/*=========================================================================

  Program: GDCM (Grassroots DICOM). A DICOM library

  Copyright (c) 2006-2011 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
// See docs:
// http://www.swig.org/Doc1.3/CSharp.html
// http://www.swig.org/Doc1.3/SWIGPlus.html
// The main difference with this wrapping is that gdcm.System is now renamed
// to gdcm.PosixEmulation. I could not figure out a way to preserve gdcm.System
// as swig by default flatten all namespace and gdcm.System would conflict
// with .NET 'System' namespace... fix welcome to get back gdcm.System
// until then gdcm.PosixEmulation will remain the recommended way to access
// gdcm.System API from C#

// Some good reference:
// https://code.crt.realtors.org/projects/librets/browser/librets/trunk/project/swig/librets.i?rev=729
// http://vcielka.darksun.sk/~jnx/download/asterisk/minisip-trunk/libminisip-swig/source/minisip.i
// http://www.mono-project.com/Interop_with_Native_Libraries
// http://msdn.microsoft.com/en-us/magazine/cc301501.aspx
// http://www.codeproject.com/KB/cs/unmanage.aspx
// http://www.gamedev.net/community/forums/mod/journal/journal.asp?jn=458883&reply_id=3221347
// http://msdn.microsoft.com/en-us/magazine/cc164193.aspx

/*
> I want to wrap C++ code in C#. Is there a way to instruct swig to insert
> a
> series of "using" statements for each C# source file that gets generated?


%pragma(csharp) moduleimports=%{
using System;
using System.Runtime.InteropServices;
using System.Diagnostics;
using My.Own.Namespace;
%}

%pragma(csharp) imclassimports=%{
using System;
using System.Runtime.InteropServices;
using My.Own.Namespace;
%}
*/

/*
In order to get documentation on member function and class, one can do (SWIG 1.3.39):

%csmethodmodifiers gdcm::Tag::GetGroup "
  /// <summary>
  /// This is the GetGroup func
  /// </summary>
  public";
%typemap(csclassmodifiers) gdcm::Tag "/// coucou class
public class";
*/

%module(docstring="A DICOM library",directors=1) gdcm
#pragma SWIG nowarn=302,303,312,362,383,389,401,503,504,509,510,514,516

// There is something funky with swig 1.3.33, one cannot simply test defined(SWIGCSHARP)
// I need to redefine it myself... seems to be solved in later revision
#if defined(SWIGCSHARP)
%{
#define SWIGCSHARP
%}
#endif

%{
#include "gdcmTypes.h"
#include "gdcmASN1.h"
#include "gdcmSmartPointer.h"
#include "gdcmSwapCode.h"
#include "gdcmEvent.h"
#include "gdcmProgressEvent.h"
#include "gdcmFileNameEvent.h"
#include "gdcmAnonymizeEvent.h"
#include "gdcmDirectory.h"
#ifdef GDCM_BUILD_TESTING
#include "gdcmTesting.h"
#endif
#include "gdcmObject.h"
#include "gdcmPixelFormat.h"
#include "gdcmMediaStorage.h"
#include "gdcmTag.h"
#include "gdcmPrivateTag.h"
#include "gdcmVL.h"
#include "gdcmVR.h"
#include "gdcmVM.h"
#include "gdcmObject.h"
#include "gdcmValue.h"
#include "gdcmByteValue.h"
#include "gdcmDataElement.h"
#include "gdcmItem.h"
#include "gdcmSequenceOfItems.h"
#include "gdcmDataSet.h"
//#include "gdcmString.h"
//#include "gdcmCodeString.h"
#include "gdcmPreamble.h"
#include "gdcmFile.h"
#include "gdcmBitmap.h"
#include "gdcmIconImage.h"
#include "gdcmPixmap.h"
#include "gdcmImage.h"
#include "gdcmFragment.h"
#include "gdcmCSAHeader.h"
#include "gdcmPDBHeader.h"
#include "gdcmSequenceOfFragments.h"
#include "gdcmTransferSyntax.h"
#include "gdcmBasicOffsetTable.h"
//#include "gdcmLO.h"
#include "gdcmCSAElement.h"
#include "gdcmPDBElement.h"
#include "gdcmFileSet.h"

