##fileformat=VCFv4.1 ##FILTER= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##ALT= ##FORMAT= ##FORMAT= ##FORMAT= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##contig= ##bcftools_viewVersion=1.19+htslib-1.19 ##bcftools_viewCommand=view -o chr22.bcf chr22.vcf.gz; Date=Mon Apr 8 14:28:36 2024 ##bcftools_viewCommand=view -o chr22.vcf chr22.bcf; Date=Mon Apr 8 15:47:24 2024 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097 HG00099 HG00100 HG00101 22 50300078 rs7410291 A G 100 PASS AN=2184;AVGPOST=0.989;THETA=0.0005;VT=SNP;RSQ=0.9856;ERATE=0.002;SNPSOURCE=LOWCOV;AA=N;AC=751;LDAF=0.3431;AF=0.34;ASN_AF=0.19;AMR_AF=0.2;AFR_AF=0.83;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.77,-5 0|0:0:-0.12,-0.62,-2.4 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.17,-0.5,-2.79 0|0:0:-0.03,-1.13,-5 22 50300086 rs147922003 C T 100 PASS ERATE=0.0005;AVGPOST=0.9963;AN=2184;AC=20;VT=SNP;THETA=0.0011;RSQ=0.8398;AA=c;SNPSOURCE=LOWCOV;LDAF=0.0091;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.75,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.03,-1.16,-5 22 50300101 rs114143073 G A 100 PASS AA=G;AN=2184;AC=20;THETA=0.0008;LDAF=0.0098;VT=SNP;RSQ=0.5919;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9891;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.09,-0.74,-5 0|0:0:-0.01,-1.85,-5 22 50300113 rs141778433 C T 100 PASS AC=12;AA=C;AN=2184;ERATE=0.0009;LDAF=0.0062;VT=SNP;RSQ=0.6756;SNPSOURCE=LOWCOV;AVGPOST=0.995;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.56,-5 0|0:0:-0.27,-0.43,-1.04 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.57,-3.59 0|0:0:-0.05,-0.93,-5 22 50300166 rs182170314 C T 100 PASS LDAF=0.0041;AA=C;THETA=0.0004;AN=2184;AC=8;AVGPOST=0.9981;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7909;ERATE=0.0007;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.16,-0.52,-3.09 0|0:0.05:-0.21,-0.46,-1.36 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.9,-5 22 50300187 rs115145310 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9975;LDAF=0.0117;VT=SNP;AC=23;RSQ=0.9169;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.03,-1.14,-5 22 50300268 rs186769856 T C 100 PASS AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;ERATE=0.0007;RSQ=0.5361;LDAF=0.0031;AVGPOST=0.9965;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.01,-1.66,-5 0|0:0.05:-0.11,-0.64,-4.1 22 50300346 rs77627744 G A 100 PASS ERATE=0.0005;AVGPOST=0.9966;AA=G;AN=2184;AC=26;RSQ=0.8953;LDAF=0.0125;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.01;ASN_AF=0.03;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.04,-1.09,-5 0|0:0:-0.07,-0.81,-3.44 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.07,-0.8,-5 22 50300423 rs193230365 G A 100 PASS ERATE=0.0004;RSQ=0.2924;AA=G;AN=2184;VT=SNP;LDAF=0.0007;AC=0;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.001;AF=0 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.14,-0.56,-2.66 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.02,-1.4,-5 0|0:0:-0.06,-0.89,-5 22 50300438 rs9627788 T C 100 PASS ERATE=0.0014;AN=2184;THETA=0.0031;VT=SNP;RSQ=0.9834;AC=764;SNPSOURCE=LOWCOV;AVGPOST=0.9867;LDAF=0.3497;AA=t;AF=0.35;ASN_AF=0.19;AMR_AF=0.2;AFR_AF=0.86;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.04,-1.06,-5 1|0:1:-0.22,-0.46,-1.27 0|0:0:-0.02,-1.38,-5 0|0:0:-0.03,-1.16,-5 22 50300526 rs151129704 G A 100 PASS AA=G;AN=2184;AC=8;AVGPOST=0.9947;THETA=0.0008;VT=SNP;ERATE=0.001;RSQ=0.5897;LDAF=0.0049;SNPSOURCE=LOWCOV;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.09,-0.74,-3.1 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.88,-5 0|0:0:-0.05,-0.93,-5 22 50300527 rs114659385 G A 100 PASS ERATE=0.0004;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;AC=23;RSQ=0.942;LDAF=0.0113;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.07,-0.84,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.91,-5 0|0:0:-0.05,-0.93,-5 22 50300562 rs9627789 A G 100 PASS AA=G;AN=2184;RSQ=0.9836;ERATE=0.0009;VT=SNP;THETA=0.0011;AC=588;SNPSOURCE=LOWCOV;LDAF=0.2687;AVGPOST=0.9911;AF=0.27;ASN_AF=0.18;AMR_AF=0.18;AFR_AF=0.54;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0.06,-0.87,-5 1|0:1:-0.19,-0.46,-2.21 0|0:0:-0.06,-0.9,-5 0|0:0:-0.02,-1.41,-5 22 50300672 rs73443949 C T 100 PASS ERATE=0.0004;LDAF=0.1067;AA=C;AC=232;AN=2184;AVGPOST=0.9975;THETA=0.0005;VT=SNP;RSQ=0.9904;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.06;AMR_AF=0.05;AFR_AF=0.27;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0.48,-0.48,-0.48 1|0:1:-4.4,-0.04,-1.09 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.05,-0.94,-5 22 50300835 rs141100913 G A 100 PASS AA=G;AN=2184;RSQ=0.7534;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-2.4,-5 0|0:0:-0.21,-0.44,-1.93 22 50300882 rs77481841 C A 100 PASS ERATE=0.0004;AA=C;AC=18;RSQ=0.9608;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9992;LDAF=0.008;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.94,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.01,-1.83,-5 22 50300995 rs77619365 G A 100 PASS ERATE=0.0004;RSQ=0.9958;AA=G;AN=2184;AC=107;VT=SNP;LDAF=0.0491;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9995;AF=0.05;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.16 GT:DS:GL 0|0:0:-0,-2.42,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.02,-1.35,-5 22 50301003 rs117571035 C T 100 PASS LDAF=0.0009;AA=C;RSQ=0.6968;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.41,-5 0|0:0:-0,-2.52,-5 0|0:0:-0,-2.21,-5 0|0:0:-0.23,-0.42,-1.48 0|0:0:-0.01,-1.56,-5 22 50301178 rs9616366 C T 100 PASS AA=T;AN=2184;AC=753;VT=SNP;THETA=0.0027;RSQ=0.9998;SNPSOURCE=LOWCOV;LDAF=0.3441;ERATE=0.0003;AVGPOST=0.9999;AF=0.34;ASN_AF=0.19;AMR_AF=0.2;AFR_AF=0.83;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.9,-5 0|0:0:-0.07,-0.83,-5 1|0:1:-5,-0,-2.49 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.64,-5 22 50301249 rs185633079 G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.64,-5 0|0:0:-0,-2.72,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.44,-5 22 50301251 rs73443951 C T 100 PASS LDAF=0.1106;AA=C;RSQ=0.9996;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=242;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;AF=0.11;ASN_AF=0.06;AMR_AF=0.05;AFR_AF=0.28;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:-0,-2.45,-5 1|0:1:-0.04,-1.04,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.93,-5 22 50301252 rs190097286 G A 100 PASS LDAF=0.0009;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9304;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0,-2.71,-5 0|0:0:-0.05,-1,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.97,-5 22 50301340 rs137922648 A C 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50301422 rs114335781 G A 100 PASS AC=28;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0018;RSQ=0.9965;ERATE=0.0003;LDAF=0.0128;AVGPOST=0.9999;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50301476 rs8135963 T C 100 PASS AA=C;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=754;THETA=0.0006;LDAF=0.3446;ERATE=0.0003;AVGPOST=0.9999;AF=0.35;ASN_AF=0.19;AMR_AF=0.2;AFR_AF=0.83;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50301488 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50301494 . G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50301584 . C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.8138;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50301622 . C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;RSQ=0.8457;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.43,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50301664 rs9627644 T C 100 PASS THETA=0.0009;AA=C;LDAF=0.2078;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.999;AC=455;AF=0.21;ASN_AF=0.09;AMR_AF=0.09;AFR_AF=0.62;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-4,-5 1|0:1:-5,-0,-3.44 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.22,-5 22 50301719 rs192916413 G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.8803;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.53,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-1.96,-5 0|0:0:-0,-3.66,-5 22 50301774 rs149477000 C T 100 PASS THETA=0.0009;ERATE=0.0004;LDAF=0.0013;AA=C;AN=2184;VT=SNP;RSQ=0.6185;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=3;AF=0.0014;ASN_AF=0.0017;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0,-2.57,-5 0|0:0:-0,-2.76,-5 22 50301899 rs138658289 C T 100 PASS ERATE=0.0004;LDAF=0.0013;AVGPOST=0.9983;AA=T;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4217;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.19,-0.46,-2.75 0|0:0:-0.07,-0.82,-5 0|0:0:-0.13,-0.58,-3.59 0|0:0:-0.19,-0.46,-2.06 0|0:0:-0.18,-0.46,-2.98 22 50301957 . C CT 425 PASS RSQ=0.8471;AN=2184;AVGPOST=0.9736;VT=INDEL;THETA=0.0005;LDAF=0.059;AC=135;ERATE=0.0007;AF=0.06;ASN_AF=0.06;AMR_AF=0.07;AFR_AF=0.002;EUR_AF=0.1 GT:DS:GL 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-4.2 0|0:0:0,-0.6,-8.4 0|0:0:0,0,0 22 50302015 rs59612223 C A 100 PASS AA=C;LDAF=0.0645;AN=2184;ERATE=0.0009;AVGPOST=0.9729;VT=SNP;AC=143;RSQ=0.8419;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.07;ASN_AF=0.05;AMR_AF=0.02;AFR_AF=0.2;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.24,-0.44,-1.16 0|0:0.05:-0.22,-0.42,-1.79 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.2,-0.44,-2.67 22 50302021 . CA C 298 PASS THETA=0.0015;AC=163;RSQ=0.9056;AN=2184;VT=INDEL;LDAF=0.0744;AVGPOST=0.9838;ERATE=0.0015;AF=0.07;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.12 GT:DS:GL 0|0:0:0,-0.9,-12.3 0|0:0:0,0,0 0|0:0.05:0,0,0 0|0:0:0,-0.3,-4.1 0|0:0:0,0,0 22 50302124 rs146271548 C T 100 PASS ERATE=0.0005;RSQ=0.9207;AA=C;AN=2184;LDAF=0.0102;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=21;AVGPOST=0.9982;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.12,-0.62,-3.22 0|0:0.05:-1.62,-0.01,-4.4 0|0:0:-0.2,-0.45,-1.85 0|0:0:-0.22,-0.42,-1.7 22 50302221 rs148469139 G A 100 PASS AC=7;ERATE=0.0004;RSQ=0.8652;AA=G;AN=2184;VT=SNP;LDAF=0.0034;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0.01,-1.62,-5 22 50302229 rs183994690 C G 100 PASS ERATE=0.0004;AA=C;RSQ=0.7151;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.88,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.01,-1.9,-5 22 50302265 rs114727878 G A 100 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9983;AA=G;AN=2184;RSQ=0.5925;VT=SNP;SNPSOURCE=LOWCOV;AC=3;LDAF=0.0017;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.64,-5 0|0:0:-0,-2.71,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0,-2.6,-5 22 50302267 rs188676427 G C 100 PASS ERATE=0.0004;THETA=0.0026;AA=G;AN=2184;VT=SNP;LDAF=0.0007;RSQ=0.6963;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-2.76,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0,-2.65,-5 22 50302269 rs141791452 A G 100 PASS RSQ=0.6252;AVGPOST=0.9994;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.39,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-3.09,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0,-3.15,-5 22 50302270 rs73181156 T C 100 PASS 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T C 100 PASS AVGPOST=1;LDAF=0.0004;THETA=0.0004;AA=T;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50303561 rs12167668 C T 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=1;AC=11;ERATE=0.0003;LDAF=0.005;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50303567 rs140835842 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0027;RSQ=0.854;LDAF=0.0011;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50303569 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50303575 rs144665682 G A 100 PASS AVGPOST=1;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0124;THETA=0.0008;VT=SNP;AC=27;ERATE=0.0003;AF=0.01;ASN_AF=0.04;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50303666 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50303705 . G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0018;RSQ=0.807;VT=SNP;SNPSOURCE=EXOME;AC=3;THETA=0.0003;AVGPOST=0.9992;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.46,-5 0|0:0:-0.03,-1.18,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.32,-5 22 50303748 rs191669043 T A 100 PASS AA=T;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.753;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.32,-5 0|0:0:-0,-3.22,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.85,-5 0|0:0:-0,-3.04,-5 22 50303881 rs183421194 C T 100 PASS AA=C;RSQ=0.6695;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-3.66,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-4.4,-5 22 50303990 rs7510834 C T 100 PASS ERATE=0.0004;AA=C;AC=169;AN=2184;AVGPOST=0.9979;LDAF=0.0763;THETA=0.0008;RSQ=0.989;VT=SNP;SNPSOURCE=LOWCOV;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0,-2.71,-5 0|0:0:0,-5,-5 22 50304068 rs76905919 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=0.9121;THETA=0.0006;ERATE=0.0003;AVGPOST=0.9992;AF=0.0037;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.07,-0.81,-3.3 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50304069 rs78916708 G A 100 PASS AC=35;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9981;THETA=0.0008;VT=SNP;LDAF=0.0162;RSQ=0.9553;ERATE=0.0006;AF=0.02;ASN_AF=0.03;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.03,-1.12,-4.7 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50304086 . A G 100 PASS THETA=0.0004;RSQ=0.8063;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50304136 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50304166 . T C 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.0007;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.03,-1.23,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50304192 rs117687848 C T 100 PASS ERATE=0.0005;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.002;AC=4;RSQ=0.9201;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50304232 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50304364 rs34385787 G A 100 PASS AA=G;AN=2184;LDAF=0.0199;VT=SNP;THETA=0.0006;RSQ=0.9925;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.02;AMR_AF=0.01;AFR_AF=0.08;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-2.42,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50304379 rs186021973 G A 100 PASS ERATE=0.0005;RSQ=0.9167;AVGPOST=0.9994;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0016;LDAF=0.0031;AF=0.0027;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50304388 rs138625642 G A 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;THETA=0.0012;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.51,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0,-3.21,-5 0|0:0:0,-5,-5 22 50304588 rs190040961 G A 100 PASS RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.42,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.19,-0.46,-2.38 0|0:0:-0,-3.62,-5 22 50304591 rs9616369 A C 100 PASS ERATE=0.0004;AA=C;LDAF=0.3432;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.998;RSQ=0.9973;SNPSOURCE=LOWCOV;AC=751;AF=0.34;ASN_AF=0.19;AMR_AF=0.2;AFR_AF=0.83;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.07,-0.83,-4.4 1|0:1:-4.7,-0.23,-0.39 0|0:0:-0.17,-0.49,-2.77 0|0:0:-0,-3.42,-5 22 50304652 rs182625141 G A 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.6112;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0,-2.48,-5 22 50304748 rs141641203 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.01;SNPSOURCE=LOWCOV;AC=21;RSQ=0.9623;AVGPOST=0.9992;AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.11,-0.65,-3.36 0|0:0:-0.03,-1.22,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.04,-1.11,-5 22 50304805 rs76115124 G A 100 PASS AA=G;AN=2184;RSQ=0.8603;VT=SNP;AVGPOST=0.993;AC=41;SNPSOURCE=LOWCOV;LDAF=0.0204;THETA=0.0007;ERATE=0.0006;AF=0.02;ASN_AF=0.07;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.04,-1.07,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.13,-0.59,-3.59 22 50304935 rs12167756 C A 100 PASS AC=105;ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9981;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.9854;LDAF=0.0481;AF=0.05;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.15 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-1.38,-0.02,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.01,-1.61,-5 22 50304943 rs186556145 G C 100 PASS LDAF=0.0013;RSQ=0.7265;AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.25,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.01,-1.77,-5 22 50305084 rs116244547 T C 100 PASS AC=7;ERATE=0.0004;LDAF=0.0042;AA=T;AN=2184;RSQ=0.8493;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;THETA=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.39,-5 0|0:0:-0,-3.07,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0,-2,-5 0|0:0:-0.11,-0.65,-4.7 22 50305113 rs75834079 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;AC=78;LDAF=0.0358;RSQ=0.9956;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;AF=0.04;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.11,-0.63,-4.7 22 50305152 rs138042259 G A 100 PASS THETA=0.0009;ERATE=0.0005;AVGPOST=0.9986;AA=G;AN=2184;LDAF=0.0057;VT=SNP;RSQ=0.887;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.14,-0.56,-3.4 0|0:0:-0.25,-0.4,-1.39 0|0:0:-0.06,-0.86,-5 0|0:0:-0.13,-0.6,-4.4 22 50305228 rs149528683 G A 100 PASS ERATE=0.0004;RSQ=0.8977;AA=G;AN=2184;AC=8;LDAF=0.0037;THETA=0.0005;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.01,-1.91,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.02,-1.26,-5 22 50305232 rs144170927 G A 100 PASS AA=G;AN=2184;THETA=0.0008;VT=SNP;AC=9;RSQ=0.9401;LDAF=0.0044;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.13,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0.04,-1.1,-5 22 50305244 rs62233158 G C 100 PASS ERATE=0.0004;LDAF=0.0772;AC=169;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9955;THETA=0.0003;AVGPOST=0.9992;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.38,-5 0|0:0:-0.02,-1.38,-5 0|0:0:-0,-2.61,-5 0|0:0:-0.11,-0.65,-4.7 22 50305326 rs192375298 C T 100 PASS ERATE=0.0005;LDAF=0.0036;AA=C;AN=2184;AVGPOST=0.9975;AC=6;VT=SNP;RSQ=0.7178;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.13,-0.6,-3.74 0|0:0:-0.12,-0.62,-4 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.48,-0.48,-0.48 22 50305361 rs183884936 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9976;THETA=0.0006;RSQ=0.5821;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=3;ERATE=0.0007;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.2,-0.44,-2.05 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.1,-0.67,-3.92 0|0:0.05:-0.07,-0.81,-5 22 50305362 rs62233159 G A 100 PASS THETA=0.0015;AA=G;AN=2184;VT=SNP;RSQ=0.977;SNPSOURCE=LOWCOV;LDAF=0.0795;ERATE=0.0006;AVGPOST=0.9958;AC=174;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.11,-0.67,-4.4 0|0:0:-0.21,-0.43,-1.96 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.07,-0.84,-5 22 50305373 rs188774935 T A 100 PASS THETA=0.0004;AA=T;AN=2184;RSQ=0.5993;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.11,-0.64,-4.1 0|0:0.15:-0.12,-0.62,-3.18 0|0:0:-0.1,-0.7,-4.22 0|0:0:-0.06,-0.86,-5 22 50305425 rs193302701 G T 100 PASS LDAF=0.0027;AA=g;THETA=0.0004;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;RSQ=0.9593;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.73,-5 22 50305461 rs9627790 T G 100 PASS AC=261;ERATE=0.0004;LDAF=0.1196;AA=T;AN=2184;VT=SNP;RSQ=0.9972;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.12;ASN_AF=0.07;AMR_AF=0.05;AFR_AF=0.41;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.06,-0.86,-5 22 50305493 rs147458958 C G 100 PASS LDAF=0.0086;AA=C;AC=18;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.9657;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.61,-5 22 50305502 rs184507994 C T 100 PASS ERATE=0.0005;LDAF=0.0021;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AC=2;AVGPOST=0.9974;RSQ=0.5449;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-2.88,-5 22 50305515 rs73443957 T C 100 PASS 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100 PASS THETA=0.0009;ERATE=0.0067;AVGPOST=0.9146;AC=85;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;LDAF=0.0674;RSQ=0.4768;AF=0.04;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.1;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.48,-0.48,-0.48 0|1:0.7:-0.18,-0.48,-2.04 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50306017 rs79695893 A T 100 PASS AVGPOST=0.9986;AN=2184;AC=20;THETA=0.0008;VT=SNP;AA=A;RSQ=0.9383;SNPSOURCE=LOWCOV;LDAF=0.0089;ERATE=0.0003;AF=0.01;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.02,-1.4,-5 22 50306079 rs73891167 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;RSQ=0.9796;LDAF=0.0369;THETA=0.0005;VT=SNP;AVGPOST=0.9976;AC=81;SNPSOURCE=LOWCOV;AF=0.04;AMR_AF=0.01;AFR_AF=0.14;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.03,-1.13,-5 0|0:0:-0.01,-1.86,-5 22 50306260 rs191709793 C T 100 PASS 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A G 100 PASS ERATE=0.0004;AVGPOST=0.9994;AN=2184;RSQ=0.7702;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.001;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.21,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.02,-1.32,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.03,-1.11,-5 22 50306741 rs9808886 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;AC=119;VT=SNP;THETA=0.0006;LDAF=0.0545;RSQ=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.05;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.19;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.88,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.12,-0.6,-4 0|0:0:-0.01,-1.9,-5 22 50306829 rs112936160 C G 100 PASS AA=C;LDAF=0.0016;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.7435;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50306847 rs114715263 G A 100 PASS AC=17;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9423;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.0082;AF=0.01;AFR_AF=0.03 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AC=7;AA=G;AN=2184;LDAF=0.0032;THETA=0.0008;VT=SNP;RSQ=0.9797;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9999;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0.01,-1.61,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50306969 rs56248708 G A 100 PASS THETA=0.0021;ERATE=0.0005;AVGPOST=1;AA=G;AN=2184;VT=SNP;LDAF=0.1147;RSQ=0.9998;AC=251;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.06;AMR_AF=0.1;AFR_AF=0.14;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.39,-5 0|0:0:-0,-2.16,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307139 rs190345740 G A 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0011;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307162 . C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.889;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307184 rs11705497 G T 100 PASS ERATE=0.0004;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.9978;LDAF=0.0794;AVGPOST=0.9995;AC=174;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.02;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307229 . CA C 213 PASS AC=17;THETA=0.0009;ERATE=0.0004;AN=2184;RSQ=0.8885;VT=INDEL;LDAF=0.0085;AVGPOST=0.9974;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-1.8,-25.9 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-8.6 0|0:0:0,0,0 22 50307236 . A C 100 PASS AN=2184;VT=SNP;RSQ=0.8803;AA=A;SNPSOURCE=EXOME;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307282 . G A 100 PASS THETA=0.0009;AA=G;AN=2184;RSQ=0.819;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307315 rs76707654 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9977;LDAF=0.037;VT=SNP;AC=81;THETA=0.0006;AVGPOST=0.9998;ERATE=0.0003;AF=0.04;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307366 rs143508665 C G 100 PASS AA=C;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0006;AC=11;ERATE=0.0003;LDAF=0.0051;AVGPOST=0.9999;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.24,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307386 . G A 100 PASS ERATE=0.0004;AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307487 rs182520339 G A 100 PASS RSQ=0.9181;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307531 rs148027863 C T 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307534 rs140846613 T C 100 PASS ERATE=0.0004;AVGPOST=1;AA=T;AN=2184;RSQ=0.9977;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;LDAF=0.0096;AC=21;AF=0.01;ASN_AF=0.03;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50307537 rs150163814 C A 100 PASS 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0|0:0:-0.05,-0.93,-5 0|0:0:-0,-4.7,-5 0|0:0.6:-1.68,-0.01,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-1.95,-5 22 50309907 rs149060749 A T 100 PASS ERATE=0.0004;RSQ=0.9813;AC=28;AN=2184;THETA=0.0005;VT=SNP;AA=A;LDAF=0.013;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.22,-0.42,-1.74 0|0:0:-0.01,-1.7,-5 0|0:0:-0.11,-0.63,-4.7 22 50309911 rs112813072 A T 100 PASS AA=T;AN=2184;LDAF=0.0995;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;AVGPOST=0.9955;AC=217;ERATE=0.0006;RSQ=0.9808;AF=0.1;ASN_AF=0.06;AMR_AF=0.04;AFR_AF=0.25;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.09,-0.71,-4.7 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.8,-5 22 50309915 rs9616205 A T 100 PASS LDAF=0.2567;AC=564;AN=2184;THETA=0.0031;AVGPOST=0.9776;VT=SNP;RSQ=0.9567;SNPSOURCE=LOWCOV;ERATE=0.0053;AA=a;AF=0.26;ASN_AF=0.16;AMR_AF=0.17;AFR_AF=0.53;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0.15:-0.15,-0.54,-3.21 1|0:0.75:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.12,-0.63,-4.7 22 50309953 rs187994023 G A 100 PASS AA=G;AN=2184;VT=SNP;LDAF=0.0019;THETA=0.0006;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.4252;AC=2;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.22,-0.46,-1.35 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0.12,-0.61,-4.4 22 50309997 rs9616374 G C 100 PASS ERATE=0.0005;THETA=0.0015;AVGPOST=0.9957;AA=g;AN=2184;RSQ=0.9825;LDAF=0.1177;AC=256;VT=SNP;SNPSOURCE=LOWCOV;AF=0.12;ASN_AF=0.06;AMR_AF=0.1;AFR_AF=0.15;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.03,-1.21,-5 1|0:1:-2.43,-0.44,-0.2 0|0:0:-0.22,-0.42,-1.74 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.34,-0.39,-0.87 22 50310046 rs55972549 T C 100 PASS LDAF=0.2196;AA=T;AN=2184;AC=480;AVGPOST=0.9975;VT=SNP;THETA=0.0006;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9933;AF=0.22;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.41;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.03,-1.22,-5 1|0:1:-5,-0,-4.4 1|0:1:-4.7,-0.67,-0.1 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.34,-0.39,-0.87 22 50310254 rs75839612 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0097;SNPSOURCE=LOWCOV;AC=21;RSQ=0.9562;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.01,-1.88,-5 22 50310410 rs73443968 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=224;VT=SNP;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.1022;RSQ=0.9962;AF=0.1;ASN_AF=0.06;AMR_AF=0.04;AFR_AF=0.26;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.54,-5 1|0:1:-5,0,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.85,-5 22 50310600 rs9616375 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=256;THETA=0.0005;LDAF=0.1171;VT=SNP;RSQ=0.9965;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.12;ASN_AF=0.06;AMR_AF=0.1;AFR_AF=0.15;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.06,-0.86,-5 1|0:1:-3.92,-0,-3.8 0|0:0:-0.05,-1,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.26,-5 22 50310621 rs192992771 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.86;VT=SNP;LDAF=0.0026;AVGPOST=0.9991;THETA=0.0056;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.02,-1.35,-5 22 50310650 rs78313798 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0006;SNPSOURCE=LOWCOV;AC=4;RSQ=0.855;ERATE=0.0003;LDAF=0.0017;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.03,-1.15,-5 22 50310682 rs184258077 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.5581;VT=SNP;THETA=0.0011;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.01,-1.92,-5 22 50310829 rs9616376 A G 100 PASS AN=2184;LDAF=0.2164;THETA=0.0008;RSQ=0.9876;VT=SNP;AC=473;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9941;AF=0.22;ASN_AF=0.12;AMR_AF=0.14;AFR_AF=0.39;EUR_AF=0.21 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G GC 305 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.9698;AN=2184;AC=460;VT=INDEL;AVGPOST=0.9859;LDAF=0.2088;AF=0.21;ASN_AF=0.12;AMR_AF=0.14;AFR_AF=0.37;EUR_AF=0.21 GT:DS:GL 0|0:0:0,-0.9,-11.7 1|0:0.85:0,0,0 1|0:0.95:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50310880 rs9616377 T C 100 PASS AC=464;RSQ=0.9695;AA=C;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.9855;LDAF=0.2112;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.21;ASN_AF=0.12;AMR_AF=0.14;AFR_AF=0.38;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.05,-0.99,-5 1|0:0.85:-0.11,-0.64,-4.1 1|0:0.95:-0.11,-0.64,-3.25 0|0:0:-0.13,-0.59,-3.8 0|0:0:-0.19,-0.46,-2.16 22 50310881 . TC T 384 PASS THETA=0.0004;AN=2184;AC=460;VT=INDEL;ERATE=0.0008;RSQ=0.9666;AVGPOST=0.9844;LDAF=0.2093;AF=0.21;ASN_AF=0.12;AMR_AF=0.14;AFR_AF=0.38;EUR_AF=0.21 GT:DS:GL 0|0:0:0,-0.9,-14.3 1|0:0.9:0,0,0 1|0:0.95:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50310882 rs79393060 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;RSQ=0.9754;AVGPOST=0.9879;THETA=0.0019;SNPSOURCE=LOWCOV;LDAF=0.2117;AC=466;AF=0.21;ASN_AF=0.12;AMR_AF=0.14;AFR_AF=0.38;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.06,-0.89,-5 1|0:0.9:-0.19,-0.45,-2.13 1|0:0.95:-0.08,-0.78,-4 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.19,-0.45,-2.15 22 50310919 rs28397081 A G 100 PASS AVGPOST=0.9985;AN=2184;VT=SNP;AA=A;AC=33;RSQ=0.9626;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;LDAF=0.0158;AF=0.02;ASN_AF=0.04;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.01,-1.55,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.02,-1.34,-5 22 50311021 rs147017708 G A 100 PASS ERATE=0.0004;LDAF=0.0009;AA=G;AN=2184;RSQ=0.5775;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0,-2.2,-5 0|0:0:-0.01,-1.51,-5 22 50311076 . TG T 183 PASS ERATE=0.0004;AC=28;LDAF=0.0127;AN=2184;VT=INDEL;THETA=0.0055;AVGPOST=0.9988;RSQ=0.9574;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-1.5,-21.6 0|0:0:0,-0.3,-4.3 0|0:0:0,-1.2,-13 0|0:0:0,-1.2,-15.8 0|0:0:0,-0.3,-4.3 22 50311091 rs189566669 G A 100 PASS ERATE=0.0004;THETA=0.0044;AA=G;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9989;RSQ=0.4932;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.09,-0.74,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.12,-0.63,-4 22 50311116 rs12166055 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.004;LDAF=0.0109;VT=SNP;AC=22;SNPSOURCE=LOWCOV;RSQ=0.9225;AVGPOST=0.9982;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.2,-0.44,-2.02 22 50311206 rs11703207 C T 100 PASS AA=C;AN=2184;RSQ=0.9753;VT=SNP;THETA=0.0006;LDAF=0.0771;SNPSOURCE=LOWCOV;AC=170;AVGPOST=0.9955;ERATE=0.0006;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.01,-1.5,-5 1|0:1:-5,-0.7,-0.1 0|0:0:-0.12,-0.63,-4 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0.11,-0.63,-4 22 50311291 rs141861124 G T 100 PASS ERATE=0.0005;LDAF=0.0033;AA=G;AN=2184;THETA=0.0031;RSQ=0.6371;VT=SNP;AC=5;AVGPOST=0.997;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.36,-5 0|0:0:-0.12,-0.62,-5 22 50311304 rs150640302 A T 100 PASS THETA=0.0009;ERATE=0.0005;LDAF=0.0024;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9987;RSQ=0.7488;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.61,-5 0|0:0:-0.04,-1.05,-5 22 50311473 . A AT 249 PASS ERATE=0.0004;LDAF=0.0884;AN=2184;VT=INDEL;AVGPOST=0.9915;AC=195;RSQ=0.9624;THETA=0.0034;AF=0.09;ASN_AF=0.06;AMR_AF=0.04;AFR_AF=0.2;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-0.3,-3.9 0|0:0:0,0,0 1|0:1:-4.5,-0.3,0 0|0:0:0,-0.3,-3.9 0|0:0:0,0,0 22 50311579 rs9627793 C T 100 PASS LDAF=0.0486;RSQ=0.9262;AN=2184;VT=SNP;AA=c;AVGPOST=0.9916;SNPSOURCE=LOWCOV;AC=102;ERATE=0.0012;THETA=0.0007;AF=0.05;ASN_AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.79,-3.19 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.18,-0.47,-3.06 22 50311582 rs80187840 C G 100 PASS THETA=0.0021;AA=C;LDAF=0.0374;AN=2184;AVGPOST=0.9924;AC=80;VT=SNP;ERATE=0.001;RSQ=0.9205;SNPSOURCE=LOWCOV;AF=0.04;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-2.27 0|0:0:-0.1,-0.71,-4.7 0|0:0:-0.18,-0.47,-3.05 22 50311596 rs9627794 G A 100 PASS 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A G 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;THETA=0.0019;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50315413 rs28473584 C T 100 PASS AA=C;AC=153;LDAF=0.07;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;THETA=0.0008;VT=SNP;RSQ=0.9983;ERATE=0.0003;AF=0.07;ASN_AF=0.05;AMR_AF=0.04;AFR_AF=0.12;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50315421 rs8138558 G A 100 PASS AC=7;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0032;THETA=0.0005;VT=SNP;RSQ=0.9872;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50315507 rs58550845 C CT 504 PASS AN=2184;LDAF=0.1319;VT=INDEL;THETA=0.0027;ERATE=0.0008;AVGPOST=0.9955;RSQ=0.985;AC=287;AF=0.13;ASN_AF=0.05;AMR_AF=0.05;AFR_AF=0.36;EUR_AF=0.08 GT:DS:GL 0|0:0:0,-0.9,-10.8 0|0:0:0,-0.3,-3.6 0|1:1:-4.2,-0.3,0 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100 PASS THETA=0.0021;ERATE=0.0004;AA=C;RSQ=0.8519;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.23,-5 0|0:0:-0.03,-1.17,-5 0|0:0:0,-5,-5 22 50315902 rs117735284 G C 100 PASS ERATE=0.0004;RSQ=0.9136;THETA=0.0143;LDAF=0.0078;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=15;AVGPOST=0.9984;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.94,-5 0|0:0:0,-5,-5 22 50315924 rs7410765 G T 100 PASS RSQ=0.9909;AC=260;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.1188;AVGPOST=0.9968;THETA=0.0016;ERATE=0.0003;AF=0.12;ASN_AF=0.05;AMR_AF=0.06;AFR_AF=0.3;EUR_AF=0.08 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|1:1:-5,0,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 22 50315928 rs7410274 C G 100 PASS 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0|0:0:-0,-2.29,-5 0|0:0:-0,-3.28,-5 0|0:0:-0.38,-0.24,-5 0|0:0:-0,-3.17,-5 0|0:0:0,-5,-5 22 50316016 . G A 100 PASS ERATE=0.0004;THETA=0.0039;RSQ=0.7304;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.66,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.06,-5 