---
id: 493c4948-987a-482b-993c-733bdb3d1d6c
version: 1.0.0
authors:
  - github_account: suecharo
workflow:
  name: trimming_and_qc
  readme: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/README.md"
  language:
    type: CWL
    version: v1.0
  files:
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/CWL/wf/fastqc.cwl"
      target: fastqc.cwl
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/CWL/wf/trimming_and_qc.cwl"
      target: trimming_and_qc.cwl
      type: primary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/CWL/wf/trimmomatic_pe.cwl"
      target: trimmomatic_pe.cwl
      type: secondary
  testing:
    - id: test_1
      files:
        - url: "https://raw.githubusercontent.com/suecharo/gh-trs/4e7e2e3ddb42bdaaf5e294f4bf67319f23c4eaa4/tests/CWL/test/wf_params.json"
          target: wf_params.json
          type: wf_params
        - url: "https://raw.githubusercontent.com/suecharo/gh-trs/4e7e2e3ddb42bdaaf5e294f4bf67319f23c4eaa4/tests/CWL/test/ERR034597_1.small.fq.gz"
          target: ERR034597_1.small.fq.gz
          type: other
        - url: "https://raw.githubusercontent.com/suecharo/gh-trs/4e7e2e3ddb42bdaaf5e294f4bf67319f23c4eaa4/tests/CWL/test/ERR034597_2.small.fq.gz"
          target: ERR034597_2.small.fq.gz
          type: other