/*========================================================================= Program: GDCM (Grassroots DICOM). A DICOM library Copyright (c) 2006-2011 Mathieu Malaterre All rights reserved. See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notice for more information. =========================================================================*/ #include "gdcmFileStreamer.h" #include "gdcmTesting.h" #include "gdcmSystem.h" #include "gdcmReader.h" #include "gdcmFilename.h" #include "gdcmImageRegionReader.h" #include "gdcmImageHelper.h" int TestFileStream4(const char *filename, bool verbose = false) { using namespace gdcm; // Create directory first: const char subdir[] = "TestFileStreamer4"; std::string tmpdir = Testing::GetTempDirectory( subdir ); if( !System::FileIsDirectory( tmpdir.c_str() ) ) { System::MakeDirectory( tmpdir.c_str() ); //return 1; } std::string outfilename = Testing::GetTempFilename( filename, subdir ); gdcm::Filename fn( filename ); const char *name = fn.GetName(); // Special handling: bool checktemplate = false; if( strcmp(name, "DMCPACS_ExplicitImplicit_BogusIOP.dcm" ) == 0 || strcmp(name, "ExplicitVRforPublicElementsImplicitVRforShadowElements.dcm") == 0 || strcmp(name, "SIEMENS_MAGNETOM-12-MONO2-GDCM12-VRUN.dcm") == 0 ) { checktemplate = true; } if( strcmp(name, "JPEGNote_empty.dcm" ) == 0 || strcmp(name, "JPEGNote_missing.dcm" ) == 0 ) { // cannot read dims from DICOM header... return 0; } gdcm::ImageRegionReader irr; irr.SetFileName( filename ); if( !irr.ReadInformation() ) { //std::cerr << "not an image: " << filename << std::endl; return 0; } gdcm::File & file = irr.GetFile(); std::vector dims = gdcm::ImageHelper::GetDimensionsValue(file); PixelFormat pf = gdcm::ImageHelper::GetPixelFormatValue(file); int pixsize = pf.GetPixelSize(); const size_t computedlen = dims[0] * dims[1] * dims[2] * pixsize; const FileMetaInformation &header = file.GetHeader(); const TransferSyntax &ts = header.GetDataSetTransferSyntax(); if( verbose ) { std::cout << "Processing: " << filename << std::endl; std::cout << "Generating: " << outfilename << std::endl; } std::vector vbuffer; assert( dims[0] ); vbuffer.resize( dims[0] * pixsize ); char *buffer = &vbuffer[0]; const size_t len = vbuffer.size(); gdcm::FileStreamer fs; fs.ReserveDataElement( computedlen ); fs.SetTemplateFileName( filename ); fs.CheckTemplateFileName( checktemplate ); fs.SetOutputFileName( outfilename.c_str() ); const gdcm::Tag pixeldata(0x7fe0,0x0010); bool b = true; if( strcmp(name, "libido1.0-vol.acr" ) != 0 ) // use Planes instead of Number of Frames { b = fs.CheckDataElement( pixeldata ); // will be checking file size } if( !b ) { std::cerr << "Failed to CheckDataElement: " << outfilename << std::endl; return 1; } b = fs.StartDataElement( pixeldata ); if( !b ) { std::cerr << "Failed to StartDataElement: " << outfilename << std::endl; return 1; } for( unsigned int z = 0; z < dims[2]; ++z ) for( unsigned int y = 0; y < dims[1]; ++y ) { b = fs.AppendToDataElement( pixeldata, buffer, len ); if( !b ) { std::cerr << "Failed to AppendToDataElement: " << outfilename << std::endl; return 1; } } if( !fs.StopDataElement( pixeldata ) ) { if( ts.IsEncapsulated() ) { // Everything is under control return 0; } std::cerr << "Failed to StopDataElement: " << outfilename << std::endl; return 1; } // Read back and check: gdcm::Reader r; r.SetFileName( outfilename.c_str() ); if( !r.Read() ) { std::cerr << "Failed to read: " << outfilename << std::endl; return 1; } gdcm::File & f = r.GetFile(); gdcm::DataSet & ds = f.GetDataSet(); if( !ds.FindDataElement( pixeldata ) ) { std::cerr << "No pixel data: " << outfilename << std::endl; return 1; } const gdcm::DataElement & de = ds.GetDataElement( pixeldata ); const gdcm::ByteValue *bv = de.GetByteValue(); if( bv->GetLength() != computedlen ) { std::cerr << "Mismatch len: " << outfilename << " : " << bv->GetLength() << " vs " << computedlen << std::endl; return 1; } const char *p = bv->GetPointer(); const char *end = p + dims[0] * dims[1] * dims[2]; int res = 0; for( ; p != end; ++p ) { res += *p; } if( res ) { std::cerr << "Mismatch: " << outfilename << std::endl; } return res; } int TestFileStreamer4(int argc, char *argv[]) { if( argc == 2 ) { const char *filename = argv[1]; return TestFileStream4(filename, true); } // else gdcm::Trace::DebugOff(); gdcm::Trace::WarningOff(); gdcm::Trace::ErrorOff(); int r = 0, i = 0; const char *filename; const char * const *filenames = gdcm::Testing::GetFileNames(); while( (filename = filenames[i]) ) { r += TestFileStream4( filename ); ++i; } return r; }