0|0:0:0,-5,-5 22 50316026 rs145697592 G A 100 PASS RSQ=0.7999;THETA=0.0026;LDAF=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.3,-5 0|0:0:0,-5,-5 22 50316038 rs186623329 C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0066;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.18,-5 0|0:0:0,-5,-5 22 50316073 . A G 100 PASS ERATE=0.0004;AVGPOST=1;LDAF=0.0009;RSQ=0.9768;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;THETA=0.0051;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.8,-5 0|0:0:0,-5,-5 22 50316158 rs189692296 G T 100 PASS ERATE=0.0004;AVGPOST=1;LDAF=0.0009;AA=g;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.18,-5 0|0:0:0,-5,-5 22 50316192 rs180893288 A T 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;THETA=0.0016;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.05,-0.95,-5 0|0:0:0,-5,-5 22 50316227 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0031;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-4.4,-5 22 50316288 . G A 100 PASS RSQ=0.911;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0011;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-3.3,-5 22 50316364 . C T 100 PASS AA=C;AN=2184;RSQ=0.6303;VT=SNP;THETA=0.0046;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.09,-0.71,-4.7 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.02,-1.39,-5 22 50316369 rs9616209 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9825;THETA=0.0008;VT=SNP;AC=386;ERATE=0.0033;AVGPOST=0.9928;LDAF=0.1771;AF=0.18;ASN_AF=0.09;AMR_AF=0.13;AFR_AF=0.35;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.15,-0.53,-3.21 1|0:1:-5,-0.02,-1.26 0|0:0:-0,-3.36,-5 0|0:0:-0.07,-0.84,-5 0|0:0.05:-0.03,-1.18,-5 22 50316374 rs12171243 G A 100 PASS AC=301;ERATE=0.0004;RSQ=0.992;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.1376;THETA=0.0007;AVGPOST=0.9974;AF=0.14;ASN_AF=0.1;AMR_AF=0.06;AFR_AF=0.36;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-2.76,-5 0|1:1:-5,-0.02,-1.41 0|0:0:-0.06,-0.9,-5 0|0:0:-0.05,-0.95,-5 22 50316444 rs12152125 A G 100 PASS AVGPOST=0.9232;AN=2184;RSQ=0.8691;VT=SNP;ERATE=0.0059;LDAF=0.2949;SNPSOURCE=LOWCOV;AA=a;AC=619;THETA=0.0007;AF=0.28;ASN_AF=0.15;AMR_AF=0.17;AFR_AF=0.61;EUR_AF=0.22 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 1|0:1:-0.33,-0.43,-0.79 0|1:0.6:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.9 22 50316471 rs190968664 A G 100 PASS LDAF=0.2323;AN=2184;RSQ=0.1881;VT=SNP;THETA=0.0006;AC=177;SNPSOURCE=LOWCOV;AVGPOST=0.6569;AA=a;ERATE=0.0304;AF=0.08;ASN_AF=0.06;AMR_AF=0.06;AFR_AF=0.17;EUR_AF=0.05 GT:DS:GL 0|0:0.3:-0.18,-0.47,-2.36 0|0:0.6:-0.35,-0.43,-0.73 0|1:0.9:-0.48,-0.48,-0.48 0|0:0.35:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 22 50316539 rs61510346 A C 100 PASS LDAF=0.1231;AC=223;THETA=0.0035;AN=2184;AVGPOST=0.8837;RSQ=0.5877;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.004;AA=a;AF=0.1;ASN_AF=0.05;AMR_AF=0.09;AFR_AF=0.17;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 1|0:0.7:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.49 0|0:0.05:-0.48,-0.48,-0.48 22 50316571 . GAGGT G 35 PASS ERATE=0.0063;LDAF=0.0917;AN=2184;AVGPOST=0.8883;AC=128;VT=INDEL;THETA=0.0017;RSQ=0.495;AF=0.06;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.16;EUR_AF=0.03 GT:DS:GL 0|0:0.1:0,0,0 0|0:0.2:0,0,0 0|0:0.1:0,0,0 0|0:0.4:0,0,0 0|0:0:0,0,0 22 50316597 rs56351880 A G 100 PASS RSQ=0.9551;LDAF=0.2511;AA=G;AN=2184;VT=SNP;AVGPOST=0.9753;THETA=0.0017;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=552;AF=0.25;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.49;EUR_AF=0.21 GT:DS:GL 0|0:0.05:-0.48,-0.48,-0.48 1|0:1:-2.9,-0.49,-0.17 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.19,-0.46,-2.16 22 50316643 rs148937327 G A 100 PASS ERATE=0.0004;AC=18;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;THETA=0.003;RSQ=0.9119;SNPSOURCE=LOWCOV;LDAF=0.008;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.13,-0.6,-2.19 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.04,-1.01,-5 22 50316712 rs80177491 G C 100 PASS THETA=0.0021;ERATE=0.0005;LDAF=0.0112;AA=G;AN=2184;VT=SNP;AC=23;AVGPOST=0.9976;SNPSOURCE=LOWCOV;RSQ=0.9369;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.13,-0.6,-2.98 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0,-2.21,-5 22 50316797 rs56265042 G A 100 PASS ERATE=0.0004;RSQ=0.9889;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=172;AVGPOST=0.998;LDAF=0.0784;SNPSOURCE=LOWCOV;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.13 GT:DS:GL 0|0:0:-0,-2.27,-5 1|0:1:-0.2,-0.44,-2.08 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.88,-5 0|0:0:-0.01,-1.9,-5 22 50316835 rs7410304 T C 100 PASS LDAF=0.2728;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;AC=597;THETA=0.0025;AVGPOST=0.9928;ERATE=0.0012;RSQ=0.9872;AF=0.27;ASN_AF=0.18;AMR_AF=0.17;AFR_AF=0.54;EUR_AF=0.22 GT:DS:GL 0|0:0:-1.24,-0.03,-5 1|0:1:-0.12,-0.63,-3.28 0|1:1:-0.22,-0.46,-1.27 0|0:0:-0,-3.18,-5 0|0:0:-0.01,-1.69,-5 22 50316901 rs111557567 C T 100 PASS ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0054;VT=SNP;THETA=0.0011;AC=11;RSQ=0.9323;AVGPOST=0.9992;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.05,-0.93,-3.85 0|0:0:-0,-2.94,-5 0|0:0:-0,-2.67,-5 22 50316902 rs143760812 G A 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0014;AC=3;AVGPOST=0.9999;RSQ=0.9562;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.58,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.04,-1.06,-4.4 0|0:0:-0,-3.01,-5 0|0:0:-0,-2.65,-5 22 50316906 rs145684970 C T 100 PASS RSQ=0.9779;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;THETA=0.0008;VT=SNP;AC=15;LDAF=0.007;ERATE=0.0007;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.05,-0.99,-4.22 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.88,-5 22 50316925 rs139427507 G A 100 PASS THETA=0.0009;ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;RSQ=0.8702;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.02,-1.29,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.14,-5 22 50317001 . G GCACT 233 PASS AC=205;AN=2184;ERATE=0.0302;VT=INDEL;THETA=0.0006;RSQ=0.5909;LDAF=0.1367;AVGPOST=0.8824;AF=0.09;ASN_AF=0.06;AMR_AF=0.04;AFR_AF=0.22;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-1.5,-28.5 0|0:0.45:0,0,0 0|0:0.2:0,0,0 0|0:0.45:0,0,0 0|0:0.15:0,0,0 22 50317004 rs114717108 G A 100 PASS AC=12;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0056;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.22,-5 0|0:0:-0,-2.61,-5 0|0:0:-0,-3.3,-5 0|0:0:0,-5,-5 22 50317049 rs7410318 T C 100 PASS ERATE=0.0004;AVGPOST=0.9986;LDAF=0.2573;AA=C;AN=2184;RSQ=0.9976;VT=SNP;THETA=0.0011;AC=563;SNPSOURCE=LOWCOV;AF=0.26;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.52;EUR_AF=0.21 GT:DS:GL 0|0:0:-0,-2.21,-5 1|0:1:-1.15,-0.03,-5 0|1:1:-5,0,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-3.02,-5 22 50317145 rs73181164 A G 100 PASS AC=171;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0781;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9979;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.13 GT:DS:GL 0|0:0:-0,-2.02,-5 1|0:1:-5,-0.2,-0.44 0|0:0:-0,-2.81,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0,-3.27,-5 22 50317187 rs7410601 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.9963;AN=2184;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;LDAF=0.2646;AC=578;THETA=0.0003;AF=0.26;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.53;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.66,-5 1|0:1:-0.07,-0.83,-5 0|1:1:-4.4,-0,-2.65 0|0:0:-0.03,-1.15,-5 0|0:0:-0.04,-1.1,-5 22 50317227 rs182799796 G A 100 PASS THETA=0.005;AA=G;AN=2184;LDAF=0.0037;AC=6;RSQ=0.6606;AVGPOST=0.9967;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.13,-0.6,-3.07 0|0:0:-0.21,-0.44,-1.95 0|0:0:-0.09,-0.75,-5 0|0:0:-0.11,-0.66,-4.7 22 50317232 rs78134869 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;LDAF=0.0064;AC=14;RSQ=0.9156;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9987;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.07,-0.83,-5 0|0:0:-0.11,-0.65,-4.7 22 50317296 rs7410612 C T 100 PASS THETA=0.0009;ERATE=0.0013;AA=T;AN=2184;RSQ=0.9767;LDAF=0.2296;AVGPOST=0.9894;VT=SNP;AC=497;SNPSOURCE=LOWCOV;AF=0.23;ASN_AF=0.21;AMR_AF=0.16;AFR_AF=0.33;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.01,-1.63,-5 1|0:1:-3.7,-0,-5 0|1:1:-5,-0.38,-0.24 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-2.04,-5 22 50317330 rs7410537 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9972;VT=SNP;THETA=0.0006;RSQ=0.9952;SNPSOURCE=LOWCOV;AC=562;LDAF=0.2577;AF=0.26;ASN_AF=0.16;AMR_AF=0.15;AFR_AF=0.51;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.01,-1.76,-5 1|0:1:-3.22,-0,-5 0|1:1:-5,-1.27,-0.02 0|0:0:-0.04,-1.08,-5 0|0:0:-0.01,-1.8,-5 22 50317333 rs188268529 A C 100 PASS ERATE=0.0004;AN=2184;RSQ=0.8671;AVGPOST=0.9996;VT=SNP;AA=A;LDAF=0.0014;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.08,-5 22 50317346 rs9616210 C T 100 PASS AA=C;AVGPOST=0.9983;AN=2184;AC=277;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.1269;ERATE=0.0003;RSQ=0.9947;AF=0.13;ASN_AF=0.06;AMR_AF=0.1;AFR_AF=0.19;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.03,-1.21,-5 1|0:1:-5,-0,-4.7 0|0:0:-0,-2.31,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.02,-1.34,-5 22 50317401 rs11912619 G A 100 PASS RSQ=0.9885;AC=561;AN=2184;THETA=0.0005;VT=SNP;AA=A;AVGPOST=0.9938;LDAF=0.2551;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.26;ASN_AF=0.16;AMR_AF=0.15;AFR_AF=0.51;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.01,-1.78,-5 1|0:0.95:-0.53,-0.15,-5 0|1:1:-5,-0,-3.92 0|0:0:-0,-2.29,-5 0|0:0:-0,-3.36,-5 22 50317410 rs71711537 C CTG 875 PASS AN=2184;ERATE=0.0034;AVGPOST=0.9846;VT=INDEL;THETA=0.0005;LDAF=0.336;RSQ=0.9788;AC=745;AF=0.34;ASN_AF=0.19;AMR_AF=0.2;AFR_AF=0.81;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-1.2,-18.4 1|0:0.9:0,-0.3,-4.6 0|1:1:0,-0.9,-13.8 0|0:0:0,-0.6,-9.2 0|0:0:0,-0.3,-4.6 22 50317418 rs191858878 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=13;RSQ=0.8656;VT=SNP;LDAF=0.0061;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9974;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.8,-5 0|1:0.95:-0.88,-0.06,-5 0|0:0:-0,-2.21,-5 0|0:0:-0,-2.1,-5 22 50317569 rs9627797 G A 100 PASS AC=285;ERATE=0.0005;RSQ=0.9911;THETA=0.0032;AA=G;AN=2184;VT=SNP;LDAF=0.131;SNPSOURCE=LOWCOV;AVGPOST=0.9974;AF=0.13;ASN_AF=0.1;AMR_AF=0.06;AFR_AF=0.32;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.21,-0.43,-1.97 0|1:1:-1.85,-0.03,-1.22 0|0:0:-0.11,-0.66,-3.8 0|0:0:-0.03,-1.12,-5 22 50317676 rs9616211 G A 100 PASS AVGPOST=0.9986;LDAF=0.2579;AC=564;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.997;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.26;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.52;EUR_AF=0.21 GT:DS:GL 0|0:0.05:-0.18,-0.47,-2.8 1|0:1:-3.4,-0,-5 0|1:1.3:-5,-2.77,-0 0|0:0:-0.03,-1.16,-5 0|0:0:-0.03,-1.12,-5 22 50317687 rs9616212 G A 100 PASS ERATE=0.0004;LDAF=0.2579;AC=564;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.9984;AVGPOST=0.9992;AF=0.26;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.52;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.18,-0.47,-2.8 1|0:1:-5,0,-5 0|1:1.25:-5,-2.15,-0 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.38,-5 22 50317714 rs12168949 A G 100 PASS AC=285;AN=2184;LDAF=0.1303;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;RSQ=0.9991;AF=0.13;ASN_AF=0.1;AMR_AF=0.06;AFR_AF=0.32;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.18,-0.47,-2.8 0|0:0:-0,-2.82,-5 0|1:1:-5,-0.99,-0.05 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.34,-5 22 50317803 rs9616395 A G 100 PASS 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THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.9978;SNPSOURCE=LOWCOV;AC=280;ERATE=0.0003;LDAF=0.1282;AF=0.13;ASN_AF=0.1;AMR_AF=0.06;AFR_AF=0.31;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-3.22,-5 0|1:1:-5,-0,-3.74 0|0:0:-0,-2.49,-5 0|0:0:-0.01,-1.62,-5 22 50317875 rs142854078 G A 100 PASS RSQ=0.9159;AA=G;AN=2184;VT=SNP;THETA=0.0017;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0015;AVGPOST=0.9995;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.41,-5 0|0:0:-0,-2.55,-5 0|0:0:-0,-2.32,-5 22 50317948 rs182162003 G T 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0014;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.9756;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.85,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.15,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.22,-5 22 50317980 . G A 100 PASS AVGPOST=1;LDAF=0.0004;AA=g;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.95,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.76,-5 22 50317989 rs9627799 C T 100 PASS AA=C;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=282;VT=SNP;RSQ=0.9995;LDAF=0.1288;ERATE=0.0003;AVGPOST=0.9999;AF=0.13;ASN_AF=0.1;AMR_AF=0.06;AFR_AF=0.32;EUR_AF=0.06 GT:DS:GL 0|0:0:-0,-2.66,-5 0|0:0:0,-5,-5 0|1:1:-5,-0,-4.22 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.25,-5 22 50318061 rs113168785 G C 100 PASS ERATE=0.0005;LDAF=0.0133;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=29;RSQ=0.9916;VT=SNP;AVGPOST=0.9998;THETA=0.0007;AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50318079 . G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50318090 rs148356973 C T 100 PASS AVGPOST=1;LDAF=0.0027;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;VT=SNP;RSQ=1;THETA=0.001;ERATE=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50318091 rs115155882 G A 100 PASS RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50318128 rs186783231 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;THETA=0.001;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.1,-5 22 50318199 rs116175248 T C 100 PASS AC=7;THETA=0.0009;LDAF=0.0033;AA=C;AN=2184;RSQ=0.9799;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.38,-5 0|0:0:-0,-2.97,-5 22 50318292 rs192419536 G A 100 PASS ERATE=0.0004;RSQ=0.6695;AA=g;AN=2184;VT=SNP;LDAF=0.0026;AC=5;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.01,-1.52,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.1,-0.7,-5 22 50318312 rs7290751 T C 100 PASS ERATE=0.0004;RSQ=0.9934;AA=C;THETA=0.0004;AN=2184;LDAF=0.2565;AVGPOST=0.9967;VT=SNP;AC=563;SNPSOURCE=LOWCOV;AF=0.26;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.52;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 1|0:1:-0.48,-0.48,-0.48 0|1:1:-2.21,-0.02,-1.47 0|0:0:-0.06,-0.92,-5 0|0:0:-0.1,-0.7,-5 22 50318402 rs141565628 C T 100 PASS AC=7;ERATE=0.0004;RSQ=0.7977;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9984;LDAF=0.0031;AF=0.0032;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.38 0|0:0:-0.12,-0.61,-3.11 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.15,-0.53,-5 0|0:0:-0.1,-0.69,-5 22 50318422 rs12170530 T G 100 PASS ERATE=0.0004;AC=561;RSQ=0.9945;AA=G;AN=2184;VT=SNP;LDAF=0.2557;THETA=0.0056;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.26;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.51;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 1|0:1:-5,-0.72,-0.09 0|1:1:-0.21,-0.47,-1.35 0|0:0:-0.07,-0.85,-5 0|0:0:-0.09,-0.71,-5 22 50318445 rs185780803 C T 100 PASS AA=C;THETA=0.0032;AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.8323;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.08,-0.77,-3.11 0|0:0:-0.06,-0.89,-5 0|0:0:-0.17,-0.5,-3.52 22 50318506 rs113800028 C T 100 PASS AA=C;AN=2184;AC=513;THETA=0.0031;ERATE=0.0009;LDAF=0.2318;VT=SNP;RSQ=0.9457;AVGPOST=0.9694;SNPSOURCE=LOWCOV;AF=0.23;ASN_AF=0.14;AMR_AF=0.14;AFR_AF=0.49;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0.35:-0.12,-0.61,-3.12 0|0:0.05:-0.2,-0.44,-2.06 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.18,-0.46,-3.03 22 50318509 rs144434757 C G 100 PASS ERATE=0.0004;THETA=0.0004;LDAF=0.2177;AA=G;AN=2184;RSQ=0.9399;AVGPOST=0.9659;VT=SNP;SNPSOURCE=LOWCOV;AC=479;AF=0.22;ASN_AF=0.14;AMR_AF=0.12;AFR_AF=0.46;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0.15:-0.12,-0.63,-3.28 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.18,-0.47,-3.09 22 50318510 rs139790283 A G 100 PASS AVGPOST=0.9658;AA=G;AN=2184;LDAF=0.2164;THETA=0.0008;VT=SNP;AC=473;RSQ=0.938;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.22;ASN_AF=0.14;AMR_AF=0.12;AFR_AF=0.45;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0.15:-0.12,-0.63,-3.3 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0.18,-0.47,-3.08 22 50318514 rs112352679 T C 100 PASS THETA=0.0009;RSQ=0.9333;LDAF=0.2191;AA=C;AN=2184;VT=SNP;AC=484;ERATE=0.001;AVGPOST=0.9634;SNPSOURCE=LOWCOV;AF=0.22;ASN_AF=0.14;AMR_AF=0.12;AFR_AF=0.47;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0.15:-0.08,-0.79,-4.7 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.18,-0.47,-3.09 22 50318518 rs7291072 T C 100 PASS ERATE=0.0005;AVGPOST=0.9664;AA=C;AN=2184;VT=SNP;RSQ=0.9404;LDAF=0.2185;SNPSOURCE=LOWCOV;THETA=0.0007;AC=479;AF=0.22;ASN_AF=0.14;AMR_AF=0.12;AFR_AF=0.46;EUR_AF=0.17 GT:DS:GL 0|0:0.05:-0.03,-1.18,-5 0|0:0.1:-0.08,-0.8,-4.7 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.46,-2.43 0|0:0:-0.18,-0.47,-3.08 22 50318621 rs9616397 T C 100 PASS ERATE=0.0013;AC=581;THETA=0.0054;AVGPOST=0.9571;AN=2184;VT=SNP;LDAF=0.2753;SNPSOURCE=LOWCOV;RSQ=0.9198;AA=t;AF=0.27;ASN_AF=0.19;AMR_AF=0.21;AFR_AF=0.49;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.01,-1.55,-5 1|0:0.7:-0.48,-0.48,-0.48 0|1:1.15:-0.48,-0.48,-0.48 0|0:0.05:-0.19,-0.47,-2.07 0|0:0:-0.2,-0.44,-2.65 22 50318622 rs189862150 A G 100 PASS AN=2184;VT=SNP;RSQ=0.5548;AVGPOST=0.9959;LDAF=0.0039;SNPSOURCE=LOWCOV;AC=4;AA=a;THETA=0.0007;ERATE=0.0006;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.64,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.14 0|0:0:-0.2,-0.44,-2.65 22 50318639 rs145146257 C T 100 PASS THETA=0.0009;AC=18;RSQ=0.4391;AN=2184;ERATE=0.0024;VT=SNP;AA=c;AVGPOST=0.9771;LDAF=0.0166;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.06 0|0:0:-0.2,-0.44,-2.67 22 50318640 rs144007559 G A 100 PASS ERATE=0.0004;LDAF=0.0137;AA=g;AC=28;AN=2184;VT=SNP;AVGPOST=0.9964;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.8867;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.15 0|0:0:-0.2,-0.44,-2.62 22 50318648 rs193164989 G A 100 PASS 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C T 100 PASS AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;THETA=0.0029;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50320921 rs151286715 G A 100 PASS AVGPOST=1;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50320943 rs1608 C T 100 PASS LDAF=0.1029;THETA=0.0015;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=225;AVGPOST=0.9996;VT=SNP;ERATE=0.0012;RSQ=0.9985;AF=0.1;ASN_AF=0.05;AMR_AF=0.05;AFR_AF=0.24;EUR_AF=0.08 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50320994 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50321044 rs183678533 C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;RSQ=0.9756;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50321063 rs74379580 C G 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0179;AC=39;RSQ=0.9962;AF=0.02;ASN_AF=0.03;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50321189 rs140500145 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0,-2.46,-5 0|0:0:-0.06,-0.89,-5 0|0:0:0,-5,-5 22 50321193 rs73443986 C T 100 PASS ERATE=0.0013;AA=T;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0999;THETA=0.0091;RSQ=0.9913;SNPSOURCE=LOWCOV;AC=217;AF=0.1;ASN_AF=0.05;AMR_AF=0.05;AFR_AF=0.24;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.23,-5 0|1:1:-5,-0,-2.08 0|0:0:-0.06,-0.88,-5 0|0:0:-0,-4.7,-5 22 50321272 rs150445531 G A 100 PASS ERATE=0.0005;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.755;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.04,-1.08,-5 0|0:0:-0.12,-0.63,-3.27 0|0:0:-0.02,-1.28,-5 0|0:0.1:-1.58,-0.01,-5 0|0:0:-0.01,-1.66,-5 22 50321290 rs11703995 G A 100 PASS THETA=0.0009;ERATE=0.0005;AVGPOST=0.9904;AA=G;AN=2184;LDAF=0.0222;VT=SNP;RSQ=0.8305;AC=43;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.82,-5 0|0:0.3:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-4 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.69,-5 22 50321296 rs73891180 A G 100 PASS 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ERATE=0.0005;AA=C;AN=2184;LDAF=0.0084;VT=SNP;RSQ=0.8177;AC=15;SNPSOURCE=LOWCOV;THETA=0.007;AVGPOST=0.9965;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.37,-5 0|0:0:-0.01,-1.66,-5 22 50321739 rs189074207 C T 100 PASS ERATE=0.0004;THETA=0.0015;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5192;AVGPOST=0.9984;LDAF=0.0012;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.65,-5 0|0:0:-0.07,-0.85,-5 22 50321746 rs11442399 G GT 769 PASS AN=2184;VT=INDEL;THETA=0.003;ERATE=0.0114;AVGPOST=0.9198;LDAF=0.1813;RSQ=0.7804;AC=356;AF=0.16;ASN_AF=0.13;AMR_AF=0.21;AFR_AF=0.21;EUR_AF=0.13 GT:DS:GL 0|0:0.05:0,-0.3,-3.5 1|0:0.65:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-4.2 0|0:0.1:0,0,0 22 50321801 rs143460685 G T 100 PASS AC=12;ERATE=0.0005;RSQ=0.6391;THETA=0.0044;AA=G;AN=2184;VT=SNP;LDAF=0.0085;SNPSOURCE=LOWCOV;AVGPOST=0.9926;AF=0.01;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01 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50324702 rs185517271 T C 100 PASS RSQ=0.6829;AA=T;AN=2184;VT=SNP;THETA=0.0027;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2,-5 0|0:0:-0,-2.23,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.11,-0.64,-4.1 22 50324894 rs148525380 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.6395;LDAF=0.0007;THETA=0.0017;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.23,-5 0|0:0:-0,-2.61,-5 0|0:0:-0,-2.24,-5 0|0:0:-0.11,-0.64,-4 22 50325067 rs142882173 G A 100 PASS ERATE=0.0005;LDAF=0.0013;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;RSQ=0.4383;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50325071 rs190601156 C T 100 PASS ERATE=0.0004;RSQ=0.4926;AA=C;AN=2184;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AVGPOST=0.9987;AF=0.0005;EUR_AF=0.0013 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CTTTAGATG C 570 PASS AN=2184;AVGPOST=0.9979;VT=INDEL;LDAF=0.0324;THETA=0.0006;AC=71;ERATE=0.0003;RSQ=0.9756;AF=0.03;ASN_AF=0.04;AMR_AF=0.01;AFR_AF=0.06;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-1.2,-50.6 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-1.2,-49.4 0|0:0:0,0,0 22 50325526 rs182846491 G A 100 PASS AVGPOST=0.9994;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.0028;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9115;AF=0.0027;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0,-3.13,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.01,-1.79,-5 22 50325552 rs115237081 T C 100 PASS AC=7;AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9436;LDAF=0.0034;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.01,-1.55,-5 22 50325556 rs73181176 T A 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9987;LDAF=0.0824;AC=180;RSQ=0.9921;AF=0.08;ASN_AF=0.07;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.05,-0.94,-5 1|0:1:-4.7,-0,-2.92 0|1:1:-5,-0,-3.1 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.86,-5 22 50325667 rs187741751 C T 100 PASS ERATE=0.0005;LDAF=0.0009;RSQ=0.5518;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.05,-0.98,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.06,-0.88,-5 22 50325691 rs147968792 T C 100 PASS ERATE=0.0004;RSQ=0.9258;AA=T;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.001;AC=11;LDAF=0.0055;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.01,-1.61,-5 0|0:0:-0.06,-0.87,-5 22 50325701 rs80051013 A G 100 PASS ERATE=0.0005;AVGPOST=0.9977;RSQ=0.9838;AN=2184;VT=SNP;AC=135;AA=A;THETA=0.0017;SNPSOURCE=LOWCOV;LDAF=0.0618;AF=0.06;ASN_AF=0.06;AMR_AF=0.06;AFR_AF=0.04;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2.04,-5 1|0:1:-5,-0.05,-0.95 0|0:0:-0.04,-1.11,-5 22 50325712 rs140603828 T C 100 PASS THETA=0.0009;AA=T;AN=2184;AC=16;VT=SNP;AVGPOST=0.9956;LDAF=0.0085;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.7698;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.33,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.61,-5 22 50325714 rs73443996 T C 100 PASS AC=140;ERATE=0.0004;RSQ=0.9807;AA=T;AN=2184;VT=SNP;AVGPOST=0.9969;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0643;AF=0.06;ASN_AF=0.06;AMR_AF=0.06;AFR_AF=0.05;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.32,-5 0|0:0:-0.01,-1.83,-5 1|0:1:-5,-0.05,-0.99 0|0:0:-0.01,-1.59,-5 22 50325734 rs28703242 T G 100 PASS RSQ=0.9668;AA=T;AN=2184;AVGPOST=0.9947;VT=SNP;AC=135;LDAF=0.0631;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0007;AF=0.06;ASN_AF=0.05;AMR_AF=0.01;AFR_AF=0.21 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.01,-1.81,-5 0|0:0:-0.1,-0.7,-4.1 0|0:0:-0.01,-1.62,-5 22 50325770 rs28417096 C T 100 PASS ERATE=0.0014;AA=T;AN=2184;LDAF=0.2611;AC=571;RSQ=0.9584;VT=SNP;AVGPOST=0.9778;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.26;ASN_AF=0.16;AMR_AF=0.18;AFR_AF=0.5;EUR_AF=0.22 GT:DS:GL 0|0:0:-0.19,-0.47,-2.34 1|0:0.95:-2.9,-0.49,-0.17 0|1:1:-2.33,-0.02,-1.37 1|0:1.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50325778 rs115368812 G A 100 PASS AVGPOST=0.9857;AA=G;AN=2184;VT=SNP;LDAF=0.0223;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=36;THETA=0.0007;RSQ=0.7395;AF=0.02;AMR_AF=0.0028;AFR_AF=0.05;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.23,-0.45,-1.23 0|0:0:-0.48,-0.48,-0.48 0|0:0.45:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50325784 rs116836187 G A 100 PASS AA=G;AN=2184;AC=77;THETA=0.0005;VT=SNP;LDAF=0.0402;AVGPOST=0.9756;SNPSOURCE=LOWCOV;ERATE=0.0012;RSQ=0.7716;AF=0.04;ASN_AF=0.0017;AMR_AF=0.04;AFR_AF=0.07;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|1:0.95:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50325875 rs150076662 T C 100 PASS AVGPOST=0.9939;AA=T;AN=2184;ERATE=0.0009;THETA=0.0008;VT=SNP;AC=34;SNPSOURCE=LOWCOV;RSQ=0.8591;LDAF=0.0175;AF=0.02;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.02,-1.36,-5 22 50325891 rs28707249 G A 100 PASS LDAF=0.0835;AA=G;AN=2184;AVGPOST=0.9934;VT=SNP;RSQ=0.965;THETA=0.0017;SNPSOURCE=LOWCOV;AC=183;ERATE=0.0007;AF=0.08;ASN_AF=0.07;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.05,-0.95,-5 1|0:1:-5,-0,-3.66 0|1:1:-5,-0,-3.74 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.58,-5 22 50325936 . TTTTA T 227 PASS AN=2184;AC=518;RSQ=0.95;VT=INDEL;THETA=0.0005;ERATE=0.0012;AVGPOST=0.9739;LDAF=0.2365;AF=0.24;ASN_AF=0.15;AMR_AF=0.17;AFR_AF=0.46;EUR_AF=0.19 GT:DS:GL 0|0:0:0,-1.2,-29.2 1|0:0.9:0,0,0 0|1:0.95:0,0,0 0|0:0.05:0,-0.3,-6.4 0|0:0:0,0,0 22 50326016 rs192195989 C T 100 PASS AN=2184;AVGPOST=0.9917;VT=SNP;AC=23;ERATE=0.001;AA=c;THETA=0.003;LDAF=0.013;SNPSOURCE=LOWCOV;RSQ=0.7131;AF=0.01;ASN_AF=0.03;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.6,-5 0|0:0.1:-0.12,-0.61,-3.85 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-3.8 0|0:0:-0.26,-0.4,-1.3 22 50326018 rs183466580 C T 100 PASS AVGPOST=0.9986;AA=C;THETA=0.0004;AN=2184;AC=13;RSQ=0.8991;VT=SNP;LDAF=0.0064;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.55 0|0:0:-0.48,-0.48,-0.48 22 50326116 rs149266090 C T 100 PASS 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AA=G;AN=2184;VT=SNP;AC=865;RSQ=0.9949;AVGPOST=0.9959;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;LDAF=0.3959;AF=0.4;ASN_AF=0.21;AMR_AF=0.27;AFR_AF=0.89;EUR_AF=0.28 GT:DS:GL 0|0:0:-0,-2.35,-5 1|0:1:-5,-0,-3.4 0|1:1:-2.24,-0.02,-1.52 1|0:1.05:-0.2,-0.44,-2.09 0|0:0:-0.01,-1.89,-5 22 50332266 rs149317891 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0019;RSQ=0.5752;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.12,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.36,-5 22 50332273 rs144642985 C G 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.8112;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=3;LDAF=0.0017;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.02,-1.37,-5 22 50332294 rs148084296 G T 100 PASS AVGPOST=0.9985;LDAF=0.0016;RSQ=0.6865;AA=G;AN=2184;VT=SNP;THETA=0.0018;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.22,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0.04,-1.11,-5 22 50332319 rs141864763 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;RSQ=0.8758;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-2,-5 0|0:0:-0.04,-1.04,-4.4 0|0:0:-0.06,-0.91,-5 0|0:0:-0.06,-0.86,-5 22 50332324 rs28523661 T C 100 PASS ERATE=0.0013;AA=C;AN=2184;AVGPOST=0.9455;THETA=0.0008;RSQ=0.9305;VT=SNP;LDAF=0.562;SNPSOURCE=LOWCOV;AC=1226;AF=0.56;ASN_AF=0.52;AMR_AF=0.41;AFR_AF=0.94;EUR_AF=0.42 GT:DS:GL 0|0:0:-0.01,-1.76,-5 1|0:0.95:-0,-2.15,-5 0|1:1:-1.3,-0.02,-3.04 1|0:1.2:-5,-0.68,-0.1 0|1:0.95:-2.31,-0,-4.7 22 50332377 rs114353012 C T 100 PASS ERATE=0.0004;RSQ=0.7754;AA=C;AVGPOST=0.9994;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.06,-0.86,-4.4 0|0:0:-0.02,-1.34,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.05,-0.95,-5 22 50332472 rs115364094 C G 100 PASS AA=C;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;RSQ=0.953;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.03,-1.24,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.16,-0.51,-2.6 0|0:0:-0.11,-0.66,-4.7 22 50332541 rs184874245 G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0023;RSQ=0.4573;AVGPOST=0.997;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;ASN_AF=0.0035;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.13,-0.6,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.08,-5 0|0:0:-0.12,-0.6,-3.7 22 50332591 rs78026043 T TG 623 PASS THETA=0.0015;AN=2184;VT=INDEL;AVGPOST=0.9791;ERATE=0.0017;LDAF=0.3932;AC=859;RSQ=0.9733;AF=0.39;ASN_AF=0.2;AMR_AF=0.27;AFR_AF=0.89;EUR_AF=0.27 GT:DS:GL 0|0:0:0,-1.2,-12.2 1|0:1:0,0,0 0|1:1:0,0,0 1|0:1:0,0,0 0|0:0.05:0,0,0 22 50332761 rs147245555 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;THETA=0.0005;LDAF=0.0109;VT=SNP;AC=22;AVGPOST=0.998;RSQ=0.9264;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.91,-5 0|0:0:-0.19,-0.45,-2.21 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.12,-0.61,-4 0|0:0:-0.48,-0.48,-0.48 22 50332821 rs187748680 A T 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.8116;AN=2184;VT=SNP;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0.12,-0.62,-3.22 0|0:0:-0.01,-1.78,-5 0|0:0.05:-0.06,-0.91,-5 0|0:0:-0.12,-0.63,-3.92 22 50332873 rs192368046 A G 100 PASS ERATE=0.0004;RSQ=0.8749;AN=2184;LDAF=0.0046;THETA=0.0008;VT=SNP;AA=A;AC=9;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.0041;AMR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.31,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.53,-5 22 50332899 rs184537478 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.5718;AVGPOST=0.9969;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=4;THETA=0.001;LDAF=0.0031;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0.12,-0.61,-3.13 0|0:0:-0.22,-0.42,-1.69 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.65,-4.7 22 50332900 rs140771050 G A 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=G;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5069;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.59,-5 0|0:0:-0.12,-0.63,-3.27 0|0:0.05:-0.2,-0.45,-2.14 0|0:0:-0.13,-0.59,-3.25 0|0:0:-0.11,-0.64,-4.7 22 50333089 rs189315629 C T 100 PASS AN=2184;THETA=0.0008;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=3;ERATE=0.0007;RSQ=0.3978;AVGPOST=0.9951;LDAF=0.0031;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.25,-0.4,-1.38 0|0:0:-0.19,-0.47,-2.09 0|0:0:-0.11,-0.64,-4.7 22 50333107 rs144735579 G A 100 PASS ERATE=0.0005;AA=g;AN=2184;RSQ=0.8797;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AC=21;THETA=0.0024;LDAF=0.0104;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.55,-3.25 0|0:0.05:-0.06,-0.86,-5 0|0:0:-0.04,-1.07,-5 22 50333120 rs192670586 A G 100 PASS ERATE=0.0004;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;AA=a;RSQ=0.4102;AVGPOST=0.9987;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.06,-0.89,-3.85 0|0:0:-0.06,-0.88,-4.7 0|0:0:-0.06,-0.9,-5 0|0:0:-0.04,-1.1,-5 22 50333130 rs77002698 G A 100 PASS RSQ=0.7981;AA=g;AVGPOST=0.9362;LDAF=0.1576;AN=2184;ERATE=0.0288;AC=302;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AF=0.14;ASN_AF=0.1;AMR_AF=0.15;AFR_AF=0.09;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.02,-1.46,-5 1|0:1:-1.58,-0.01,-3.3 0|1:1:-4.7,-0,-2.16 0|0:0.35:-0.09,-0.71,-4.7 0|0:0:-0.02,-1.27,-5 22 50333253 rs116837852 G A 100 PASS AA=g;RSQ=0.9525;AN=2184;AC=29;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.002;ERATE=0.0003;AVGPOST=0.9984;LDAF=0.0128;AF=0.01;AMR_AF=0.0028;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-2.42,-5 0|0:0:-0,-2.91,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.13,-0.59,-4.1 22 50333301 rs184281961 C A 100 PASS LDAF=0.0021;AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9976;RSQ=0.5164;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.17,-0.5,-2.81 0|0:0:-0.02,-1.32,-5 22 50333415 rs4073387 G A 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9983;AN=2184;RSQ=0.9916;VT=SNP;LDAF=0.0963;SNPSOURCE=LOWCOV;AC=209;THETA=0.0007;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.06,-0.92,-5 1|0:1:-1.67,-0.01,-3.85 0|1:1:-4.22,-0,-4 0|0:0:-0.11,-0.67,-3.92 0|0:0:-0.12,-0.63,-4 22 50333682 rs147501622 A G 100 PASS ERATE=0.0005;AN=2184;THETA=0.0008;VT=SNP;AC=10;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9931;RSQ=0.5997;LDAF=0.0069;AF=0.0046;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.8 0|0:0.2:-0.08,-0.76,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.45,-2.11 22 50333697 rs4073388 C G 100 PASS RSQ=0.9785;AVGPOST=0.9957;LDAF=0.0962;AA=G;AN=2184;ERATE=0.0009;VT=SNP;SNPSOURCE=LOWCOV;AC=209;THETA=0.0051;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.18,-0.47,-2.8 1|0:0.95:-0.08,-0.76,-4 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.18,-5 0|0:0:-0.2,-0.45,-2.1 22 50333748 rs114900897 C T 100 PASS RSQ=0.9837;AA=C;AN=2184;VT=SNP;AVGPOST=0.9993;AC=41;LDAF=0.0189;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.09,-0.72,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.12,-0.63,-4 22 50333851 rs150059836 C T 100 PASS AA=C;AN=2184;VT=SNP;AC=10;LDAF=0.0056;ERATE=0.0008;RSQ=0.8499;SNPSOURCE=LOWCOV;THETA=0.0052;AVGPOST=0.9978;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.09,-0.73,-5 22 50333919 . T TTTTC 220 PASS