#include "gdcmReader.h"
#include "gdcmPixmapReader.h"
#include "gdcmImageReader.h"
#include "gdcmWriter.h"
#include "gdcmPixmapWriter.h"
#include "gdcmImageWriter.h"
#include "gdcmStringFilter.h"
#include "gdcmGlobal.h"
#include "gdcmDicts.h"
#include "gdcmDict.h"
#include "gdcmCSAHeaderDict.h"
#include "gdcmDictEntry.h"
#include "gdcmCSAHeaderDictEntry.h"
#include "gdcmUIDGenerator.h"
#include "gdcmUUIDGenerator.h"
//#include "gdcmConstCharWrapper.h"
#include "gdcmScanner.h"
#include "gdcmStrictScanner.h"
#include "gdcmAttribute.h"
#include "gdcmSubject.h"
#include "gdcmCommand.h"
#include "gdcmAnonymizer.h"
#include "gdcmFileAnonymizer.h"
#include "gdcmFileStreamer.h"
#include "gdcmSystem.h"
#include "gdcmTrace.h"
#include "gdcmUIDs.h"
#include "gdcmSorter.h"
#include "gdcmIPPSorter.h"
#include "gdcmSpectroscopy.h"
#include "gdcmPrinter.h"
#include "gdcmXMLPrinter.h"
#include "gdcmDumper.h"
#include "gdcmOrientation.h"
#include "gdcmFiducials.h"
#include "gdcmWaveform.h"
#include "gdcmPersonName.h"
#include "gdcmCurve.h"
#include "gdcmDICOMDIR.h"
#include "gdcmValidate.h"
#include "gdcmApplicationEntity.h"
#include "gdcmDictPrinter.h"
#include "gdcmFilenameGenerator.h"
#include "gdcmVersion.h"
#include "gdcmFilename.h"
#include "gdcmEnumeratedValues.h"
#include "gdcmPatient.h"
#include "gdcmStudy.h"
#include "gdcmUsage.h"
#include "gdcmMacroEntry.h"
#include "gdcmModuleEntry.h"
#include "gdcmNestedModuleEntries.h"
#include "gdcmMacro.h"
#include "gdcmMacros.h"
#include "gdcmModule.h"
#include "gdcmModules.h"
#include "gdcmDefs.h"
#include "gdcmIOD.h"
#include "gdcmIODs.h"
#include "gdcmTableEntry.h"
#include "gdcmDefinedTerms.h"
#include "gdcmSeries.h"
#include "gdcmIODEntry.h"
#include "gdcmRescaler.h"
#include "gdcmSegmentedPaletteColorLookupTable.h"
#include "gdcmUnpacker12Bits.h"
#include "gdcmDirectionCosines.h"
#include "gdcmTagPath.h"
#include "gdcmBitmapToBitmapFilter.h"
#include "gdcmPixmapToPixmapFilter.h"
#include "gdcmImageToImageFilter.h"
#include "gdcmSOPClassUIDToIOD.h"
#include "gdcmCoder.h"
#include "gdcmDecoder.h"
#include "gdcmCodec.h"
#include "gdcmImageCodec.h"
#include "gdcmRLECodec.h"
#include "gdcmJPEGCodec.h"
#include "gdcmJPEGLSCodec.h"
#include "gdcmJPEG2000Codec.h"
#include "gdcmPNMCodec.h"
#include "gdcmImageChangeTransferSyntax.h"
#include "gdcmFileChangeTransferSyntax.h"
#include "gdcmImageApplyLookupTable.h"
#include "gdcmSplitMosaicFilter.h"
#include "gdcmImageChangePhotometricInterpretation.h"
#include "gdcmImageChangePlanarConfiguration.h"
#include "gdcmImageFragmentSplitter.h"
#include "gdcmDataSetHelper.h"
#include "gdcmFileExplicitFilter.h"
#include "gdcmImageHelper.h"
#include "gdcmMD5.h"
#include "gdcmDummyValueGenerator.h"
#include "gdcmSHA1.h"
#include "gdcmBase64.h"
#include "gdcmCryptographicMessageSyntax.h"
#include "gdcmCryptoFactory.h"
#include "gdcmSpacing.h"
#include "gdcmIconImageGenerator.h"
#include "gdcmIconImageFilter.h"

#include "gdcmSimpleSubjectWatcher.h"
#include "gdcmDICOMDIRGenerator.h"
#include "gdcmFileDerivation.h"

#include "gdcmQueryBase.h"
#include "gdcmQueryFactory.h"
#include "gdcmBaseRootQuery.h"
#include "gdcmPresentationContext.h"
#include "gdcmPresentationContextGenerator.h"
#include "gdcmCompositeNetworkFunctions.h"
#include "gdcmServiceClassUser.h"

#include "gdcmStreamImageReader.h"

#include "gdcmRegion.h"
#include "gdcmBoxRegion.h"
#include "gdcmImageRegionReader.h"
#include "gdcmJSON.h"
#include "gdcmFileDecompressLookupTable.h"

using namespace gdcm;
%}

//%include "docstrings.i"

// swig need to know what are uint16_t, uint8_t...
%include "stdint.i"

// gdcm does not use std::string in its interface, but we do need it for the
// %extend (see below)
%include "std_string.i"
%include "std_set.i"
%include "std_vector.i"
%include "std_pair.i"
%include "std_map.i"
%include "exception.i"

// operator= is not needed in python AFAIK
%ignore operator=;                      // Ignore = everywhere.
%ignore operator++;                     // Ignore

%define EXTEND_CLASS_PRINT_GENERAL(classfuncname,classname)
%extend classname
{
  const char *classfuncname() {
    static std::string buffer;
    std::ostringstream os;
    os << *self;
    buffer = os.str();
    return buffer.c_str();
  }
};
%enddef

