/*========================================================================= Program: GDCM (Grassroots DICOM). A DICOM library Copyright (c) 2006-2011 Mathieu Malaterre All rights reserved. See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notice for more information. =========================================================================*/ #include "gdcmImageRegionReader.h" #include "gdcmImageHelper.h" #include "gdcmFilename.h" #include "gdcmBoxRegion.h" #include "gdcmTesting.h" static int TestImageRegionRead(const char* filename, bool verbose = false) { if( verbose ) std::cerr << "Reading: " << filename << std::endl; gdcm::ImageRegionReader reader; gdcm::Filename fn( filename ); // DMCPACS_ExplicitImplicit_BogusIOP.dcm is very difficult to handle since // we need to read 3 attribute to detect the "well known" bug. However the third // attribute is (b500,b700) which make ReadUpToTag(7fe0,0010) fails... if( strcmp(fn.GetName(), "DMCPACS_ExplicitImplicit_BogusIOP.dcm" ) == 0 || strcmp(fn.GetName(), "SC16BitsAllocated_8BitsStoredJ2K.dcm" ) == 0 // mismatch pixel format in JPEG 2000 vs DICOM || strcmp(fn.GetName(), "SC16BitsAllocated_8BitsStoredJPEG.dcm" ) == 0 // mismatch pixel format in JPEG vs DICOM || strcmp(fn.GetName(), "PHILIPS_Gyroscan-12-Jpeg_Extended_Process_2_4.dcm" ) == 0 // bogus JPEG cannot be streamed || strcmp(fn.GetName(), "US-YBR_FULL_422-EVRLE.dcm" ) == 0 // FIXME TODO // FIXME: we should be able to handle those at some point: || strcmp(fn.GetName(), "JPEGNote_empty.dcm" ) == 0 || strcmp(fn.GetName(), "JPEGNote_missing.dcm" ) == 0 || strcmp(fn.GetName(), "JPEGNote_bogus.dcm" ) == 0 ) { std::cerr << "Skipping impossible file: " << filename << std::endl; return 0; } reader.SetFileName( filename ); bool canReadInformation = reader.ReadInformation(); if (!canReadInformation) { std::cerr << "Cannot ReadInformation: " << filename << std::endl; return 0; //unable to read tags as expected. } int res = 0; size_t len = 0; std::vector vbuffer; std::vector dims = gdcm::ImageHelper::GetDimensionsValue(reader.GetFile()); gdcm::BoxRegion box; for( unsigned int z = 0; z < dims[2]; ++z ) { box.SetDomain(0, dims[0] - 1, 0, dims[1] - 1, z, z); reader.SetRegion( box ); size_t zlen = reader.ComputeBufferLength(); if( !zlen ) { std::cerr << "No length for: " << filename << std::endl; return 1; } size_t oldlen = vbuffer.size(); len += zlen; vbuffer.resize( oldlen + zlen ); char* buffer = &vbuffer[0] + oldlen; bool b = reader.ReadIntoBuffer(buffer, zlen); if( !b ) { std::cerr << "Could not ReadIntoBuffer" << std::endl; return 1; } } const char *ref = gdcm::Testing::GetMD5FromFile(filename); // FIXME: PC=1 if( strcmp(fn.GetName(), "ACUSON-24-YBR_FULL-RLE-b.dcm" ) == 0) ref = "2d7a28cae6c3b3183284d1b4ae08307f"; if( strcmp(fn.GetName(), "ACUSON-24-YBR_FULL-RLE.dcm" ) == 0) ref = "429f31f0b70bd515b3feeda5dea5eac0"; char digest[33]; char* buffer = &vbuffer[0]; #if 0 std::ofstream of( "/tmp/dd.raw", std::ios::binary ); of.write( buffer, len ); of.close(); #endif gdcm::Testing::ComputeMD5(buffer, len, digest); if( verbose ) { std::cout << "ref=" << ref << std::endl; std::cout << "md5=" << digest << std::endl; } if( !ref ) { // new regression image needs a md5 sum std::cout << "Missing md5 " << digest << " for: " << filename << std::endl; res = 1; } else if( strcmp(digest, ref) ) { std::cerr << "Problem reading image from: " << filename << std::endl; std::cerr << "Found " << digest << " instead of " << ref << std::endl; res = 1; } return res; } int TestImageRegionReader2(int argc, char *argv[]) { if( argc == 2 ) { const char *filename = argv[1]; return TestImageRegionRead(filename, true); } // else // First of get rid of warning/debug message gdcm::Trace::DebugOff(); gdcm::Trace::WarningOff(); int r = 0, i = 0; const char *filename; const char * const *filenames = gdcm::Testing::GetFileNames(); while( (filename = filenames[i]) ) { r += TestImageRegionRead(filename); ++i; } return r; }