AVGPOST=0.9902;AN=2184;VT=INDEL;THETA=0.0005;LDAF=0.0879;AC=195;ERATE=0.0003;RSQ=0.9538;AF=0.09;ASN_AF=0.06;AMR_AF=0.11;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:0,-1.5,-16.1 1|0:0.9:0,0,0 0|1:0.85:0,0,0 0|0:0:0,-0.6,-8.4 0|0:0:0,0,0 22 50333920 . T TTTC 259 PASS THETA=0.0004;AN=2184;LDAF=0.0893;VT=INDEL;RSQ=0.9472;AVGPOST=0.9886;ERATE=0.0007;AC=197;AF=0.09;ASN_AF=0.06;AMR_AF=0.11;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:0,-1.5,-16.3 1|0:0.9:0,0,0 0|1:0.85:0,0,0 0|0:0.05:0,-0.6,-7.9 0|0:0:0,0,0 22 50333921 . T TTC 180 PASS ERATE=0.0004;LDAF=0.0881;AC=196;AVGPOST=0.99;AN=2184;VT=INDEL;RSQ=0.9523;THETA=0.0012;AF=0.09;ASN_AF=0.06;AMR_AF=0.11;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:0,-1.8,-19.4 1|0:0.9:0,0,0 0|1:0.85:0,0,0 0|0:0:0,-0.6,-7.3 0|0:0:0,0,0 22 50333922 . T TC 143 PASS ERATE=0.0004;AVGPOST=0.9877;AN=2184;VT=INDEL;THETA=0.0041;RSQ=0.9417;AC=193;LDAF=0.0861;AF=0.09;ASN_AF=0.06;AMR_AF=0.11;AFR_AF=0.01;EUR_AF=0.15 GT:DS:GL 0|0:0:0,-1.8,-18.9 1|0:0.9:0,0,0 0|1:0.85:0,0,0 0|0:0:0,-0.6,-6.9 0|0:0:0,0,0 22 50333960 rs145434623 C G 100 PASS THETA=0.0009;AA=C;AN=2184;LDAF=0.0239;VT=SNP;AC=51;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9712;AVGPOST=0.9982;AF=0.02;AMR_AF=0.0028;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.18,-0.48,-2.48 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.06,-0.89,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.13,-0.58,-3.49 22 50334019 rs149220023 A G 100 PASS ERATE=0.0004;RSQ=0.9336;AN=2184;VT=SNP;AC=23;LDAF=0.0113;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0.13,-0.57,-3.4 0|0:0:-0.06,-0.9,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.14,-0.57,-3.36 22 50334114 rs143961875 T C 100 PASS 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AVGPOST=0.9904;AC=30;AA=C;AN=2184;LDAF=0.0168;VT=SNP;THETA=0.0018;RSQ=0.7725;ERATE=0.0008;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.11,-0.66,-5 0|0:0:-0.09,-0.75,-3.85 0|0:0:-0,-2.2,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.04,-1.09,-5 22 50335298 rs183496054 A G 100 PASS ERATE=0.0004;LDAF=0.0009;THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.5642;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.07,-0.84,-3.59 0|0:0:-0.73,-0.09,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.1,-0.67,-5 22 50335357 rs143085536 G A 100 PASS THETA=0.0009;ERATE=0.0004;AA=G;AN=2184;AC=16;RSQ=0.9498;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9992;LDAF=0.0077;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.12,-0.62,-2.39 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.03,-1.13,-5 0|0:0:-0.05,-0.96,-5 22 50335399 rs186863582 T A 100 PASS AA=T;AN=2184;LDAF=0.0015;VT=SNP;THETA=0.0006;AVGPOST=0.9989;RSQ=0.6582;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.02,-1.34,-5 22 50335557 rs147494457 C T 100 PASS LDAF=0.0013;AA=C;AVGPOST=0.9983;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4243;ERATE=0.0006;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.2,-0.44,-2.03 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.11,-0.64,-4 0|0:0:-0.18,-0.46,-3 22 50335558 rs148559677 G A 100 PASS ERATE=0.0004;RSQ=0.527;AA=G;AN=2184;VT=SNP;LDAF=0.0026;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=4;THETA=0.001;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.23,-0.46,-1.24 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.18,-0.47,-3.08 22 50335661 . AGT A 183 PASS AVGPOST=0.9963;AN=2184;VT=INDEL;AC=23;THETA=0.0011;RSQ=0.8676;LDAF=0.0119;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-0.6,-11 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-11 0|0:0:0,0,0 22 50335692 rs114093594 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;RSQ=0.9619;VT=SNP;AC=51;THETA=0.003;AVGPOST=0.998;LDAF=0.0242;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.07,-0.84,-4.4 0|0:0:-0.04,-1.02,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.06,-0.89,-5 22 50335768 rs191655893 G A 100 PASS ERATE=0.0004;AVGPOST=0.9983;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.0034;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.7767;AF=0.0027;AMR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0:-0.11,-0.65,-3.11 0|0:0:-0.11,-0.64,-3.22 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.11,-0.64,-4.7 22 50335830 rs142900433 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.8439;AN=2184;AC=6;VT=SNP;THETA=0.0027;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.0031;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.01,-1.5,-5 0|0:0:-0.08,-0.77,-3.1 0|0:0:-0.02,-1.32,-5 0|0:0:-0.19,-0.46,-2.15 22 50335839 rs28470568 G T 100 PASS ERATE=0.0005;AA=G;AN=2184;AC=214;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.986;AVGPOST=0.9968;LDAF=0.0981;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 1|0:1:-5,-0.04,-1.03 0|1:1.05:-2.8,-0.5,-0.17 0|0:0:-0.04,-1.06,-5 0|0:0:-0.19,-0.46,-2.17 22 50335841 rs183121241 G A 100 PASS AA=G;AN=2184;RSQ=0.7755;VT=SNP;THETA=0.003;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AVGPOST=0.9987;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.56,-5 0|0:0:-0.08,-0.77,-3.09 0|0:0:-0.04,-1.06,-5 0|0:0:-0.2,-0.45,-2.1 22 50335965 rs77321569 A C 100 PASS AN=2184;RSQ=0.6855;VT=SNP;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AC=2;AVGPOST=0.9992;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.27,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.03,-1.13,-5 22 50335976 rs139952625 C T 100 PASS AC=7;AVGPOST=0.9963;AA=C;RSQ=0.6792;THETA=0.0022;LDAF=0.0047;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0032;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.85,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.65,-5 22 50335981 rs188004042 G A 100 PASS AA=G;AN=2184;LDAF=0.0018;VT=SNP;RSQ=0.6957;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.002;AC=3;ERATE=0.0007;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.64,-5 22 50336003 rs71758248 GTGAA G 1105 PASS LDAF=0.1018;RSQ=0.9819;AC=223;AN=2184;VT=INDEL;THETA=0.0008;ERATE=0.0006;AVGPOST=0.996;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.03;EUR_AF=0.17 GT:DS:GL 0|0:0:0,-1.5,-38.1 1|0:1:-5.2,-0.3,0 0|1:1:0,0,0 0|0:0:0,-1.5,-38.1 0|0:0:0,0,0 22 50336087 rs191871297 A C 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-2.11,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.02,-1.35,-5 22 50336118 rs28759049 G C 100 PASS RSQ=0.9931;THETA=0.0004;AA=G;AN=2184;AC=220;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;LDAF=0.1007;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.03;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.01,-1.51,-5 1|0:1:-3.01,-0,-5 0|1:1:-5,-0.19,-0.45 0|0:0:-0,-2.38,-5 0|0:0:-0.01,-1.77,-5 22 50336132 rs35381409 TTGAG T 928 PASS AVGPOST=0.9945;ERATE=0.0014;AN=2184;VT=INDEL;THETA=0.0011;AC=147;RSQ=0.9666;LDAF=0.0691;AF=0.07;ASN_AF=0.05;AMR_AF=0.02;AFR_AF=0.22;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-1.5,-29.5 0|0:0:0,-0.6,-15.2 0|0:0:0,-0.9,-22.8 0|0:0:0,-3,-74.8 0|0:0:0,-1.5,-30.2 22 50336156 rs182175046 A G 100 PASS ERATE=0.0005;AN=2184;RSQ=0.5826;VT=SNP;THETA=0.0018;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.63,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.22,-5 22 50336157 rs186779189 C T 100 PASS AA=C;AN=2184;ERATE=0.0009;VT=SNP;THETA=0.0027;AVGPOST=0.9976;LDAF=0.0019;RSQ=0.4632;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.14,-5 22 50336208 rs62234033 T C 100 PASS THETA=0.0009;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9358;AA=A;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0,-2.22,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.03,-5 22 50336232 . ATGAG A 790 PASS LDAF=0.012;AN=2184;AVGPOST=0.9975;VT=INDEL;THETA=0.0005;ERATE=0.0008;RSQ=0.9208;AC=25;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-1.2,-29.2 0|0:0:0,-1.2,-24.7 0|0:0:0,-0.6,-13.6 0|0:0:0,-3.9,-97.3 0|0:0:0,-1.2,-30 22 50336305 rs116207172 C T 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=c;RSQ=0.9286;AVGPOST=0.998;LDAF=0.0099;SNPSOURCE=LOWCOV;AC=21;THETA=0.0016;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.07,-0.85,-5 22 50336374 rs192412194 G A 100 PASS ERATE=0.0004;THETA=0.0014;AA=G;AN=2184;RSQ=0.8345;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.02,-1.36,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.09,-5 22 50336462 rs71810320 GAATA G 836 PASS RSQ=0.935;AN=2184;VT=INDEL;AVGPOST=0.9854;AC=194;LDAF=0.0873;THETA=0.0017;ERATE=0.0007;AF=0.09;ASN_AF=0.06;AMR_AF=0.1;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:0,-0.9,-19.9 1|0:0.85:0,-0.3,-3.3 0|0:0.45:0,-0.9,-16.2 0|0:0:0,-4.2,-104.1 0|0:0:0,-0.3,-7.8 22 50336472 rs71746120 ATGAG A 813 PASS AN=2184;VT=INDEL;RSQ=0.9088;AVGPOST=0.9791;THETA=0.0028;LDAF=0.0868;AC=189;ERATE=0.0012;AF=0.09;ASN_AF=0.06;AMR_AF=0.1;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-0.6,-15.5 1|0:0.85:0,-0.3,-7.7 0|0:0.45:0,-0.6,-10.5 0|0:0:0,-3.6,-85.9 0|0:0:0,-0.9,-16.3 22 50336568 . G GT 28 PASS THETA=0.0083;AN=2184;VT=INDEL;RSQ=0.6089;AVGPOST=0.9704;LDAF=0.0294;AC=43;ERATE=0.0018;AF=0.02;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-1.2,-16.8 0|0:0.1:0,-0.6,-8.4 0|1:0.55:0,-0.3,-4.2 0|0:0.2:0,-1.2,-15.3 0|0:0:0,-0.9,-12.6 22 50336581 rs140833953 T C 100 PASS ERATE=0.0005;RSQ=0.8795;AA=T;AN=2184;VT=SNP;AVGPOST=0.9969;LDAF=0.0101;SNPSOURCE=LOWCOV;THETA=0.0007;AC=19;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.06,-0.91,-4.7 0|0:0.05:-0.04,-1.08,-5 0|0:0:-0.06,-0.87,-5 22 50336582 rs185613146 G C 100 PASS ERATE=0.0004;RSQ=0.8995;AA=G;AN=2184;VT=SNP;LDAF=0.0026;AC=5;SNPSOURCE=LOWCOV;THETA=0.0013;AVGPOST=0.9995;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.04,-1.07,-5 0|0:0:-0.06,-0.87,-5 22 50336609 rs62234038 T C 100 PASS AC=187;ERATE=0.0004;RSQ=0.9589;AA=C;AN=2184;VT=SNP;LDAF=0.0873;AVGPOST=0.9913;THETA=0.0017;SNPSOURCE=LOWCOV;AF=0.09;ASN_AF=0.03;AMR_AF=0.11;AFR_AF=0.02;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.05,-0.95,-5 1|0:1:-5,-0,-3.47 0|1:1:-1.58,-0.01,-2.8 0|0:0:-0.03,-1.21,-5 0|0:0:-0.11,-0.66,-4.7 22 50336678 rs143258541 T C 100 PASS ERATE=0.0004;RSQ=0.8897;AA=T;AN=2184;LDAF=0.0105;AC=20;VT=SNP;THETA=0.0037;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.12,-0.62,-3.18 0|0:0:-0.18,-0.48,-2.17 0|0:0:-0.06,-0.86,-5 22 50336710 rs73891186 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;RSQ=0.9287;THETA=0.0082;VT=SNP;AC=33;AVGPOST=0.9964;LDAF=0.0166;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.11,-0.65,-4 0|0:0:-0.18,-0.46,-3 22 50336761 rs73181183 G A 100 PASS ERATE=0.0013;RSQ=0.7383;AA=G;AN=2184;VT=SNP;AC=56;THETA=0.0019;SNPSOURCE=LOWCOV;AVGPOST=0.9803;LDAF=0.0327;AF=0.03;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.0041;EUR_AF=0.05 GT:DS:GL 0|1:0.55:-0.85,-0.07,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.41,-0.45,-0.59 0|0:0.1:-0.12,-0.62,-4.1 0|0:0.2:-0.18,-0.47,-3.09 22 50336818 rs145537167 C T 100 PASS AA=C;THETA=0.0044;LDAF=0.0092;AN=2184;RSQ=0.7554;AVGPOST=0.9947;VT=SNP;AC=15;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.12,-0.62,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.21,-0.43,-2.43 22 50336879 rs73445912 T C 100 PASS AA=T;AN=2184;AC=159;THETA=0.0008;VT=SNP;LDAF=0.0853;ERATE=0.0048;RSQ=0.7656;SNPSOURCE=LOWCOV;AVGPOST=0.9507;AF=0.07;ASN_AF=0.03;AMR_AF=0.06;AFR_AF=0.19;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0.05:-0.23,-0.45,-1.24 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.8,-5 0|0:0:-0.1,-0.71,-5 22 50336984 rs148851336 G A 100 PASS ERATE=0.0013;THETA=0.0014;RSQ=0.4552;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0081;AVGPOST=0.9885;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.64,-4.7 0|0:0:-0.23,-0.45,-1.23 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.19,-0.46,-2.35 0|0:0.05:-0.48,-0.48,-0.48 22 50337015 rs143527493 G A 100 PASS AC=7;ERATE=0.0004;RSQ=0.7537;AVGPOST=0.9977;AA=G;AN=2184;LDAF=0.004;VT=SNP;THETA=0.0019;SNPSOURCE=LOWCOV;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.12,-0.6,-3.8 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.19,-0.45,-2.15 22 50337021 rs76580151 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;RSQ=0.9674;VT=SNP;THETA=0.0027;LDAF=0.0967;SNPSOURCE=LOWCOV;AVGPOST=0.9931;AC=211;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.04,-1.02,-5 1|0:1:-2.06,-0.01,-2.33 0|1:1:-0.19,-0.45,-2.18 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.11,-0.64,-4 22 50337077 rs79187286 G T 100 PASS AVGPOST=0.9957;LDAF=0.0088;AA=G;AN=2184;RSQ=0.8206;AC=16;VT=SNP;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;ASN_AF=0.0017;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.57,-5 22 50337306 rs190075545 G A 100 PASS RSQ=0.4988;AA=G;AN=2184;LDAF=0.009;VT=SNP;AC=10;ERATE=0.0017;SNPSOURCE=LOWCOV;THETA=0.0064;AVGPOST=0.9892;AF=0.0046;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.71,-5 0|0:0:-0.48,-0.48,-0.48 22 50337420 rs192909157 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0014;LDAF=0.0078;AN=2184;AC=16;VT=SNP;RSQ=0.9339;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.17,-0.5,-2.82 0|0:0:-0.48,-0.48,-0.48 22 50337432 rs112561154 C T 100 PASS AA=C;AN=2184;LDAF=0.0216;AVGPOST=0.9917;VT=SNP;THETA=0.0018;RSQ=0.8499;SNPSOURCE=LOWCOV;ERATE=0.0007;AC=42;AF=0.02;AFR_AF=0.06;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.23,-0.45,-1.23 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0.17,-0.49,-2.72 0|0:0:-0.48,-0.48,-0.48 22 50337517 rs150987285 C T 100 PASS AA=C;AN=2184;AC=6;VT=SNP;AVGPOST=0.9993;LDAF=0.0028;RSQ=0.8881;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0,-2.28,-5 22 50337535 rs185472135 C A 100 PASS AA=C;AN=2184;THETA=0.0031;AVGPOST=0.9979;VT=SNP;LDAF=0.0023;RSQ=0.5611;SNPSOURCE=LOWCOV;AC=3;ERATE=0.0007;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.02,-1.25,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0,-2.32,-5 22 50337647 rs189522864 C T 100 PASS AC=7;ERATE=0.0004;LDAF=0.0036;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8954;THETA=0.002;AVGPOST=0.9992;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.01,-1.9,-5 22 50337840 rs116523211 C T 100 PASS ERATE=0.0004;LDAF=0.0123;AA=C;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.8631;SNPSOURCE=LOWCOV;AC=25;AVGPOST=0.9951;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.02,-1.4,-5 22 50337843 rs73891187 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AC=27;LDAF=0.0128;THETA=0.0036;RSQ=0.9291;AF=0.01;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.07,-0.84,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.01,-1.85,-5 22 50337864 rs142241681 G A 100 PASS 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THETA=0.0048;RSQ=0.5943;AA=C;LDAF=0.0047;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.995;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.22,-0.46,-1.33 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.02,-1.38,-5 22 50338497 rs62234039 A G 100 PASS AN=2184;RSQ=0.9781;LDAF=0.1014;VT=SNP;AA=A;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9951;AC=222;AF=0.1;ASN_AF=0.08;AMR_AF=0.12;AFR_AF=0.02;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 1|0:1:-1.46,-0.02,-4.1 0|1:0.95:-0.12,-0.62,-3.18 0|0:0:-0.19,-0.46,-2.39 0|0:0:-0.06,-0.86,-5 22 50338562 rs150940149 C T 100 PASS THETA=0.0009;AA=T;AN=2184;RSQ=0.8999;AVGPOST=0.9766;VT=SNP;AC=215;ERATE=0.001;LDAF=0.0963;SNPSOURCE=LOWCOV;AF=0.1;ASN_AF=0.06;AMR_AF=0.12;AFR_AF=0.04;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 1|0:0.75:-0.12,-0.61,-3.14 0|0:0.25:-0.13,-0.58,-3.55 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.13,-0.59,-3.55 22 50338579 rs148920752 G A 100 PASS RSQ=0.7538;AN=2184;LDAF=0.086;AVGPOST=0.9473;VT=SNP;AA=A;ERATE=0.0059;SNPSOURCE=LOWCOV;AC=170;THETA=0.0051;AF=0.08;ASN_AF=0.06;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.13 GT:DS:GL 0|0:0.1:-0.48,-0.48,-0.48 0|0:0.45:-0.2,-0.44,-2 0|0:0.2:-0.09,-0.73,-4.7 0|0:0:-0.1,-0.67,-3.92 0|0:0:-0.14,-0.55,-3.22 22 50338589 rs143055323 A G 100 PASS AN=2184;AC=107;AVGPOST=0.9967;VT=SNP;LDAF=0.0488;AA=A;SNPSOURCE=LOWCOV;THETA=0.0029;ERATE=0.0003;RSQ=0.9735;AF=0.05;AMR_AF=0.02;AFR_AF=0.15;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.16,-0.52,-2.63 0|0:0:-0.04,-1.08,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.22,-0.43,-1.78 22 50338589 . A AG 122 PASS ERATE=0.0014;LDAF=0.038;AN=2184;VT=INDEL;AC=70;THETA=0.0066;AVGPOST=0.9697;RSQ=0.6976;AF=0.03;ASN_AF=0.02;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:0,0,0 0|0:0.25:0,-0.3,-3.9 0|0:0.1:0,-0.6,-7.8 0|0:0:0,-0.6,-7.8 0|0:0:0,0,0 22 50338592 rs28674877 A C 100 PASS AC=591;AN=2184;LDAF=0.273;THETA=0.0008;VT=SNP;ERATE=0.001;RSQ=0.9321;AA=-;SNPSOURCE=LOWCOV;AVGPOST=0.9547;AF=0.27;ASN_AF=0.17;AMR_AF=0.16;AFR_AF=0.67;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 1|0:0.6:-0.14,-0.55,-2.79 0|0:0.05:-0.05,-0.93,-5 1|0:1:-0.1,-0.69,-4.1 0|0:0:-0.22,-0.43,-1.78 22 50338610 rs188363356 G T 100 PASS RSQ=0.2708;LDAF=0.0035;AA=G;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;AC=2;AVGPOST=0.994;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.27,-0.43,-1 0|0:0:-0.07,-0.83,-4.7 0|0:0:-0.1,-0.67,-4 0|0:0:-0.48,-0.48,-0.48 22 50338639 . TC T 268 PASS AC=205;AN=2184;VT=INDEL;RSQ=0.8462;AVGPOST=0.9674;ERATE=0.0018;THETA=0.0029;LDAF=0.0951;AF=0.09;ASN_AF=0.07;AMR_AF=0.11;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:0,0,0 1|0:1:0,0,0 0|1:0.75:0,0,0 0|0:0.05:0,-0.6,-8.2 0|0:0:0,0,0 22 50338686 . TC T 128 PASS AN=2184;VT=INDEL;AC=200;ERATE=0.0011;AVGPOST=0.9771;LDAF=0.0899;THETA=0.0007;RSQ=0.8867;AF=0.09;ASN_AF=0.08;AMR_AF=0.11;AFR_AF=0.02;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-0.9,-12.3 1|0:1.05:0,0,0 0|1:0.75:0,0,0 0|0:0:0,0,0 0|0:0.05:0,0,0 22 50338703 rs150404203 C T 100 PASS THETA=0.0015;AA=C;AC=122;AN=2184;VT=SNP;AVGPOST=0.9918;SNPSOURCE=LOWCOV;LDAF=0.058;ERATE=0.0007;RSQ=0.9415;AF=0.06;ASN_AF=0.06;AMR_AF=0.06;AFR_AF=0.06;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.11,-0.64,-3.8 0|0:0.05:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.55,-3.18 22 50338713 rs28708719 C T 100 PASS AVGPOST=0.9963;AA=C;LDAF=0.0371;RSQ=0.9608;AN=2184;THETA=0.0031;VT=SNP;AC=79;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.04;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.09;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.08,-0.78,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.13,-0.57,-3.42 22 50338781 . TC T 51 PASS AC=160;THETA=0.0009;AVGPOST=0.9551;LDAF=0.0782;AN=2184;VT=INDEL;ERATE=0.0033;RSQ=0.765;AF=0.07;ASN_AF=0.05;AMR_AF=0.08;AFR_AF=0.02;EUR_AF=0.12 GT:DS:GL 0|0:0:0,-2.4,-31.7 1|0:0.75:0,0,0 0|0:0.15:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50338824 rs28371002 C T 100 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9963;RSQ=0.9613;AA=C;LDAF=0.0371;AN=2184;VT=SNP;AC=79;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.09;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.22,-0.42,-1.81 0|0:0:-0.21,-0.43,-1.92 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.56,-3.3 22 50338845 rs144323540 C T 100 PASS AA=C;AN=2184;AC=13;VT=SNP;RSQ=0.7862;LDAF=0.0072;THETA=0.0037;SNPSOURCE=LOWCOV;AVGPOST=0.9958;ERATE=0.0007;AF=0.01;ASN_AF=0.0035;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.46,-2.06 0|0:0:-0.03,-1.19,-5 22 50338911 rs112799761 C A 100 PASS ERATE=0.0021;AA=C;AN=2184;AVGPOST=0.9613;VT=SNP;RSQ=0.788;SNPSOURCE=LOWCOV;THETA=0.0013;AC=164;LDAF=0.0766;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.02;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.13,-0.6,-3.8 1|0:0.75:-0.48,-0.48,-0.48 0|0:0.25:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-3.92 0|0:0:-0.48,-0.48,-0.48 22 50338999 rs144036124 C A 100 PASS AA=C;THETA=0.0044;AN=2184;VT=SNP;ERATE=0.0011;AC=177;SNPSOURCE=LOWCOV;RSQ=0.8959;AVGPOST=0.9801;LDAF=0.0814;AF=0.08;ASN_AF=0.07;AMR_AF=0.11;AFR_AF=0.02;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.14,-0.55,-3.28 1|0:1:-2.25,-0.44,-0.2 0|0:0.05:-0.15,-0.54,-2.51 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.23,-0.42,-1.64 22 50339007 rs144601463 C G 100 PASS AN=2184;LDAF=0.1005;VT=SNP;AA=c;THETA=0.0017;SNPSOURCE=LOWCOV;RSQ=0.971;ERATE=0.0006;AC=218;AVGPOST=0.9932;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.02;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.28,-0.39,-1.16 1|0:1:-0.19,-0.45,-2.17 0|1:0.95:-0.07,-0.85,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.42,-1.71 22 50339008 rs138248257 C T 100 PASS 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AC=47;AVGPOST=0.9896;LDAF=0.0237;AN=2184;THETA=0.0031;VT=SNP;RSQ=0.8289;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0.05:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 22 50345509 rs73445937 G A 100 PASS RSQ=0.8895;AVGPOST=0.9888;LDAF=0.0403;AA=G;AN=2184;AC=83;VT=SNP;THETA=0.0067;ERATE=0.0008;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.07;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.19,-0.46,-2.74 0|0:0:-0.12,-0.63,-3.28 0|0:0:-0.04,-1.06,-5 0|0:0:-0.2,-0.46,-1.96 0|0:0:-0.12,-0.62,-5 22 50345545 rs79543706 G A 100 PASS AA=g;AN=2184;VT=SNP;AC=68;RSQ=0.8901;ERATE=0.0011;SNPSOURCE=LOWCOV;THETA=0.0051;AVGPOST=0.9906;LDAF=0.0345;AF=0.03;AMR_AF=0.02;AFR_AF=0.12;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.04,-1.03,-5 0|0:0:-0.12,-0.63,-3.27 0|0:0:-0.11,-0.64,-3.24 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.1,-0.67,-5 22 50345556 rs62231870 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9561;AVGPOST=0.9901;VT=SNP;THETA=0.0019;SNPSOURCE=LOWCOV;AC=202;LDAF=0.0944;AF=0.09;ASN_AF=0.05;AMR_AF=0.12;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.04,-1.02,-5 1|0:1:-2.15,-0.02,-1.34 0|1:1:-1.59,-0.01,-2.14 0|0:0:-0.12,-0.62,-3.85 0|0:0:-0.07,-0.85,-5 22 50345598 rs114961787 C T 100 PASS ERATE=0.0005;RSQ=0.7706;AA=C;AN=2184;AC=6;VT=SNP;LDAF=0.0034;THETA=0.0019;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.54,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.01,-1.58,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.05,-1,-5 22 50345708 rs187396396 T A 100 PASS ERATE=0.0005;RSQ=0.5015;AA=T;AN=2184;AVGPOST=0.9979;LDAF=0.0018;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.06,-0.9,-5 22 50345729 rs28479081 T C 100 PASS RSQ=0.9479;AA=C;AN=2184;AC=1103;ERATE=0.0024;VT=SNP;THETA=0.0017;AVGPOST=0.9602;SNPSOURCE=LOWCOV;LDAF=0.505;AF=0.51;ASN_AF=0.54;AMR_AF=0.41;AFR_AF=0.83;EUR_AF=0.32 GT:DS:GL 0|0:0:-0.02,-1.4,-5 1|0:1:-4.7,-0.03,-1.14 0|1:1.4:-5,-0.99,-0.05 0|1:1:-4.4,-0,-4 1|0:1:-4.7,-0,-3.7 22 50345863 rs151022007 C T 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=C;THETA=0.0032;AN=2184;VT=SNP;RSQ=0.5313;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0012;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.16,-0.51,-2.89 0|0:0:-0.01,-1.48,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.48,-0.48,-0.48 22 50345868 rs77618678 G C 100 PASS THETA=0.0014;LDAF=0.1066;AA=G;AN=2184;RSQ=0.8919;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9722;ERATE=0.0006;AC=222;AF=0.1;ASN_AF=0.23;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.01,-1.49,-5 0|0:0.05:-0.12,-0.63,-4 0|1:1:-1.56,-0.01,-5 1|0:0.95:-0.48,-0.48,-0.48 22 50345932 rs192202023 C T 100 PASS ERATE=0.0004;AN=2184;RSQ=0.6434;AVGPOST=0.9981;VT=SNP;THETA=0.0027;AA=c;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.0035;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.24,-0.45,-1.2 0|0:0:-0.08,-0.79,-4 0|0:0:-0.15,-0.53,-3.18 0|0:0:-0.48,-0.48,-0.48 22 50346042 rs56091001 C T 100 PASS LDAF=0.0931;AA=C;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.9419;AC=201;AVGPOST=0.9872;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.09;ASN_AF=0.05;AMR_AF=0.12;AFR_AF=0.01;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.08,-0.78,-5 1|0:1:-0.21,-0.46,-1.35 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.16,-5 0|0:0:-0.48,-0.48,-0.48 22 50346043 rs77808384 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.011;VT=SNP;THETA=0.0081;SNPSOURCE=LOWCOV;AC=21;RSQ=0.8465;AVGPOST=0.9951;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.08,-0.8,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.14,-5 0|0:0:-0.48,-0.48,-0.48 22 50346053 . CG C 186 PASS THETA=0.0035;AN=2184;RSQ=0.839;ERATE=0.0025;VT=INDEL;LDAF=0.1656;AVGPOST=0.9361;AC=336;AF=0.15;ASN_AF=0.17;AMR_AF=0.1;AFR_AF=0.35;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-1.2,-16.8 0|0:0.1:0,0,0 0|0:0.3:0,0,0 0|0:0:0,-0.3,-4.2 0|0:0.15:0,0,0 22 50346070 rs79187414 G A 100 PASS ERATE=0.0004;THETA=0.0014;LDAF=0.0035;AA=G;AN=2184;VT=SNP;RSQ=0.6452;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9968;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.69,-5 0|0:0:-0.2,-0.44,-1.98 22 50346072 rs113924912 C T 100 PASS LDAF=0.1218;THETA=0.0015;AA=C;AN=2184;RSQ=0.8041;VT=SNP;AC=227;AVGPOST=0.9399;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.1;AMR_AF=0.17;AFR_AF=0.02;EUR_AF=0.21 GT:DS:GL 1|0:1.05:-4.7,-0,-2.47 0|0:0.2:-0.21,-0.46,-1.36 0|0:0.45:-0.48,-0.48,-0.48 1|0:1:-5,-0,-4.7 0|0:0.1:-0.2,-0.44,-1.98 22 50346230 rs183989438 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0148;RSQ=0.9203;VT=SNP;AC=31;THETA=0.0033;AVGPOST=0.997;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-3.42,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-3.14,-5 22 50346279 . GAACA G 54 PASS LDAF=0.0088;AN=2184;VT=INDEL;THETA=0.0005;ERATE=0.0024;AC=10;AVGPOST=0.9905;RSQ=0.548;AF=0.0046;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.3,-8.7 0|0:0:0,-1.2,-32.1 0|0:0:0,-0.9,-24.9 0|0:0.15:0,-0.3,-8.7 0|0:0:0,-0.3,-8.7 22 50346291 . G GT 94 PASS RSQ=0.7587;AN=2184;VT=INDEL;THETA=0.0011;AC=24;LDAF=0.0147;ERATE=0.0007;AVGPOST=0.991;AF=0.01;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.3,-4.2 0|0:0:0,-0.9,-12.4 0|0:0:0,-0.9,-12 0|0:0.45:0,-0.3,-4.2 0|0:0:0,-0.3,-4.2 22 50346304 rs146790808 G A 100 PASS AVGPOST=0.9985;AA=g;AN=2184;VT=SNP;RSQ=0.7648;LDAF=0.0028;AC=5;SNPSOURCE=LOWCOV;THETA=0.0073;ERATE=0.0007;AF=0.0023;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.11,-0.64,-4.7 22 50346305 rs140585154 T C 100 PASS ERATE=0.0004;RSQ=0.8579;AC=48;AN=2184;AVGPOST=0.9917;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0107;AA=t;LDAF=0.0243;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.38,-5 1|0:1:-4.1,-0,-3.7 0|0:0:-0.11,-0.65,-4.7 22 50346312 rs112350508 T A 100 PASS AA=T;AN=2184;VT=SNP;AC=200;THETA=0.0011;LDAF=0.0956;SNPSOURCE=LOWCOV;ERATE=0.0028;RSQ=0.908;AVGPOST=0.9787;AF=0.09;ASN_AF=0.19;AMR_AF=0.05;AFR_AF=0.12;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.91,-5 1|0:0.75:-2.74,-0,-5 0|0:0:-0.04,-1.11,-5 0|0:0.05:-0.18,-0.47,-3.06 22 50346318 . C CCA 455 PASS AN=2184;THETA=0.0038;RSQ=0.9206;VT=INDEL;LDAF=0.0915;AC=195;ERATE=0.0006;AVGPOST=0.9824;AF=0.09;ASN_AF=0.18;AMR_AF=0.05;AFR_AF=0.12;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.9,-14.7 0|0:0:0,-0.3,-4.9 0|0:0.25:0,-0.6,-9.8 0|0:0:0,0,0 0|0:0:0,0,0 22 50346346 rs187175617 C T 100 PASS AVGPOST=0.9977;RSQ=0.4267;AN=2184;LDAF=0.0018;VT=SNP;AA=c;THETA=0.0006;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0.05:-0.15,-0.54,-1.92 0|0:0:-0.04,-1.06,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.1,-0.67,-5 22 50346410 rs192998017 T C 100 PASS THETA=0.0088;ERATE=0.0005;AN=2184;LDAF=0.001;VT=SNP;AA=c;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4511;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.04,-1.1,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.19,-0.46,-2.21 0|0:0:-0,-2.91,-5 0|0:0:-0.09,-0.74,-5 22 50346413 rs184262837 G A 100 PASS THETA=0.0009;ERATE=0.0005;AA=g;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.5025;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.13,-0.6,-3.74 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.87,-5 0|0:0:-0.15,-0.54,-4.1 22 50346648 rs72619587 C T 100 PASS ERATE=0.0005;AA=C;LDAF=0.0866;AN=2184;THETA=0.0031;AC=181;VT=SNP;AVGPOST=0.982;SNPSOURCE=LOWCOV;RSQ=0.9103;AF=0.08;ASN_AF=0.09;AMR_AF=0.11;AFR_AF=0.12;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0.05:-0.22,-0.46,-1.25 0|0:0:-0.03,-1.13,-5 0|0:0.1:-0.07,-0.84,-5 22 50346712 rs4076031 C T 100 PASS AVGPOST=0.9738;AA=C;RSQ=0.9245;AN=2184;AC=305;VT=SNP;ERATE=0.001;LDAF=0.1419;SNPSOURCE=LOWCOV;THETA=0.0043;AF=0.14;ASN_AF=0.2;AMR_AF=0.07;AFR_AF=0.32;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.1:-0.13,-0.6,-2.15 0|0:0:-0.05,-0.95,-5 0|0:0:-0.16,-0.5,-3.59 22 50346797 rs145721377 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0032;RSQ=0.3732;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.12,-0.62,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-1.97,-5 0|0:0:-0.19,-0.46,-2.95 22 50346936 rs138402217 C T 100 PASS ERATE=0.0004;RSQ=0.8292;AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0017;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.08,-0.79,-4 0|0:0:-0.02,-1.37,-5 0|0:0:-0.07,-0.85,-5 22 50346958 rs149202138 G A 100 PASS AVGPOST=0.9957;AA=G;AN=2184;LDAF=0.0032;VT=SNP;ERATE=0.001;RSQ=0.4458;THETA=0.0025;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.0035;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.02,-1.42,-5 0|0:0:-0.1,-0.7,-5 22 50346968 rs77282399 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=g;AN=2184;VT=SNP;RSQ=0.4487;SNPSOURCE=LOWCOV;AC=1;THETA=0.0051;LDAF=0.0012;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.05,-1,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.1,-0.7,-5 22 50347045 rs28523622 G A 100 PASS AA=G;AN=2184;AC=480;VT=SNP;LDAF=0.2257;AVGPOST=0.9441;ERATE=0.0018;SNPSOURCE=LOWCOV;RSQ=0.8796;THETA=0.0024;AF=0.22;ASN_AF=0.27;AMR_AF=0.2;AFR_AF=0.27;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0.05:-0.07,-0.83,-4.4 0|0:0.1:-0.13,-0.61,-2.22 0|1:0.95:-0.1,-0.7,-4.7 1|0:1:-2.44,-0,-2.28 22 50347066 rs189570916 G A 100 PASS ERATE=0.0005;AVGPOST=0.9986;THETA=0.0039;AA=G;AN=2184;VT=SNP;RSQ=0.4808;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.04,-1.02,-5 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.11,-0.66,-4.7 22 50347153 rs143343891 C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;THETA=0.0082;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6313;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.1,-0.69,-4.4 0|0:0:-0.03,-1.15,-5 22 50347162 rs181990836 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;RSQ=0.4853;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;THETA=0.0034;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.08,-0.77,-5 0|0:0:-0.02,-1.25,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.03,-1.14,-5 22 50347270 rs112599197 A T 100 PASS THETA=0.0026;LDAF=0.0288;AN=2184;AC=55;VT=SNP;AA=A;RSQ=0.8299;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9876;AF=0.03;ASN_AF=0.03;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.52,-5 0|1:1.05:-2.79,-0.5,-0.17 0|0:0:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 22 50347548 rs116591793 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;THETA=0.0094;AVGPOST=0.997;LDAF=0.0063;SNPSOURCE=LOWCOV;AC=11;RSQ=0.7919;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0.05:-0.12,-0.62,-2.42 0|0:0:-0.18,-0.47,-2.3 0|0:0:-0.04,-1.1,-5 0|0:0:-0.16,-0.5,-3.59 22 50347549 rs114327817 C T 100 PASS THETA=0.0088;AVGPOST=0.9957;AA=C;LDAF=0.0035;RSQ=0.4842;AN=2184;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.1,-0.69,-3.52 0|0:0:-0.03,-1.16,-5 0|0:0:-0.16,-0.5,-3.59 22 50347615 rs147132859 G A 100 PASS RSQ=0.6897;AA=G;AN=2184;AVGPOST=0.9947;VT=SNP;THETA=0.0018;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=11;LDAF=0.0073;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0.28,-0.43,-0.97 0|0:0:-0.11,-0.64,-3.22 0|0:0:-0.06,-0.89,-5 0|0:0:-0.07,-0.84,-5 22 50347757 rs57124337 G A 100 PASS ERATE=0.0005;THETA=0.0023;AVGPOST=0.9977;AA=G;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;RSQ=0.5219;AF=0.0014;ASN_AF=0.0017;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.09,-0.74,-5 0|0:0:-0.06,-0.89,-5 22 50347850 rs28634968 G A 100 PASS RSQ=0.8703;AC=450;AA=G;AN=2184;VT=SNP;LDAF=0.2197;ERATE=0.0045;THETA=0.0025;AVGPOST=0.9367;SNPSOURCE=LOWCOV;AF=0.21;ASN_AF=0.21;AMR_AF=0.22;AFR_AF=0.29;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.06,-0.9,-5 1|0:1:-2.29,-0.02,-1.4 0|0:0.45:-0.4,-0.45,-0.6 0|0:0:-0.06,-0.9,-5 0|0:0:-0.18,-0.46,-3.01 22 50347881 rs184763625 G A 100 PASS AC=12;AVGPOST=0.9904;ERATE=0.0014;THETA=0.0074;AA=G;AN=2184;LDAF=0.0093;RSQ=0.5832;VT=SNP;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.24,-0.41,-1.54 0|0:0:-0.07,-0.8,-4.7 0|0:0:-0.07,-0.81,-4.1 0|0:0.15:-0.11,-0.66,-4.7 0|0:0:-0.19,-0.46,-2.98 22 50347915 rs142744986 G C 100 PASS THETA=0.0093;ERATE=0.0005;LDAF=0.0035;AA=G;AN=2184;AC=6;VT=SNP;AVGPOST=0.998;RSQ=0.7639;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.17,-0.5,-2.48 0|0:0:-0.02,-1.36,-5 22 50347927 rs28360566 G C 100 PASS 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ERATE=0.0004;THETA=0.0022;AA=T;AN=2184;VT=SNP;LDAF=0.0452;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=98;RSQ=0.9763;AF=0.04;AMR_AF=0.02;AFR_AF=0.19 GT:DS:GL 0|0:0:-0.04,-1.02,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.06,-0.91,-5 22 50348456 rs181545209 A C 100 PASS THETA=0.0021;RSQ=0.4551;LDAF=0.0035;AN=2184;VT=SNP;AA=A;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.06,-0.89,-5 22 50348584 rs117740434 C A 100 PASS THETA=0.0021;AA=C;AN=2184;ERATE=0.0009;VT=SNP;AC=10;AVGPOST=0.993;SNPSOURCE=LOWCOV;RSQ=0.6481;LDAF=0.008;AF=0.0046;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.03,-1.24,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.48,-0.48,-0.48 22 50348649 rs73891195 G A 100 PASS AA=G;AN=2184;RSQ=0.8487;VT=SNP;AVGPOST=0.9908;AC=41;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0213;AF=0.02;AFR_AF=0.08 GT:DS:GL 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CG C 269 PASS THETA=0.0015;AN=2184;VT=INDEL;AC=38;ERATE=0.0008;RSQ=0.8635;AVGPOST=0.9929;LDAF=0.0198;AF=0.02;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-1.5,-22.5 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50349392 rs190034919 A C 100 PASS ERATE=0.0005;THETA=0.0026;AN=2184;RSQ=0.4529;VT=SNP;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.14,-0.57,-5 0|0:0:-0.48,-0.48,-0.48 22 50349453 rs75842190 G A 100 PASS AA=G;AN=2184;THETA=0.0082;VT=SNP;AC=155;LDAF=0.074;SNPSOURCE=LOWCOV;RSQ=0.9191;ERATE=0.0003;AVGPOST=0.9851;AF=0.07;ASN_AF=0.12;AMR_AF=0.04;AFR_AF=0.03;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-3.24,-5 0|0:0:-0.22,-0.46,-1.34 0|0:0:-0.22,-0.46,-1.27 0|1:1:-1.95,-0.01,-3.4 1|0:1:-3.21,-0.49,-0.17 22 50349601 rs77748532 T C 100 PASS 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AVGPOST=0.9936;THETA=0.0015;RSQ=0.7013;LDAF=0.0092;AN=2184;VT=SNP;AA=c;ERATE=0.0011;AC=15;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.02;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.47,-2.44 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.16,-0.5,-2.53 0|0:0:-0.19,-0.45,-2.11 22 50353917 rs28465520 C G 100 PASS AVGPOST=0.9564;AA=g;RSQ=0.8955;LDAF=0.8007;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;AC=1754;AF=0.8;ASN_AF=0.78;AMR_AF=0.82;AFR_AF=0.81;EUR_AF=0.81 GT:DS:GL 1|1:2:-3.06,-0.46,-0.18 0|1:1.15:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 1|1:2:-5,-0.68,-0.1 1|1:2:-0.48,-0.48,-0.48 22 50353919 rs56150947 G A 100 PASS AA=g;AN=2184;RSQ=0.8919;LDAF=0.3989;VT=SNP;AC=866;SNPSOURCE=LOWCOV;THETA=0.0013;AVGPOST=0.9336;ERATE=0.0037;AF=0.4;ASN_AF=0.41;AMR_AF=0.48;AFR_AF=0.22;EUR_AF=0.46 GT:DS:GL 0|1:1:-0.18,-0.48,-2.46 0|1:1:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 1|1:2:-5,-0.67,-0.1 1|0:1:-0.48,-0.48,-0.48 22 50353977 rs180876551 T C 100 PASS ERATE=0.0013;AN=2184;LDAF=0.0201;AC=26;AVGPOST=0.9785;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.002;RSQ=0.5748;AA=t;AF=0.01;ASN_AF=0.0017;AFR_AF=0.04;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.35,-0.41,-0.78 0|0:0:-0.22,-0.46,-1.31 0|0:0:-0.19,-0.46,-2.