/*=========================================================================

  Program: GDCM (Grassroots DICOM). A DICOM library

  Copyright (c) 2006-2011 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
// We are required to call the package 'vtk' eventhough I (MM) would have prefered
// an import statement along the line of:
// import vtkgdcm.*;
import vtk.*;

/*
 * Usage:
 * export LD_LIBRARY_PATH=/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/xawt:.
 * java -classpath `pwd`/vtkgdcm.jar:/usr/share/java/vtk.jar:. ReadSeriesIntoVTK
 */
public class ReadSeriesIntoVTK
{
  static {
    System.loadLibrary("vtkCommonJava");
    System.loadLibrary("vtkFilteringJava");
    System.loadLibrary("vtkIOJava");
    System.loadLibrary("vtkImagingJava");
    System.loadLibrary("vtkGraphicsJava");
    System.loadLibrary("vtkgdcmJava");
    try {
      System.loadLibrary("vtkRenderingJava");
    } catch (Throwable e) {
      System.out.println("cannot load vtkHybrid, skipping...");
    }
    try {
      System.loadLibrary("vtkHybridJava");
    } catch (Throwable e) {
      System.out.println("cannot load vtkHybrid, skipping...");
    }
    try {
      System.loadLibrary("vtkVolumeRenderingJava");
    } catch (Throwable e) {
      System.out.println("cannot load vtkVolumeRendering, skipping...");
    }
  }

  public static void main(String[] args)
    {
    vtkFileOutputWindow outWin = new vtkFileOutputWindow();
    outWin.SetInstance(outWin);
    outWin.SetFileName("MVSVTKViewer.log");

    // See: http://review.source.kitware.com/#change,888
    // vtkWrapJava does not handle static keyword
    // String directory = vtkGDCMTesting.GetGDCMDataRoot();
    vtkGDCMTesting t = new vtkGDCMTesting();
    String directory = t.GetGDCMDataRoot();
    String file0 = directory + "/SIEMENS_MAGNETOM-12-MONO2-FileSeq0.dcm";
    String file1 = directory + "/SIEMENS_MAGNETOM-12-MONO2-FileSeq1.dcm";
    String file2 = directory + "/SIEMENS_MAGNETOM-12-MONO2-FileSeq2.dcm";
    String file3 = directory + "/SIEMENS_MAGNETOM-12-MONO2-FileSeq3.dcm";

    vtkStringArray s = new vtkStringArray();
    System.out.println("adding : " + file0 );
    s.InsertNextValue( file0 );
    s.InsertNextValue( file1 );
    s.InsertNextValue( file2 );
    s.InsertNextValue( file3 );

    vtkGDCMImageReader reader = new vtkGDCMImageReader();
    reader.SetFileNames( s );
    reader.Update();

    System.out.println("Success reading: " + file0 );

    vtkMetaImageWriter writer = new vtkMetaImageWriter();
    writer.DebugOn();
    writer.SetCompression( false );
    writer.SetInputConnection( reader.GetOutputPort() );
    writer.SetFileName( "ReadSeriesIntoVTK.mhd" );
    writer.Write();

    System.out.println("Success writing: " + writer.GetFileName() );
    }
}