#if defined(SWIGCSHARP)
%define EXTEND_CLASS_PRINT(classname)
EXTEND_CLASS_PRINT_GENERAL(toString,classname)
%enddef
#endif

%pragma(csharp) modulecode=%{
	  internal static byte[] StringToUtf8Bytes(string str)
	  {
	    if (str == null)
	      return null;

	    int bytecount = System.Text.Encoding.UTF8.GetMaxByteCount(str.Length);
	    byte[] bytes = new byte[bytecount + 1];
	    System.Text.Encoding.UTF8.GetBytes(str, 0, str.Length, bytes, 0);
	    return bytes;
	  }

	  internal static string Utf8BytesToString(System.IntPtr pNativeData)
	  {
	    if (pNativeData == System.IntPtr.Zero)
	        return null;
	       
	    int length = global::System.Runtime.InteropServices.Marshal.PtrToStringAnsi(pNativeData).Length;
	    byte[] strbuf = new byte[length]; 
	    global::System.Runtime.InteropServices.Marshal.Copy(pNativeData, strbuf, 0, length);
	    return System.Text.Encoding.UTF8.GetString(strbuf);
	  }
%}


%typemap(csin) (const char *filename_native)  "$module.StringToUtf8Bytes($csinput)"
%typemap(imtype, out="IntPtr") (const char *filename_native) "byte[]"
%typemap(out) (const char *filename_native) %{ $result = $1; %}
%typemap(csout, excode=SWIGEXCODE) (const char *filename_native) {
// %typemap(csout) (const char *filename_native)
IntPtr cPtr = $imcall;
string ret = $module.Utf8BytesToString(cPtr);
$excode
return ret;
}

//%apply ( const char *filename_native ) { const char* GetFieldAsString };

//%feature("autodoc", "1")
%include "gdcmConfigure.h"
//%include "gdcmTypes.h"
//%include "gdcmWin32.h"
// I cannot include gdcmWin32.h without gdcmTypes.h, first. But gdcmTypes.h needs to know _MSC_VER at swig time...
#define GDCM_EXPORT
%include "gdcmLegacyMacro.h"

// The following must be define early on as gdcmVL.h get included real early
%rename(GetValueLength) gdcm::VL::operator uint32_t () const;
// following does not work:
//%csmethodmodifiers gdcm::VL::GetValueLength() "private"
// VR
%rename(GetVRField) gdcm::VR::operator VRType () const;
// the following does not work
//%csmethodmodifiers gdcm::VR::GetVRField() "private"
// VM
%rename(GetVMField) gdcm::VM::operator VMType () const;
// GetType is already used, prefer GetMSType:
%rename(GetMSType) gdcm::MediaStorage::operator MSType () const;

%include "gdcmSwapCode.h"

//%feature("director") Event;
//%feature("director") AnyEvent;
%include "gdcmEvent.h"

%include "gdcmPixelFormat.h"
EXTEND_CLASS_PRINT(gdcm::PixelFormat)

%include "gdcmMediaStorage.h"
EXTEND_CLASS_PRINT(gdcm::MediaStorage)
%extend gdcm::MediaStorage
{
%typemap(cscode) MediaStorage
%{
  public static implicit operator MSType( MediaStorage ms )
    {
    return ms.GetMSType();
    }
%}
}

//%rename(__getitem__) gdcm::Tag::operator[];
//%rename(this ) gdcm::Tag::operator[];
%include "gdcmTag.h"
EXTEND_CLASS_PRINT(gdcm::Tag)
%include "gdcmPrivateTag.h"
EXTEND_CLASS_PRINT(gdcm::PrivateTag)

%include "gdcmProgressEvent.h"
%extend gdcm::ProgressEvent {
  static ProgressEvent *Cast(Event *event) {
    return dynamic_cast<ProgressEvent*>(event);
  }
};
%include "gdcmFileNameEvent.h"
%extend gdcm::FileNameEvent {
  static FileNameEvent *Cast(Event *event) {
    return dynamic_cast<FileNameEvent*>(event);
  }
};
//%feature("director") AnonymizeEvent;
%include "gdcmAnonymizeEvent.h"
%extend gdcm::AnonymizeEvent {
  static AnonymizeEvent *Cast(Event *event) {
    return dynamic_cast<AnonymizeEvent*>(event);
  }
};

%include "gdcmVL.h"
EXTEND_CLASS_PRINT(gdcm::VL)
%extend gdcm::VL
{
%typemap(cscode) VL
%{
  public static implicit operator uint( VL vl )
    {
    return vl.GetValueLength();
    }
%}
}

