# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "gia"
version = "0.2.23"
description = "A tool for set theoretic operations of genomic intervals"
homepage = "https://noamteyssier.github.io/gia"
readme = "README.md"
keywords = [
    "genomics",
    "bioinformatics",
    "bed",
    "set",
    "interval",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/noamteyssier/gia"

[profile.release]
lto = true

[dependencies.anyhow]
version = "1.0.81"

[dependencies.bedrs]
version = "0.2.24"
features = [
    "serde",
    "rayon",
]

[dependencies.bstr]
version = "1.9.1"

[dependencies.clap]
version = "4.4.18"
features = ["derive"]

[dependencies.csv]
version = "1.3.0"

[dependencies.dashmap]
version = "5.5.3"
features = ["serde"]

[dependencies.faiquery]
version = "0.1.3"

[dependencies.flate2]
version = "1.0.28"

[dependencies.gzp]
version = "0.11.3"
features = ["deflate_rust"]
default-features = false

[dependencies.hashbrown]
version = "0.14.3"

[dependencies.human-sort]
version = "0.2.2"

[dependencies.memmap2]
version = "0.9.4"

[dependencies.niffler]
version = "2.5.0"
features = ["gz"]
default-features = false

[dependencies.paste]
version = "1.0.14"

[dependencies.rand]
version = "0.8.5"

[dependencies.rand_chacha]
version = "0.3.1"

[dependencies.rayon]
version = "1.10.0"

[dependencies.rust-htslib]
version = "0.46.0"
default-features = false

[dependencies.serde]
version = "1.0.197"
features = ["derive"]

[dev-dependencies.assert_cmd]
version = "2.0.14"

[dev-dependencies.predicates]
version = "3.1.0"