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50353980 rs139375983 T A 100 PASS AVGPOST=0.9848;AN=2184;LDAF=0.0208;VT=SNP;ERATE=0.0008;RSQ=0.7291;SNPSOURCE=LOWCOV;THETA=0.0007;AA=t;AC=39;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.46,-2.2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50354011 rs28424067 G A 100 PASS RSQ=0.878;THETA=0.0061;AA=g;AN=2184;VT=SNP;AC=626;ERATE=0.003;LDAF=0.3018;SNPSOURCE=LOWCOV;AVGPOST=0.934;AF=0.29;ASN_AF=0.35;AMR_AF=0.28;AFR_AF=0.23;EUR_AF=0.28 GT:DS:GL 1|0:1:-2.23,-0.01,-1.74 0|0:0.1:-0.22,-0.46,-1.34 0|0:0:-0.12,-0.63,-4 0|0:0.05:-0.48,-0.48,-0.48 0|1:1:-0.48,-0.48,-0.48 22 50354255 rs28375915 G A 100 PASS AA=g;AN=2184;ERATE=0.0034;VT=SNP;RSQ=0.8527;AVGPOST=0.9084;LDAF=0.4637;AC=1021;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.47;ASN_AF=0.42;AMR_AF=0.52;AFR_AF=0.48;EUR_AF=0.47 GT:DS:GL 0|1:1:-5,-0.65,-0.11 0|1:1.1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|1:2:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 22 50354272 rs111752560 A C 100 PASS LDAF=0.4795;AN=2184;AC=1057;VT=SNP;ERATE=0.0051;AA=c;SNPSOURCE=LOWCOV;RSQ=0.8082;THETA=0.0043;AVGPOST=0.8809;AF=0.48;ASN_AF=0.43;AMR_AF=0.54;AFR_AF=0.52;EUR_AF=0.48 GT:DS:GL 0|1:1.05:-4.7,-0.66,-0.11 0|1:1.05:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 1|1:1.9:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 22 50354416 rs185484423 G C 100 PASS AA=g;ERATE=0.0076;AN=2184;VT=SNP;AC=51;THETA=0.0122;SNPSOURCE=LOWCOV;RSQ=0.2654;AVGPOST=0.8605;LDAF=0.084;AF=0.02;ASN_AF=0.02;AMR_AF=0.05;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 0|0:0.3:-0.48,-0.48,-0.48 0|0:0.35:-0.48,-0.48,-0.48 0|0:0.35:-0.48,-0.48,-0.48 22 50354558 rs150609497 G T 100 PASS AVGPOST=0.9328;LDAF=0.0531;AA=g;THETA=0.0047;AN=2184;RSQ=0.4789;VT=SNP;AC=67;ERATE=0.0017;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.05 GT:DS:GL 0|0:0.1:-0.48,-0.48,-0.48 0|0:0.4:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.48,-0.48,-0.48 22 50354819 rs11541025 C A 100 PASS ERATE=0.0069;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0095;AA=c;AC=714;AVGPOST=0.9207;RSQ=0.8601;LDAF=0.3386;AF=0.33;ASN_AF=0.31;AMR_AF=0.3;AFR_AF=0.41;EUR_AF=0.3 GT:DS:GL 1|0:1:-3.49,-0.01,-1.62 1|0:0.75:-0.48,-0.48,-0.48 1|1:2:-5,-1.93,-0.01 0|0:0:-0.15,-0.53,-3.18 0|1:0.95:-0.18,-0.47,-3.08 22 50355407 . C T 100 PASS THETA=0.0021;AN=2184;RSQ=0.9203;LDAF=0.001;VT=SNP;AA=c;AVGPOST=0.9998;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-2.62,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3,-5 22 50355627 rs117609476 G A 100 PASS ERATE=0.0004;LDAF=0.0809;AA=g;RSQ=0.924;AN=2184;THETA=0.0085;AVGPOST=0.9846;VT=SNP;SNPSOURCE=LOWCOV;AC=173;AF=0.08;ASN_AF=0.08;AMR_AF=0.18;AFR_AF=0.02;EUR_AF=0.07 GT:DS:GL 0|0:0.05:-0.01,-1.48,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.38,-5 0|0:0:-0.04,-1.09,-5 22 50355686 rs190982104 C T 100 PASS ERATE=0.0005;RSQ=0.8395;AN=2184;AC=16;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.0081;THETA=0.0034;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.28,-0.44,-0.98 0|0:0:-0.05,-0.95,-5 0|0:0:-0.07,-0.85,-5 22 50355828 rs183504919 G A 100 PASS THETA=0.0009;AVGPOST=0.9843;AA=g;AN=2184;RSQ=0.3266;LDAF=0.009;VT=SNP;ERATE=0.0017;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.48,-0.48,-0.48 22 50356051 . TC T 92 PASS THETA=0.0048;RSQ=0.3397;AN=2184;VT=INDEL;ERATE=0.0032;LDAF=0.0539;AC=50;AVGPOST=0.914;AF=0.02;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 0|0:0.1:0,-0.3,-3.5 0|0:0.1:0,0,0 0|0:0:0,0,0 0|0:0.1:0,0,0 0|0:0.1:0,-0.3,-3.5 22 50356255 rs149796855 G A 100 PASS AA=g;AN=2184;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;THETA=0.002;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.19,-0.45,-2.16 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356274 rs28645887 C T 100 PASS ERATE=0.0005;AN=2184;RSQ=0.9944;THETA=0.0008;VT=SNP;LDAF=0.46;AA=c;SNPSOURCE=LOWCOV;AC=1004;AVGPOST=0.9968;AF=0.46;ASN_AF=0.42;AMR_AF=0.52;AFR_AF=0.43;EUR_AF=0.48 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-5,-0.01,-1.65 0|0:0:-0.07,-0.81,-4.1 1|1:2:-5,-5,0 1|0:1:-5,0,-5 22 50356293 . G C 100 PASS ERATE=0.0004;AA=g;AN=2184;RSQ=0.0497;AVGPOST=0.9997;VT=SNP;THETA=0.0011;LDAF=0.0001;SNPSOURCE=EXOME;AC=0;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.01,-1.59,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356302 rs28691713 C T 100 PASS ERATE=0.0004;AC=1058;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9957;AVGPOST=0.9975;THETA=0.0008;VT=SNP;AA=c;LDAF=0.4847;AF=0.48;ASN_AF=0.42;AMR_AF=0.52;AFR_AF=0.54;EUR_AF=0.47 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-5,-0.32,-0.28 0|0:0:-0,-2.15,-5 1|1:2:-5,-5,0 1|0:1:-5,0,-5 22 50356313 . G C 100 PASS AA=g;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=EXOME;AC=4;RSQ=0.9667;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.74,-5 0|0:0:-0,-2.56,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356368 . C T 100 PASS ERATE=0.0004;AVGPOST=1;LDAF=0.0009;RSQ=0.9768;AN=2184;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.52,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356386 rs144759588 C T 100 PASS AC=18;LDAF=0.0083;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9876;VT=SNP;AA=c;AVGPOST=0.9998;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356473 rs139983531 C T 100 PASS LDAF=0.0013;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9689;VT=SNP;AA=c;THETA=0.0006;ERATE=0.0003;AC=3;AVGPOST=0.9999;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356497 . G A 100 PASS ERATE=0.0004;AA=g;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9546;SNPSOURCE=EXOME;LDAF=0.0014;AC=3;AVGPOST=0.9999;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356503 . G A 100 PASS AA=g;RSQ=0.876;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.62,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356506 . C G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356529 rs145509761 A C 100 PASS AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.7664;SNPSOURCE=LOWCOV;AC=1;AA=a;THETA=0.002;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.71,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356555 rs4078443 T C 100 PASS ERATE=0.0005;AVGPOST=0.9963;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=c;THETA=0.0006;AC=1710;RSQ=0.9919;LDAF=0.7822;AF=0.78;ASN_AF=0.8;AMR_AF=0.81;AFR_AF=0.76;EUR_AF=0.77 GT:DS:GL 1|1:2:-5,-5,0 0|1:1:-1.9,-0.02,-1.57 0|0:0:-0.08,-0.78,-3.12 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50356658 . G A 100 PASS RSQ=0.0664;AA=g;AN=2184;AVGPOST=0.9997;THETA=0.0008;VT=SNP;LDAF=0.0001;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.76,-5 0|0:0:-0.11,-0.67,-2.54 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50356693 rs4077129 T C 100 PASS AC=1706;RSQ=0.9746;AVGPOST=0.9888;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.0043;THETA=0.0006;LDAF=0.7776;AA=t;AF=0.78;ASN_AF=0.8;AMR_AF=0.81;AFR_AF=0.77;EUR_AF=0.76 GT:DS:GL 1|1:2:-5,-2.69,-0 0|1:1:-0.75,-0.08,-4.7 0|0:0:-0.01,-1.48,-5 1|1:2:-5,-5,0 1|1:2:-5,-4.1,-0 22 50356731 . C T 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.9497;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;AA=c;LDAF=0.0029;SNPSOURCE=EXOME;AF=0.0027;AMR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.75,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.07,-0.85,-4.4 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.21,-5 22 50356811 . G T 100 PASS ERATE=0.0004;LDAF=0.0013;AA=g;AN=2184;VT=SNP;RSQ=0.7372;AVGPOST=0.9991;SNPSOURCE=EXOME;THETA=0.0007;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0,-2,-5 0|0:0:-0.01,-1.87,-5 0|0:0:-0,-2.22,-5 22 50356832 rs185984395 C T 100 PASS RSQ=0.6151;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;AA=c;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0,-2.24,-5 22 50356850 rs1801645 C T 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9975;AC=1688;VT=SNP;AA=c;THETA=0.0006;RSQ=0.994;LDAF=0.7722;SNPSOURCE=LOWCOV;AF=0.77;ASN_AF=0.78;AMR_AF=0.8;AFR_AF=0.76;EUR_AF=0.76 GT:DS:GL 1|1:2:-5,-2.18,-0 0|1:1:-5,-0.33,-0.27 0|0:0:-0,-2.3,-5 1|1:2:-5,-0.94,-0.05 1|1:2:-5,-2.65,-0 22 50356864 rs191945241 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;LDAF=0.0015;VT=SNP;THETA=0.0012;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=2;RSQ=0.7038;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.1,-0.69,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.02,-5 22 50356875 rs182810778 C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0021;AN=2184;RSQ=0.7201;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.0017;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.57,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.01,-1.75,-5 22 50356887 rs188247486 C T 100 PASS ERATE=0.0004;AN=2184;RSQ=0.8317;LDAF=0.0018;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AVGPOST=0.9992;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.59,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.94,-5 0|0:0:-0.01,-1.88,-5 0|0:0:-0.02,-1.46,-5 22 50356961 rs147722938 C T 100 PASS AC=17;ERATE=0.0004;LDAF=0.0092;AN=2184;THETA=0.0005;VT=SNP;AA=c;RSQ=0.8193;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.63,-4.22 0|0:0:-0.01,-1.62,-5 22 50356965 rs114320081 C T 100 PASS ERATE=0.0005;AN=2184;THETA=0.0005;RSQ=0.7595;VT=SNP;AA=c;AC=9;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.005;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.06,-0.87,-4.7 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-4.1 0|0:0:-0.01,-1.62,-5 22 50356994 rs192783206 G A 100 PASS ERATE=0.0004;AVGPOST=0.9977;AA=g;THETA=0.0022;AN=2184;VT=SNP;RSQ=0.6709;LDAF=0.003;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.05,-1,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.08,-0.77,-5 22 50357305 rs114867023 C T 100 PASS ERATE=0.0005;THETA=0.0004;AN=2184;AC=46;LDAF=0.0219;VT=SNP;AA=c;RSQ=0.9217;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.06,-0.86,-5 22 50357321 rs182147507 C T 100 PASS RSQ=0.3548;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0019;AA=c;AVGPOST=0.9969;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.2,-0.45,-2.12 0|0:0:-0.12,-0.63,-4 0|0:0:-0.06,-0.92,-5 0|0:0:-0.04,-1.11,-5 22 50357350 rs186743459 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;RSQ=0.4519;VT=SNP;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9951;LDAF=0.0031;THETA=0.0003;AF=0.0014;ASN_AF=0.0017;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.2,-0.45,-2.13 0|0:0:-0.02,-1.27,-5 0|0:0:-0.08,-0.78,-5 22 50357416 rs13811 C T 100 PASS RSQ=0.9795;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;LDAF=0.7693;AC=1681;AVGPOST=0.9906;AA=t;AF=0.77;ASN_AF=0.78;AMR_AF=0.79;AFR_AF=0.75;EUR_AF=0.76 GT:DS:GL 1|1:2:-5,-0.82,-0.07 0|1:1:-0.08,-0.76,-4.7 0|0:0:-0.22,-0.46,-1.26 1|1:2:-5,-0.71,-0.1 1|1:2:-5,-0.69,-0.1 22 50357498 rs192375647 C G 100 PASS ERATE=0.0004;AN=2184;VT=SNP;RSQ=0.4488;AA=c;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.18,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.07,-0.85,-5 22 50357532 rs184757057 A T 100 PASS ERATE=0.0004;LDAF=0.0009;AN=2184;VT=SNP;RSQ=0.6072;THETA=0.0017;SNPSOURCE=LOWCOV;AC=1;AA=a;AVGPOST=0.9992;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.07,-0.85,-4.4 0|0:0.35:-1.91,-0.01,-3.66 0|1:1:-5,-0.14,-0.56 22 50357577 rs142470900 G A 100 PASS AA=g;THETA=0.0004;AN=2184;RSQ=0.9335;AVGPOST=0.9997;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.79,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.07,-0.85,-5 22 50357625 rs117325373 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;AVGPOST=0.9996;VT=SNP;AC=23;RSQ=0.9834;LDAF=0.0107;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-2.75,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.15,-5 22 50357657 rs150927168 A G 100 PASS ERATE=0.0005;AN=2184;AC=6;THETA=0.0008;VT=SNP;RSQ=0.8234;LDAF=0.0029;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AA=a;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0,-2.61,-5 0|0:0:-0,-3.8,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.2,-5 22 50357667 rs189822817 C G 100 PASS LDAF=0.0027;AN=2184;RSQ=0.7315;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=4;THETA=0.001;ERATE=0.0003;AVGPOST=0.9982;AF=0.0018;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0,-2.55,-5 0|0:0:-0,-3.8,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.93,-5 22 50357753 rs114714112 C T 100 PASS THETA=0.0023;RSQ=0.9073;AVGPOST=0.9994;AN=2184;AC=6;VT=SNP;AA=c;LDAF=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.12,-0.63,-3.21 0|0:0:-0.05,-0.99,-5 0|0:0:-0.01,-1.92,-5 22 50357966 rs116555962 C T 100 PASS ERATE=0.0004;RSQ=0.8395;THETA=0.0004;AN=2184;VT=SNP;AA=c;AVGPOST=0.9989;LDAF=0.0029;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.23,-0.46,-1.24 0|0:0:-0.06,-0.89,-5 0|0:0.05:-0.11,-0.65,-4.7 22 50358059 rs193159516 T C 100 PASS THETA=0.0065;ERATE=0.0004;AN=2184;AVGPOST=0.9979;AC=8;LDAF=0.0043;VT=SNP;RSQ=0.7822;SNPSOURCE=LOWCOV;AA=t;AF=0.0037;ASN_AF=0.0035;AMR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.06,-0.89,-5 22 50358197 rs29001615 G A 100 PASS ERATE=0.0069;AVGPOST=0.9598;AN=2184;RSQ=0.893;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;LDAF=0.8313;AA=a;AC=1831;AF=0.84;ASN_AF=0.87;AMR_AF=0.84;AFR_AF=0.85;EUR_AF=0.8 GT:DS:GL 1|1:2:-5,-1.2,-0.03 0|1:1:-4.4,-0,-1.97 0|0:0.1:-0.04,-1.05,-5 1|0:1:-5,0,-5 0|1:1:-2.57,-0,-3.09 22 50358368 . GGT G 261 PASS ERATE=0.0005;AVGPOST=0.9985;AN=2184;VT=INDEL;AC=16;THETA=0.0005;RSQ=0.9121;LDAF=0.008;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-0.9,-16.2 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50358446 rs73891202 C T 100 PASS ERATE=0.0004;AN=2184;THETA=0.0005;VT=SNP;AA=c;LDAF=0.0294;SNPSOURCE=LOWCOV;RSQ=0.9738;AC=63;AVGPOST=0.9984;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:-0.32,-0.43,-0.81 0|0:0:-0.07,-0.84,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.11,-0.66,-4.7 22 50358486 rs75763440 C T 100 PASS AC=30;THETA=0.0026;AVGPOST=0.9957;RSQ=0.8829;AN=2184;VT=SNP;AA=c;LDAF=0.0147;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AMR_AF=0.0028;AFR_AF=0.06 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.58,-3.55 0|0:0:-0.03,-1.16,-5 0|0:0:-0.18,-0.46,-3.01 22 50358621 rs185363007 A C 100 PASS AN=2184;LDAF=0.0018;THETA=0.0005;VT=SNP;RSQ=0.7173;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AVGPOST=0.9987;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0.09,-0.74,-3.07 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.91,-5 0|0:0:-0.03,-1.12,-5 22 50358632 rs189819551 C T 100 PASS ERATE=0.0004;AN=2184;RSQ=0.6031;VT=SNP;AA=c;THETA=0.0006;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.07,-0.81,-3.47 0|0:0:-0.05,-0.98,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.06,-0.89,-5 22 50358646 rs150113181 G A 100 PASS ERATE=0.0013;AA=g;AN=2184;AC=13;LDAF=0.0098;VT=SNP;RSQ=0.5906;SNPSOURCE=LOWCOV;AVGPOST=0.9905;THETA=0.0036;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0.07,-0.81,-3.47 0|0:0:-0.07,-0.85,-4.4 0|0:0:-0.02,-1.36,-5 0|0:0:-0.04,-1.11,-5 22 50359034 rs138554306 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;THETA=0.0008;LDAF=0.001;VT=SNP;RSQ=0.4853;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0.05:-0.05,-0.93,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.03,-1.13,-5 22 50359160 rs114733982 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;AC=26;VT=SNP;THETA=0.0006;RSQ=0.9702;LDAF=0.0122;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.39,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-2.51,-5 0|0:0:-0.03,-1.12,-5 22 50359167 rs62231873 G T 100 PASS AA=T;AN=2184;AC=1759;LDAF=0.8047;VT=SNP;ERATE=0.002;SNPSOURCE=LOWCOV;AVGPOST=0.9926;THETA=0.0003;RSQ=0.9804;AF=0.81;ASN_AF=0.81;AMR_AF=0.84;AFR_AF=0.77;EUR_AF=0.81 GT:DS:GL 1|1:2:-5,-1.36,-0.02 0|1:1:-0.19,-0.47,-2.28 0|0:0:-0.22,-0.46,-1.26 1|1:2:-5,-2.31,-0 1|1:2:-5,-1.22,-0.03 22 50359370 rs140297843 G A 100 PASS LDAF=0.0027;AVGPOST=0.9957;AA=G;AN=2184;RSQ=0.3149;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.11,-0.66,-4.7 22 50359390 rs78309238 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0113;AC=24;AVGPOST=0.9989;RSQ=0.9528;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.12,-0.62,-3.12 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.64,-4.7 22 50359418 rs145423532 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.5002;THETA=0.0005;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.12,-0.62,-3.14 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.18,-0.47,-3.09 22 50359578 rs142649136 T G 100 PASS ERATE=0.0004;AVGPOST=0.9986;LDAF=0.0112;RSQ=0.9414;AA=G;AN=2184;VT=SNP;AC=23;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.07,-0.84,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.06,-0.88,-5 22 50359605 rs181391820 G A 100 PASS RSQ=0.6854;AA=G;AN=2184;VT=SNP;AC=10;LDAF=0.0056;ERATE=0.0008;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9961;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.07,-0.82,-3.52 1|0:0.8:-1.82,-0.01,-2.14 0|0:0:-0.06,-0.92,-5 0|0:0:-0.03,-1.12,-5 22 50359685 rs185228480 G A 100 PASS THETA=0.0009;ERATE=0.0005;AA=G;AN=2184;VT=SNP;RSQ=0.474;LDAF=0.0029;SNPSOURCE=LOWCOV;AVGPOST=0.9958;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.54,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.12,-0.61,-3.8 0|0:0:-0.04,-1.1,-5 22 50359787 rs144189617 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9975;LDAF=0.0018;VT=SNP;RSQ=0.392;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.49,-5 22 50359796 rs148298810 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.0018;VT=SNP;THETA=0.0006;AVGPOST=0.9989;RSQ=0.7648;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.43,-5 0|0:0:-0.01,-1.72,-5 22 50359848 rs141390898 C T 100 PASS LDAF=0.0041;AA=C;AN=2184;VT=SNP;ERATE=0.0008;AC=5;RSQ=0.5782;SNPSOURCE=LOWCOV;AVGPOST=0.9958;THETA=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.19,-0.46,-2.3 0|0:0:-0.13,-0.59,-2.22 0|0:0:-0.12,-0.62,-3.12 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.06,-0.91,-5 22 50359902 rs78721569 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9711;AC=344;VT=SNP;LDAF=0.1608;RSQ=0.9208;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;AF=0.16;ASN_AF=0.31;AMR_AF=0.11;AFR_AF=0.02;EUR_AF=0.16 GT:DS:GL 0|1:0.9:-0.48,-0.48,-0.48 0|1:1:-5,-0.04,-1.01 0|0:0:-0.23,-0.46,-1.23 0|1:1:-3.22,-0.29,-0.31 1|0:1:-3.19,-0.49,-0.17 22 50359954 rs116154315 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9944;AC=49;VT=SNP;RSQ=0.9144;LDAF=0.0223;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.47,-2.27 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.88,-5 0|0:0:-0.19,-0.45,-2.14 22 50360035 rs188372735 C T 100 PASS ERATE=0.0005;RSQ=0.3568;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9968;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.9,-5 0|0:0:-0.04,-1.1,-5 22 50360220 . CAG C 263 PASS ERATE=0.0005;THETA=0.0002;LDAF=0.0627;AN=2184;VT=INDEL;AC=133;RSQ=0.9146;AVGPOST=0.9859;AF=0.06;ASN_AF=0.17;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0.05:0,-0.6,-12.2 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50360290 rs150827614 G C 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;ERATE=0.0008;RSQ=0.6157;LDAF=0.0025;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.95,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.07,-0.83,-4.22 0|0:0:-0.09,-0.71,-5 0|0:0:-0.48,-0.48,-0.48 22 50360292 rs139939351 T G 100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;AC=10;AVGPOST=0.9948;SNPSOURCE=LOWCOV;RSQ=0.6745;LDAF=0.0065;ERATE=0.0007;AF=0.0046;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.13,-0.6,-2.31 0|0:0.15:-0.12,-0.63,-3.18 0|0:0:-0.1,-0.71,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50360343 rs73893103 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.9895;LDAF=0.0295;VT=SNP;AVGPOST=0.9993;AC=64;SNPSOURCE=LOWCOV;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0.08,-0.77,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.15,-5 0|0:0:-0.11,-0.65,-4.7 22 50360384 rs181822437 A C 100 PASS LDAF=0.0041;AN=2184;VT=SNP;AA=A;ERATE=0.0011;RSQ=0.5238;AVGPOST=0.9948;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.87,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.67,-5 22 50360463 rs35871519 T A 100 PASS RSQ=0.9909;AC=1777;LDAF=0.8128;AA=T;AN=2184;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0007;AF=0.81;ASN_AF=0.83;AMR_AF=0.85;AFR_AF=0.77;EUR_AF=0.81 GT:DS:GL 1|1:2:-5,-0.84,-0.07 0|1:0.95:-0.19,-0.46,-2.23 0|0:0:-0.48,-0.48,-0.48 1|1:2:-5,-0.93,-0.05 1|1:2:-1.5,-0.37,-0.26 22 50360466 rs187432906 G A 100 PASS AVGPOST=0.9977;LDAF=0.0016;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4157;ERATE=0.0006;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.08,-0.75,-5 0|0:0:-0.2,-0.44,-2.1 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.03,-1.18,-5 0|0:0:-0.27,-0.38,-1.33 22 50360545 rs34597827 T C 100 PASS ERATE=0.0021;AA=C;RSQ=0.9597;AN=2184;AC=1751;THETA=0.0005;VT=SNP;LDAF=0.7992;SNPSOURCE=LOWCOV;AVGPOST=0.9851;AF=0.8;ASN_AF=0.81;AMR_AF=0.83;AFR_AF=0.77;EUR_AF=0.8 GT:DS:GL 1|1:2:-5,-1.1,-0.04 0|1:1:-3,-0.48,-0.17 0|0:0.05:-0.48,-0.48,-0.48 1|1:2:-2.94,-0.47,-0.18 1|1:2:-5,-0.69,-0.1 22 50360628 rs145469094 C T 100 PASS AVGPOST=0.9963;AA=C;AN=2184;AC=8;RSQ=0.667;THETA=0.0005;VT=SNP;ERATE=0.0008;LDAF=0.0044;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.47,-2.44 0|0:0.05:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.02,-1.33,-5 22 50360636 rs147292599 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.7073;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.46,-2.24 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.01,-1.6,-5 22 50360703 rs140952403 G A 100 PASS ERATE=0.0004;LDAF=0.0021;AA=g;RSQ=0.7821;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.01,-1.75,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-2.17,-5 22 50360712 rs149849201 C T 100 PASS ERATE=0.0005;THETA=0.0004;LDAF=0.0066;AN=2184;RSQ=0.669;VT=SNP;AA=c;AC=14;SNPSOURCE=LOWCOV;AVGPOST=0.9941;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.19,-0.45,-2.21 0|0:0:-0.01,-1.74,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-2.15,-5 22 50360740 rs35042741 T G 100 PASS AA=g;THETA=0.0004;AN=2184;LDAF=0.8356;VT=SNP;RSQ=0.9938;SNPSOURCE=LOWCOV;AC=1827;ERATE=0.0006;AVGPOST=0.9982;AF=0.84;ASN_AF=0.83;AMR_AF=0.85;AFR_AF=0.86;EUR_AF=0.81 GT:DS:GL 1|1:2:-5,-1.16,-0.03 0|1:1:-2.99,-0.48,-0.17 0|0:0:-0.04,-1.04,-5 1|1:2:-5,-0.33,-0.27 1|1:2:-5,-2.19,-0 22 50360867 rs117873496 C T 100 PASS ERATE=0.0005;LDAF=0.0116;AN=2184;THETA=0.0005;VT=SNP;AC=23;AA=c;SNPSOURCE=LOWCOV;AVGPOST=0.9974;RSQ=0.9153;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.24,-0.45,-1.18 0|0:0:-0.04,-1.09,-5 0|0:0:-0.19,-0.45,-2.15 22 50360877 rs145890005 G A 100 PASS RSQ=0.9391;AVGPOST=0.9986;LDAF=0.0112;AN=2184;THETA=0.0005;VT=SNP;AC=23;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0006;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0.05:-0.19,-0.45,-2.2 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.03,-1.17,-5 0|0:0:-0.19,-0.46,-2.16 22 50360894 rs115225965 A G 100 PASS AN=2184;VT=SNP;AC=14;RSQ=0.6679;SNPSOURCE=LOWCOV;AVGPOST=0.9931;AA=a;THETA=0.0007;ERATE=0.0006;LDAF=0.0076;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0.19,-0.45,-2.21 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.02,-1.39,-5 0|0:0:-0.2,-0.45,-2.05 22 50361034 rs149007467 C A 100 PASS AC=17;ERATE=0.0005;LDAF=0.0083;THETA=0.0004;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;RSQ=0.9172;AVGPOST=0.9982;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.19,-0.46,-2.16 22 50361063 rs62231876 T C 100 PASS AVGPOST=0.9936;ERATE=0.0013;AN=2184;VT=SNP;AA=c;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1827;RSQ=0.9804;LDAF=0.8337;AF=0.84;ASN_AF=0.83;AMR_AF=0.85;AFR_AF=0.86;EUR_AF=0.81 GT:DS:GL 1|1:2:-5,-0.66,-0.11 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.3 1|1:2:-0.48,-0.48,-0.48 1|1:2:-0.48,-0.48,-0.48 22 50361099 rs117196363 T A 100 PASS ERATE=0.0004;AN=2184;THETA=0.0005;RSQ=0.9564;AVGPOST=0.999;VT=SNP;AC=23;SNPSOURCE=LOWCOV;LDAF=0.0108;AA=t;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.65,-4.7 22 50361153 rs113865762 A G 100 PASS AA=g;LDAF=0.0187;AN=2184;AC=37;AVGPOST=0.9935;VT=SNP;THETA=0.0017;RSQ=0.8641;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.54,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0.05:-0.22,-0.46,-1.27 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.7 22 50361168 rs117560100 C T 100 PASS ERATE=0.0004;AC=52;AN=2184;RSQ=0.8404;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AVGPOST=0.9899;LDAF=0.0253;THETA=0.0003;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.82,-5 0|1:0.75:-0.21,-0.46,-1.36 0|0:0:-0.12,-0.62,-3.13 0|1:0.8:-0.36,-0.41,-0.77 1|0:0.95:-0.49,-0.18,-1.8 22 50361169 rs142038940 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0006;RSQ=0.5118;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.59,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.13,-0.6,-2.97 0|0:0:-0.36,-0.41,-0.77 0|0:0:-0.17,-0.49,-2.67 22 50361290 rs192117709 T G 100 PASS ERATE=0.0004;AN=2184;RSQ=0.5842;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9987;LDAF=0.0012;AC=2;AA=t;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.03,-1.15,-5 0|0:0:-0.04,-1.11,-5 22 50361360 rs75967889 G A 100 PASS ERATE=0.0004;RSQ=0.9731;AA=g;AN=2184;VT=SNP;AC=38;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0179;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.06,-0.88,-4.7 0|0:0:-0.1,-0.69,-3.42 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.02,-1.34,-5 22 50361397 rs35958120 C G 100 PASS LDAF=0.4779;AA=g;AC=1044;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.9849;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9911;AF=0.48;ASN_AF=0.48;AMR_AF=0.54;AFR_AF=0.43;EUR_AF=0.48 GT:DS:GL 0|1:1:-5,0,-5 0|1:0.95:-0.12,-0.61,-3.07 0|0:0:-0.01,-1.49,-5 1|1:2:-3,-0.48,-0.18 1|0:1:-5,-0.13,-0.58 22 50361482 rs77265282 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9766;VT=SNP;LDAF=0.3253;SNPSOURCE=LOWCOV;ERATE=0.0028;AC=718;RSQ=0.9539;AF=0.33;ASN_AF=0.35;AMR_AF=0.3;AFR_AF=0.32;EUR_AF=0.33 GT:DS:GL 1|0:1:-5,-0.02,-1.42 0|0:0:-0.04,-1.04,-5 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.18,-0.47,-2.15 0|1:1:-0.48,-0.48,-0.48 22 50361699 rs183619345 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;RSQ=0.7186;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|1:1:-5,0,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.17,-0.5,-2.82 0|0:0:-0.06,-0.87,-5 22 50361733 rs140277381 T A 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.9266;AC=8;THETA=0.0005;VT=SNP;AVGPOST=0.9993;LDAF=0.0039;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.87,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.07,-0.86,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.06,-0.91,-5 22 50361850 rs117275602 A C 100 PASS AN=2184;AVGPOST=0.9997;THETA=0.0008;LDAF=0.0109;VT=SNP;AC=24;AA=A;RSQ=0.9891;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.11,-5 0|0:0:-0,-2.49,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.37,-5 22 50362124 rs145383197 A G 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;LDAF=0.0113;AC=24;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.975;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.12,-0.63,-3.28 0|0:0:-0.02,-1.39,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.1,-0.67,-5 22 50362129 rs79566265 G A 100 PASS AA=G;AN=2184;RSQ=0.9627;VT=SNP;THETA=0.0006;AVGPOST=0.998;AC=38;LDAF=0.0183;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.11,-0.67,-5 22 50362231 rs186912889 A T 100 PASS LDAF=0.0021;AN=2184;VT=SNP;AVGPOST=0.998;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;THETA=0.0003;RSQ=0.607;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0:-0.07,-0.83,-4.22 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.18,-0.47,-3.07 22 50362278 rs190022016 G A 100 PASS AVGPOST=0.9985;AA=G;AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.5703;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.11,-0.66,-5 0|0:0:-0.19,-0.49,-1.56 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.06,-0.88,-5 22 50362330 rs138015964 A G 100 PASS AVGPOST=0.9977;LDAF=0.012;AA=G;AN=2184;AC=26;THETA=0.0005;VT=SNP;RSQ=0.9221;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.04,-1.1,-5 0|0:0:-0.18,-0.46,-3.03 22 50362347 rs140855979 C T 100 PASS 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ERATE=0.0005;THETA=0.0004;AN=2184;RSQ=0.8027;LDAF=0.0079;VT=SNP;AA=c;AVGPOST=0.9964;AC=15;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.35,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.19,-0.46,-2.32 0|0:0:-0.04,-1.05,-5 22 50363559 rs185230990 G A 100 PASS ERATE=0.0004;LDAF=0.0009;AA=g;AN=2184;RSQ=0.5663;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-2.69,-5 0|0:0:-0.07,-0.82,-4.7 0|0:0:-0.18,-0.47,-2.49 0|0:0:-0.04,-1.05,-5 22 50363601 rs73893108 C G 100 PASS AN=2184;RSQ=0.9905;THETA=0.0005;VT=SNP;AVGPOST=0.9993;AA=c;AC=64;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0293;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.6,-5 22 50363621 rs141496303 T C 100 PASS RSQ=0.9728;AVGPOST=0.9994;AN=2184;VT=SNP;AC=23;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0108;AA=t;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-3.14,-5 22 50363622 rs79311248 C T 100 PASS RSQ=0.9871;AN=2184;AC=26;AVGPOST=0.9997;VT=SNP;LDAF=0.0119;AA=c;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.38,-5 22 50363641 rs117765799 A G 100 PASS ERATE=0.0004;RSQ=0.9687;AA=g;THETA=0.0004;AN=2184;VT=SNP;AC=23;AVGPOST=0.9993;SNPSOURCE=LOWCOV;LDAF=0.0108;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.11,-0.64,-3.28 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0,-2.65,-5 22 50363774 rs188499932 T G 100 PASS AVGPOST=0.9798;RSQ=0.484;LDAF=0.0149;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0029;AC=19;AA=t;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.48,-0.48,-0.48 0|0:0.2:-1.81,-0.38,-0.24 22 50363794 rs35407109 C T 100 PASS AN=2184;VT=SNP;AA=c;AC=734;THETA=0.0006;AVGPOST=0.9918;RSQ=0.9853;SNPSOURCE=LOWCOV;LDAF=0.3366;ERATE=0.0007;AF=0.34;ASN_AF=0.37;AMR_AF=0.32;AFR_AF=0.31;EUR_AF=0.34 GT:DS:GL 0|1:1:-2.98,-0,-2.79 0|0:0.1:-0.19,-0.45,-2.17 0|0:0:-0.12,-0.62,-3.14 0|0:0:-0.18,-0.47,-2.43 0|1:1:-5,-0.71,-0.09 22 50363816 rs150880264 C T 100 PASS ERATE=0.0005;AN=2184;AC=8;THETA=0.0008;VT=SNP;RSQ=0.8231;AA=c;LDAF=0.0044;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.06,-0.89,-5 22 50363889 rs73181194 G A 100 PASS ERATE=0.0004;RSQ=0.9543;AC=269;AA=g;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.1244;SNPSOURCE=LOWCOV;AVGPOST=0.9867;AF=0.12;ASN_AF=0.0035;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.25 GT:DS:GL 0|0:0:-0,-2.17,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.08,-0.79,-3.21 1|0:1:-5,-0,-3.18 0|0:0:-0.1,-0.67,-5 22 50363969 rs191683193 C T 100 PASS AVGPOST=0.9986;LDAF=0.0033;AN=2184;AC=6;THETA=0.0008;VT=SNP;RSQ=0.8062;AA=c;ERATE=0.0008;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.48,-0.48,-0.48 22 50364098 rs62231881 A C 100 PASS AN=2184;LDAF=0.757;VT=SNP;SNPSOURCE=LOWCOV;AC=1655;AA=a;ERATE=0.0007;AVGPOST=0.9932;THETA=0.0003;RSQ=0.9862;AF=0.76;ASN_AF=0.81;AMR_AF=0.8;AFR_AF=0.59;EUR_AF=0.8 GT:DS:GL 1|1:2:-5,-1.25,-0.03 0|1:1.05:-2.07,-0.09,-0.76 0|0:0:-0.08,-0.79,-3.18 1|1:2:-5,-1.19,-0.03 1|1:2:-4.22,-0.52,-0.16 22 50364247 rs139396040 G C 100 PASS AVGPOST=0.9986;LDAF=0.0024;THETA=0.0035;AA=g;AN=2184;VT=SNP;ERATE=0.0008;RSQ=0.7733;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.5,-5 0|0:0:-0,-2.76,-5 0|0:0:-0,-2.61,-5 0|0:0:-0.01,-1.58,-5 22 50364251 rs117839244 C G 100 PASS RSQ=0.9832;AN=2184;VT=SNP;AC=23;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0108;THETA=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-2.22,-5 0|0:0:-0,-2.71,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.01,-1.56,-5 22 50364310 . GCA G 200 PASS AN=2184;VT=INDEL;AC=24;AVGPOST=0.998;RSQ=0.9304;LDAF=0.0111;THETA=0.0007;ERATE=0.0006;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.3,-6.1 0|0:0:0,-1.2,-23.8 0|0:0:0,-2.7,-51.9 0|0:0:0,-1.5,-30 0|0:0:0,-3.3,-63 22 50364311 . CAT C 429 PASS ERATE=0.0004;RSQ=0.9391;AVGPOST=0.9983;LDAF=0.0112;AN=2184;VT=INDEL;AC=24;THETA=0.001;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.3,-6.1 0|0:0:0,-1.2,-18.3 0|0:0:0,-2.7,-51.3 0|0:0:0,-1.5,-27.5 0|0:0:0,-3.9,-67.5 22 50364464 rs150069372 C T 100 PASS ERATE=0.0005;AVGPOST=0.9983;AN=2184;VT=SNP;AC=23;THETA=0.0018;LDAF=0.0113;SNPSOURCE=LOWCOV;RSQ=0.9356;AA=t;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.4,-5 0|0:0:-0.09,-0.72,-4.4 0|0:0:-0.04,-1.02,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.11,-0.64,-4.7 22 50364465 rs146661152 G C 100 PASS ERATE=0.0004;AA=g;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0119;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=25;RSQ=0.944;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.12,-0.63,-3.85 0|0:0:-0.02,-1.25,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.12,-0.61,-4.4 22 50364609 rs184235324 