%typemap(csbase) gdcm::VR::VRType "long"
%include "gdcmVR.h"
EXTEND_CLASS_PRINT(gdcm::VR)
%extend gdcm::VR
{
%typemap(cscode) VR
%{
public static implicit operator VR.VRType( VR vr )
    {
    return vr.GetVRField();
    }
%}
}
%include "gdcmVM.h"
EXTEND_CLASS_PRINT(gdcm::VM)
%extend gdcm::VM
{
%typemap(cscode) VM
%{
public static implicit operator VM.VMType( VM vm )
    {
    return vm.GetVMField();
    }
%}
}
//%template (FilenameType) std::string;
%template (FilenamesType) std::vector<std::string>;
%include "gdcmDirectory.h"
EXTEND_CLASS_PRINT(gdcm::Directory)
%clear FilenamesType;
%include "gdcmObject.h"
%include "gdcmValue.h"
EXTEND_CLASS_PRINT(gdcm::Value)
// Array marshaling for arrays of primitives
%define %cs_marshal_array(TYPE, CSTYPE)
       %typemap(ctype)  TYPE[] "void*"
       %typemap(imtype, inattributes="[global::System.Runtime.InteropServices.MarshalAs(global::System.Runtime.InteropServices.UnmanagedType.LPArray)]") TYPE[] "CSTYPE[]"
       %typemap(cstype) TYPE[] "CSTYPE[]"
       %typemap(in)     TYPE[] %{ $1 = (TYPE*)$input; %}
       %typemap(csin)   TYPE[] "$csinput"
%enddef

// The following macro invocations allow you to pass arrays of primitive
// types. Arrays of other things such as System.Drawing.Point are also
// possible.
%cs_marshal_array(bool, bool)
%cs_marshal_array(char, byte)
%cs_marshal_array(short, short)
%cs_marshal_array(unsigned short, ushort)
%cs_marshal_array(int, int)
%cs_marshal_array(unsigned int, uint)
%cs_marshal_array(long, int)
%cs_marshal_array(unsigned long, uint)
%cs_marshal_array(long long, long)
%cs_marshal_array(unsigned long long, ulong)
%cs_marshal_array(float, float)
%cs_marshal_array(double, double)


// %clear commands should be unnecessary, but do it just-in-case
%clear char* buffer;
%clear unsigned char* buffer;

%apply char[] { char* buffer }
%ignore gdcm::ByteValue::WriteBuffer(std::ostream &os) const;
//%ignore gdcm::ByteValue::GetPointer() const;
//%ignore gdcm::ByteValue::GetBuffer(char *buffer, unsigned long length) const;
%include "gdcmByteValue.h"
EXTEND_CLASS_PRINT(gdcm::ByteValue)
%clear char* buffer;

%apply char[] { const char* array }

%include "gdcmASN1.h"
%include "gdcmSmartPointer.h"
%template(SmartPtrSQ) gdcm::SmartPointer<gdcm::SequenceOfItems>;
%template(SmartPtrFrag) gdcm::SmartPointer<gdcm::SequenceOfFragments>;
%include "gdcmDataElement.h"
EXTEND_CLASS_PRINT(gdcm::DataElement)

%clear const char* array;
%extend gdcm::DataElement
{
 void SetArray(unsigned char array[], unsigned int nitems) {
   $self->SetByteValue((char*)array, nitems * sizeof(unsigned char) );
 }
 void SetArray(char array[], unsigned int nitems) {
   $self->SetByteValue((char*)array, nitems * sizeof(char) );
 }
 void SetArray(unsigned short array[], unsigned int nitems) {
   $self->SetByteValue((char*)array, nitems * sizeof(unsigned short) );
 }
 void SetArray(short array[], unsigned int nitems) {
   $self->SetByteValue((char*)array, nitems * sizeof(short) );
 }
 void SetArray(float array[], unsigned int nitems) {
   $self->SetByteValue((char*)array, nitems * sizeof(float) );
 }
 void SetArray(double array[], unsigned int nitems) {
   $self->SetByteValue((char*)array, nitems * sizeof(double) );
 }
};

%include "gdcmItem.h"
EXTEND_CLASS_PRINT(gdcm::Item)
// The following line is very important it properly convert :
// SWIGTYPE_p_std__vectorT_int_t__size_type -> uint
%template() std::vector< gdcm::Item >;
%include "gdcmSequenceOfItems.h"
EXTEND_CLASS_PRINT(gdcm::SequenceOfItems)
%rename (CSharpDataSet) SWIGDataSet;
%rename (CSharpTagToValue) SWIGTagToValue;
// convert SWIGTYPE_p_std__setT_gdcm__DataElement_t__size_type
%template() std::set< gdcm::DataElement >;
%include "gdcmDataSet.h"
EXTEND_CLASS_PRINT(gdcm::DataSet)
//%include "gdcmString.h"
//%include "gdcmCodeString.h"
//%include "gdcmTransferSyntax.h"
%include "gdcmPhotometricInterpretation.h"
EXTEND_CLASS_PRINT(gdcm::PhotometricInterpretation)
%include "gdcmObject.h"
%apply char[] { char* thebuffer }
%apply char[] { const char* inputbuffer }
%apply char[] { char* outputbuffer }
%ignore gdcm::LookupTable::GetLUT(LookupTableType type, unsigned char *array, unsigned int &length) const;
%include "gdcmLookupTable.h"
%extend gdcm::LookupTable
{
  unsigned int GetLUT(LookupTableType type, char *thebuffer) const {
    unsigned int length = 0;
    self->GetLUT( type, (unsigned char*)thebuffer, length);
    return length;
  }
};
%clear char* thebuffer;
%clear char* inputbuffer;
%clear char* outputbuffer;
EXTEND_CLASS_PRINT(gdcm::LookupTable)
%include "gdcmOverlay.h"
EXTEND_CLASS_PRINT(gdcm::Overlay)
//%include "gdcmVR.h"
//%template (DataElementSet) std::set<gdcm::DataElement>;
%include "gdcmPreamble.h"
EXTEND_CLASS_PRINT(gdcm::Preamble)
%include "gdcmTransferSyntax.h"
EXTEND_CLASS_PRINT(gdcm::TransferSyntax)
%include "gdcmFileMetaInformation.h"
EXTEND_CLASS_PRINT(gdcm::FileMetaInformation)

