = "0.5.1"
features = ["git2"]