/*=========================================================================

  Program: GDCM (Grassroots DICOM). A DICOM library

  Copyright (c) 2006-2011 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/

/*
 * Usage:
 * $ export LD_LIBRARY_PATH=$HOME/Projects/gdcm/debug-gcc/bin
 * $ mono bin/DecompressImage.exe gdcmData/012345.002.050.dcm decompress.dcm
 */
using System;
using gdcm;

public class DecompressImage
{
  public static int Main(string[] args)
    {
    string file1 = args[0];
    string file2 = args[1];
    ImageReader reader = new ImageReader();
    reader.SetFileName( file1 );
    bool ret = reader.Read();
    if( !ret )
      {
      return 1;
      }

    // check that one can access a Fragment from C#:
    var de = reader.GetFile().GetDataSet().GetDataElement(new Tag(0x7fe0, 0x0010));
    var sq = de.GetSequenceOfFragments();
    sq.GetFragment(0);

    Image image = new Image();
    Image ir = reader.GetImage();

    image.SetNumberOfDimensions( ir.GetNumberOfDimensions() );

    //Just for fun:
    //int dircos =  ir.GetDirectionCosines();
    //t = gdcm.Orientation.GetType(dircos);
    //int l = gdcm.Orientation.GetLabel(t);
    //System.Console.WriteLine( "Orientation label:" + l );

    // Set the dimensions,
    // 1. either one at a time
    //image.SetDimension(0, ir.GetDimension(0) );
    //image.SetDimension(1, ir.GetDimension(1) );

    // 2. the array at once
    uint[] dims = {0, 0};
    // Just for fun let's invert the dimensions:
    dims[0] = ir.GetDimension(1);
    dims[1] = ir.GetDimension(0);
    ir.SetDimensions( dims );

    PixelFormat pixeltype = ir.GetPixelFormat();
    image.SetPixelFormat( pixeltype );

    PhotometricInterpretation pi = ir.GetPhotometricInterpretation();
    image.SetPhotometricInterpretation( pi );

    DataElement pixeldata = new DataElement( new Tag(0x7fe0,0x0010) );
    byte[] str1 = new byte[ ir.GetBufferLength()];
    ir.GetBuffer( str1 );
    //System.Console.WriteLine( ir.GetBufferLength() );
    pixeldata.SetByteValue( str1, new VL( (uint)str1.Length ) );
    //image.SetDataElement( pixeldata );
    ir.SetDataElement( pixeldata );


    ImageWriter writer = new ImageWriter();
    writer.SetFileName( file2 );
    writer.SetFile( reader.GetFile() );
    writer.SetImage( ir );
    ret = writer.Write();
    if( !ret )
      {
      return 1;
      }

    return 0;
    }
}