//%template(File) gdcm::SmartPointer<gdcm::File>;
//%ignore gdcm::File;

%include "gdcmFile.h"
EXTEND_CLASS_PRINT(gdcm::File)
//%include "gdcm_arrays_csharp.i"

%apply char[] { char* buffer }
%apply unsigned int[] { unsigned int dims[2] }
%apply unsigned int[] { unsigned int dims[3] }

//%apply byte OUTPUT[] { char* buffer } ;
//%ignore gdcm::Pixmap::GetBuffer(char*) const;
//%apply byte FIXED[] { char *buffer }
//%csmethodmodifiers gdcm::Pixmap::GetBuffer "public unsafe";
//%define %cs_marshal_array(TYPE, CSTYPE)
//       %typemap(ctype)  TYPE[] "void*"
//       %typemap(imtype, inattributes="[MarshalAs(UnmanagedType.LPArray)]") TYPE[] "CSTYPE[]"
//       %typemap(cstype) TYPE[] "CSTYPE[]"
//       %typemap(in)     TYPE[] %{ $1 = (TYPE*)$input; %}
//       %typemap(csin)   TYPE[] "$csinput"
//%enddef
//%cs_marshal_array(char, byte)
%include "gdcmBitmap.h"
EXTEND_CLASS_PRINT(gdcm::Bitmap)
%extend gdcm::Bitmap
{
  bool GetArray(unsigned char buffer[]) const {
    assert( $self->GetPixelFormat() == PixelFormat::UINT8 );
    return $self->GetBuffer((char*)buffer);
  }
  bool GetArray(char buffer[]) const {
    assert( $self->GetPixelFormat() == PixelFormat::INT8 );
    return $self->GetBuffer((char*)buffer);
  }
  bool GetArray(unsigned short buffer[]) const {
    assert( $self->GetPixelFormat() == PixelFormat::UINT16 );
    return $self->GetBuffer((char*)buffer);
  }
  bool GetArray(short buffer[]) const {
    assert( $self->GetPixelFormat() == PixelFormat::INT16 );
    return $self->GetBuffer((char*)buffer);
  }
  bool GetArray(float buffer[]) const {
    assert( $self->GetPixelFormat() == PixelFormat::FLOAT32 );
    return $self->GetBuffer((char*)buffer);
  }
  bool GetArray(double buffer[]) const {
    assert( $self->GetPixelFormat() == PixelFormat::FLOAT64 );
    return $self->GetBuffer((char*)buffer);
  }
};
%clear char* buffer;
%clear unsigned int* dims;

%include "gdcmIconImage.h"
EXTEND_CLASS_PRINT(gdcm::IconImage)
%include "gdcmPixmap.h"
EXTEND_CLASS_PRINT(gdcm::Pixmap)

%apply double[] { double spacing[3] }
%apply float[] { float origin[3] }
%apply double[] { double origin[3] }
%apply float[] { float dircos[6] }
%apply double[] { double dircos[6] }
//%apply double OUTPUT[] { const double* GetDirectionCosines() const }
/*
// https://stackoverflow.com/a/57071144/136285
%typemap(csout,excode=SWIGEXCODE) const double* gdcm::Image::GetDirectionCosines() const {
    global::System.IntPtr cPtr = $imcall;$excode
    double[] tmp = new double[6];
    // I have no idea why Marshal.Copy does not seem to have any support for unsigned types...
    global::System.Runtime.InteropServices.Marshal.Copy(cPtr, tmp, 0, 6);
    // There is probably a better way to go from int[3] -> uint[3], but it is not obvious to me
    //return new $typemap(cstype, $*1_type)[3]{($typemap(cstype, $*1_type))tmp[0],($typemap(cstype, $*1_type))tmp[1],($typemap(cstype, $*1_type))tmp[2]};
	return tmp;
}
%typemap(cstype) const double *gdcm::Image::GetDirectionCosines() const "$typemap(cstype, $*1_type)[]"
*/
%include "gdcmImage.h"
EXTEND_CLASS_PRINT(gdcm::Image)
%clear spacing;
%clear origin;
%clear dircos;