C T 100 PASS ERATE=0.0005;LDAF=0.0009;AN=2184;VT=SNP;AA=c;THETA=0.0091;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5255;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.11,-0.67,-4.4 0|0:0:-0.26,-0.44,-1.07 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.9,-5 0|0:0:-0.15,-0.52,-3.19 22 50414983 rs36147371 C T 100 PASS LDAF=0.4404;AA=C;AN=2184;VT=SNP;RSQ=0.9936;SNPSOURCE=LOWCOV;AC=961;THETA=0.0007;ERATE=0.0007;AVGPOST=0.996;AF=0.44;ASN_AF=0.46;AMR_AF=0.51;AFR_AF=0.32;EUR_AF=0.47 GT:DS:GL 1|0:1:-3.06,-0.46,-0.18 0|1:1:-3.85,-0,-5 0|0:0:-0,-2.45,-5 1|1:2:-5,-0.84,-0.07 1|0:1:-5,-0.73,-0.09 22 50415004 rs144041856 T C 100 PASS AC=18;THETA=0.0004;AA=T;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9869;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0082;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.02,-1.41,-5 0|0:0:-0.04,-1.11,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.81,-5 22 50415200 rs188131238 C T 100 PASS AC=7;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8164;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9984;AF=0.0032;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.39,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.62,-5 22 50415208 rs146440775 C T 100 PASS THETA=0.0009;AA=C;AN=2184;LDAF=0.0037;VT=SNP;AC=9;RSQ=0.804;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0003;AF=0.0041;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0,-2.79,-5 0|0:0:-0,-3.04,-5 22 50415260 rs143114842 G A 100 PASS AC=18;AA=G;AN=2184;RSQ=0.9689;LDAF=0.0084;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0,-3.21,-5 0|0:0:-0,-1.97,-5 0|0:0:-0,-3.17,-5 0|0:0:-0,-2.7,-5 22 50415378 rs180898075 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AVGPOST=0.9962;VT=SNP;RSQ=0.4819;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.19,-0.46,-2.24 0|0:0:-0.11,-0.64,-4 0|1:0.55:-0.13,-0.57,-3.42 22 50415532 rs184506893 T C 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;LDAF=0.0019;RSQ=0.9002;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-2.92,-5 22 50415612 rs151200722 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.9923;AC=82;THETA=0.0006;SNPSOURCE=LOWCOV;LDAF=0.0379;AF=0.04;AMR_AF=0.02;AFR_AF=0.15 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-3.08,-5 22 50415657 rs140377817 T A 100 PASS THETA=0.0004;AN=2184;AVGPOST=0.9947;VT=SNP;AC=379;LDAF=0.1741;SNPSOURCE=LOWCOV;ERATE=0.0012;RSQ=0.986;AA=t;AF=0.17;ASN_AF=0.17;AMR_AF=0.16;AFR_AF=0.17;EUR_AF=0.18 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0.05:-0.08,-0.79,-4.7 1|1:1.9:-5,-0.06,-0.9 0|0:0:-0.05,-0.94,-5 0|0:0:-0.04,-1.1,-5 22 50415682 rs190569352 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.6089;THETA=0.0006;ERATE=0.0008;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9982;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0.04,-1.11,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.38,-5 0|0:0:-0.12,-0.63,-4 22 50415805 rs182226738 G A 100 PASS THETA=0.0026;AA=G;AN=2184;ERATE=0.0009;RSQ=0.9463;VT=SNP;AC=429;AVGPOST=0.9796;LDAF=0.1949;SNPSOURCE=LOWCOV;AF=0.2;ASN_AF=0.18;AMR_AF=0.17;AFR_AF=0.25;EUR_AF=0.18 GT:DS:GL 0|0:0:-0.11,-0.64,-4.22 0|0:0.05:-0.48,-0.48,-0.48 1|1:1.8:-3.03,-0.48,-0.17 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0.19,-0.46,-2.97 22 50415827 . TTTTC T 349 PASS ERATE=0.0005;THETA=0.0004;AN=2184;RSQ=0.9516;VT=INDEL;AVGPOST=0.9831;AC=351;LDAF=0.1565;AF=0.16;ASN_AF=0.17;AMR_AF=0.14;AFR_AF=0.14;EUR_AF=0.18 GT:DS:GL 0|0:0:0,-1.5,-17.1 0|0:0.05:0,-0.3,-3.8 1|1:1.8:-3.1,-0.3,0 0|0:0:0,-0.6,-9.5 0|0:0:0,-0.3,-4.3 22 50415832 . TTTC T 347 PASS RSQ=0.9435;AN=2184;AVGPOST=0.9805;VT=INDEL;LDAF=0.1569;AC=351;THETA=0.0006;ERATE=0.0007;AF=0.16;ASN_AF=0.17;AMR_AF=0.14;AFR_AF=0.14;EUR_AF=0.18 GT:DS:GL 0|0:0:0,-1.4,-11.1 0|0:0.05:0,-0.3,-1.5 1|1:1.8:-3.1,-0.3,0 0|0:0:0,-0.6,-7.4 0|0:0:0,-0.3,-3.1 22 50415834 . TC T 198 PASS AN=2184;AC=382;VT=INDEL;THETA=0.0005;LDAF=0.2169;ERATE=0.0263;AVGPOST=0.8677;RSQ=0.6801;AF=0.17;ASN_AF=0.18;AMR_AF=0.14;AFR_AF=0.18;EUR_AF=0.18 GT:DS:GL 0|0:0.1:0,-1.4,-7.5 0|0:0.25:0,-0.3,-1.5 1|1:1.95:-3.1,-0.3,0 0|0:0.15:0,0,-2.7 0|0:0.05:0,-0.3,-1.4 22 50415900 rs36195165 T C 100 PASS ERATE=0.0021;AC=758;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.973;LDAF=0.3464;AVGPOST=0.9856;AF=0.35;ASN_AF=0.36;AMR_AF=0.31;AFR_AF=0.39;EUR_AF=0.33 GT:DS:GL 0|1:1:-5,0,-5 1|0:0.9:-0.19,-0.46,-2.24 0|0:0:-0.22,-0.46,-1.26 0|0:0.05:-0.18,-0.48,-2.21 0|1:1:-0.15,-0.54,-3.06 22 50415918 . CA C 625 PASS AN=2184;LDAF=0.8165;VT=INDEL;AC=1797;THETA=0.0005;RSQ=0.9348;AVGPOST=0.9771;ERATE=0.0028;AF=0.82;ASN_AF=0.81;AMR_AF=0.83;AFR_AF=0.85;EUR_AF=0.8 GT:DS:GL 1|1:2:-29,-2.4,0 1|1:1.95:0,0,0 0|0:0:0,0,0 1|1:2:-3.7,-0.3,0 1|1:2:0,0,0 22 50416134 rs138283796 C G 100 PASS AVGPOST=0.9986;AN=2184;ERATE=0.0009;VT=SNP;AA=c;THETA=0.0006;RSQ=0.7854;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.07,-0.85,-5 22 50416167 rs143883797 C T 100 PASS AA=C;AC=18;LDAF=0.0083;THETA=0.0004;AN=2184;RSQ=0.9789;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-1.97,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.2,-0.44,-2 22 50416205 rs36183197 C A 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=C;RSQ=0.9969;LDAF=0.327;AN=2184;VT=SNP;AC=714;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.33;ASN_AF=0.36;AMR_AF=0.3;AFR_AF=0.3;EUR_AF=0.33 GT:DS:GL 0|1:1:-5,-0.06,-0.91 1|0:1:-5,0,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.03,-1.17,-5 0|1:1:-0.19,-0.46,-2.16 22 50416217 rs138762204 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.5826;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.44,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0.19,-0.46,-2.15 22 50416238 rs149381074 G A 100 PASS LDAF=0.0133;AC=28;AA=G;AN=2184;VT=SNP;RSQ=0.9527;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.19,-0.45,-2.15 22 50416247 rs36150983 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.9957;VT=SNP;AC=714;AVGPOST=0.998;LDAF=0.3272;SNPSOURCE=LOWCOV;AF=0.33;ASN_AF=0.36;AMR_AF=0.3;AFR_AF=0.3;EUR_AF=0.33 GT:DS:GL 0|1:1:-4.7,-0,-3.4 1|0:1:-5,-0.05,-0.98 0|0:0:-0,-2.32,-5 0|0:0:-0.1,-0.67,-4.4 0|1:1:-0.11,-0.64,-4 22 50416264 rs148569243 G A 100 PASS AC=7;ERATE=0.0004;AVGPOST=0.9985;AA=G;AN=2184;RSQ=0.8511;LDAF=0.004;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0,-3.05,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.12,-0.63,-3.92 22 50416298 rs186855498 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.7652;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9992;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-2.26,-5 0|0:0:-1.65,-0.01,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50416310 rs142004074 T C 100 PASS ERATE=0.0005;RSQ=0.9185;THETA=0.0004;AA=T;AN=2184;VT=SNP;AC=31;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.0146;AF=0.01;AMR_AF=0.0028;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.27,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.11,-0.63,-4 22 50416367 rs190550898 G T 100 PASS AVGPOST=0.9983;AA=G;AN=2184;LDAF=0.0046;VT=SNP;AC=10;THETA=0.0006;RSQ=0.8571;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.11,-0.64,-4 22 50416506 rs146167291 C T 100 PASS AA=C;AN=2184;LDAF=0.1647;AC=360;THETA=0.0005;VT=SNP;RSQ=0.9897;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0007;AF=0.16;ASN_AF=0.17;AMR_AF=0.15;AFR_AF=0.14;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.12,-0.63,-4.1 1|1:2:-5,-0.72,-0.09 0|0:0.25:-1.89,-0.02,-1.48 0|0:0.05:-0.12,-0.6,-3.7 22 50416713 rs181049390 A G 100 PASS ERATE=0.0005;AN=2184;RSQ=0.631;THETA=0.0005;LDAF=0.0015;VT=SNP;AA=A;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.64,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.03,-1.21,-5 0|0:0.05:-0.48,-0.48,-0.48 22 50416718 rs140184333 C T 100 PASS AA=C;AN=2184;VT=SNP;AC=756;THETA=0.0006;RSQ=0.9924;SNPSOURCE=LOWCOV;LDAF=0.3455;ERATE=0.0006;AVGPOST=0.9958;AF=0.35;ASN_AF=0.36;AMR_AF=0.31;AFR_AF=0.38;EUR_AF=0.33 GT:DS:GL 0|1:1:-5,-0,-2.22 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.13 0|0:0:-0.03,-1.19,-5 0|1:1:-0.24,-0.41,-1.47 22 50416750 rs143965697 G A 100 PASS THETA=0.0002;AA=g;AN=2184;AC=20;RSQ=0.8391;VT=SNP;LDAF=0.01;AVGPOST=0.9956;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.27,-5 0|0:0:-0.2,-0.44,-2.03 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0.02,-1.42,-5 0|0:0:-0.03,-1.19,-5 22 50416766 rs185475461 G C 100 PASS THETA=0.0009;AVGPOST=0.9977;AA=G;AN=2184;VT=SNP;LDAF=0.0026;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6367;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.09,-0.73,-5 0|0:0:-0.1,-0.69,-4 0|0:0:-0.01,-1.75,-5 0|0:0:-0.03,-1.25,-5 22 50416771 rs146428555 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;AC=13;RSQ=0.8364;VT=SNP;LDAF=0.0061;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.1,-0.69,-4 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.49,-5 22 50416810 rs139501831 G A 100 PASS AC=12;LDAF=0.0067;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;THETA=0.0011;ERATE=0.0008;RSQ=0.8305;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.13,-0.58,-2.93 0|0:0:-0,-2.19,-5 0|0:0:-0.07,-0.85,-5 22 50416828 rs190298172 A G 100 PASS ERATE=0.0004;RSQ=0.6474;THETA=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AA=A;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.06,-0.86,-5 22 50416854 . CATT C 565 PASS ERATE=0.0005;THETA=0.0004;AN=2184;VT=INDEL;AVGPOST=0.9976;LDAF=0.1648;AC=361;RSQ=0.9919;AF=0.17;ASN_AF=0.17;AMR_AF=0.15;AFR_AF=0.14;EUR_AF=0.19 GT:DS:GL 0|0:0:0,-2.7,-62.3 0|0:0:0,-1.2,-27.7 1|1:2:-30.7,-1.8,0 0|0:0:0,-1.2,-27.7 0|0:0:0,-1.2,-27.5 22 50416892 rs182821710 G A 100 PASS AA=G;AN=2184;THETA=0.0008;LDAF=0.001;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.8942;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.94,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.09,-0.72,-4.4 0|0:0:-0,-2.29,-5 22 50416907 rs187722045 C T 100 PASS AA=C;AN=2184;RSQ=0.7082;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.01,-5 22 50416976 rs192209273 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.8802;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.76,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.12,-0.63,-4 22 50416977 rs183969875 G A 100 PASS LDAF=0.0021;AA=G;AN=2184;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=3;RSQ=0.5808;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.39,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.11,-0.63,-4 22 50417161 rs149699746 A G 100 PASS RSQ=0.7608;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.26,-5 0|0:0:-0,-2.36,-5 0|0:0:-0,-3.03,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.08,-5 22 50417190 rs145555624 A T 100 PASS LDAF=0.0206;AA=T;AN=2184;AC=45;RSQ=0.996;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.1,-5 0|0:0:-0,-3.42,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.07,-0.84,-5 22 50417258 rs36163375 A G 100 PASS ERATE=0.0005;LDAF=0.6733;AA=G;AN=2184;THETA=0.0008;VT=SNP;AC=1471;RSQ=0.9956;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.67;ASN_AF=0.64;AMR_AF=0.7;AFR_AF=0.7;EUR_AF=0.67 GT:DS:GL 1|0:1:-5,-0.02,-1.45 0|1:1:-3.59,-0,-5 1|1:2:-5,-2.38,-0 1|1:2:-5,-1.42,-0.02 1|0:1:-5,-0.01,-1.83 22 50417279 rs147009140 A G 100 PASS AN=2184;AC=45;THETA=0.0005;VT=SNP;AA=A;RSQ=0.9891;SNPSOURCE=LOWCOV;LDAF=0.0204;ERATE=0.0003;AVGPOST=0.9995;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.1,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.83,-5 22 50417411 rs147628995 T C 100 PASS ERATE=0.0005;THETA=0.0004;AA=T;AN=2184;AC=45;LDAF=0.0208;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9862;AVGPOST=0.9992;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-3.25,-5 0|0:0:-0,-2.63,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.01,-1.85,-5 22 50417413 rs142282869 T C 100 PASS AVGPOST=0.9986;THETA=0.0004;RSQ=0.9773;AA=T;AN=2184;LDAF=0.0197;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=42;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-3.25,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.36,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.01,-1.81,-5 22 50417425 rs188527854 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.5;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.96,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.12,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.58,-5 22 50417473 rs192198267 G T 100 PASS AVGPOST=0.9966;THETA=0.0004;AA=G;AN=2184;RSQ=0.4672;VT=SNP;LDAF=0.0026;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.94,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-2,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.29,-5 22 50417483 rs36155743 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.9928;AVGPOST=0.9959;LDAF=0.442;AC=965;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;AF=0.44;ASN_AF=0.46;AMR_AF=0.51;AFR_AF=0.32;EUR_AF=0.47 GT:DS:GL 1|0:1:-5,-0.06,-0.91 0|1:1:-3.7,-0,-5 0|0:0:-0,-2.51,-5 1|1:2:-0.48,-0.48,-0.48 1|0:1:-3.18,-0.49,-0.17 22 50417553 rs148306547 A T 100 PASS LDAF=0.162;AN=2184;AC=359;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9931;ERATE=0.0007;THETA=0.0003;RSQ=0.9804;AF=0.16;ASN_AF=0.17;AMR_AF=0.15;AFR_AF=0.14;EUR_AF=0.18 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.07,-0.84,-5 1|1:2:-5,-1.19,-0.03 0|0:0:-0.03,-1.19,-5 0|0:0:-0.04,-1.08,-5 22 50417668 rs141460854 A G 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9867;SNPSOURCE=LOWCOV;LDAF=0.029;AC=63;THETA=0.0003;AVGPOST=0.9992;AF=0.03;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.09;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0,-2.94,-5 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0.01,-1.81,-5 22 50417685 rs150440093 C T 100 PASS RSQ=0.9934;AA=C;AN=2184;AVGPOST=0.9979;AC=360;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.1653;ERATE=0.0007;THETA=0.0003;AF=0.16;ASN_AF=0.17;AMR_AF=0.15;AFR_AF=0.14;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.03,-5 1|1:2:-5,-3.13,-0 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.08,-5 22 50417724 rs183989041 G T 100 PASS THETA=0.0009;ERATE=0.0004;LDAF=0.0009;RSQ=0.5792;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-2.83,-5 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0,-2.64,-5 22 50417824 rs138270978 G A 100 PASS LDAF=0.0092;AA=G;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.001;AVGPOST=0.9919;AC=14;RSQ=0.6678;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.8 0|0:0:-0.19,-0.45,-2.12 22 50417886 rs187121325 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4968;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.32,-0.4,-0.91 0|0:0:-0.48,-0.48,-0.48 22 50417970 rs191889699 G A 100 PASS ERATE=0.0004;RSQ=0.3739;AA=G;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50418106 rs142910075 A G 100 PASS AA=G;AN=2184;AC=45;LDAF=0.0205;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9951;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-3.27,-5 0|0:0:-0,-2.8,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.66,-5 0|0:0:-0.04,-1.09,-5 22 50418228 rs146126869 A G 100 PASS LDAF=0.0206;AN=2184;AC=45;VT=SNP;THETA=0.0006;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.995;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.02,-1.31,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.04,-1.09,-5 22 50418242 rs138998389 T C 100 PASS ERATE=0.0005;RSQ=0.9406;LDAF=0.0058;THETA=0.0004;AA=T;AN=2184;AC=13;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.04,-1.09,-5 22 50418317 . AAT A 26 PASS ERATE=0.0004;AVGPOST=0.9963;LDAF=0.0131;AN=2184;VT=INDEL;RSQ=0.9107;AC=27;THETA=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-0.6,-10.8 0|0:0:0,-1.5,-24.4 0|0:0:0,-1.2,-20.9 0|0:0:0,-1.8,-28.5 0|0:0:0,-0.6,-9.8 22 50418318 . AT A 295 PASS ERATE=0.0004;LDAF=0.0206;AN=2184;AC=45;VT=INDEL;AVGPOST=0.9989;RSQ=0.979;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:0,-0.6,-8.6 0|0:0:0,-1.5,-20 0|0:0:0,-1.2,-16.2 0|0:0:0,-1.8,-22.4 0|0:0:0,-0.6,-7.6 22 50418326 rs142270198 C T 100 PASS AA=C;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;RSQ=0.7324;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-3.19,-5 0|0:0:-0,-3.12,-5 0|0:0:-0,-2.85,-5 0|0:0:-0,-2.33,-5 22 50418426 rs184366713 C T 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.539;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.24,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.12,-5 22 50418441 rs189257422 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.5736;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.91,-5 0|0:0:-0,-2.94,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.24,-5 22 50418567 rs145932451 T C 100 PASS AVGPOST=0.9986;AC=28;AA=T;AN=2184;RSQ=0.9616;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0135;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0,-2.99,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.07,-0.86,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-2.04,-5 22 50418652 rs148620340 A G 100 PASS ERATE=0.0005;AN=2184;LDAF=0.004;AC=8;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;RSQ=0.9116;AVGPOST=0.9992;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.35,-5 0|0:0:-0,-3.38,-5 22 50418735 rs142108108 A T 100 PASS AA=T;AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.8138;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.85,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.06,-0.86,-5 22 50418822 rs150756995 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.6651;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.43,-5 0|0:0:-0,-2.23,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.6,-5 22 50418873 rs139094479 A C 100 PASS ERATE=0.0004;AVGPOST=0.9994;THETA=0.0004;AN=2184;VT=SNP;AA=A;LDAF=0.0194;SNPSOURCE=LOWCOV;AC=42;RSQ=0.9846;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.31,-5 0|0:0:-0.03,-1.13,-5 22 50418925 rs145192345 T C 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.0176;AC=39;THETA=0.0003;RSQ=0.9804;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0,-2.11,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.89,-5 22 50418926 rs147618811 G C 100 PASS AA=C;THETA=0.0004;RSQ=0.9838;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0176;AC=39;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0,-2.82,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.57,-5 22 50418977 rs142243532 A G 100 PASS AN=2184;VT=SNP;AA=A;LDAF=0.0193;RSQ=0.9797;AC=43;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-2.39,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.02,-1.27,-5 22 50418978 . C CA 114 PASS ERATE=0.0004;RSQ=0.9739;AC=18;LDAF=0.0083;AN=2184;VT=INDEL;AVGPOST=0.9995;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-2.1,-20.3 0|0:0:0,-1.8,-17.4 0|0:0:0,-0.9,-8.4 0|0:0:0,-1.2,-11.6 0|0:0:0,-0.3,-2.8 22 50418996 rs144554206 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;VT=SNP;AC=894;RSQ=0.9924;AVGPOST=0.9954;SNPSOURCE=LOWCOV;LDAF=0.409;AF=0.41;ASN_AF=0.46;AMR_AF=0.49;AFR_AF=0.19;EUR_AF=0.47 GT:DS:GL 1|0:1:-5,-0.11,-0.64 0|1:1:-5,-1.04,-0.04 0|0:0:-0.03,-1.23,-5 1|1:2:-5,-1.72,-0.01 1|0:1:-5,-0.04,-1.03 22 50418999 rs145705419 C T 100 PASS AA=C;LDAF=0.0042;AN=2184;AC=8;VT=SNP;THETA=0.0006;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.6328;AVGPOST=0.9961;AF=0.0037;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.19,-0.46,-2.15 22 50419070 rs182235760 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;RSQ=0.6823;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9984;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.7,-5 0|0:0:-0.48,-0.48,-0.48 22 50419183 rs185583096 G T 100 PASS ERATE=0.0004;AVGPOST=0.9986;RSQ=0.6039;AA=G;AN=2184;LDAF=0.0015;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.1,-0.69,-4.22 0|0:0:-0.08,-0.77,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.03,-1.16,-5 22 50419190 rs148941295 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;AC=45;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0207;RSQ=0.9828;AVGPOST=0.9992;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.16,-0.51,-2.43 0|0:0:-0.08,-0.79,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.04,-1.02,-5 22 50419197 rs143657796 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.9037;AN=2184;THETA=0.0005;VT=SNP;AC=23;AVGPOST=0.9976;SNPSOURCE=LOWCOV;LDAF=0.0111;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.08,-0.76,-5 0|0:0.05:-0.08,-0.78,-5 0|0:0:-1.19,-0.03,-5 22 50419198 rs148103521 G A 100 PASS AC=7;ERATE=0.0004;RSQ=0.6591;AA=G;AN=2184;LDAF=0.004;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9965;AF=0.0032;ASN_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0.05:-0.2,-0.44,-2.03 0|0:0:-0.09,-0.74,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.04,-1.1,-5 22 50419205 rs188746662 G A 100 PASS THETA=0.0009;LDAF=0.0016;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8538;AVGPOST=0.9995;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.13,-0.59,-3.7 0|0:0:-0.03,-1.22,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.48,-5 22 50419223 rs141308289 A G 100 PASS ERATE=0.0004;LDAF=0.0013;AVGPOST=0.9983;AN=2184;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5574;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.01,-1.59,-5 22 50419266 rs145095295 C T 100 PASS ERATE=0.0005;AA=T;AN=2184;VT=SNP;THETA=0.0006;AC=1109;RSQ=0.9924;AVGPOST=0.9959;SNPSOURCE=LOWCOV;LDAF=0.5077;AF=0.51;ASN_AF=0.47;AMR_AF=0.55;AFR_AF=0.56;EUR_AF=0.48 GT:DS:GL 1|0:1:-4.7,-0,-3.44 0|1:1:-1.79,-0.01,-4.7 0|0:0:-0.02,-1.3,-5 1|1:2:-5,-1.65,-0.01 1|0:1:-1.93,-0.01,-4.7 22 50419322 rs138978802 T C 100 PASS AA=T;AN=2184;RSQ=0.9331;AC=6;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.31,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.65,-5 22 50419436 rs142228235 A G 100 PASS ERATE=0.0004;AC=18;LDAF=0.0083;RSQ=0.984;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0011;AA=A;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.69,-5 0|0:0:-0,-3.14,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-2.16,-5 22 50419470 rs150914906 A G 100 PASS AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0019;THETA=0.0006;AA=A;RSQ=0.7527;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.4,-5 22 50419520 . CT C 334 PASS ERATE=0.0005;AC=18;THETA=0.0004;AN=2184;LDAF=0.009;VT=INDEL;RSQ=0.91;AVGPOST=0.9982;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.9,-12.4 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-9.4 0|0:0:0,0,0 22 50419667 rs138378912 T A 100 PASS THETA=0.0009;AA=T;AN=2184;AC=45;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0207;RSQ=0.995;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-2.34,-5 0|0:0:-0.01,-1.64,-5 22 50419712 rs149232497 T C 100 PASS AC=18;AA=T;AN=2184;RSQ=0.9866;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0082;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0.05:-0.01,-1.8,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.38,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.19,-0.46,-2.16 22 50419732 rs144447009 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.7635;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.07,-0.85,-5 22 50419739 rs139522259 C T 100 PASS LDAF=0.0206;AA=C;AN=2184;AC=45;RSQ=0.996;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.07,-0.86,-5 22 50419743 rs145152485 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;LDAF=0.0015;VT=SNP;RSQ=0.8845;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0,-2.51,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.06,-0.86,-5 22 50419757 rs147188893 T C 100 PASS ERATE=0.0004;AC=18;AA=T;AN=2184;AVGPOST=0.9996;LDAF=0.0084;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.9766;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.06,-0.86,-5 22 50419821 rs140550177 T G 100 PASS ERATE=0.0004;RSQ=0.9709;AA=G;AN=2184;LDAF=0.0165;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=36;THETA=0.0007;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.13,-0.6,-3.08 0|0:0:-0.08,-0.79,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.14,-0.57,-3.34 22 50419863 rs144514864 C T 100 PASS ERATE=0.0004;RSQ=0.9589;AA=C;AN=2184;LDAF=0.0173;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=36;THETA=0.0016;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.23,-0.45,-1.22 0|0:0:-0.03,-1.23,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.12,-0.63,-3.92 22 50419867 rs151209791 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9975;THETA=0.0005;VT=SNP;AC=41;LDAF=0.0185;SNPSOURCE=LOWCOV;RSQ=0.9544;AF=0.02;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.02,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0.1:-0.12,-0.62,-3.85 22 50419917 rs140399522 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;RSQ=0.888;AVGPOST=0.9967;VT=SNP;LDAF=0.0097;SNPSOURCE=LOWCOV;AC=21;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.12,-0.61,-2.35 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.95,-5 0|0:0:-0.13,-0.58,-3.44 22 50419944 rs181544946 A T 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=A;AVGPOST=0.9988;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;RSQ=0.7121;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.22,-5 0|0:0:-0.04,-1.06,-5 22 50419986 rs149975233 G A 100 PASS RSQ=0.9813;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0194;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=42;AVGPOST=0.9992;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.01,-1.75,-5 0|0:0:-0.1,-0.7,-4.22 0|0:0:-0,-2.13,-5 22 50419994 rs145207477 G A 100 PASS ERATE=0.0004;LDAF=0.0088;AA=G;AN=2184;AC=20;THETA=0.0005;VT=SNP;RSQ=0.9596;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0:-0.12,-0.6,-3.85 0|0:0:-0,-2.18,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0,-2.05,-5 22 50420000 rs141287989 G A 100 PASS ERATE=0.0004;LDAF=0.0024;AA=G;AN=2184;RSQ=0.7971;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.13,-0.6,-3.8 0|0:0:-0,-2.25,-5 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.01,-1.85,-5 22 50420001 rs186032200 T C 100 PASS ERATE=0.0004;LDAF=0.0016;AA=T;AN=2184;RSQ=0.6238;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9987;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0,-2.34,-5 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.01,-1.87,-5 22 50420014 rs190052427 G A 100 PASS 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0|0:0:-0.06,-0.92,-5 0|0:0:-0.04,-1.05,-5 22 50420426 rs137935059 A G 100 PASS ERATE=0.0005;LDAF=0.0083;AN=2184;AVGPOST=0.9972;AC=16;THETA=0.0005;VT=SNP;AA=-;RSQ=0.8611;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.19,-0.46,-2.21 0|0:0:-0.05,-0.95,-5 0|0:0:-0.07,-0.85,-5 22 50420429 rs185982898 A T 100 PASS ERATE=0.0004;LDAF=0.0027;AN=2184;AC=6;THETA=0.0008;AVGPOST=0.999;VT=SNP;AA=-;SNPSOURCE=LOWCOV;RSQ=0.85;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.19,-0.46,-2.21 0|0:0:-0.05,-0.95,-5 0|0:0:-0.07,-0.85,-5 22 50420437 rs190842528 A C 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;AVGPOST=0.9967;VT=SNP;AA=A;AC=5;SNPSOURCE=LOWCOV;RSQ=0.5552;LDAF=0.0031;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.09,-5 22 50420443 rs143515554 A G 100 PASS ERATE=0.0004;AVGPOST=0.9977;AN=2184;VT=SNP;THETA=0.0027;AA=A;AC=43;SNPSOURCE=LOWCOV;LDAF=0.0195;RSQ=0.9571;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.34,-5 22 50420458 rs147178808 C T 100 PASS AA=C;AN=2184;LDAF=0.004;AC=8;THETA=0.0005;VT=SNP;RSQ=0.8499;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.04,-1.06,-5 22 50420542 rs140406190 G A 100 PASS ERATE=0.0004;RSQ=0.8728;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;THETA=0.0013;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.59,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0,-2.84,-5 22 50420579 rs149287205 T A 100 PASS THETA=0.0009;AA=T;AN=2184;RSQ=0.9771;LDAF=0.0197;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=42;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.79,-5 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RSQ=0.7776;AA=C;AN=2184;AVGPOST=0.9924;ERATE=0.0009;VT=SNP;LDAF=0.013;SNPSOURCE=LOWCOV;THETA=0.001;AC=25;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.09,-5 0|0:0:-0.48,-0.48,-0.48 22 50420938 rs183897755 G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0011;ERATE=0.0011;AC=5;SNPSOURCE=LOWCOV;RSQ=0.4318;AVGPOST=0.9931;LDAF=0.0048;AF=0.0023;ASN_AF=0.0035;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 22 50420961 rs140043407 T C 100 PASS AA=C;RSQ=0.8781;AN=2184;AVGPOST=0.9962;AC=26;THETA=0.0008;VT=SNP;LDAF=0.0126;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.48,-0.48,-0.48 22 50420970 rs143689150 A G 100 PASS ERATE=0.0005;AC=28;AN=2184;AVGPOST=0.9962;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AA=a;RSQ=0.8908;LDAF=0.0129;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.56,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.48,-0.48,-0.48 22 50421036 rs146802521 C T 100 PASS ERATE=0.0005;AA=C;AVGPOST=0.9983;AN=2184;THETA=0.0008;LDAF=0.0186;VT=SNP;RSQ=0.9671;SNPSOURCE=LOWCOV;AC=39;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.14,-0.57,-3.34 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.14,-0.55,-3.85 22 50421059 rs140615416 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;AC=40;VT=SNP;AVGPOST=0.9976;LDAF=0.0194;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9547;AF=0.02;AMR_AF=0.01;AFR_AF=0.08;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0.09,-0.73,-4.22 0|0:0:-0.13,-0.58,-2.8 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.06,-0.89,-5 22 50421102 rs150446484 T G 100 PASS AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0192;SNPSOURCE=LOWCOV;RSQ=0.9919;THETA=0.0007;ERATE=0.0003;AC=42;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.74,-5 0|0:0.15:-2.11,-0.24,-0.38 0|0:0.05:-0.04,-1.07,-5 22 50421168 rs186451388 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;RSQ=0.8286;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-2.54,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.23,-5 0|0:0:-0,-3.07,-5 22 50421432 rs191221893 A C 100 PASS THETA=0.0026;AN=2184;AC=8;VT=SNP;AA=A;AVGPOST=0.9969;RSQ=0.7167;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.005;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.12,-0.63,-4.7 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.4,-0.23,-1.89 0|0:0:-0.19,-0.46,-2.15 22 50421465 rs145364623 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9979;VT=SNP;AC=32;LDAF=0.015;SNPSOURCE=LOWCOV;RSQ=0.9376;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.06 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TGC T 8 PASS AC=17;AN=2184;VT=INDEL;AVGPOST=0.9942;LDAF=0.0098;ERATE=0.0008;RSQ=0.7453;THETA=0.0007;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0.05:0,0,0 0|0:0:0,-0.3,-5.8 0|0:0:0,-0.3,-3.6 0|0:0:0,0,0 0|0:0:0,0,0 22 50421571 rs149212436 C A 100 PASS AA=C;RSQ=0.8133;AVGPOST=0.9907;AN=2184;THETA=0.0008;VT=SNP;AC=34;LDAF=0.0192;ERATE=0.0008;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07 GT:DS:GL 0|0:0.2:-0.19,-0.46,-2.75 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.19,-0.46,-2.24 0|0:0.05:-0.19,-0.46,-2.38 0|0:0.05:-0.48,-0.48,-0.48 22 50421879 rs182975331 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=1;RSQ=0.3135;AVGPOST=0.9968;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.19,-0.47,-2.27 0|0:0:-0.19,-0.45,-2.15 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.87,-5 22 50421897 . A AGCCCTCGC 210 PASS THETA=0.0004;LDAF=0.1145;AN=2184;VT=INDEL;ERATE=0.0062;RSQ=0.6751;AVGPOST=0.9144;AC=209;AF=0.1;ASN_AF=0.09;AMR_AF=0.2;AFR_AF=0.07;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-0.9,-16.8 0|0:0.15:0,0,0 0|0:0.05:0,0,0 0|0:0:0,0,0 0|0:0.15:0,0,0 22 50422023 rs187608305 T C 100 PASS THETA=0.0014;AA=T;AN=2184;VT=SNP;AVGPOST=0.9915;SNPSOURCE=LOWCOV;RSQ=0.8174;ERATE=0.0007;AC=39;LDAF=0.0203;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.04,-1.03,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.85,-5 22 50422045 rs143415188 A G 100 PASS AVGPOST=0.9342;AN=2184;THETA=0.0005;VT=SNP;AA=A;AC=87;LDAF=0.0592;SNPSOURCE=LOWCOV;ERATE=0.0029;RSQ=0.5462;AF=0.04;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.18,-0.46,-2.76 0|0:0:-0.21,-0.46,-1.36 0|0:0.4:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.7 22 50422048 rs137905187 C G 100 PASS AA=C;RSQ=0.7788;AN=2184;THETA=0.0008;LDAF=0.1827;VT=SNP;AC=369;AVGPOST=0.9176;SNPSOURCE=LOWCOV;ERATE=0.0058;AF=0.17;ASN_AF=0.17;AMR_AF=0.14;AFR_AF=0.17;EUR_AF=0.18 GT:DS:GL 0|0:0.3:-0.18,-0.46,-2.76 0|0:0:-0.21,-0.46,-1.36 1|1:1.95:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.7 22 50422208 rs192856622 C T 100 PASS AVGPOST=0.9775;AA=C;AN=2184;VT=SNP;THETA=0.0018;AC=41;ERATE=0.0018;SNPSOURCE=LOWCOV;RSQ=0.6237;LDAF=0.0245;AF=0.02;AMR_AF=0.01;AFR_AF=0.06;EUR_AF=0.01 GT:DS:GL 0|0:0.2:-0.1,-0.68,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.34,-0.39,-0.87 22 50422348 rs36138276 G A 100 PASS LDAF=0.4527;ERATE=0.0014;RSQ=0.9458;AA=G;AN=2184;AC=993;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.002;AVGPOST=0.9675;AF=0.45;ASN_AF=0.47;AMR_AF=0.53;AFR_AF=0.34;EUR_AF=0.48 GT:DS:GL 1|0:1.3:-5,-0.9,-0.06 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|1:2:-2.88,-0.47,-0.18 1|0:1:-2.75,-0.02,-1.42 22 50422380 rs145779552 A G 100 PASS ERATE=0.0014;AC=48;THETA=0.0004;RSQ=0.7667;AVGPOST=0.9857;AN=2184;VT=SNP;LDAF=0.0257;AA=A;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50422385 rs36171610 A G 100 PASS RSQ=0.859;AA=G;AN=2184;VT=SNP;AC=1119;LDAF=0.5051;AVGPOST=0.9156;SNPSOURCE=LOWCOV;ERATE=0.0084;THETA=0.0003;AF=0.51;ASN_AF=0.48;AMR_AF=0.55;AFR_AF=0.57;EUR_AF=0.48 GT:DS:GL 1|0:1.15:-5,-0.65,-0.11 0|1:1:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 1|1:1.95:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 22 50422411 . GCCCTCCCCC G 123 PASS RSQ=0.501;LDAF=0.0511;AN=2184;VT=INDEL;ERATE=0.0051;AVGPOST=0.9398;AC=58;THETA=0.0003;AF=0.03;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.09 GT:DS:GL 0|0:0.05:0,-0.3,-8.9 0|0:0:0,0,0 0|0:0.15:0,0,0 0|0:0.05:0,0,0 0|0:0:0,0,0 22 50422420 rs141216971 C G 100 PASS ERATE=0.0005;RSQ=0.9682;AC=1125;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.5164;SNPSOURCE=LOWCOV;AVGPOST=0.9825;AF=0.52;ASN_AF=0.47;AMR_AF=0.55;AFR_AF=0.59;EUR_AF=0.48 GT:DS:GL 1|0:1.1:-1.74,-0.39,-0.24 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.36,-0.44,-0.7 1|1:2:-0.48,-0.48,-0.48 1|0:1:-0.34,-0.39,-0.87 22 50422623 rs183067478 A G 100 PASS ERATE=0.0004;AN=2184;RSQ=0.6725;THETA=0.0008;LDAF=0.0015;VT=SNP;AA=-;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.04,-1.11,-5 