# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
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# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
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# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "fqtk"
version = "0.3.1"
authors = [
    "Nathan Roach <nathan@fulcrumgenomics.com>",
    "Tim Fennell <tim@fulcrumgenomics.com>",
    "Nils Homer <nils@fulcrumgenomics.com>",
]
description = "A toolkit for working with FASTQ files."
homepage = "https://github.com/fulcrumgenomics/fqtk"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomic",
]
categories = ["science"]
license = "MIT"
repository = "https://github.com/fulcrumgenomics/fqtk"

[profile.release]
lto = "fat"
codegen-units = 1

[lib]
name = "fqtk_lib"
path = "src/lib/mod.rs"

[[bin]]
name = "fqtk"
path = "src/bin/main.rs"

[dependencies.ahash]
version = "0.8.2"

[dependencies.anyhow]
version = "1.0.38"

[dependencies.bstr]
version = "1.0.1"

[dependencies.clap]
version = "4.0.25"
features = ["derive"]

[dependencies.enum_dispatch]
version = "0.3.8"

[dependencies.env_logger]
version = "0.9.3"

[dependencies.fgoxide]
version = "0.3.0"

[dependencies.flate2]
version = "1.0.25"
features = ["zlib-ng"]

[dependencies.itertools]
version = "0.10.5"

[dependencies.log]
version = "0.4.17"

[dependencies.mimalloc]
version = "0.1.32"
default-features = false

[dependencies.pooled-writer]
version = "0.3.0"

[dependencies.proglog]
version = "0.3.0"
features = ["pretty_counts"]

[dependencies.read-structure]
version = "0.1.0"

[dependencies.rstest]
version = "0.15.0"

[dependencies.seq_io]
version = "0.3.1"

[dependencies.serde]
version = "1.0.147"
features = ["derive"]

[dependencies.serde-aux]
version = "4.1.2"

[dependencies.thiserror]
version = "1.0.37"

[dev-dependencies.csv]
version = "1.1.6"

[dev-dependencies.tempfile]
version = "3.3.0"