%include "gdcmFragment.h"
EXTEND_CLASS_PRINT(gdcm::Fragment)
// convert SWIGTYPE_p_std__vectorT_gdcm__Fragment_t__size_type
%template() std::vector< gdcm::Fragment >;
%include "gdcmPDBElement.h"
EXTEND_CLASS_PRINT(gdcm::PDBElement)
%include "gdcmPDBHeader.h"
EXTEND_CLASS_PRINT(gdcm::PDBHeader)
%include "gdcmCSAElement.h"
EXTEND_CLASS_PRINT(gdcm::CSAElement)
%include "gdcmCSAHeader.h"
EXTEND_CLASS_PRINT(gdcm::CSAHeader)
%include "gdcmSequenceOfFragments.h"
EXTEND_CLASS_PRINT(gdcm::SequenceOfFragments)
%include "gdcmBasicOffsetTable.h"
EXTEND_CLASS_PRINT(gdcm::BasicOffsetTable)
//%include "gdcmLO.h"
%include "gdcmFileSet.h"
EXTEND_CLASS_PRINT(gdcm::FileSet)

%include "gdcmGlobal.h"
EXTEND_CLASS_PRINT(gdcm::Global)

%include "gdcmDictEntry.h"
EXTEND_CLASS_PRINT(gdcm::DictEntry)
%include "gdcmCSAHeaderDictEntry.h"
EXTEND_CLASS_PRINT(gdcm::CSAHeaderDictEntry)

%include "gdcmDict.h"
EXTEND_CLASS_PRINT(gdcm::Dict)
%include "gdcmCSAHeaderDict.h"
EXTEND_CLASS_PRINT(gdcm::CSAHeaderDictEntry)
%include "gdcmDicts.h"
EXTEND_CLASS_PRINT(gdcm::Dicts)

%template (TagSetType) std::set<gdcm::Tag>;
%ignore gdcm::Reader::SetStream;
%include "gdcmReader.h"
//EXTEND_CLASS_PRINT(gdcm::Reader)
%include "gdcmPixmapReader.h"
//EXTEND_CLASS_PRINT(gdcm::PixmapReader)
%include "gdcmImageReader.h"
//EXTEND_CLASS_PRINT(gdcm::ImageReader)
%include "gdcmWriter.h"
//EXTEND_CLASS_PRINT(gdcm::Writer)
%include "gdcmPixmapWriter.h"
//EXTEND_CLASS_PRINT(gdcm::PixmapWriter)
%include "gdcmImageWriter.h"
//EXTEND_CLASS_PRINT(gdcm::ImageWriter)
%template (PairString) std::pair<std::string,std::string>;
//%template (MyM) std::map<gdcm::Tag,gdcm::ConstCharWrapper>;
%include "gdcmStringFilter.h"
//EXTEND_CLASS_PRINT(gdcm::StringFilter)
%include "gdcmUIDGenerator.h"
//EXTEND_CLASS_PRINT(gdcm::UIDGenerator)
%include "gdcmUUIDGenerator.h"
//EXTEND_CLASS_PRINT(gdcm::UUIDGenerator)
%template (ValuesType)      std::set<std::string>;
%rename (CSharpTagToValue) SWIGTagToValue;
#define GDCM_STATIC_ASSERT(x)
%include "gdcmAttribute.h"
%include "gdcmSubject.h"
%include "gdcmCommand.h"

%template(SmartPtrScan) gdcm::SmartPointer<gdcm::Scanner>;
%include "gdcmScanner.h"
EXTEND_CLASS_PRINT(gdcm::Scanner)
%template(SmartPtrStrictScan) gdcm::SmartPointer<gdcm::StrictScanner>;
%include "gdcmStrictScanner.h"
EXTEND_CLASS_PRINT(gdcm::StrictScanner)

%template(SmartPtrAno) gdcm::SmartPointer<gdcm::Anonymizer>;
//%ignore gdcm::Anonymizer::Anonymizer;


//%template(Anonymizer) gdcm::SmartPointer<gdcm::Anonymizer>;
//
//%ignore gdcm::Anonymizer;
//%feature("unref") Anonymizer "coucou $this->Delete();"
// http://www.swig.org/Doc1.3/SWIGPlus.html#SWIGPlus%5Fnn34
%include "gdcmAnonymizer.h"
%apply char[] { char* value_data }
%include "gdcmFileAnonymizer.h"
%clear char* value_data;

%apply char[] { char* array }
%template(SmartPtrFStreamer) gdcm::SmartPointer<gdcm::FileStreamer>;
%include "gdcmFileStreamer.h"
%clear char* array;

//EXTEND_CLASS_PRINT(gdcm::Anonymizer)
//%extend gdcm::Anonymizer
//{
//%typemap(cscode) gdcm::Anonymizer
//%{
//  public Anonymizer() : this(gdcmPINVOKE.Anonymizer_New(), false) {
//  }
//%}
//};

// System is a namespace in C#, need to rename to something different
%rename (PosixEmulation) System;
%include "gdcmSystem.h"
//EXTEND_CLASS_PRINT(gdcm::System)

%include "gdcmTrace.h"
//EXTEND_CLASS_PRINT(gdcm::Trace)
%include "gdcmUIDs.h"
EXTEND_CLASS_PRINT(gdcm::UIDs)
//%feature("director") gdcm::IPPSorter;