22 50422715 rs187700366 G A 100 PASS RSQ=0.5469;AN=2184;VT=SNP;THETA=0.0028;AA=-;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-3.02,-5 0|0:0:-0,-2.33,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0,-4.7,-5 22 50422962 rs150766710 A G 100 PASS ERATE=0.0004;AN=2184;THETA=0.0008;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5898;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.13,-0.59,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.04,-1.1,-5 22 50423005 . T TG 173 PASS RSQ=0.5616;AN=2184;VT=INDEL;AC=41;ERATE=0.0011;AVGPOST=0.9651;LDAF=0.0297;THETA=0.001;AF=0.02;ASN_AF=0.05;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0.2:0,-0.4,-4.4 0|0:0:0,-0.3,-3.3 0|0:0:0,-2.1,-23.8 0|0:0.05:-0.2,-0.1,0 0|0:0:0,0,0 22 50423066 rs192324063 A G 100 PASS THETA=0.0021;LDAF=0.0013;RSQ=0.7279;AN=2184;VT=SNP;AVGPOST=0.9993;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0.05:-0.07,-0.82,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.14,-0.57,-4.1 22 50423134 rs149533434 T C 100 PASS ERATE=0.0004;LDAF=0.0211;AN=2184;AC=45;VT=SNP;AA=-;RSQ=0.9736;SNPSOURCE=LOWCOV;AVGPOST=0.9984;THETA=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.07,-0.82,-5 22 50423249 rs146043645 C T 100 PASS AA=C;AN=2184;LDAF=0.0037;RSQ=0.6011;VT=SNP;THETA=0.0033;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9965;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.67,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.95,-5 0|0:0:-0.11,-0.64,-3.66 0|0:0:-0.48,-0.48,-0.48 22 50423305 rs139973179 C A 100 PASS ERATE=0.0004;AA=C;RSQ=0.931;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0099;SNPSOURCE=LOWCOV;AC=21;AVGPOST=0.9984;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.18,-0.47,-2.3 0|0:0:-0.2,-0.45,-2.08 0|0:0:-0.06,-0.91,-5 0|0:0:-0.04,-1.09,-5 22 50423315 rs143542565 C T 100 PASS ERATE=0.0005;AA=C;RSQ=0.9706;AN=2184;LDAF=0.0208;VT=SNP;AC=44;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9982;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.12,-0.63,-3.27 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.03,-1.12,-5 22 50423337 rs146791281 G C 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;AC=40;AVGPOST=0.9962;LDAF=0.0186;VT=SNP;RSQ=0.9307;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.55,-2.91 0|0:0:-0.04,-1.1,-5 22 50423419 rs148526391 A G 100 PASS AN=2184;LDAF=0.1719;VT=SNP;AVGPOST=0.9858;AA=A;RSQ=0.9593;AC=369;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;AF=0.17;ASN_AF=0.18;AMR_AF=0.15;AFR_AF=0.13;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0.05:-0.2,-0.45,-2.14 1|1:1.95:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50423454 rs142885522 C T 100 PASS ERATE=0.0005;AA=C;AVGPOST=0.9994;AN=2184;AC=46;VT=SNP;THETA=0.0011;LDAF=0.0212;SNPSOURCE=LOWCOV;RSQ=0.9883;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.13,-0.59,-3.08 0|0:0:-0.12,-0.62,-4 0|0:0:-0.1,-0.67,-4.22 0|0:0.05:-0.19,-0.45,-2.14 22 50423570 rs151085463 T G 100 PASS ERATE=0.0004;AVGPOST=0.9994;AN=2184;AC=46;THETA=0.0005;VT=SNP;LDAF=0.0212;SNPSOURCE=LOWCOV;RSQ=0.9883;AA=t;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.02,-1.4,-5 22 50423579 rs141069585 C T 100 PASS ERATE=0.0004;RSQ=0.9882;AVGPOST=0.9994;THETA=0.0004;AA=T;AN=2184;AC=46;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0213;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0.17,-0.5,-5 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.03,-1.17,-5 22 50424050 rs147946331 A G 100 PASS ERATE=0.0004;LDAF=0.0095;THETA=0.0004;AN=2184;RSQ=0.9691;AC=20;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.81,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.17,-0.5,-2.79 0|0:0:-0.21,-0.43,-1.89 22 50424170 rs184662424 C A 100 PASS ERATE=0.0005;LDAF=0.0013;AA=C;AN=2184;VT=SNP;RSQ=0.6802;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.47,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.07,-0.83,-5 22 50424400 rs36168477 C T 100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.9943;AVGPOST=0.9971;AC=1059;LDAF=0.4844;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.48;ASN_AF=0.47;AMR_AF=0.54;AFR_AF=0.47;EUR_AF=0.48 GT:DS:GL 1|0:1:-1.78,-0.01,-5 0|1:1:-5,-0,-2.72 0|0:0:-0,-2.3,-5 1|1:2:-5,-0.9,-0.06 1|0:1:-5,-0,-1.97 22 50424443 rs189293627 G A 100 PASS ERATE=0.0004;LDAF=0.0013;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;RSQ=0.7748;AVGPOST=0.9992;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.84,-5 22 50424509 rs145740786 T A 100 PASS RSQ=0.7529;AA=T;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0,-3.62,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.06,-0.86,-5 22 50424590 rs138685054 A G 100 PASS ERATE=0.0004;AN=2184;RSQ=0.7371;LDAF=0.0015;VT=SNP;THETA=0.0006;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.07,-0.84,-5 0|0:0:-0,-2.61,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0,-2.09,-5 22 50424593 rs148847202 T C 100 PASS ERATE=0.0004;AVGPOST=0.9994;LDAF=0.0187;AA=T;AN=2184;VT=SNP;AC=41;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.985;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.89,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0,-2.36,-5 22 50424684 rs143520954 A G 100 PASS RSQ=0.9937;AA=G;AN=2184;AC=46;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0212;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0.01,-1.59,-5 0|0:0:-0,-2.36,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.66,-5 22 50424799 rs192649163 C T 100 PASS LDAF=0.0027;AA=C;RSQ=0.9231;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0027;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.26,-5 22 50424881 . ATG A 303 PASS ERATE=0.0004;AN=2184;AC=46;VT=INDEL;LDAF=0.0212;AVGPOST=0.9995;RSQ=0.99;THETA=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:0,-1.8,-28.7 0|0:0.05:0,0,0 0|0:0:0,-0.9,-10.8 0|0:0:0,0,0 0|0:0:0,-0.3,-3.3 22 50424886 rs184269039 T G 100 PASS RSQ=0.876;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0,-2.59,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.59,-5 22 50424893 rs148032669 T C 100 PASS RSQ=0.9926;AA=T;AN=2184;AVGPOST=0.9962;THETA=0.0005;VT=SNP;ERATE=0.0008;LDAF=0.4629;SNPSOURCE=LOWCOV;AC=1012;AF=0.46;ASN_AF=0.47;AMR_AF=0.54;AFR_AF=0.37;EUR_AF=0.48 GT:DS:GL 1|0:1:-4.4,-0,-5 0|1:1:-5,-1.16,-0.03 0|0:0:-0,-2.53,-5 1|1:2:-0.48,-0.48,-0.48 1|0:1:-5,0,-5 22 50424921 rs141709018 A G 100 PASS AN=2184;AC=26;VT=SNP;AVGPOST=0.9971;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9053;LDAF=0.0129;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.07,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.83,-5 22 50424925 rs146002211 T C 100 PASS THETA=0.0009;AA=T;AN=2184;LDAF=0.004;VT=SNP;AVGPOST=0.9993;AC=9;RSQ=0.9264;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.83,-5 22 50424976 rs138740005 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;LDAF=0.0178;VT=SNP;AC=34;RSQ=0.8647;SNPSOURCE=LOWCOV;AVGPOST=0.994;AF=0.02;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.04 GT:DS:GL 0|0:0.15:-0.03,-1.22,-5 0|0:0:-0,-3.34,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0,-3.66,-5 22 50425071 rs117136862 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.8904;LDAF=0.0122;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AC=25;AF=0.01;ASN_AF=0.04 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.51,-5 0|0:0:-0,-1.95,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.01,-1.75,-5 22 50425083 rs189033837 T A 100 PASS ERATE=0.0004;LDAF=0.0009;RSQ=0.6776;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AC=2;AVGPOST=0.9992;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.39,-5 0|0:0:-0,-3.34,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-2.34,-5 0|0:0:-0.01,-1.6,-5 22 50425444 rs181149095 A C 100 PASS ERATE=0.0005;RSQ=0.5469;AN=2184;VT=SNP;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AVGPOST=0.9987;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-3.4,-5 0|0:0:-0,-2.86,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.4,-5 22 50425485 rs6010235 G A 100 PASS AA=G;AN=2184;AC=46;VT=SNP;AVGPOST=0.9989;RSQ=0.9797;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0213;THETA=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.02,-1.29,-5 22 50425489 rs186383122 T C 100 PASS AA=T;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;THETA=0.0003;RSQ=0.6622;AF=0.0018;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.35,-5 22 50425498 rs6010237 T A 100 PASS THETA=0.0009;LDAF=0.0211;AA=T;AN=2184;AC=46;VT=SNP;AVGPOST=0.9991;RSQ=0.9835;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0,-2.85,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.38,-5 22 50425577 . A AT 183 PASS ERATE=0.0005;AC=52;AN=2184;VT=INDEL;RSQ=0.9485;AVGPOST=0.9968;THETA=0.0007;LDAF=0.0243;AF=0.02;AMR_AF=0.01;AFR_AF=0.09;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.8,-23.3 0|0:0:0,-0.3,-2.7 0|0:0:0,-0.6,-7.8 0|0:0:0,-2.4,-29.7 0|0:0:0,-0.3,-3.6 22 50425603 . TCA T 40 PASS RSQ=0.4825;THETA=0.0004;AN=2184;VT=INDEL;AC=87;ERATE=0.0083;LDAF=0.0689;AVGPOST=0.9155;AF=0.04;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.09;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-1.2,-18.6 0|0:0.1:0,0,0 0|0:0.3:0,0,0 0|0:0:0,-0.6,-21.4 0|0:0.1:0,-0.3,-4.9 22 50425610 rs28642208 C A 100 PASS AC=17;AA=C;AN=2184;LDAF=0.009;THETA=0.0005;VT=SNP;AVGPOST=0.9913;RSQ=0.6498;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;ASN_AF=0.03;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.09,-0.72,-3.66 0|0:0:-0,-2.06,-5 0|0:0:-0.11,-0.64,-4.1 22 50425616 . C CAT 57 PASS AC=48;LDAF=0.024;AN=2184;VT=INDEL;THETA=0.0006;RSQ=0.8992;AVGPOST=0.9938;ERATE=0.0007;AF=0.02;AMR_AF=0.0028;AFR_AF=0.1 GT:DS:GL 0|0:0:0,-1.2,-18.4 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-1.8,-23.7 0|0:0:0,-0.3,-4.6 22 50425637 rs28753402 A G 100 PASS ERATE=0.03;RSQ=0.6132;AN=2184;AC=842;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.7762;LDAF=0.3923;AF=0.39;ASN_AF=0.32;AMR_AF=0.46;AFR_AF=0.37;EUR_AF=0.41 GT:DS:GL 1|0:1:-2.32,-0.01,-1.74 0|1:0.95:-0.2,-0.45,-2.14 0|0:0.3:-0.3,-0.43,-0.87 1|0:1.45:-5,-0.06,-0.92 1|0:0.85:-0.48,-0.48,-0.48 22 50425652 . T TA 93 PASS RSQ=0.513;ERATE=0.0253;AN=2184;AVGPOST=0.7166;VT=INDEL;LDAF=0.58;THETA=0.0006;AC=1328;AF=0.61;ASN_AF=0.68;AMR_AF=0.64;AFR_AF=0.5;EUR_AF=0.6 GT:DS:GL 1|0:1.35:-3.1,-0.3,0 1|1:1.2:0,0,0 1|0:0.95:0,0,0 1|1:1.8:-7.7,-1.1,0 1|0:0.85:0,0,0 22 50425689 rs139271584 G A 100 PASS LDAF=0.0042;AA=G;AN=2184;RSQ=0.5588;VT=SNP;ERATE=0.001;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9958;THETA=0.0003;AF=0.0023;ASN_AF=0.0035;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.13,-0.6,-3.8 0|0:0.1:-0.2,-0.44,-1.98 0|0:0:-0.03,-1.15,-5 0|0:0:-0.08,-0.77,-5 22 50425698 rs150008956 T C 100 PASS THETA=0.0009;AVGPOST=0.9936;RSQ=0.5659;AA=T;AN=2184;ERATE=0.0009;VT=SNP;AC=10;LDAF=0.0061;SNPSOURCE=LOWCOV;AF=0.0046;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.03,-1.18,-5 0|0:0:-0.02,-1.26,-5 22 50425712 rs28377123 T C 100 PASS AA=C;AN=2184;AC=46;THETA=0.0005;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0213;RSQ=0.9769;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.19,-0.45,-2.19 0|0:0:-0.03,-1.14,-5 0|0:0:-0.01,-1.48,-5 22 50425722 rs28700063 A T 100 PASS LDAF=0.023;AC=48;THETA=0.0004;AN=2184;RSQ=0.9552;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9974;AF=0.02;AMR_AF=0.0028;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0.02,-1.32,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.75,-5 22 50425772 rs144790755 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.5826;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-2.15,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.02,-1.33,-5 22 50425773 rs12157431 G A 100 PASS LDAF=0.0036;AA=g;RSQ=0.6545;AN=2184;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0006;THETA=0.0003;AF=0.0023;ASN_AF=0.01;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0,-2.63,-5 0|0:0:-0,-2.17,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.02,-1.29,-5 22 50425774 rs115798056 C A 100 PASS ERATE=0.0005;AA=C;AC=48;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9976;LDAF=0.0226;RSQ=0.9618;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.97,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.02,-1.34,-5 22 50425779 rs4838881 C T 100 PASS LDAF=0.4846;AA=T;AN=2184;AC=1057;RSQ=0.9861;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9925;AF=0.48;ASN_AF=0.47;AMR_AF=0.54;AFR_AF=0.47;EUR_AF=0.48 GT:DS:GL 1|0:1:-1.15,-0.03,-5 0|1:1:-5,0,-5 0|0:0:-0,-2,-5 1|1:2:-5,-1.67,-0.01 1|0:1:-2.07,-0,-4 22 50425853 rs141836402 A G 100 PASS ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0016;AN=2184;RSQ=0.5945;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.04,-1.08,-5 22 50426033 rs140137911 C G 100 PASS ERATE=0.0004;AVGPOST=0.9985;RSQ=0.6566;AA=C;AN=2184;LDAF=0.0018;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0.01,-1.85,-5 22 50426068 rs150297214 T C 100 PASS LDAF=0.0027;AA=T;AN=2184;RSQ=0.9351;AC=6;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AF=0.0027;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0,-3.15,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-4.7,-5 22 50426101 rs12169380 G C 100 PASS THETA=0.0004;LDAF=0.0042;AA=G;AN=2184;VT=SNP;AC=9;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.9747;ERATE=0.0003;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.68,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0,-3.8,-5 22 50426140 rs116042408 A G 100 PASS ERATE=0.0004;AVGPOST=0.9977;THETA=0.0002;AN=2184;RSQ=0.7359;AC=6;VT=SNP;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0031;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0,-2.92,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-2.36,-5 22 50426164 rs73181195 C T 100 PASS AC=7;AA=C;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.0017;RSQ=0.7524;SNPSOURCE=LOWCOV;AVGPOST=0.9974;LDAF=0.0045;AF=0.0032;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.97,-5 0|0:0:-0,-3.66,-5 0|0:0:-0,-3.49,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.01,-1.8,-5 22 50426202 rs7287476 G A 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;RSQ=0.9853;LDAF=0.0196;SNPSOURCE=LOWCOV;THETA=0.0007;AC=42;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-3.74,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.07,-0.85,-5 22 50426274 rs115308061 T C 100 PASS AA=T;AN=2184;AC=46;VT=SNP;RSQ=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.021;THETA=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-2.22,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.11,-0.64,-4 22 50426283 rs137960630 C T 100 PASS THETA=0.0009;ERATE=0.0004;AA=C;AN=2184;VT=SNP;AVGPOST=0.998;RSQ=0.9736;SNPSOURCE=LOWCOV;AC=60;LDAF=0.0277;AF=0.03;ASN_AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.01,-1.55,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.06,-0.89,-5 22 50426314 rs185443365 C G 100 PASS RSQ=0.7901;AA=C;AN=2184;LDAF=0.0032;AC=6;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.0027;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-2.17,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.05,-0.99,-5 22 50426373 rs7284790 C A 100 PASS ERATE=0.0005;AVGPOST=0.9985;LDAF=0.0218;THETA=0.0004;AN=2184;AC=46;VT=SNP;SNPSOURCE=LOWCOV;AA=a;RSQ=0.9733;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0,-1.97,-5 0|0:0:-0.11,-0.64,-3.7 0|0:0:-0.04,-1.05,-5 22 50426420 rs144746997 G A 100 PASS AA=g;RSQ=0.6457;AN=2184;ERATE=0.0009;VT=SNP;THETA=0.0011;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9974;LDAF=0.0031;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.48,-0.48,-0.48 22 50426667 rs6010193 C T 100 PASS ERATE=0.0005;AN=2184;RSQ=0.9487;AVGPOST=0.9972;LDAF=0.0205;VT=SNP;AA=c;THETA=0.0006;AC=43;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.14,-0.55,-3.3 0|0:0:-0.05,-0.98,-5 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0.22,-0.43,-1.79 22 50426676 rs6010147 G A 100 PASS THETA=0.0009;ERATE=0.0005;LDAF=0.0374;AA=g;AN=2184;AVGPOST=0.9962;AC=80;VT=SNP;RSQ=0.9607;SNPSOURCE=LOWCOV;AF=0.04;AMR_AF=0.02;AFR_AF=0.15 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.78,-3.8 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.22,-0.43,-1.79 22 50426712 rs146285001 T C 100 PASS RSQ=0.9911;AN=2184;AC=46;THETA=0.0005;VT=SNP;LDAF=0.0212;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AA=t;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.24,-0.4,-1.46 0|0:0:-0.03,-1.19,-5 0|0:0:-0.04,-1.07,-5 22 50426740 rs190944790 A T 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.6252;AVGPOST=0.9994;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AA=a;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.04,-1.03,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.53,-5 22 50426759 rs6010149 A G 100 PASS AN=2184;LDAF=0.0199;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0006;RSQ=0.9624;AC=42;AVGPOST=0.9982;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.07,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.02,-1.32,-5 22 50426815 rs78631023 A C 100 PASS THETA=0.0009;ERATE=0.0023;AN=2184;VT=SNP;AC=56;RSQ=0.7989;AVGPOST=0.9837;SNPSOURCE=LOWCOV;LDAF=0.0306;AA=a;AF=0.03;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.09;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.13,-0.58,-2.85 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 22 50426831 rs183465146 C G 100 PASS ERATE=0.0004;AN=2184;RSQ=0.7534;AVGPOST=0.9997;VT=SNP;AA=c;THETA=0.0006;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.99,-5 0|0:0:-0,-3.08,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.19,-0.45,-2.15 22 50426891 rs113013106 C T 100 PASS AN=2184;RSQ=0.8247;AVGPOST=0.999;VT=SNP;AA=c;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.19,-0.46,-2.01 0|0:0:-0,-2.37,-5 22 50426894 rs148061457 G A 100 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9986;AA=g;AN=2184;RSQ=0.543;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.1,-0.67,-3.92 0|0:0:-0,-2.11,-5 22 50426944 rs185957849 G A 100 PASS ERATE=0.0005;AA=g;THETA=0.0004;AN=2184;RSQ=0.7202;LDAF=0.0032;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-2.06,-5 22 50426987 rs137834 G A 100 PASS ERATE=0.0004;AA=g;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.5148;AVGPOST=0.997;SNPSOURCE=LOWCOV;RSQ=0.9942;AC=1124;AF=0.51;ASN_AF=0.53;AMR_AF=0.46;AFR_AF=0.53;EUR_AF=0.52 GT:DS:GL 0|1:1:-2.32,-0.01,-1.73 1|0:1:-5,-0,-4.7 1|1:2:-5,-1.72,-0.01 0|0:0:-0.02,-1.46,-5 0|1:1:-5,0,-5 22 50427200 rs141819383 G C 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=g;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6288;THETA=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.09,-0.75,-3.85 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.14,-5 22 50427478 rs150619530 G T 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6947;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.07,-0.86,-5 22 50427511 rs144752242 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0014;AN=2184;RSQ=0.6791;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AVGPOST=0.9992;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.15,-0.55,-3.19 0|0:0:-0.19,-0.46,-2 0|0:0:-0.48,-0.48,-0.48 22 50427557 rs147506788 G A 100 PASS ERATE=0.0005;LDAF=0.0071;AA=G;AN=2184;VT=SNP;AC=14;AVGPOST=0.997;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.8374;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.19,-0.46,-1.95 0|0:0:-0.13,-0.59,-3.7 0|0:0:-0.07,-0.81,-5 0|0:0:-0.48,-0.48,-0.48 22 50427588 rs191606156 G A 100 PASS AVGPOST=0.9983;AA=G;AN=2184;AC=6;VT=SNP;ERATE=0.001;LDAF=0.0029;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.7406;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.13,-0.58,-2.95 0|0:0:-0.14,-0.57,-2.84 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.13,-0.6,-3.66 22 50427673 rs7286953 T C 100 PASS ERATE=0.0004;AN=2184;AC=46;RSQ=0.9814;AVGPOST=0.999;VT=SNP;LDAF=0.0214;SNPSOURCE=LOWCOV;THETA=0.001;AA=t;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.24,-0.41,-1.54 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.41,-1.49 22 50427821 . CAG C 242 PASS THETA=0.0004;AN=2184;AC=46;VT=INDEL;LDAF=0.0214;RSQ=0.9702;ERATE=0.0006;AVGPOST=0.9984;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0.05:0,-0.9,-16.1 0|0:0:0,-1.5,-24.5 0|0:0:0,-0.9,-16.2 0|0:0:0,-0.3,-5.4 0|0:0:0,-0.9,-15.7 22 50427839 rs183064152 A G 100 PASS LDAF=0.0027;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;AA=A;RSQ=0.8865;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.52,-5 22 50427861 rs145661166 C G 100 PASS ERATE=0.0005;LDAF=0.0009;AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5929;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.94,-5 22 50427923 rs187958932 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=20;VT=SNP;THETA=0.0006;AVGPOST=0.997;LDAF=0.0097;SNPSOURCE=LOWCOV;RSQ=0.8724;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.67,-3.92 0|0:0:-0.48,-0.48,-0.48 22 50428159 rs192989666 C T 100 PASS ERATE=0.0005;AA=C;LDAF=0.0016;AN=2184;VT=SNP;RSQ=0.6784;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9987;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.18,-0.47,-2.37 0|0:0:-0.03,-1.25,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.42,-5 22 50428162 rs182155106 A G 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.4772;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.18,-0.47,-2.38 0|0:0:-0.02,-1.26,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.43,-5 22 50428178 rs7288833 A T 100 PASS ERATE=0.0004;AVGPOST=0.9994;THETA=0.0004;LDAF=0.0202;AN=2184;VT=SNP;AA=A;AC=44;RSQ=0.9878;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.18,-0.47,-2.38 0|0:0:-0.04,-1.01,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.03,-1.16,-5 22 50428239 rs137836 T C 100 PASS AA=C;RSQ=0.2772;LDAF=0.9636;AC=2158;ERATE=0.0085;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9374;SNPSOURCE=LOWCOV;AF=0.99;ASN_AF=0.99;AMR_AF=1;AFR_AF=0.98;EUR_AF=0.99 GT:DS:GL 1|1:1.95:-2.34,-0.42,-0.21 1|1:2:-0.48,-0.48,-0.48 1|1:2:-0.48,-0.48,-0.48 1|1:1.95:-0.48,-0.48,-0.48 1|1:2:-0.48,-0.48,-0.48 22 50428267 rs192394834 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6313;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.19,-0.46,-2.3 0|0:0:-0.13,-0.58,-3.59 0|0:0:-0.03,-1.23,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-3.92 22 50428268 rs142491424 G A 100 PASS ERATE=0.0004;AC=28;AA=G;AN=2184;VT=SNP;RSQ=0.7976;AVGPOST=0.9918;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0135;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.47,-2.35 0|0:0:-0.13,-0.57,-3.52 0|0:0:-0.02,-1.43,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-3.92 22 50428274 rs184768084 G A 100 PASS THETA=0.0009;AVGPOST=0.9977;LDAF=0.0021;AA=G;AN=2184;VT=SNP;RSQ=0.4896;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 0|0:0:-0.05,-0.97,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.85,-5 22 50428382 rs137837 C T 100 PASS AVGPOST=0.9817;AA=C;AN=2184;AC=1116;THETA=0.0005;VT=SNP;ERATE=0.0018;RSQ=0.9666;SNPSOURCE=LOWCOV;LDAF=0.5126;AF=0.51;ASN_AF=0.53;AMR_AF=0.46;AFR_AF=0.53;EUR_AF=0.51 GT:DS:GL 0|1:1:-0.18,-0.47,-2.45 1|0:1:-5,-0.01,-1.7 1|1:2:-2.57,-0.48,-0.18 0|0:0.05:-0.19,-0.47,-2.08 0|1:1:-1.77,-0.01,-3.92 22 50428383 rs6010227 G A 100 PASS AA=G;AN=2184;AC=46;RSQ=0.9661;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;LDAF=0.0217;AVGPOST=0.9982;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.18,-0.47,-2.38 0|0:0:-0.03,-1.25,-5 0|0:0:-0.24,-0.45,-1.18 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.09,-0.72,-4.7 22 50428386 rs150936515 C T 100 PASS AA=T;AN=2184;LDAF=0.0032;THETA=0.0005;RSQ=0.4429;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.07,-0.84,-5 0|0:0:-0.25,-0.45,-1.12 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.05,-0.96,-5 22 50428421 rs188782398 C T 100 PASS AC=30;ERATE=0.0013;AA=C;AN=2184;RSQ=0.5581;THETA=0.0005;AVGPOST=0.9791;LDAF=0.0186;VT=SNP;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.02;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.35,-0.41,-0.78 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.1,-0.68,-4 0|0:0:-0.09,-0.71,-4.7 22 50428427 rs6010228 A G 100 PASS AA=G;AN=2184;VT=SNP;AC=51;THETA=0.0006;ERATE=0.0011;LDAF=0.0269;SNPSOURCE=LOWCOV;RSQ=0.8741;AVGPOST=0.9911;AF=0.02;AMR_AF=0.0028;AFR_AF=0.1;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.11,-0.63,-4.1 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.12,-0.63,-4 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.13,-0.59,-3.55 22 50428466 rs192910565 C T 100 PASS ERATE=0.0021;AA=C;LDAF=0.0325;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9693;AC=54;SNPSOURCE=LOWCOV;RSQ=0.6283;AF=0.02;ASN_AF=0.07;AMR_AF=0.02;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.07,-0.85,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.23,-0.41,-1.59 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50428537 rs57674390 C T 100 PASS AC=62;AA=C;RSQ=0.9285;AN=2184;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.995;LDAF=0.0289;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0.05,-0.96,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50428557 rs185477939 G A 100 PASS AVGPOST=0.9977;LDAF=0.0016;RSQ=0.3407;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 1|0:1:-4.7,-0.02,-1.37 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.11 22 50428581 rs189539187 C T 100 PASS RSQ=0.8967;AA=T;AN=2184;AC=46;LDAF=0.0239;AVGPOST=0.9935;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.25,-0.4,-1.41 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.79,-5 22 50428656 rs5771304 A C 100 PASS THETA=0.0004;AN=2184;AC=272;ERATE=0.0009;VT=SNP;AVGPOST=0.9836;AA=A;LDAF=0.125;RSQ=0.9344;SNPSOURCE=LOWCOV;AF=0.12;ASN_AF=0.13;AMR_AF=0.14;AFR_AF=0.04;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.11,-0.66,-4.4 0|0:0.05:-0.22,-0.42,-1.84 0|0:0.05:-0.21,-0.43,-1.82 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.41,-1.48 22 50428681 rs181500747 G T 100 PASS AC=48;THETA=0.0004;AA=G;AN=2184;RSQ=0.8922;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;LDAF=0.0225;AVGPOST=0.994;AF=0.02;AMR_AF=0.0028;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.19,-0.45,-2.13 22 50428693 rs185193286 A G 100 PASS 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GC G 335 PASS ERATE=0.0004;LDAF=0.0211;AN=2184;AC=46;VT=INDEL;AVGPOST=0.9998;THETA=0.0007;RSQ=0.9955;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:0,-0.6,-9.6 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.9,-14.4 0|0:0:0,-0.3,-4.8 22 50429251 rs115635736 A G 100 PASS AA=G;AN=2184;AC=46;THETA=0.0005;VT=SNP;AVGPOST=0.9998;RSQ=0.9964;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.021;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.67,-5 22 50429332 rs137839 C A 100 PASS ERATE=0.0004;AA=C;LDAF=0.2255;AN=2184;RSQ=0.9799;THETA=0.0005;VT=SNP;AVGPOST=0.9915;SNPSOURCE=LOWCOV;AC=493;AF=0.23;ASN_AF=0.16;AMR_AF=0.27;AFR_AF=0.15;EUR_AF=0.3 GT:DS:GL 0|1:1:-5,-0.1,-0.69 0|0:0:-0.01,-1.87,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.03,-1.18,-5 0|1:1:-1.65,-0.01,-5 22 50429398 . 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rs137840 C T 100 PASS ERATE=0.0004;AVGPOST=0.9963;RSQ=0.9926;AA=C;AN=2184;AC=1121;THETA=0.0005;VT=SNP;LDAF=0.5139;SNPSOURCE=LOWCOV;AF=0.51;ASN_AF=0.52;AMR_AF=0.46;AFR_AF=0.53;EUR_AF=0.52 GT:DS:GL 0|1:1:-4.1,-0.01,-1.49 1|0:1:-5,0,-5 1|1:2:-5,-1.89,-0.01 0|0:0:-0.03,-1.17,-5 0|1:1:-5,-0,-4.1 22 50431625 rs183936138 G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.4022;AVGPOST=0.998;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.12,-5 0|0:0:-0.07,-0.84,-4.4 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.06,-0.9,-5 0|0:0:-0.11,-0.66,-4.7 22 50431740 rs139033730 G A 100 PASS THETA=0.0004;AA=G;AN=2184;LDAF=0.004;AC=6;VT=SNP;RSQ=0.6533;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0007;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.04,-1.06,-4.7 0|0:0:-0.13,-0.6,-3.04 0|0:0:-0.04,-1.03,-5 0|0:0:-0,-2.17,-5 22 50431743 rs118134358 G A 100 PASS 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C A 100 PASS ERATE=0.0004;LDAF=0.0086;AA=C;AC=18;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.9415;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.12,-0.62,-2.39 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.01,-1.67,-5 0|0:0:-0.02,-1.34,-5 22 50433020 rs60332599 A G 100 PASS AVGPOST=0.9817;LDAF=0.1606;AA=G;AN=2184;AC=344;THETA=0.0008;VT=SNP;ERATE=0.001;RSQ=0.9483;SNPSOURCE=LOWCOV;AF=0.16;ASN_AF=0.32;AMR_AF=0.1;AFR_AF=0.01;EUR_AF=0.15 GT:DS:GL 1|0:1:-4,-0.53,-0.15 0|1:1:-1.63,-0.01,-3.24 0|0:0:-0,-2.03,-5 0|1:1:-4.7,-0.02,-1.36 1|0:1:-5,-0,-2.63 22 50433135 rs186639418 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AC=10;THETA=0.0011;RSQ=0.8136;SNPSOURCE=LOWCOV;AVGPOST=0.9978;LDAF=0.0051;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.2,-0.44,-2.03 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.04,-1.09,-5 22 50433190 rs78587085 C A 100 PASS AA=C;AN=2184;RSQ=0.9055;LDAF=0.0093;AC=20;THETA=0.0005;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.12,-0.61,-3.08 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.04,-1.07,-5 22 50433239 rs150917337 C A 100 PASS ERATE=0.0004;RSQ=0.945;AA=C;AC=18;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0006;LDAF=0.0085;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.01,-1.51,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 22 50433334 rs139763617 G C 100 PASS ERATE=0.0005;AA=g;AN=2184;RSQ=0.8504;VT=SNP;AC=9;LDAF=0.0049;SNPSOURCE=LOWCOV;AVGPOST=0.9984;THETA=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 22 50433460 rs191940619 G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=9;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.9154;ERATE=0.0003;LDAF=0.0045;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.13,-0.6,-2.17 0|0:0:-0.02,-1.35,-5 0|0:0:-0.03,-1.17,-5 22 50433546 rs181056184 G A 100 PASS THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6867;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.06,-0.88,-5 22 50434346 rs185491667 C A 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.6353;LDAF=0.0015;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.28,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.19,-0.46,-2.16 22 50434350 rs190300288 G C 100 PASS ERATE=0.0004;LDAF=0.0021;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;RSQ=0.5758;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.28,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.13,-0.6,-2.19 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.19,-0.46,-2.15 22 50434481 rs182180930 G T 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0015;VT=SNP;THETA=0.0006;RSQ=0.4082;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9978;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0.03,-1.15,-5 0|0:0:-0.11,-0.63,-4 22 50434619 rs137843 G C 100 PASS AA=G;AN=2184;AC=877;THETA=0.0008;AVGPOST=0.9894;VT=SNP;LDAF=0.402;RSQ=0.9816;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.4;ASN_AF=0.38;AMR_AF=0.33;AFR_AF=0.55;EUR_AF=0.35 GT:DS:GL 0|1:1:-5,-0,-2.91 1|0:1:-1.8,-0.02,-1.61 1|1:2:-2.8,-0.5,-0.17 0|0:0:-0.2,-0.44,-2.17 0|1:1:-0.18,-0.47,-3.06 22 50434707 rs188009980 G A 100 PASS AC=7;ERATE=0.0004;LDAF=0.0036;AA=G;AN=2184;VT=SNP;RSQ=0.7982;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9982;AF=0.0032;ASN_AF=0.0017;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.05,-1,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.18,-0.46,-2.98 22 50434735 rs117616931 G A 100 PASS ERATE=0.0004;AVGPOST=0.9966;RSQ=0.8356;AA=G;AN=2184;VT=SNP;LDAF=0.0072;THETA=0.0028;AC=15;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.02;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0.05:-0.12,-0.62,-3.24 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.19,-0.46,-2.15 22 50435086 rs4838818 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9823;VT=SNP;AVGPOST=0.9948;SNPSOURCE=LOWCOV;LDAF=0.1438;AC=312;THETA=0.0043;AF=0.14;ASN_AF=0.14;AMR_AF=0.14;AFR_AF=0.11;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.03,-1.13,-5 22 50435161 rs146189883 C T 100 PASS ERATE=0.0004;RSQ=0.7896;LDAF=0.0016;AN=2184;VT=SNP;AVGPOST=0.9993;AA=c;SNPSOURCE=LOWCOV;THETA=0.0013;AC=3;AF=0.0014;ASN_AF=0.0017;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.96,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.36,-0.44,-0.7 0|0:0:-0.06,-0.88,-5 0|0:0:-0.27,-0.38,-1.34 22 50435287 rs191863819 G A 100 PASS AA=G;AN=2184;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AC=2;THETA=0.0003;RSQ=0.58;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.05,-0.98,-4.1 0|0:0:-0,-2.06,-5 0|0:0:-0.06,-0.92,-5 22 50435355 rs184103308 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9101;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;ASN_AF=0.0017;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.06,-0.91,-5 22 50435448 . G C 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.05,-1.01,-5 22 50435480 rs5771069 A G 100 PASS THETA=0.0004;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9976;LDAF=0.5552;ERATE=0.0033;AC=1213;AF=0.56;ASN_AF=0.54;AMR_AF=0.49;AFR_AF=0.66;EUR_AF=0.53 GT:DS:GL 0|1:1:-1.46,-0.02,-5 1|0:1:-5,0,-5 1|1:2:-5,-5,0 0|0:0:-0,-4.4,-5 0|1:1:-5,0,-5 22 50435599 rs188202550 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.7993;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;LDAF=0.0017;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.93,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.54,-5 0|0:0:-0.01,-1.58,-5 22 50435723 . G A 100 PASS ERATE=0.0004;RSQ=0.9336;AA=G;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=2;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.88,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.56,-5 22 50435733 . C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;RSQ=0.8457;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.38,-5 22 50435764 . C T 100 PASS LDAF=0.0004;AA=C;AN=2184;RSQ=0.8551;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.8,-5 22 50435784 rs142209556 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0006;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.94,-5 22 50435827 rs149914294 C T 100 PASS AA=C;AC=18;LDAF=0.0083;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.0003;RSQ=0.9947;AVGPOST=0.9999;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.61,-5 22 50435929 rs144997194 G C 