////////////////////////////////////////////////////////////////////////////
// cs_callback is used to marshall callbacks. It allows a C# function to
// be passed to C++ as a function pointer through P/Invoke, which has the
// ability to make unmanaged-to-managed thunks. It does NOT allow you to
// pass C++ function pointers to C#.
//
// I would have liked to support FastDelegate<...> as the C++ argument
// type; this would have involved the cs_callback2 macro... but it turns
// out not to work under default project settings because .NET functions
// use the __stdcall calling convention, but FastDelegate uses the default
// convention which tends to be something else (__fastcall?). So nevermind.
//
// Anyway, to use this macro you need to declare the function pointer type
// TYPE in the appropriate header file (including the calling convention),
// declare a delegate named after CSTYPE in your C# project, and use this
// macro in your .i file. Here is an example:
//
// in C++ header file (%include this header in your .i file):
// typedef void (__stdcall *Callback)(PCWSTR);
// void Foo(Callback c);
//
// in C# code:
// public delegate void CppCallback([MarshalAs(UnmanagedType.LPWStr)] string message);
//
// in your .i file:
// %cs_callback(Callback, CppCallback)
//
// Remember to invoke %cs_callback before any code involving Callback.
%define %cs_callback(TYPE, CSTYPE)
       %typemap(ctype) TYPE, TYPE& "void*"
       %typemap(in) TYPE  %{ $1 = (TYPE)$input; %}
       %typemap(in) TYPE& %{ $1 = (TYPE*)&$input; %}
       %typemap(imtype, out="IntPtr") TYPE, TYPE& "CSTYPE"
       %typemap(cstype, out="IntPtr") TYPE, TYPE& "CSTYPE"
       %typemap(csin) TYPE, TYPE& "$csinput"
%enddef
%define %cs_callback2(TYPE, CTYPE, CSTYPE)
       %typemap(ctype) TYPE "CTYPE"
       %typemap(in) TYPE %{ $1 = (TYPE)$input; %}
       %typemap(imtype, out="IntPtr") TYPE "CSTYPE"
       %typemap(cstype, out="IntPtr") TYPE "CSTYPE"
       %typemap(csin) TYPE "$csinput"
%enddef

%cs_callback(Sorter::SortFunction, Sorter::CppSortFunction)

%include "gdcmSorter.h"
EXTEND_CLASS_PRINT(gdcm::Sorter)
%include "gdcmIPPSorter.h"
EXTEND_CLASS_PRINT(gdcm::IPPSorter)
%include "gdcmSpectroscopy.h"
//EXTEND_CLASS_PRINT(gdcm::Spectroscopy)
%include "gdcmPrinter.h"
//EXTEND_CLASS_PRINT(gdcm::Printer)
%include "gdcmXMLPrinter.h"
//EXTEND_CLASS_PRINT(gdcm::XMLPrinter)
%include "gdcmDumper.h"
//EXTEND_CLASS_PRINT(gdcm::Dumper)
%include "gdcmOrientation.h"
EXTEND_CLASS_PRINT(gdcm::Orientation)
%include "gdcmDirectionCosines.h"
EXTEND_CLASS_PRINT(gdcm::DirectionCosines)

%include "gdcmFiducials.h"
%include "gdcmWaveform.h"
%include "gdcmPersonName.h"
%include "gdcmCurve.h"
%include "gdcmDICOMDIR.h"
%include "gdcmValidate.h"
%include "gdcmApplicationEntity.h"
%include "gdcmDictPrinter.h"
%include "gdcmFilenameGenerator.h"
%include "gdcmVersion.h"
EXTEND_CLASS_PRINT(gdcm::Version)
%include "gdcmFilename.h"
%include "gdcmEnumeratedValues.h"
%include "gdcmPatient.h"
%include "gdcmStudy.h"
%include "gdcmUsage.h"
%include "gdcmMacroEntry.h"
%include "gdcmModuleEntry.h"
EXTEND_CLASS_PRINT(gdcm::ModuleEntry)
%include "gdcmNestedModuleEntries.h"
%include "gdcmMacro.h"
%include "gdcmMacros.h"
%include "gdcmModule.h"
%include "gdcmModules.h"
%include "gdcmDefs.h"
%include "gdcmIOD.h"
%include "gdcmIODs.h"
%include "gdcmTableEntry.h"
%include "gdcmDefinedTerms.h"
%include "gdcmSeries.h"
%include "gdcmIODEntry.h"

%apply char[] { char* out }
%apply char[] { char* in }
%include "gdcmRescaler.h"
//EXTEND_CLASS_PRINT(gdcm::Rescaler)
%extend gdcm::Rescaler
{
  bool Rescale(double out[], const short in[], size_t n) {
    return $self->Rescale((char*)out, (char*)in, n);
  }
}
%clear char* out;
%clear char* in;

%include "gdcmSegmentedPaletteColorLookupTable.h"
%include "gdcmUnpacker12Bits.h"