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0017;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.38,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.13,-5 22 50435975 rs184714162 C T 100 PASS AC=12;ERATE=0.0005;AVGPOST=0.9983;AN=2184;THETA=0.0005;LDAF=0.0062;VT=SNP;AA=c;SNPSOURCE=LOWCOV;RSQ=0.8896;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-3.66,-5 0|0:0.05:-0.13,-0.59,-2.23 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 22 50436000 rs13054006 G C 100 PASS THETA=0.0002;LDAF=0.0092;AA=G;AN=2184;AC=20;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;RSQ=0.9673;ERATE=0.0003;AF=0.01;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0:-0.07,-0.82,-3.47 0|0:0:-0,-2,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50436052 rs187122962 A G 100 PASS AVGPOST=1;LDAF=0.0009;AN=2184;VT=SNP;AA=A;RSQ=1;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436211 . T C 100 PASS AVGPOST=1;THETA=0.0004;AA=T;AN=2184;ERATE=0.0009;LDAF=0.0018;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=4;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436212 rs191888981 G T 100 PASS RSQ=0.992;AVGPOST=1;LDAF=0.0027;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=6;VT=SNP;THETA=0.0019;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436215 . A G 100 PASS ERATE=0.0004;AA=g;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.9452;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436376 rs113614564 C T 100 PASS ERATE=0.0004;AVGPOST=0.9945;AA=C;LDAF=0.0071;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.708;AC=11;AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.74,-5 0|0:0:-0.12,-0.62,-2.39 0|0:0:-0.13,-0.6,-2.18 0|0:0:-0,-2.36,-5 0|0:0:-0,-4.22,-5 22 50436488 rs142430606 G A 100 PASS AC=18;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9786;LDAF=0.0085;ERATE=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0.03,-1.21,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436546 rs189547612 C T 100 PASS AA=C;THETA=0.0004;ERATE=0.0076;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=14;LDAF=0.0111;RSQ=0.5808;AVGPOST=0.9876;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436553 . A C 100 PASS AN=2184;RSQ=0.9124;AC=6;THETA=0.0005;VT=SNP;AA=A;ERATE=0.0011;LDAF=0.0028;SNPSOURCE=EXOME;AVGPOST=0.9995;AF=0.0027;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.22,-0.46,-1.25 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436571 . G A 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.23,-5 0|0:0:-0.08,-0.79,-3.19 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436604 . G C 100 PASS ERATE=0.0004;RSQ=0.9336;THETA=0.0002;AA=G;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;AC=2;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.13,-0.6,-2.15 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436756 . G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.871;LDAF=0.0011;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50436858 rs141452231 T C 100 PASS THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7193;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.36,-5 0|0:0:-0.04,-1.01,-4.4 0|0:0:-0.05,-0.97,-4.1 0|0:0:-0,-3.19,-5 0|0:0:-0,-2.28,-5 22 50436884 rs115244935 C A 100 PASS RSQ=0.9759;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0096;AC=21;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.22,-5 0|0:0:-0.04,-1.01,-4.4 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-2.35,-5 0|0:0:-0,-2.1,-5 22 50437104 rs181970108 G A 100 PASS THETA=0.0002;AA=g;AN=2184;RSQ=0.7875;VT=SNP;AVGPOST=0.9993;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.13,-0.59,-3.66 0|0:0:-0.06,-0.9,-4.7 0|0:0:-0.08,-0.76,-4.7 0|0:0:-0.02,-1.45,-5 0|0:0:-0.24,-0.41,-1.48 22 50437107 rs185725181 A T 100 PASS LDAF=0.0346;RSQ=0.5547;ERATE=0.0149;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9634;SNPSOURCE=LOWCOV;AC=50;AA=N;AF=0.02;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.02 GT:DS:GL 0|0:0.05:-0.13,-0.59,-3.7 0|0:0:-0.04,-1.03,-5 1|0:1:-5,-0.66,-0.11 0|0:0:-0.01,-1.5,-5 0|0:0:-0.24,-0.41,-1.48 22 50437175 rs188767611 C T 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.6934;AVGPOST=0.9988;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.62,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-2.63,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.02,-1.31,-5 22 50437183 rs181553190 C T 100 PASS ERATE=0.0004;RSQ=0.7815;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;THETA=0.0003;AVGPOST=0.9992;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.49,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.05,-0.98,-5 22 50437202 rs4838836 C G 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9916;VT=SNP;LDAF=0.3506;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AC=765;THETA=0.0007;AF=0.35;ASN_AF=0.35;AMR_AF=0.3;AFR_AF=0.41;EUR_AF=0.33 GT:DS:GL 0|1:1:-5,-0,-2.31 1|0:1:-5,-0.84,-0.07 0|0:0:-0.04,-1.03,-5 0|0:0:-0,-2.22,-5 0|1:1:-2.01,-0,-4.4 22 50437255 rs138321987 C T 100 PASS AC=12;THETA=0.0004;AN=2184;LDAF=0.009;VT=SNP;AA=c;RSQ=0.6257;SNPSOURCE=LOWCOV;ERATE=0.0028;AVGPOST=0.991;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.26,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0,-2.34,-5 0|0:0:-0.02,-1.42,-5 22 50437256 rs186034048 G A 100 PASS THETA=0.0009;ERATE=0.0005;RSQ=0.527;AA=g;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.5,-5 0|0:0:-0.01,-1.87,-5 0|0:0:-0.01,-1.58,-5 0|0:0:-0,-2.42,-5 0|0:0:-0.01,-1.48,-5 22 50437290 rs140981313 G A 100 PASS AA=G;AN=2184;RSQ=0.7425;THETA=0.0008;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.11,-0.64,-4 22 50437338 rs188491995 G A 100 PASS THETA=0.0009;ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7282;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.45,-5 22 50437340 rs181261625 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.5882;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.91,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.74,-5 22 50437372 rs4838838 G A 100 PASS RSQ=0.992;LDAF=0.3504;AA=G;AN=2184;AC=766;VT=SNP;THETA=0.0006;AVGPOST=0.9956;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.35;ASN_AF=0.35;AMR_AF=0.3;AFR_AF=0.41;EUR_AF=0.34 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0,-2.52 0|0:0:-0.02,-1.4,-5 0|0:0:-0.03,-1.2,-5 0|1:1:-5,-0,-4.1 22 50437418 rs185807812 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;ERATE=0.001;LDAF=0.0029;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9984;RSQ=0.7629;AF=0.0023;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.08,-0.79,-4.1 0|0:0:-0.06,-0.87,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-2.13,-5 22 50437661 rs13056254 A G 100 PASS ERATE=0.0004;RSQ=0.9668;AN=2184;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AC=63;LDAF=0.0293;AF=0.03;AMR_AF=0.05;AFR_AF=0.002;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0.04,-1.02,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50437711 . G T 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.51,-5 0|0:0:-0,-2.37,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50437747 . G C 100 PASS ERATE=0.0005;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;RSQ=0.7318;AC=1;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.23,-5 0|0:0:-0.02,-1.42,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50437784 . G C 100 PASS AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.7354;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.11,-0.64,-2.52 0|0:0:-0.22,-0.46,-1.27 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50437814 . T A 100 PASS ERATE=0.0004;THETA=0.0002;AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0011;RSQ=0.8758;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.04,-1.01,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50437830 . G A 100 PASS LDAF=0.0016;AA=G;AN=2184;VT=SNP;RSQ=0.7861;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;THETA=0.0003;AVGPOST=0.9992;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.02,-1.26,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50437841 . A T 100 PASS AN=2184;THETA=0.0005;VT=SNP;AA=A;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.01,-1.93,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50437949 rs191055360 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0119;AVGPOST=0.9989;THETA=0.0017;ERATE=0.0003;AC=25;RSQ=0.9591;AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-2.49,-5 0|0:0:-0,-2.78,-5 22 50437976 rs7290572 G T 100 PASS LDAF=0.3577;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9849;VT=SNP;ERATE=0.0018;THETA=0.002;AC=781;RSQ=0.9724;AF=0.36;ASN_AF=0.35;AMR_AF=0.3;AFR_AF=0.43;EUR_AF=0.34 GT:DS:GL 0|1:1:-5,-0.77,-0.08 1|0:1:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.09,-0.71,-5 0|1:1:-5,-0.69,-0.1 22 50438117 rs183640576 T C 100 PASS LDAF=0.1475;THETA=0.0004;AN=2184;VT=SNP;AA=c;RSQ=0.3427;SNPSOURCE=LOWCOV;AC=192;ERATE=0.0084;AVGPOST=0.7947;AF=0.09;ASN_AF=0.11;AMR_AF=0.09;AFR_AF=0.08;EUR_AF=0.08 GT:DS:GL 0|0:0.5:-0.48,-0.48,-0.48 1|1:1.1:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|1:0.6:-0.48,-0.48,-0.48 1|0:0.7:-0.48,-0.48,-0.48 22 50438124 rs187374922 T C 100 PASS AC=297;THETA=0.0002;AN=2184;RSQ=0.2972;AVGPOST=0.7015;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.2252;ERATE=0.0148;AA=t;AF=0.14;ASN_AF=0.21;AMR_AF=0.09;AFR_AF=0.15;EUR_AF=0.1 GT:DS:GL 0|0:0.4:-0.48,-0.48,-0.48 0|0:0.45:-0.48,-0.48,-0.48 1|0:0.85:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 22 50438279 . T C 100 PASS AC=17;RSQ=0.8842;AN=2184;VT=SNP;AVGPOST=0.9976;SNPSOURCE=EXOME;LDAF=0.0085;ERATE=0.0006;AA=t;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.15,-0.54,-3.34 0|0:0:-0.08,-0.79,-3.36 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.18,-0.48,-2.17 0|0:0:-0.11,-0.64,-4 22 50438379 rs150229652 A C 100 PASS ERATE=0.0005;AVGPOST=0.9939;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0054;AC=6;VT=SNP;RSQ=0.5554;AA=a;THETA=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.2,-0.45,-2.07 22 50438594 rs59992738 C T 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=c;AC=81;AVGPOST=0.9956;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9558;LDAF=0.0372;AF=0.04;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.1;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.05,-0.99,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.06,-0.89,-5 22 50438605 rs138890091 C A 100 PASS LDAF=0.0033;THETA=0.0004;AN=2184;AVGPOST=0.9972;VT=SNP;AA=c;AC=5;RSQ=0.6617;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.2,-0.47,-1.45 0|0:0:-0.12,-0.61,-3.08 0|0:0:-0.03,-1.14,-5 0|0:0:-0.03,-1.13,-5 22 50438768 rs73445983 G A 100 PASS ERATE=0.0005;LDAF=0.0027;AA=g;AN=2184;AVGPOST=0.999;VT=SNP;AC=5;SNPSOURCE=LOWCOV;RSQ=0.8475;THETA=0.0003;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.22,-0.46,-1.25 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 22 50438801 rs146369374 A G 100 PASS THETA=0.0023;AN=2184;RSQ=0.5142;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AA=a;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.01,-1.76,-5 0|0:0.1:-0.02,-1.26,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50438918 . T C 100 PASS AVGPOST=1;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AA=t;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.22,-5 0|0:0:-0.01,-1.87,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50439111 rs138462927 C T 100 PASS AN=2184;AVGPOST=0.9996;VT=SNP;AA=c;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;RSQ=0.9239;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.23,-5 0|0:0:-0.03,-1.23,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50439121 rs116969132 G A 100 PASS ERATE=0.0004;THETA=0.0015;LDAF=0.0071;AA=g;AN=2184;VT=SNP;AC=15;SNPSOURCE=LOWCOV;AVGPOST=0.9995;RSQ=0.9696;AF=0.01;ASN_AF=0.03 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.22,-0.46,-1.25 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50439194 rs9617090 C T 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.308;RSQ=0.9935;VT=SNP;AA=c;THETA=0.0006;AVGPOST=0.9964;AC=672;AF=0.31;ASN_AF=0.35;AMR_AF=0.29;AFR_AF=0.13;EUR_AF=0.4 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-1.9,-0.02,-1.46 0|0:0:-0.13,-0.61,-2.21 1|1:2:-5,-3.38,-0 1|0:1:-5,0,-5 22 50439203 rs143091006 G A 100 PASS ERATE=0.0005;LDAF=0.0021;AVGPOST=0.9994;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8632;VT=SNP;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.18,-5 0|0:0:-0.13,-0.61,-2.34 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.22,-5 22 50439240 rs149302070 C T 100 PASS ERATE=0.0005;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.5251;AA=c;AVGPOST=0.9988;LDAF=0.0011;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.13,-0.6,-2.21 0|0:0:0,-5,-5 0|0:0:-0,-2.53,-5 22 50439284 rs182975550 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.6265;VT=SNP;AVGPOST=0.9993;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.09,-5 0|0:0:-0.06,-0.86,-4.4 0|0:0:-0.13,-0.6,-2.99 0|0:0:-0,-3.74,-5 0|0:0:-0.01,-1.93,-5 22 50439311 . C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;THETA=0.0004;AN=2184;VT=SNP;AA=c;RSQ=0.5894;SNPSOURCE=EXOME;AC=1;LDAF=0.0012;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0,-2.65,-5 0|0:0:-0.03,-1.13,-5 22 50439383 rs187606663 C T 100 PASS THETA=0.0002;AN=2184;LDAF=0.0015;VT=SNP;AA=c;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;RSQ=0.9282;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.11,-5 0|0:0.05:-0.17,-0.51,-1.75 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.01,-1.67,-5 22 50439424 rs191686029 C T 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;AA=c;LDAF=0.0007;RSQ=0.7186;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0,-2.94,-5 22 50439430 rs137845 A G 100 PASS THETA=0.0009;ERATE=0.0004;AN=2184;RSQ=0.9977;VT=SNP;LDAF=0.5547;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1212;AA=a;AF=0.55;ASN_AF=0.54;AMR_AF=0.48;AFR_AF=0.67;EUR_AF=0.53 GT:DS:GL 0|1:1:-4.7,-0,-5 1|0:1:-5,0,-5 1|1:2:-5,-1.77,-0.01 0|0:0:-0.06,-0.91,-5 0|1:1:-5,0,-5 22 50439496 . G A 100 PASS AA=g;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.14,-0.55,-5 0|0:0:-0,-2.15,-5 0|0:0:-0,-3.07,-5 0|0:0:-0,-3.28,-5 22 50439626 rs9617098 G A 100 PASS ERATE=0.0005;AC=30;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9857;AVGPOST=0.9996;VT=SNP;LDAF=0.0139;AF=0.01;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.11,-0.66,-4.7 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-1.98,-5 22 50439631 . G A 100 PASS AA=g;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.04,-1.11,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.7,-5 0|0:0:-0,-1.98,-5 22 50439637 rs183335849 G A 100 PASS AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.7,-5 0|0:0:-0,-1.98,-5 22 50439706 rs139138549 G A 100 PASS AA=g;THETA=0.0004;AN=2184;ERATE=0.0009;AC=6;VT=SNP;AVGPOST=0.9991;RSQ=0.8737;LDAF=0.003;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.36,-5 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 0|0:0.1:-0.17,-0.5,-2.48 0|0:0:-0.01,-1.82,-5 22 50439717 rs7291439 G A 100 PASS LDAF=0.0027;AA=g;AN=2184;AC=6;VT=SNP;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9841;AVGPOST=0.9999;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.16,-0.5,-2.53 0|0:0:-0.02,-1.36,-5 22 50439798 rs5771184 C G 100 PASS ERATE=0.0005;AVGPOST=0.9977;AN=2184;AC=424;RSQ=0.9939;LDAF=0.1946;VT=SNP;AA=c;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.19;ASN_AF=0.17;AMR_AF=0.17;AFR_AF=0.25;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.07,-0.84,-3.62 1|1:2:-2.97,-0.48,-0.18 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.03,-1.15,-5 22 50439881 rs137847 T C 100 PASS ERATE=0.0004;AC=1959;AN=2184;THETA=0.0005;AVGPOST=0.9942;VT=SNP;AA=c;RSQ=0.976;SNPSOURCE=LOWCOV;LDAF=0.896;AF=0.9;ASN_AF=0.88;AMR_AF=0.8;AFR_AF=0.93;EUR_AF=0.93 GT:DS:GL 1|1:2:-3,-0.46,-0.19 1|1:2:-0.48,-0.48,-0.48 1|1:2:-2.29,-0.43,-0.2 1|1:2:-5,-0.64,-0.11 1|1:2:-5,-0.7,-0.1 22 50439936 rs5771186 C A 100 PASS ERATE=0.0004;AA=C;LDAF=0.1663;AN=2184;AC=363;VT=SNP;RSQ=0.9961;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0043;AF=0.17;ASN_AF=0.17;AMR_AF=0.16;AFR_AF=0.13;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.16,-0.51,-2.87 0|0:0:-0.12,-0.62,-3.24 1|1:2:-2.51,-0.16,-0.52 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.18,-0.47,-3.06 22 50440104 rs116816299 C T 100 PASS RSQ=0.3859;LDAF=0.0021;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9968;ERATE=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.06,-0.88,-5 0|0:0:-0.18,-0.47,-3.09 22 50440135 rs150524418 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=8;AVGPOST=0.9981;RSQ=0.8368;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0045;THETA=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.35,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.09,-0.73,-4.4 0|0:0:-0.06,-0.9,-5 22 50440296 rs137848 T C 100 PASS AA=C;AC=1218;AN=2184;RSQ=0.9726;VT=SNP;ERATE=0.0062;LDAF=0.557;AVGPOST=0.9833;SNPSOURCE=LOWCOV;THETA=0.0029;AF=0.56;ASN_AF=0.54;AMR_AF=0.48;AFR_AF=0.7;EUR_AF=0.52 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-0.18,-0.47,-2.32 1|1:1.95:-4.7,-0.2,-0.43 0|0:0:-0,-2.26,-5 0|1:1:-2.01,-0,-3.92 22 50440432 rs139521624 G T 100 PASS ERATE=0.0005;RSQ=0.5951;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.03,-1.17,-5 22 50440439 rs149709365 G T 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.8006;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;LDAF=0.0017;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.03,-1.13,-5 22 50440536 rs147829212 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.8541;AVGPOST=0.9997;LDAF=0.001;VT=SNP;THETA=0.0057;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-1.97,-5 22 50440651 rs9617104 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9899;AC=174;RSQ=0.9475;LDAF=0.0811;AF=0.08;ASN_AF=0.1;AMR_AF=0.1;AFR_AF=0.01;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.35,-5 1|1:2:-5,-1.31,-0.02 0|0:0:-0,-2.04,-5 0|0:0:-0.07,-0.85,-5 22 50440665 rs141413790 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;AC=16;THETA=0.0005;VT=SNP;RSQ=0.9794;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0075;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.13,-0.6,-2.21 0|0:0:-0,-2.25,-5 0|0:0:-0.12,-0.63,-3.92 22 50440839 rs145314207 C T 100 PASS ERATE=0.0004;LDAF=0.0009;AA=C;AN=2184;THETA=0.0008;AVGPOST=0.999;VT=SNP;RSQ=0.5516;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0,-3.09,-5 0|0:0:-0,-2.82,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.07,-0.84,-5 22 50440881 rs73445991 C T 100 PASS LDAF=0.0021;AA=C;AN=2184;RSQ=0.8181;VT=SNP;THETA=0.0067;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.72,-5 0|0:0:-0,-2.46,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.01,-1.55,-5 22 50441115 rs187464245 G T 100 PASS AA=G;AN=2184;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;RSQ=0.6209;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.22,-0.42,-1.8 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.1,-0.68,-4 0|0:0:-0.2,-0.44,-2.66 22 50441151 rs192720151 T C 100 PASS RSQ=0.5934;THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9972;VT=SNP;LDAF=0.003;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.22,-0.42,-1.79 0|0:0:-0.2,-0.45,-2.14 0|0:0:-0.06,-0.86,-5 0|0:0:-0.11,-0.63,-5 22 50441167 rs5771081 G A 100 PASS ERATE=0.0036;LDAF=0.2048;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=453;RSQ=0.9433;SNPSOURCE=LOWCOV;AVGPOST=0.9781;AF=0.21;ASN_AF=0.17;AMR_AF=0.19;AFR_AF=0.28;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.16,-0.51,-2.81 0|1:1.15:-0.17,-0.51,-2.14 0|0:0:-0.07,-0.86,-5 0|0:0:-0.05,-0.93,-5 22 50441298 rs5771082 G C 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;AC=382;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9968;LDAF=0.1753;AF=0.17;ASN_AF=0.17;AMR_AF=0.17;AFR_AF=0.15;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.01,-1.56,-5 1|1:2:-5,-2,-0 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.6,-5 22 50441350 rs143239417 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=16;VT=SNP;RSQ=0.9526;THETA=0.0006;LDAF=0.0074;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.03,-1.12,-5 22 50441521 rs13056642 C T 100 PASS ERATE=0.0005;RSQ=0.9931;AA=C;AVGPOST=0.9966;THETA=0.0004;LDAF=0.3032;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=662;AF=0.3;ASN_AF=0.35;AMR_AF=0.26;AFR_AF=0.26;EUR_AF=0.31 GT:DS:GL 0|1:1:-5,-0,-3.27 1|0:1:-5,-0.08,-0.8 0|0:0:-0.01,-1.7,-5 0|0:0:-0.03,-1.12,-5 0|1:1:-5,0,-5 22 50441550 rs114068801 C T 100 PASS AA=C;THETA=0.0004;RSQ=0.9764;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=27;ERATE=0.0003;LDAF=0.0128;AVGPOST=0.9992;AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-3.55,-5 22 50441626 rs79142910 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=32;LDAF=0.0157;AVGPOST=0.9973;SNPSOURCE=LOWCOV;RSQ=0.9369;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.07,-0.8,-4.7 0|0:0:-0.01,-1.7,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-2.76,-5 22 50441673 rs11101950 G A 100 PASS AA=G;AN=2184;AC=382;VT=SNP;THETA=0.0017;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0007;RSQ=0.9932;LDAF=0.1753;AF=0.17;ASN_AF=0.17;AMR_AF=0.17;AFR_AF=0.15;EUR_AF=0.19 GT:DS:GL 0|0:0.05:-0.01,-1.78,-5 0|0:0:-0.01,-1.51,-5 1|1:1.95:-5,-0.68,-0.1 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.06,-0.88,-5 22 50441944 rs184550332 A G 100 PASS ERATE=0.0005;AVGPOST=0.9946;AN=2184;THETA=0.0005;VT=SNP;AA=A;AC=44;SNPSOURCE=LOWCOV;RSQ=0.8971;LDAF=0.021;AF=0.02;ASN_AF=0.06;AMR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.64,-3.92 0|0:0:-0.48,-0.48,-0.48 22 50441985 rs5771192 A C 100 PASS AVGPOST=0.9868;AA=C;AN=2184;RSQ=0.9789;LDAF=0.5387;VT=SNP;ERATE=0.0017;THETA=0.0006;AC=1178;SNPSOURCE=LOWCOV;AF=0.54;ASN_AF=0.54;AMR_AF=0.48;AFR_AF=0.61;EUR_AF=0.52 GT:DS:GL 0|1:1:-4.7,-0.01,-1.84 1|0:1:-4.22,-0,-3.8 1|1:2:-1.1,-0.21,-0.51 0|0:0:-0.11,-0.65,-4.4 0|1:1:-0.11,-0.64,-4.1 22 50441993 rs148316130 T C 100 PASS LDAF=0.0066;AA=T;AN=2184;AC=13;VT=SNP;ERATE=0.001;RSQ=0.7435;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.996;AF=0.01;ASN_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.12,-0.62,-3.17 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.11,-0.64,-4 22 50441994 rs189297193 G A 100 PASS THETA=0.0002;AVGPOST=0.9994;LDAF=0.0016;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8774;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.12,-0.62,-3.15 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.11,-0.64,-4.1 22 50442439 rs192649403 C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0007;RSQ=0.6721;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-3.74,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0,-2.33,-5 22 50442480 rs140510207 T C 100 PASS ERATE=0.0005;LDAF=0.0009;THETA=0.0022;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5756;AVGPOST=0.9992;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.08,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.1,-5 22 50442493 rs184268574 T C 100 PASS AC=7;THETA=0.0009;ERATE=0.0005;AA=T;AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0034;RSQ=0.8701;SNPSOURCE=LOWCOV;AF=0.0032;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.04,-1.07,-5 22 50442517 . G GT 119 PASS AVGPOST=0.99;AC=28;AN=2184;ERATE=0.0009;VT=INDEL;THETA=0.0006;LDAF=0.0153;RSQ=0.7358;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-0.6,-5.5 1|0:0.7:0,-0.3,-2.2 0|0:0:0,-1.2,-11 0|0:0:0,-0.6,-5.5 0|0:0:0,0,0 22 50442628 rs137849 C T 100 PASS AC=342;ERATE=0.0004;LDAF=0.1563;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;RSQ=0.9903;AF=0.16;ASN_AF=0.21;AMR_AF=0.13;AFR_AF=0.11;EUR_AF=0.16 GT:DS:GL 0|1:1:-5,-1.16,-0.03 1|0:1:-5,-0,-4.7 0|0:0:-0.08,-0.75,-5 0|0:0:-0.48,-0.48,-0.48 0|1:1:-0.19,-0.45,-2.15 22 50442674 rs6537633 A G 100 PASS ERATE=0.0004;AVGPOST=0.9985;THETA=0.0004;AN=2184;RSQ=0.9602;VT=SNP;AA=A;LDAF=0.0147;AC=32;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.12,-0.62,-3.18 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.48,-0.48,-0.48 22 50442761 rs188992476 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;RSQ=0.5062;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.08,-0.79,-5 22 50442869 rs137850 G A 100 PASS ERATE=0.0004;AA=g;THETA=0.0004;AN=2184;AC=341;RSQ=0.993;LDAF=0.1559;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.16;ASN_AF=0.21;AMR_AF=0.13;AFR_AF=0.11;EUR_AF=0.15 GT:DS:GL 0|1:1:-5,-0,-4.7 1|0:1:-5,0,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.05,-0.94,-5 0|1:1:-5,-0,-2.44 22 50443038 MERGED_DEL_2_107112 CTAGCACTTTGGGAGGCCGAGGAGGGCAGATCACCAGAGGTCAGGGGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTTGCCAGGTGTGGTGGTACACACCTGTAGTCCTAGCTACTCGGGAGGCTGAGGTAGGAGAGGAAGGGAGGCAGAGGTTGCAGTGAGAAGAGATCATGCCACTGCACTCCAGCCTGGATGACAGAGCAAGACTCCATCTCAAAAAAAAAAAGACAACCTCCTTTATGCAAGAAATGAGAAATCTGCATCTTTTGACCCTTTCTAGAAAAAAGACAAAGACTTATTCCAGGCAACCAAGAAAGAATCAAAACCAGAAAGTAAAAAAAAAAAAAAAAAAAAAAGGTGAAGCCACGGAGGAGAAGGACTCACGGTGAGCAAGGAAAATGAGGACATATACAGAGTTAGTGAAACGGGCGCAGGAGGAGAAGCTGCTCATTGTGAAATAAAATGTATAAAAATAAGAACAGGATCTTGTCCCAACTAAGCTGACAAAATGAAGAGGAGGCTGTGTAGAAGGAAGGGTGAGTAAAGCAGAAACACACAAGATTAGTGTGGTACAAAACAGAATTCATTGTTACTGTGTGGAAAAAACTGTGAAACTACAATTCATCATAAACACTTAGCAATAAATATGTTTTGCCTTATTCAAAATAAGGCATAAAAATAATATCCACAGAGTCTTACTGAAAAAACGCCTAACAGATGTGCTTGCTTCAGGAAGGAGAAGGGAGCTCAACAGGAACAAGTGGGTTACAGAAAGGAGCAGCGAGGAGCAGGGAATGGGAAAACACGATGGGGAATTGGGAATTCAAGCTGGTGTTGACAGAGGAGGAGGCTGAGGACAACTCTGTGTGTTTAAAAATACCTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGTCGAGGCGGGCGGATCACTTCGGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTGCTAAAAATACAATGATTAGCTGGGCATGGTGCTGCTGGGCGCCTGTAATTCCAGCTACTTGAGAGGCTAAGGCAGGAGAATCCCTTGAATCCGGGAGGCGGAAGTTGCAGTGAGCCGAGATTGCGCCACTGTACTCCAGCCTGGGCAACAAAGCGAGACCTTGTCCCCCTACCCCCCAGAAAATAAAAAAATAAAATATACCAAAAATAAAAATAAAAACACCCTGGGACTACACTTCCCTCATATGGGAGACCCGGCCATTTGCACCAACTCAACTGCTGAAAAGTACCAATTGGGCTGGAGAAAAAAACATATGTTTTTTTAAAAACCTTCCTAGAAACGTAGGAGAGCTGCGAAAATAATCAGGATGGGGGTGCTGAGGAAAGCAGGGCGTAGGAGGTTGCTTTACAGGGGTGGAGGATGGAGGGAACGTTTCCAACCCAGTGGGAGCTGAGGGCTTTGTGGGGAGGCCCCAGCACATGGTGAGGAAGAACTTCCCCACGTTGAGCTAGGCCTTGACCTGGGTTAGCCAGAGCTGGACCAACCCTCTCCCCAAAGCCCAGGCACTGTTCCAGACTCGCTGAGTGGAGGAGCAGGGAGAGAAAGCTCCCCCAAAGCCCACAACCCAGTACAGATTCACAGCCCAGGTTGGGCCCACCAGGAAGACCCATGAAACCTCAGTCTGTGAATCTGGTTTAAACGGCCCCGACAGTCAGACACTGCTCCTGGCACCACCCAGGAGCAACAGGAATCCAGCCTCCGGGAGGCCCTGAGTCCTGGGACGTTGAGCCGCTGAAGGTAAACAAGCACACCAGGAAGCAGAGAGCCCAGAGTGACGCTGTGGAGAGGGTGGGCCCAGGTGTCCTCCAGTAACAAGCCACAGGCCAAGCAGGCGAAAAAACAGGCTTGAAAATACAGGCAGCAGGAAAGGCTGTGATGAGGGACCAGGCACACTTGAGAGAAATGGAATTCCTAGAAACAAAACCACCACGACAGAATTAAAATACAACGGGTGATTTTTAAGAGCAGATTGGGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACTCTGTCTCTACTAAAAATACACAAAAAATTACCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGTGAATTGCTTGAGCCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACTTCAGCGTGGGCAAAACAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAGGGAGGGGATGTTAAACTAAAAAACCTATATGACAATTTTCATAGATGCAGAAATTTTTCATAAAATTCAATACCTATTCATGATGAAAGAATGTTTAGCAAACTAGGAAAAGAAAGGCACCTCTTTGTCTAGATCAGGGACATCTAGTGCAAACATCCAATAAACTTAATACTGAACAGTAAACCTTTGGAATCATTACTATTAATATCAGGACTCAAACAGGAATTCCCTCATTCACCATTGCCCTGGAGAGCTGAGCCAATTCCACAAGATCCGCCCCCTCCACCCAATGCGTAGGTTTATGAGCTGTCATTAGCTGCAGAATATGTGATCATCATTAAAAAAGGAGACTCCATAGGAAATCTATTAGAAATACTAAAGAGCTTTATCTTTTATTTGTTTATTTATGTTTTTATGAGGCAGAGTCTCACTCCATTGCCCAGGCTGGAGTGCAATGGTGCAATCTTGGCTCACTACAACCTCTGCCTCCTGGGTTCGAGTGATTCTCTTGCCTCAGCCTCCCAGGTAGCTGGGATTACAGGCAAGTGCCACCACACTCAGTTAATTTTTTTGGGGGGGGGATTCTTAGTACAGACAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACGTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCATCAGCCATGCTTTGCATTTGTTGTTTGTTTGTTACTATAGTCCGCTTTGTGAATTTGCATGTCATCCTTGCGCAGGGGCCAAGCTGATCTAATCTCCTCCCTTAAGCTTAGAGGTCCTTGAGGTGAAGAAACATTTAAGTAAAGTTTAGCCATCTATTTTTCTGTTAAATTCAAGTAAAAATAAAATAGTTTAAATGACATAAGGTAATTTCATTTCTATAAAATAATTTTTATCTGTTTATCCTGCAAATATCTGTATATTTGGCTACACAAATGTCTAGAACAGGCCAGGCATGGTGGCTCAAGTTCACAATCCC CG . . HOMSEQ=TA;HOMLEN=2;AVGPOST=0.9939;END=50446417;THETA=0.0002;RSQ=0.7771;AN=2184;CIEND=-68,85;ERATE=0.0034;AC=20;LDAF=0.0109;CIPOS=-58,99;VT=SV;SVTYPE=DEL;SVLEN=-3378;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-9.08,-125.33 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:-0.02,-1.28,-30.69 0|0:0:0,0,0 22 50443039 rs181121019 T G 100 PASS AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;AVGPOST=0.9984;LDAF=0.0051;THETA=0.0003;RSQ=0.8877;AF=0.01;ASN_AF=0.01;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-2.99,-5 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.48,-0.48,-0.48 22 50443134 rs186555450 A T 100 PASS AN=2184;AVGPOST=0.9967;VT=SNP;ERATE=0.0011;LDAF=0.0023;SNPSOURCE=LOWCOV;RSQ=0.3561;AA=a;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 22 50443135 rs12159928 C A 100 PASS AN=2184;VT=SNP;RSQ=0.299;LDAF=0.0026;AA=c;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9958;ERATE=0.0007;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 22 50443153 rs12168233 G A 100 PASS AC=486;AA=g;RSQ=0.9889;AN=2184;VT=SNP;THETA=0.0011;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9955;LDAF=0.2231;AF=0.22;ASN_AF=0.19;AMR_AF=0.2;AFR_AF=0.28;EUR_AF=0.22 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.48,-0.48,-0.48 1|1:2:-5,-0.69,-0.1 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50443258 rs137851 A G 100 PASS THETA=0.0009;LDAF=0.9314;AA=g;AN=2184;RSQ=0.4514;VT=SNP;AVGPOST=0.9116;ERATE=0.0205;AC=2105;SNPSOURCE=LOWCOV;AF=0.96;ASN_AF=0.97;AMR_AF=0.97;AFR_AF=0.95;EUR_AF=0.96 GT:DS:GL 1|1:2:-5,-0.66,-0.11 1|0:0.9:-0.1,-0.69,-4.7 1|1:1.85:-2.52,-0.45,-0.19 1|1:1.95:-5,-0.68,-0.1 1|1:1.95:-5,-0.62,-0.12 22 50443449 rs137853 C T 100 PASS AC=1174;ERATE=0.0014;AN=2184;RSQ=0.9877;VT=SNP;AA=c;LDAF=0.5388;AVGPOST=0.9928;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.54;ASN_AF=0.53;AMR_AF=0.48;AFR_AF=0.6;EUR_AF=0.53 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-4.22,-0,-3.55 1|1:2:-5,-2.19,-0 0|0:0:-0,-2.02,-5 0|1:1:-5,0,-5 22 50443491 rs116972251 C T 100 PASS AC=12;ERATE=0.0004;AVGPOST=0.9986;THETA=0.0004;AN=2184;RSQ=0.9113;LDAF=0.0062;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0,-3.66,-5 0|0:0:-0,-3.13,-5 0|0:0:-0,-2.5,-5 0|0:0:-0,-2.7,-5 22 50443727 rs74637806 C G 100 PASS ERATE=0.0004;RSQ=0.9565;AN=2184;AVGPOST=0.9975;LDAF=0.0197;THETA=0.0005;VT=SNP;AA=c;AC=43;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.06;AMR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.66,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.02,-1.36,-5 22 50443739 . TA T 158 PASS AC=17;THETA=0.0009;LDAF=0.0083;AN=2184;RSQ=0.8768;VT=INDEL;ERATE=0.0008;AVGPOST=0.9974;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-2.7,-37 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-4.1 0|0:0:0,0,0 22 50443788 rs180856220 C T 100 PASS AN=2184;VT=SNP;AA=c;RSQ=0.7335;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.93,-5 0|0:0:-0,-3.08,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.18,-0.47,-2.13 0|0:0:-0,-4.7,-5 22 50443952 rs186088069 C T 100 PASS THETA=0.0002;RSQ=0.5421;AN=2184;VT=SNP;AA=c;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.36,-5 22 50444006 rs190944872 G A 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=g;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4467;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.61,-5 0|0:0:-0.19,-0.46,-1.99 0|0:0:-0.18,-0.47,-3.09 22 50444043 rs137854 C G 100 PASS AC=1130;AN=2184;VT=SNP;ERATE=0.0098;AA=c;LDAF=0.513;AVGPOST=0.9503;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9155;AF=0.52;ASN_AF=0.51;AMR_AF=0.47;AFR_AF=0.57;EUR_AF=0.51 GT:DS:GL 0|1:1:-4.7,-0,-3.74 1|0:0.95:-0.25,-0.44,-1.12 0|1:0.9:-0.11,-0.64,-4.1 0|0:0.05:-0.48,-0.48,-0.48 0|1:1.1:-0.48,-0.48,-0.48 22 50444066 rs137855 G A 100 PASS LDAF=0.526;AN=2184;RSQ=0.9575;AVGPOST=0.9736;AC=1163;VT=SNP;ERATE=0.0043;THETA=0.0025;SNPSOURCE=LOWCOV;AA=a;AF=0.53;ASN_AF=0.52;AMR_AF=0.48;AFR_AF=0.6;EUR_AF=0.52 GT:DS:GL 0|1:1:-4.7,-0.02,-1.41 1|0:1:-1.62,-0.01,-2.13 1|1:1.5:-4.7,-0.12,-0.62 0|0:0:-0.48,-0.48,-0.48 0|1:1:-3.21,-0.49,-0.17 22 50444188 rs9617113 T C 100 PASS RSQ=0.9772;AVGPOST=0.9927;AN=2184;VT=SNP;LDAF=0.1689;THETA=0.003;ERATE=0.0011;SNPSOURCE=LOWCOV;AA=t;AC=366;AF=0.17;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.15;EUR_AF=0.19 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0.05,-0.98,-5 1|1:2:-1.15,-0.39,-0.28 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-2.21,-5 22 50444399 rs77633392 C T 100 PASS ERATE=0.0004;AC=18;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0087;AA=c;AVGPOST=0.998;RSQ=0.9028;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.12,-0.63,-4 0|0:0:-0.04,-1.11,-5 0|0:0:-0.05,-0.94,-5 22 50444407 rs148629912 C T 100 PASS ERATE=0.0004;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0018;AA=c;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5309;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.08,-0.8,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.02,-1.41,-5 0|0:0:-0.05,-0.97,-5 22 50444480 rs183464052 G T 100 PASS ERATE=0.0004;LDAF=0.0009;AA=g;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5417;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0.05:-0.15,-0.54,-3.3 0|0:0:-0,-2,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.01,-1.87,-5 22 50444484 rs137856 A G 100 PASS 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THETA=0.0002;AA=g;LDAF=0.5554;AN=2184;VT=SNP;ERATE=0.001;AC=1211;SNPSOURCE=LOWCOV;RSQ=0.983;AVGPOST=0.9897;AF=0.55;ASN_AF=0.55;AMR_AF=0.52;AFR_AF=0.62;EUR_AF=0.54 GT:DS:GL 0|1:1:-1.73,-0.01,-5 1|0:1:-0.07,-0.84,-5 1|1:2:-5,-0.97,-0.05 0|0:0:-0.03,-1.17,-5 0|1:1:-0.07,-0.85,-5 22 50444615 rs141218020 C T 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;LDAF=0.0178;VT=SNP;AA=c;AC=32;SNPSOURCE=LOWCOV;AVGPOST=0.992;RSQ=0.8374;AF=0.01;AMR_AF=0.09;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.19,-0.46,-2.16 22 50444649 rs4327324 G C 100 PASS AC=444;AVGPOST=0.9927;AA=g;AN=2184;VT=SNP;THETA=0.0006;ERATE=0.002;RSQ=0.9817;SNPSOURCE=LOWCOV;LDAF=0.2049;AF=0.2;ASN_AF=0.16;AMR_AF=0.19;AFR_AF=0.28;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.01,-1.58,-5 0|0:0:-0.01,-1.54,-5 1|1:2:-5,-2.2,-0 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.02,-1.35,-5 22 50444688 rs116111215 C A 100 PASS 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PASS ERATE=0.0005;LDAF=0.0013;THETA=0.0014;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4085;AVGPOST=0.9984;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.14,-0.57,-2.82 