%include "gdcmConfigure.h"
#ifdef GDCM_BUILD_TESTING
%include "gdcmTesting.h"
%ignore gdcm::Testing::ComputeMD5(const char *, const unsigned long , char []);
%ignore gdcm::Testing::ComputeFileMD5(const char*, char []);
%extend gdcm::Testing
{
  static const char *ComputeFileMD5(const char *filename) {
    static char buffer[33];
    gdcm::Testing::ComputeFileMD5(filename, buffer);
    return buffer;
  }
};
#endif
%include "gdcmTagPath.h"
%include "gdcmBitmapToBitmapFilter.h"
%include "gdcmPixmapToPixmapFilter.h"
//%ignore gdcm::ImageToImageFilter::GetOutput() const;
%include "gdcmImageToImageFilter.h"
%include "gdcmSOPClassUIDToIOD.h"
//%feature("director") Coder;
//%include "gdcmCoder.h"
//%feature("director") Decoder;
//%include "gdcmDecoder.h"
//%feature("director") Codec;
//%include "gdcmCodec.h"
%feature("director") ImageCodec;
%include "gdcmImageCodec.h"
%include "gdcmRLECodec.h"
%extend gdcm::RLECodec {
  static RLECodec *Cast(ImageCodec *ic) {
    return dynamic_cast<RLECodec*>(ic);
  }
};
%include "gdcmJPEGCodec.h"
%extend gdcm::JPEGCodec {
  static JPEGCodec *Cast(ImageCodec *ic) {
    return dynamic_cast<JPEGCodec*>(ic);
  }
};
%include "gdcmJPEGLSCodec.h"
%extend gdcm::JPEGLSCodec {
  static JPEGLSCodec *Cast(ImageCodec *ic) {
    return dynamic_cast<JPEGLSCodec*>(ic);
  }
};
%include "gdcmJPEG2000Codec.h"
%extend gdcm::JPEG2000Codec {
  static JPEG2000Codec *Cast(ImageCodec *ic) {
    return dynamic_cast<JPEG2000Codec*>(ic);
  }
};
%include "gdcmPNMCodec.h"
%include "gdcmImageChangeTransferSyntax.h"
%template(SmartPtrFCTS) gdcm::SmartPointer<gdcm::FileChangeTransferSyntax>;
%include "gdcmFileChangeTransferSyntax.h"
%include "gdcmImageApplyLookupTable.h"
%include "gdcmSplitMosaicFilter.h"
%include "gdcmImageChangePhotometricInterpretation.h"
%include "gdcmImageChangePlanarConfiguration.h"
%include "gdcmImageFragmentSplitter.h"
%include "gdcmDataSetHelper.h"
%include "gdcmFileExplicitFilter.h"
%template (DoubleArrayType) std::vector<double>;
%template (UShortArrayType) std::vector<unsigned short>;
%template (UIntArrayType) std::vector<unsigned int>;
%include "gdcmImageHelper.h"
%include "gdcmMD5.h"
%include "gdcmDummyValueGenerator.h"
%include "gdcmSHA1.h"
%include "gdcmBase64.h"
%include "gdcmCryptographicMessageSyntax.h"
%include "gdcmCryptoFactory.h"
%include "gdcmSpacing.h"
%include "gdcmIconImageGenerator.h"
%include "gdcmIconImageFilter.h"

%feature("director") SimpleSubjectWatcher;
%include "gdcmSimpleSubjectWatcher.h"
%include "gdcmDICOMDIRGenerator.h"
%include "gdcmFileDerivation.h"

// MEXD:
%template(DataSetArrayType) std::vector< gdcm::DataSet >;
%template(FileArrayType) std::vector< gdcm::File >;
%template(PresentationContextArrayType) std::vector< gdcm::PresentationContext >;
%template(KeyValuePairType) std::pair< gdcm::Tag, std::string>;
%template(KeyValuePairArrayType) std::vector< std::pair< gdcm::Tag, std::string> >;
%template(TagArrayType) std::vector< gdcm::Tag >;
%include "gdcmQueryBase.h"
%include "gdcmBaseRootQuery.h"
%include "gdcmQueryFactory.h"
%template(CharSetArrayType) std::vector< gdcm::ECharSet >;
%include "gdcmCompositeNetworkFunctions.h"
%include "gdcmPresentationContext.h"
//EXTEND_CLASS_PRINT(gdcm::PresentationContext)
%include "gdcmPresentationContextGenerator.h"
typedef int64_t time_t; // FIXME
%include "gdcmServiceClassUser.h"
%apply char[] { char* inReadBuffer }
%include "gdcmStreamImageReader.h"
%clear char* inReadBuffer;
%include "gdcmRegion.h"
EXTEND_CLASS_PRINT(gdcm::Region)
%include "gdcmBoxRegion.h"
EXTEND_CLASS_PRINT(gdcm::BoxRegion)
%apply char[] { char* inreadbuffer }
%include "gdcmImageRegionReader.h"
%clear char* inreadbuffer;
%include "gdcmJSON.h"
%include "gdcmFileDecompressLookupTable.h"