0|0:0:-0.06,-0.89,-5 0|0:0:-0.12,-0.62,-4 22 50445359 rs117552742 G A 100 PASS AA=g;THETA=0.0004;AN=2184;RSQ=0.9249;VT=SNP;LDAF=0.0212;AC=44;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.996;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.07,-0.84,-5 0|0:0:-0.09,-0.73,-3.7 0|0:0:-0.06,-0.92,-5 0|0:0:-0.04,-1.03,-5 22 50445399 . A AG 5 PASS THETA=0.0009;AN=2184;RSQ=0.4677;VT=INDEL;ERATE=0.0017;AC=9;AVGPOST=0.9875;LDAF=0.0091;AF=0.0041;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-0.9,-6.6 0|0:0:0,0,0 0|0:0:0,-0.3,-4.2 0|0:0:0,0,0 0|0:0:0,0,0 22 50445601 rs137858 T C 100 PASS THETA=0.0004;LDAF=0.5385;AN=2184;VT=SNP;RSQ=0.9948;AA=c;AVGPOST=0.9969;AC=1176;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.54;ASN_AF=0.53;AMR_AF=0.48;AFR_AF=0.61;EUR_AF=0.53 GT:DS:GL 0|1:0.95:-0.05,-0.94,-5 1|0:1:-5,-0,-3.8 1|1:2:-5,-2.32,-0 0|0:0:-0.1,-0.68,-4.4 0|1:1:-5,-0,-4 22 50445667 rs114606021 C T 100 PASS ERATE=0.0004;AN=2184;VT=SNP;LDAF=0.0019;AA=c;AVGPOST=0.9989;RSQ=0.7849;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-4.7,-5 22 50445704 rs5771222 T C 100 PASS ERATE=0.0004;LDAF=0.5393;AN=2184;VT=SNP;THETA=0.0018;AA=c;AC=1178;SNPSOURCE=LOWCOV;RSQ=0.9975;AVGPOST=0.9987;AF=0.54;ASN_AF=0.53;AMR_AF=0.48;AFR_AF=0.62;EUR_AF=0.53 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0,-2.63 1|1:2:-5,-1.66,-0.01 0|0:0:-0.05,-0.96,-5 0|1:1:-5,0,-5 22 50445922 rs137859 C T 100 PASS AC=1171;RSQ=0.9722;LDAF=0.5318;THETA=0.0004;AN=2184;AVGPOST=0.9834;ERATE=0.0047;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AF=0.54;ASN_AF=0.53;AMR_AF=0.48;AFR_AF=0.6;EUR_AF=0.52 GT:DS:GL 0|1:1:-4.7,-0,-3.4 1|0:1:-2.34,-0.45,-0.19 1|1:2:-5,-0.63,-0.12 0|0:0:-0.18,-0.48,-2.21 0|1:1:-4.7,-0,-3.66 22 50445966 rs66520758 A AT 428 PASS ERATE=0.0082;RSQ=0.901;AN=2184;AVGPOST=0.9344;VT=INDEL;LDAF=0.5192;AC=1146;THETA=0.0007;AF=0.52;ASN_AF=0.5;AMR_AF=0.48;AFR_AF=0.59;EUR_AF=0.52 GT:DS:GL 0|1:1:-0.4,0,-2.4 1|0:1.2:0,0,0 1|1:1.75:0,0,0 0|0:0:0,0,0 0|1:1.1:0,0,0 22 50446035 rs186757979 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;LDAF=0.0037;AC=6;VT=SNP;RSQ=0.6345;AVGPOST=0.9969;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.15,-0.54,-2.95 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.48,-0.48,-0.48 22 50446163 rs116589949 C T 100 PASS RSQ=0.9398;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.59,-5 0|0:0:-0,-3.66,-5 22 50446282 rs111231752 T TAAAC 1213 PASS AVGPOST=0.9939;LDAF=0.5372;AN=2184;VT=INDEL;RSQ=0.9896;THETA=0.0033;AC=1178;ERATE=0.0008;AF=0.54;ASN_AF=0.53;AMR_AF=0.48;AFR_AF=0.61;EUR_AF=0.53 GT:DS:GL 0|1:1:-29.4,0,-29 1|0:0.95:0,-1.2,-20.1 1|1:2:-27.2,-1.2,0 0|0:0:0,0,0 0|1:1:0,-0.9,-17.1 22 50446413 rs192352429 A G 100 PASS ERATE=0.0004;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.5379;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.11,-0.66,-3.92 0|0:0:-0,-3.62,-5 22 50446541 . G GA 86 PASS AC=163;AN=2184;RSQ=0.5296;VT=INDEL;THETA=0.0008;ERATE=0.0365;AVGPOST=0.8791;LDAF=0.1229;AF=0.07;ASN_AF=0.07;AMR_AF=0.07;AFR_AF=0.1;EUR_AF=0.06 GT:DS:GL 0|0:0.1:0,-1.4,-11.5 0|0:0.1:0,-1,-6.1 0|0:0.35:0,-0.3,-0.9 0|0:0.1:0,-0.3,-2.7 0|0:0.1:0,0,0 22 50446550 rs137862 C A 100 PASS AVGPOST=0.9936;ERATE=0.0013;AN=2184;THETA=0.0005;VT=SNP;AA=c;RSQ=0.9894;AC=1176;SNPSOURCE=LOWCOV;LDAF=0.5374;AF=0.54;ASN_AF=0.53;AMR_AF=0.48;AFR_AF=0.6;EUR_AF=0.53 GT:DS:GL 0|1:1:-1.39,-0.02,-5 1|0:1:-5,-0,-2.52 1|1:1.95:-5,-0.29,-0.31 0|0:0:-0.03,-1.16,-5 0|1:1:-3.52,-0.48,-0.18 22 50446577 rs78199392 C G 100 PASS ERATE=0.0004;AA=C;RSQ=0.7615;THETA=0.0004;AN=2184;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=3;LDAF=0.0017;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.07,-0.82,-5 22 50446616 rs184733826 G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-3.28,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.11,-5 22 50446643 rs137863 A G 100 PASS RSQ=0.9837;AVGPOST=0.9957;AA=G;AN=2184;THETA=0.0005;LDAF=0.8949;VT=SNP;SNPSOURCE=LOWCOV;AC=1955;ERATE=0.0003;AF=0.9;ASN_AF=0.88;AMR_AF=0.8;AFR_AF=0.93;EUR_AF=0.93 GT:DS:GL 1|1:2:-5,-2.17,-0 1|1:2:-5,-3.92,-0 1|1:2:-5,-2.66,-0 1|1:2:-5,-0.67,-0.1 1|1:2:-5,-1.49,-0.01 22 50446648 rs147628840 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.6885;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0,-3.1,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.02,-1.34,-5 22 50446759 rs76643926 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.9789;AVGPOST=0.999;VT=SNP;LDAF=0.0154;AC=33;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-1.94,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0.11,-0.65,-5 22 50446763 rs139626737 G C 100 PASS LDAF=0.0013;AVGPOST=0.9983;AA=G;AN=2184;THETA=0.0001;RSQ=0.4996;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0.1,-0.67,-5 22 50446853 rs114592430 C T 100 PASS RSQ=0.6772;AA=C;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9978;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.24,-5 0|0:0:-0.22,-0.46,-1.33 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.05,-0.94,-5 22 50446905 rs149764551 C T 100 PASS RSQ=0.5655;AA=C;AN=2184;VT=SNP;AVGPOST=0.9969;LDAF=0.0029;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;ERATE=0.0007;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.53,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.18,-0.48,-2.33 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.03,-1.15,-5 22 50446988 rs137864 C T 100 PASS RSQ=0.9902;AC=1141;AN=2184;AVGPOST=0.9944;VT=SNP;ERATE=0.001;LDAF=0.5219;AA=c;SNPSOURCE=LOWCOV;THETA=0.0024;AF=0.52;ASN_AF=0.53;AMR_AF=0.48;AFR_AF=0.54;EUR_AF=0.53 GT:DS:GL 0|1:1:-5,-0,-3.03 1|0:1:-5,-0.34,-0.27 1|1:2:-2.79,-0.5,-0.17 0|0:0:-0.05,-0.98,-5 0|1:1:-0.11,-0.67,-5 22 50447199 rs145724174 A G 100 PASS THETA=0.0061;AN=2184;VT=SNP;AA=A;AVGPOST=0.9964;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0006;LDAF=0.005;RSQ=0.7327;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.22,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.11,-0.65,-4.7 22 50447352 rs1883289 C T 100 PASS RSQ=0.9722;THETA=0.0022;AN=2184;AC=413;VT=SNP;AA=c;LDAF=0.1907;ERATE=0.0018;SNPSOURCE=LOWCOV;AVGPOST=0.9891;AF=0.19;ASN_AF=0.17;AMR_AF=0.18;AFR_AF=0.22;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.08,-0.76,-5 0|0:0:-0,-2.61,-5 1|1:2:-5,-1.93,-0.01 0|0:0:-0.03,-1.14,-5 0|0:0:-0.1,-0.67,-5 22 50447354 rs137865 T C 100 PASS ERATE=0.0004;RSQ=0.9909;AN=2184;AC=773;AVGPOST=0.9947;VT=SNP;LDAF=0.3539;THETA=0.0017;SNPSOURCE=LOWCOV;AA=t;AF=0.35;ASN_AF=0.33;AMR_AF=0.3;AFR_AF=0.48;EUR_AF=0.31 GT:DS:GL 0|1:1:-1.93,-0.01,-3.74 1|0:1:-5,0,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.04,-1.09,-5 0|1:1:-5,-0.01,-1.6 22 50447384 rs137866 G A 100 PASS RSQ=0.9875;AVGPOST=0.9933;AA=g;AN=2184;ERATE=0.0009;AC=669;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.3066;THETA=0.0007;AF=0.31;ASN_AF=0.33;AMR_AF=0.27;AFR_AF=0.3;EUR_AF=0.31 GT:DS:GL 0|1:1:-0.08,-0.77,-5 1|0:1:-5,-0,-3.62 0|0:0:-0,-2.26,-5 0|0:0:-0.07,-0.84,-5 0|1:1:-5,-0,-2.31 22 50447432 rs113811476 C T 100 PASS AVGPOST=0.9994;AN=2184;RSQ=0.7301;VT=SNP;THETA=0.008;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;LDAF=0.0008;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-3.66,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.6,-5 22 50447556 . T TG 110 PASS THETA=0.0009;AN=2184;LDAF=0.0054;AC=8;VT=INDEL;RSQ=0.6866;ERATE=0.0008;AVGPOST=0.9959;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-0.6,-6.1 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50447778 rs148951280 G T 100 PASS AVGPOST=0.9945;AA=g;AN=2184;VT=SNP;AC=41;ERATE=0.0008;LDAF=0.0209;SNPSOURCE=LOWCOV;RSQ=0.8828;THETA=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.22,-0.46,-1.25 0|0:0:-0.02,-1.42,-5 0|0:0:-0.18,-0.47,-3.07 22 50447872 rs193118464 C T 100 PASS RSQ=0.7911;AN=2184;AVGPOST=0.9962;VT=SNP;LDAF=0.0072;AA=c;AC=15;SNPSOURCE=LOWCOV;THETA=0.0052;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.37 0|0:0:-0.08,-0.78,-5 22 50448233 rs185328836 G T 100 PASS ERATE=0.0004;RSQ=0.4728;AA=G;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;THETA=0.002;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.37,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.18,-0.47,-2.15 0|0:0:-0.01,-1.83,-5 22 50448306 rs114386419 C T 100 PASS AA=C;AN=2184;AC=45;THETA=0.004;VT=SNP;ERATE=0.0008;RSQ=0.9152;AVGPOST=0.9954;SNPSOURCE=LOWCOV;LDAF=0.021;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.85,-5 22 50448448 rs145735914 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.0032;AC=6;VT=SNP;AVGPOST=0.9991;RSQ=0.8717;SNPSOURCE=LOWCOV;THETA=0.0034;AF=0.0027;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.29,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0,-2.9,-5 22 50448472 rs7291872 G C 100 PASS ERATE=0.0004;AA=C;LDAF=0.9468;AN=2184;VT=SNP;THETA=0.0055;RSQ=0.9343;SNPSOURCE=LOWCOV;AC=2070;AVGPOST=0.9911;AF=0.95;ASN_AF=1;AMR_AF=0.92;AFR_AF=0.99;EUR_AF=0.89 GT:DS:GL 1|1:2:-5,-0.66,-0.11 1|0:1:-5,-0,-4.7 1|1:2:-5,-0.96,-0.05 1|0:1:-2.08,-0.01,-2.02 0|1:1:-4.4,-0,-5 22 50448503 rs189781492 T A 100 PASS ERATE=0.0005;RSQ=0.5134;AA=T;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0043;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0.01,-1.81,-5 0|0:0:-0.11,-0.64,-3.25 0|0:0:-0.16,-0.51,-2.56 0|0:0:-0.07,-0.85,-5 22 50448519 rs36007448 A G 100 PASS RSQ=0.9709;AVGPOST=0.99;AN=2184;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;LDAF=0.1668;ERATE=0.0007;AC=366;AF=0.17;ASN_AF=0.21;AMR_AF=0.14;AFR_AF=0.16;EUR_AF=0.15 GT:DS:GL 0|1:1:-0.48,-0.48,-0.48 1|0:1:-5,-0.01,-1.73 0|0:0:-0.04,-1.04,-5 0|0:0:-0.16,-0.5,-2.53 0|1:1:-2.48,-0.02,-1.4 22 50448549 rs35290412 A G 100 PASS ERATE=0.0005;AN=2184;AVGPOST=0.9893;RSQ=0.9688;VT=SNP;AA=A;LDAF=0.1669;AC=365;THETA=0.0012;SNPSOURCE=LOWCOV;AF=0.17;ASN_AF=0.21;AMR_AF=0.14;AFR_AF=0.16;EUR_AF=0.15 GT:DS:GL 0|1:1:-3.09,-0.47,-0.18 1|0:1:-5,-0.07,-0.82 0|0:0:-0.01,-1.9,-5 0|0:0:-0.14,-0.56,-3.34 0|1:1:-0.48,-0.48,-0.48 22 50448628 rs35631333 A G 100 PASS AN=2184;THETA=0.0008;VT=SNP;AA=A;AC=298;LDAF=0.1397;ERATE=0.0016;SNPSOURCE=LOWCOV;RSQ=0.904;AVGPOST=0.9701;AF=0.14;ASN_AF=0.21;AMR_AF=0.09;AFR_AF=0.14;EUR_AF=0.1 GT:DS:GL 0|1:0.95:-0.48,-0.48,-0.48 1|0:0.95:-0.12,-0.62,-2.41 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.1,-0.68,-4.4 0|0:0.25:-0.19,-0.46,-2.93 22 50448862 rs5771245 T C 100 PASS AC=1217;RSQ=0.7926;AVGPOST=0.8608;AA=C;AN=2184;LDAF=0.5369;VT=SNP;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0202;AF=0.56;ASN_AF=0.62;AMR_AF=0.51;AFR_AF=0.47;EUR_AF=0.59 GT:DS:GL 0|1:1.1:-0.48,-0.48,-0.48 1|0:0.65:-0.04,-1.04,-5 0|0:0.2:-0.48,-0.48,-0.48 1|0:0.9:-0.18,-0.47,-2.49 0|1:1.25:-5,-0.67,-0.11 22 50448933 rs181367758 C A 100 PASS AA=C;AN=2184;RSQ=0.4408;VT=SNP;LDAF=0.0034;THETA=0.0125;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9958;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.48,-1.46 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.29,-0.39,-1.13 0|0:0:-0.48,-0.48,-0.48 22 50449014 rs146606880 C T 100 PASS LDAF=0.0133;AA=C;RSQ=0.6737;AVGPOST=0.9888;AN=2184;VT=SNP;THETA=0.0017;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=19;AF=0.01;ASN_AF=0.0035;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.83,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.86,-5 0|0:0:-0.11,-0.63,-4 22 50449040 rs183680412 G A 100 PASS AA=G;AN=2184;AC=13;ERATE=0.0009;VT=SNP;LDAF=0.0094;AVGPOST=0.9918;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.6442;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.06,-0.9,-5 0|0:0:-0.19,-0.45,-2.15 22 50449404 rs188351863 G T 100 PASS LDAF=0.0346;AA=G;AN=2184;VT=SNP;THETA=0.0027;ERATE=0.0026;AVGPOST=0.9405;SNPSOURCE=LOWCOV;RSQ=0.3208;AC=25;AF=0.01;ASN_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.26,-0.44,-1.05 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50449433 rs71196396 TC T 101 PASS THETA=0.0009;RSQ=0.6063;AVGPOST=0.7527;AN=2184;AC=1006;VT=INDEL;LDAF=0.4713;ERATE=0.0116;AF=0.46;ASN_AF=0.48;AMR_AF=0.45;AFR_AF=0.6;EUR_AF=0.36 GT:DS:GL 1|1:1.7:-2.9,-0.3,0 1|0:0.9:0,0,0 1|1:1.3:0,0,0 0|0:0:0,0,0 0|1:0.95:0,0,0 22 50449531 rs73183310 A G 100 PASS ERATE=0.0023;AN=2184;VT=SNP;RSQ=0.9352;LDAF=0.2877;AA=A;AVGPOST=0.9672;AC=621;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.28;ASN_AF=0.3;AMR_AF=0.27;AFR_AF=0.23;EUR_AF=0.31 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.48,-0.48,-0.48 1|0:1:-3,-0.48,-0.18 0|0:0:-0.02,-1.39,-5 22 50449648 rs74815518 C T 100 PASS AA=C;AVGPOST=0.9943;AN=2184;VT=SNP;AC=34;LDAF=0.0177;RSQ=0.8708;SNPSOURCE=LOWCOV;THETA=0.0043;ERATE=0.0003;AF=0.02;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.6,-5 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|1:1:-5,-0,-2.59 1|0:1:-5,-0,-3.14 22 50449762 rs5771254 A C 100 PASS RSQ=0.9739;ERATE=0.0027;THETA=0.0014;AN=2184;VT=SNP;AA=A;AVGPOST=0.984;SNPSOURCE=LOWCOV;AC=818;LDAF=0.3752;AF=0.37;ASN_AF=0.33;AMR_AF=0.32;AFR_AF=0.52;EUR_AF=0.34 GT:DS:GL 0|0:0:-0,-3.22,-5 0|0:0:-0.04,-1.06,-5 0|0:0.15:-1.19,-0.03,-3.92 1|0:1:-4.7,-0,-5 0|0:0:-0.06,-0.89,-5 22 50449804 rs137867 T C 100 PASS ERATE=0.0004;AA=C;RSQ=0.9037;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9356;LDAF=0.7098;SNPSOURCE=LOWCOV;AC=1577;AF=0.72;ASN_AF=0.77;AMR_AF=0.6;AFR_AF=0.87;EUR_AF=0.65 GT:DS:GL 1|1:2:-5,-1.55,-0.01 1|0:1:-2.86,-0.49,-0.17 1|1:2:-2.73,-0.49,-0.17 0|0:0.4:-0.03,-1.14,-5 0|1:1:-0.1,-0.7,-5 22 50449889 rs181803006 T C 100 PASS AVGPOST=0.9986;AA=T;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;LDAF=0.0012;RSQ=0.5057;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.19,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-1.99,-5 0|0:0.05:-0.9,-0.06,-5 22 50450133 rs12171069 G C 100 PASS ERATE=0.0004;LDAF=0.1628;RSQ=0.9752;AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9909;SNPSOURCE=LOWCOV;AC=355;AF=0.16;ASN_AF=0.05;AMR_AF=0.2;AFR_AF=0.14;EUR_AF=0.24 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.01,-1.47,-5 1|0:0.9:-0.07,-0.84,-5 0|0:0:-0.03,-1.13,-5 22 50450229 rs141326433 G A 100 PASS ERATE=0.0004;LDAF=0.0052;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;AC=10;RSQ=0.8462;SNPSOURCE=LOWCOV;AF=0.0046;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.16,-0.52,-3.52 0|0:0:-0.24,-0.44,-1.16 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.1,-0.68,-4.7 22 50450423 rs145115152 C G 100 PASS AN=2184;VT=SNP;RSQ=0.5718;AA=c;AVGPOST=0.9971;LDAF=0.0028;SNPSOURCE=LOWCOV;THETA=0.0042;ERATE=0.0006;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.15,-0.54,-3.32 0|0:0:-0.11,-0.66,-4.7 22 50450455 rs137868 T C 100 PASS LDAF=0.8593;AN=2184;AC=1881;THETA=0.0005;AVGPOST=0.9917;VT=SNP;AA=c;RSQ=0.976;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.86;ASN_AF=0.9;AMR_AF=0.76;AFR_AF=0.92;EUR_AF=0.85 GT:DS:GL 1|1:2:-5,-0.74,-0.09 1|0:1:-0.21,-0.46,-1.36 1|1:2:-5,-1.01,-0.04 1|0:1:-4.7,-0.13,-0.58 0|1:1:-3.47,-0.47,-0.18 22 50450491 rs137869 C T 100 PASS THETA=0.0004;AN=2184;AC=1093;RSQ=0.9823;AVGPOST=0.9883;VT=SNP;LDAF=0.4985;AA=c;ERATE=0.0011;SNPSOURCE=LOWCOV;AF=0.5;ASN_AF=0.57;AMR_AF=0.43;AFR_AF=0.45;EUR_AF=0.51 GT:DS:GL 1|1:1.9:-5,-1.21,-0.03 1|0:1:-2.3,-0.02,-1.37 1|1:2:-5,-1.01,-0.05 0|0:0:-0.2,-0.44,-2.13 0|1:1:-0.11,-0.64,-4.7 22 50450508 rs71196397 CTGAG C 1096 PASS ERATE=0.0013;THETA=0.0004;AVGPOST=0.9658;AN=2184;VT=INDEL;AC=1079;LDAF=0.4866;RSQ=0.9491;AF=0.49;ASN_AF=0.56;AMR_AF=0.43;AFR_AF=0.44;EUR_AF=0.51 GT:DS:GL 1|1:1.9:-5.5,-0.3,0 1|0:1:0,-0.3,-7.6 1|1:1.9:0,0,0 0|0:0:0,0,0 0|1:1:0,-0.3,-7.8 22 50450514 rs137870 GAGT G 277 PASS RSQ=0.7851;AVGPOST=0.8657;AN=2184;ERATE=0.0273;LDAF=0.4205;VT=INDEL;AC=960;THETA=0.0053;AF=0.44;ASN_AF=0.49;AMR_AF=0.37;AFR_AF=0.4;EUR_AF=0.46 GT:DS:GL 0|1:0.95:-1.3,0,-3 1|0:0.75:0,-0.3,-7.4 1|1:1.35:0,0,0 0|0:0.05:0,0,0 0|1:0.85:0,-0.3,-7.4 22 50450543 rs137871 C T 100 PASS LDAF=0.4983;ERATE=0.0013;AN=2184;THETA=0.0005;RSQ=0.9826;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=1092;AVGPOST=0.9885;AF=0.5;ASN_AF=0.56;AMR_AF=0.44;AFR_AF=0.45;EUR_AF=0.51 GT:DS:GL 1|1:2:-5,-1.47,-0.01 1|0:1:-1.61,-0.01,-4.7 1|1:2:-5,-0.99,-0.05 0|0:0:-0.05,-0.95,-5 0|1:1:-2.14,-0,-4 22 50450586 rs12161089 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0119;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=25;RSQ=0.9614;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.92,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.01,-1.78,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.45,-2.14 22 50450624 rs186449948 C G 100 PASS AVGPOST=0.9977;AN=2184;LDAF=0.0037;AC=6;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.7419;AF=0.0027;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.97,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.03,-1.17,-5 0|0:0:-0.06,-0.86,-5 22 50450669 rs79641456 G C 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=g;AN=2184;RSQ=0.9612;VT=SNP;THETA=0.0056;LDAF=0.017;SNPSOURCE=LOWCOV;AC=36;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.22,-0.46,-1.33 0|0:0.05:-0.22,-0.46,-1.25 0|0:0:-0.08,-0.76,-5 0|0:0:-0.48,-0.48,-0.48 22 50450787 rs56044646 C T 100 PASS ERATE=0.0004;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9748;AA=c;AC=108;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.0497;AF=0.05;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.01,-1.51,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.04,-1.05,-5 0|0:0:-0.1,-0.67,-5 22 50450855 rs192123798 C T 100 PASS AC=7;RSQ=0.8921;AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0034;AA=c;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.63,-5 0|0:0:-0.18,-0.47,-2.31 0|0:0:-0.14,-0.58,-2.07 0|0:0:-0,-2.03,-5 0|0:0:-0.09,-0.74,-5 22 50450894 rs141586094 C T 100 PASS ERATE=0.0005;LDAF=0.0009;AN=2184;VT=SNP;AA=c;RSQ=0.5392;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.13,-0.6,-3.01 0|0:0:-0.07,-0.85,-4.4 0|0:0:-0.01,-1.68,-5 0|0:0:-0.11,-0.66,-5 22 50451080 rs150081506 C T 100 PASS ERATE=0.0005;THETA=0.0004;AN=2184;RSQ=0.366;AVGPOST=0.9967;VT=SNP;AA=c;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.2,-0.45,-2.12 0|0:0:-0.06,-0.9,-5 0|0:0:-0.06,-0.87,-5 22 50451279 rs34538339 CG C 648 PASS AVGPOST=0.9782;AN=2184;LDAF=0.5412;VT=INDEL;ERATE=0.0026;RSQ=0.9646;AC=1186;THETA=0.001;AF=0.54;ASN_AF=0.59;AMR_AF=0.47;AFR_AF=0.55;EUR_AF=0.53 GT:DS:GL 1|1:1.95:-7.4,-0.6,0 1|0:1:-3.7,-0.3,0 1|1:1.9:0,0,0 0|0:0:0,-0.3,-2 0|1:1:0,0,0 22 50451507 rs181819142 A C 100 PASS ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0013;RSQ=0.527;AN=2184;VT=SNP;THETA=0.0018;AA=A;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.67,-5 0|0:0:-0.48,-0.48,-0.48 22 50451608 rs147390461 C A 100 PASS ERATE=0.0004;AA=C;RSQ=0.7095;AN=2184;VT=SNP;AVGPOST=0.9989;THETA=0.0066;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.21,-0.47,-1.33 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.11,-0.65,-4.7 22 50451657 rs139561366 C A 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9981;RSQ=0.7371;VT=SNP;THETA=0.0011;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.12,-0.6,-3.8 0|0:0:-0.2,-0.45,-2.18 0|0:0:-0.07,-0.85,-5 22 50451687 rs137873 T C 100 PASS AA=C;ERATE=0.0097;LDAF=0.5321;AVGPOST=0.9362;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9064;SNPSOURCE=LOWCOV;AC=1190;AF=0.54;ASN_AF=0.58;AMR_AF=0.46;AFR_AF=0.64;EUR_AF=0.5 GT:DS:GL 1|1:1.95:-5,-1.89,-0.01 1|0:0.95:-0.23,-0.45,-1.25 1|1:1.95:-2.67,-0.46,-0.19 0|0:0:-0.05,-0.95,-5 0|1:0.95:-0.1,-0.67,-5 22 50451701 rs35662398 A AG 380 PASS RSQ=0.8169;AVGPOST=0.8781;AN=2184;ERATE=0.0159;VT=INDEL;THETA=0.0005;AC=981;LDAF=0.4465;AF=0.45;ASN_AF=0.55;AMR_AF=0.39;AFR_AF=0.36;EUR_AF=0.46 GT:DS:GL 1|1:2:-28,-2.7,0 1|0:0.85:0,0,0 1|1:1.75:0,0,0 0|0:0.2:0,-0.3,-3.9 0|1:1.2:0,0,0 22 50451759 rs186925678 T A 100 PASS RSQ=0.5773;AA=T;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.998;ERATE=0.0008;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.68,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.19,-0.46,-2.16 22 50451771 rs713669 C T 100 PASS AA=T;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9622;ERATE=0.0048;SNPSOURCE=LOWCOV;LDAF=0.5419;AC=1184;AVGPOST=0.9764;AF=0.54;ASN_AF=0.61;AMR_AF=0.47;AFR_AF=0.54;EUR_AF=0.53 GT:DS:GL 1|1:2:-5,-2.81,-0 1|0:1:-1.65,-0.01,-3.21 1|1:2:-5,-0.72,-0.09 0|0:0.05:-0.11,-0.66,-3.85 0|1:1:-2.42,-0.02,-1.4 22 50451808 rs191344782 A C 100 PASS ERATE=0.0005;THETA=0.0022;AN=2184;VT=SNP;RSQ=0.7259;AA=A;AVGPOST=0.9988;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.67,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.06,-0.88,-5 22 50451897 rs183102815 G A 100 PASS ERATE=0.0004;RSQ=0.6972;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0029;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AF=0.0018;AMR_AF=0.01;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.08,-0.78,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.11,-0.64,-4 22 50451951 rs137875 A G 100 PASS ERATE=0.0004;AN=2184;AC=1076;VT=SNP;LDAF=0.4917;THETA=0.0019;RSQ=0.9802;SNPSOURCE=LOWCOV;AVGPOST=0.9867;AA=a;AF=0.49;ASN_AF=0.58;AMR_AF=0.43;AFR_AF=0.4;EUR_AF=0.51 GT:DS:GL 1|1:2:-5,-1.63,-0.01 1|0:1:-2.34,-0.1,-0.69 1|1:2:-5,-1.01,-0.04 0|0:0:-0.18,-0.48,-2.18 0|1:1:-5,-0.73,-0.09 22 50451972 . C CCA 235 PASS AC=72;AN=2184;VT=INDEL;AVGPOST=0.9894;ERATE=0.001;RSQ=0.8926;LDAF=0.0356;THETA=0.0003;AF=0.03;AMR_AF=0.02;AFR_AF=0.13;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-1.2,-16.9 0|0:0:0,-0.3,-4.2 0|0:0.05:0,-0.6,-8.5 0|0:0:0,-0.3,-4.3 0|0:0:0,-0.3,-4.3 22 50452051 rs143585980 C T 100 PASS LDAF=0.0027;AN=2184;THETA=0.0008;VT=SNP;AA=A;AVGPOST=0.9954;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;RSQ=0.2979;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.47,-2.81 0|0:0:-0.13,-0.6,-3.12 0|0:0:-0.08,-0.78,-3.85 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.43,-1.83 22 50452207 rs137876 A G 100 PASS THETA=0.0004;AA=G;AN=2184;AC=1076;VT=SNP;ERATE=0.0016;SNPSOURCE=LOWCOV;LDAF=0.4926;AVGPOST=0.9824;RSQ=0.972;AF=0.49;ASN_AF=0.59;AMR_AF=0.43;AFR_AF=0.4;EUR_AF=0.51 GT:DS:GL 1|1:2:-5,-0.61,-0.12 1|0:1:-2.84,-0.49,-0.17 1|1:2:-5,-0.99,-0.05 0|0:0:-0.05,-0.93,-5 0|1:1:-0.48,-0.48,-0.48 22 50452254 rs11409859 G GC 532 PASS LDAF=0.9965;AN=2184;RSQ=0.3586;AVGPOST=0.9944;VT=INDEL;AC=2181;THETA=0.0058;ERATE=0.0007;AF=1;ASN_AF=1;AMR_AF=1;AFR_AF=0.99;EUR_AF=1 GT:DS:GL 1|1:2:-4.5,-0.3,0 1|1:2:0,0,0 1|1:2:0,0,0 1|1:2:-9,-0.6,0 1|1:2:0,0,0 22 50452485 rs114490444 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9946;AN=2184;LDAF=0.0125;VT=SNP;AC=24;THETA=0.0053;RSQ=0.8373;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.06,-0.87,-5 0|0:0:-0.1,-0.67,-4.4 22 50452651 rs186482622 A G 100 PASS ERATE=0.0004;AN=2184;LDAF=0.001;VT=SNP;AA=A;THETA=0.0017;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9984;RSQ=0.294;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.36,-0.25,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.04,-1.09,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.11,-0.67,-5 22 50452830 rs118116626 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9947;VT=SNP;LDAF=0.0049;AC=5;RSQ=0.5488;SNPSOURCE=LOWCOV;THETA=0.0029;ERATE=0.0007;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.44,-1.95 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.1,-0.68,-5 22 50453036 rs10427884 T C 100 PASS AA=T;AN=2184;RSQ=0.9374;AC=277;VT=SNP;THETA=0.0006;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9816;LDAF=0.1301;AF=0.13;ASN_AF=0.13;AMR_AF=0.13;AFR_AF=0.09;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.11,-0.66,-4.7 22 50453197 rs144060863 C T 100 PASS THETA=0.0021;ERATE=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;AA=c;RSQ=0.5882;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-2.26,-5 0|0:0:-0.1,-0.69,-5 22 50453653 rs148685006 C A 100 PASS AC=61;THETA=0.0023;AN=2184;VT=SNP;AA=c;ERATE=0.0019;LDAF=0.0351;SNPSOURCE=LOWCOV;RSQ=0.6513;AVGPOST=0.9697;AF=0.03;ASN_AF=0.03;AMR_AF=0.05;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50453795 rs113243952 C T 100 PASS AA=C;AVGPOST=0.8965;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.691;LDAF=0.1501;AC=274;ERATE=0.0049;SNPSOURCE=LOWCOV;AF=0.13;ASN_AF=0.13;AMR_AF=0.14;AFR_AF=0.05;EUR_AF=0.16 GT:DS:GL 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.18,-0.48,-2.62 0|0:0.05:-0.48,-0.48,-0.48 22 50453828 rs137877 T G 100 PASS THETA=0.0023;AC=937;AA=G;AN=2184;VT=SNP;RSQ=0.4545;LDAF=0.4475;AVGPOST=0.6862;SNPSOURCE=LOWCOV;ERATE=0.0347;AF=0.43;ASN_AF=0.5;AMR_AF=0.4;AFR_AF=0.35;EUR_AF=0.44 GT:DS:GL 1|1:1.45:-0.48,-0.48,-0.48 0|0:0.6:-0.48,-0.48,-0.48 1|1:1.65:-0.44,-0.46,-0.54 0|0:0.05:-0.11,-0.66,-4.7 0|1:0.8:-0.48,-0.48,-0.48 22 50453878 rs6010223 G A 100 PASS AC=910;AA=g;AN=2184;ERATE=0.0078;LDAF=0.4136;VT=SNP;AVGPOST=0.7912;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.6622;AF=0.42;ASN_AF=0.47;AMR_AF=0.38;AFR_AF=0.3;EUR_AF=0.47 GT:DS:GL 1|1:1.6:-0.48,-0.48,-0.48 1|0:0.75:-0.48,-0.48,-0.48 1|1:1.55:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|1:0.75:-0.48,-0.48,-0.48 22 50454000 rs5771299 G A 100 PASS AC=343;THETA=0.0004;AA=G;AN=2184;RSQ=0.7053;LDAF=0.172;VT=SNP;AVGPOST=0.8885;SNPSOURCE=LOWCOV;ERATE=0.0056;AF=0.16;ASN_AF=0.17;AMR_AF=0.14;AFR_AF=0.11;EUR_AF=0.19 GT:DS:GL 1|0:1:-5,-0.02,-1.43 0|0:0.05:-0.12,-0.63,-3.28 1|1:1.8:-0.23,-0.45,-1.2 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50454119 rs182343153 C T 100 PASS AA=C;AN=2184;VT=SNP;AC=10;THETA=0.0006;ERATE=0.0008;RSQ=0.5871;AVGPOST=0.9928;SNPSOURCE=LOWCOV;LDAF=0.0076;AF=0.0046;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.03,-1.18,-5 0|0:0:-0.06,-0.9,-5 22 50454436 rs7291940 A G 100 PASS THETA=0.0004;RSQ=0.9181;AN=2184;AC=259;LDAF=0.1207;VT=SNP;ERATE=0.001;AVGPOST=0.9763;SNPSOURCE=LOWCOV;AA=a;AF=0.12;ASN_AF=0.03;AMR_AF=0.15;AFR_AF=0.18;EUR_AF=0.13 GT:DS:GL 0|1:1:-2.16,-0.01,-1.74 0|0:0:-0.02,-1.3,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.11,-0.66,-4.7 0|1:0.95:-0.11,-0.64,-4.1 22 50454453 rs187717047 A T 100 PASS ERATE=0.0005;LDAF=0.0016;THETA=0.0099;AN=2184;AVGPOST=0.9975;VT=SNP;RSQ=0.2978;SNPSOURCE=LOWCOV;AC=1;AA=a;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.04,-1.06,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.11,-0.65,-4.7 22 50454477 rs7292393 T C 100 PASS THETA=0.0015;LDAF=0.0466;AN=2184;VT=SNP;AA=c;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=96;RSQ=0.9256;AVGPOST=0.9905;AF=0.04;AMR_AF=0.02;AFR_AF=0.18 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0.05:-0.17,-0.49,-2.43 0|0:0:-0.03,-1.15,-5 0|0:0:-0.15,-0.53,-3.19 0|0:0:-0.11,-0.66,-4.7 22 50454499 rs5771120 C G 100 PASS AC=793;AVGPOST=0.9564;AN=2184;VT=SNP;THETA=0.0084;RSQ=0.9271;AA=c;LDAF=0.364;SNPSOURCE=LOWCOV;ERATE=0.0061;AF=0.36;ASN_AF=0.49;AMR_AF=0.28;AFR_AF=0.35;EUR_AF=0.31 GT:DS:GL 0|0:0:-0,-2.11,-5 0|0:0.2:-0.18,-0.47,-2.31 0|0:0:-0.05,-0.98,-4.1 1|0:1.05:-5,-0.73,-0.09 0|0:0:-0.06,-0.87,-5 22 50454522 rs193134436 C T 100 PASS ERATE=0.0004;LDAF=0.0021;AN=2184;VT=SNP;AA=c;THETA=0.003;RSQ=0.4575;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.68,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.02,-1.42,-5 0|0:0:-0.1,-0.67,-5 22 50454688 rs117793875 G A 100 PASS AA=g;AN=2184;RSQ=0.8113;VT=SNP;AC=34;AVGPOST=0.9915;LDAF=0.0183;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0006;AF=0.02;ASN_AF=0.06;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-2.75,-5 0|0:0:-0.02,-1.25,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0.03,-1.15,-5 22 50454825 rs7292558 A G 100 PASS ERATE=0.0326;AC=695;AA=g;AVGPOST=0.9442;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9104;LDAF=0.3272;THETA=0.0064;AF=0.32;ASN_AF=0.34;AMR_AF=0.22;AFR_AF=0.54;EUR_AF=0.2 GT:DS:GL 0|0:0.15:-0.01,-1.7,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-3.32,-5 0|0:0:-0.02,-1.47,-5 0|1:1:-5,0,-5 22 50454855 . G T 100 PASS AA=g;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0055;LDAF=0.0019;RSQ=0.9014;SNPSOURCE=EXOME;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-2.96,-5 0|0:0:-0,-3.02,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.16,-5 22 50454859 rs79699132 A T 100 PASS AVGPOST=0.9843;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=65;VT=SNP;ERATE=0.0171;LDAF=0.0357;AA=a;RSQ=0.8208;THETA=0.0003;AF=0.03;ASN_AF=0.04;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.004 GT:DS:GL 0|1:1:-5,0,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.22,-5 0|0:0.05:-0.03,-1.16,-5 0|0:0:-0.01,-1.75,-5 22 50454933 rs151245957 C G 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9883;AC=20;RSQ=0.6641;VT=SNP;ERATE=0.0017;AA=c;THETA=0.0072;LDAF=0.0138;AF=0.01;ASN_AF=0.02;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0.05:-0.18,-0.46,-2.76 0|0:0:-0.04,-1.08,-4.7 0|0:0:-0.86,-0.06,-4.7 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.49,-5 22 50454962 rs73893113 G C 100 PASS LDAF=0.0211;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8026;VT=SNP;THETA=0.0028;ERATE=0.0028;AVGPOST=0.9898;AC=39;AF=0.02;ASN_AF=0.0035;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.15,-0.53,-3.66 0|0:0:-0.02,-1.26,-5 0|0:0:-0.05,-0.99,-4.22 0|0:0:-0.03,-1.25,-5 0|0:0:-0.01,-1.79,-5 22 50454982 rs114818655 G A 100 PASS ERATE=0.0005;LDAF=0.0009;AA=g;AN=2184;THETA=0.0038;VT=SNP;AVGPOST=0.9991;RSQ=0.5266;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.07,-0.83,-3.55 0|0:0:-0.13,-0.6,-2.21 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-2.25,-5 22 50455014 . G A 100 PASS AA=g;AN=2184;RSQ=0.6464;VT=SNP;THETA=0.0086;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.04,-1.1,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.08,-0.79,-3.19 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.69,-5 22 50455049 rs115578656 C T 100 PASS LDAF=0.0757;AA=T;AN=2184;AC=154;VT=SNP;AVGPOST=0.9733;ERATE=0.0038;SNPSOURCE=LOWCOV;THETA=0.002;RSQ=0.8601;AF=0.07;ASN_AF=0.21;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0.1:-0.21,-0.47,-1.41 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.05,-0.96,-5 0|0:0:-0,-1.99,-5 22 50455066 rs117937837 A G 100 PASS ERATE=0.0005;AN=2184;VT=SNP;THETA=0.0027;RSQ=0.9084;AA=A;AC=33;SNPSOURCE=LOWCOV;LDAF=0.0161;AVGPOST=0.996;AF=0.02;ASN_AF=0.03;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.07,-0.81,-3.44 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.52,-5 22 50455283 rs9617051 C T 100 PASS 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50462499 rs144965477 T C 100 PASS AA=T;AN=2184;RSQ=0.7534;AVGPOST=0.9997;VT=SNP;THETA=0.0006;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-3.27,-5 22 50462507 rs191198574 C A 100 PASS ERATE=0.0005;AA=C;AN=2184;RSQ=0.5826;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-3.74,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.7,-5 22 50462530 rs182988403 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9989;RSQ=0.5719;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.8,-5 0|0:0.45:-2.58,-0,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.14,-5 22 50462579 rs187619729 T C 100 PASS THETA=0.0023;AA=T;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.8148;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 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AA=C;LDAF=0.1295;AN=2184;AC=282;VT=SNP;RSQ=0.9788;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9941;ERATE=0.0007;AF=0.13;ASN_AF=0.11;AMR_AF=0.14;AFR_AF=0.1;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.01,-1.62,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.06,-5 0|0:0:-0.04,-1.04,-5 22 50462661 rs137881 A G 100 PASS AA=G;AN=2184;AC=2131;LDAF=0.9676;VT=SNP;RSQ=0.7533;ERATE=0.0018;SNPSOURCE=LOWCOV;THETA=0.0016;AVGPOST=0.9803;AF=0.98;ASN_AF=1;AMR_AF=0.96;AFR_AF=0.98;EUR_AF=0.96 GT:DS:GL 1|1:2:-5,-0.9,-0.06 1|1:2:-5,-0.5,-0.16 1|1:2:-2.96,-0.48,-0.18 1|1:2:-5,-0.63,-0.12 1|1:2:-3.13,-0.48,-0.17 22 50462689 rs114200638 T C 100 PASS AA=C;THETA=0.0004;AN=2184;AC=16;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0089;ERATE=0.0006;RSQ=0.8673;AVGPOST=0.9965;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.98,-5 0|0:0:-0.07,-0.85,-5 22 50462732 rs137882 T C 100 PASS LDAF=0.2314;AA=T;AN=2184;AC=502;VT=SNP;THETA=0.0006;ERATE=0.0011;AVGPOST=0.9862;SNPSOURCE=LOWCOV;RSQ=0.9712;AF=0.23;ASN_AF=0.17;AMR_AF=0.28;AFR_AF=0.15;EUR_AF=0.3 GT:DS:GL 0|1:1:-5,-0.89,-0.06 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.2,-0.44,-1.99 0|0:0:-0.03,-1.17,-5 0|1:1.15:-0.48,-0.48,-0.48 22 50462800 rs137883 C T 100 PASS ERATE=0.0004;AVGPOST=0.9873;LDAF=0.2293;AN=2184;VT=SNP;AA=c;THETA=0.0006;AC=501;SNPSOURCE=LOWCOV;RSQ=0.9738;AF=0.23;ASN_AF=0.17;AMR_AF=0.28;AFR_AF=0.15;EUR_AF=0.3 GT:DS:GL 0|1:1:-5,-0,-2.9 0|0:0:-0.01,-1.56,-5 0|0:0:-0.03,-1.11,-5 0|0:0:-0.02,-1.41,-5 0|1:1:-0.16,-0.52,-5 22 50462805 rs137884 C T 100 PASS ERATE=0.0005;AVGPOST=0.9884;AA=C;AN=2184;AC=502;VT=SNP;LDAF=0.2292;RSQ=0.976;SNPSOURCE=LOWCOV;THETA=0.0024;AF=0.23;ASN_AF=0.17;AMR_AF=0.28;AFR_AF=0.15;EUR_AF=0.3 GT:DS:GL 0|1:1:-5,-0,-2.9 0|0:0:-0.01,-1.7,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.01,-1.71,-5 0|1:1:-2.11,-0,-5 22 50462854 rs182738833 T A 100 PASS AVGPOST=0.9994;AA=T;AN=2184;THETA=0.0075;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6057;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.97,-5 0|0:0:-0,-2.62,-5 0|0:0:-0,-2.12,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.56,-5 22 50462892 rs187685769 T C 100 PASS LDAF=0.0009;AA=T;AN=2184;THETA=0.006;VT=SNP;RSQ=0.9304;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.69,-5 0|0:0:-0,-2.08,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.93,-5 22 50463055 rs76415456 T C 100 PASS ERATE=0.0004;AC=219;AVGPOST=0.9912;AA=T;AN=2184;THETA=0.0008;LDAF=0.1014;VT=SNP;RSQ=0.9683;SNPSOURCE=LOWCOV;AF=0.1;ASN_AF=0.26;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.06,-0.91,-5 22 50463097 rs192297394 C T 100 PASS THETA=0.0009;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.6701;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0,-2.12,-5 22 50463231 rs137885 T C 100 PASS AA=C;THETA=0.0004;AN=2184;LDAF=0.4044;VT=SNP;AC=883;ERATE=0.0045;RSQ=0.9833;AVGPOST=0.9886;SNPSOURCE=LOWCOV;AF=0.4;ASN_AF=0.23;AMR_AF=0.49;AFR_AF=0.3;EUR_AF=0.56 GT:DS:GL 0|1:1:-4.4,-0,-5 0|1:1.05:-5,-0.48,-0.18 0|0:0:-0.04,-1.09,-5 1|0:1.05:-5,-0.67,-0.1 0|1:1:-5,0,-5 22 50463613 rs184633564 C T 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=c;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6745;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.91,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-3.66,-5 22 50463631 rs138423462 T C 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;RSQ=0.7431;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-3.7,-5 22 50463656 rs115305036 A G 100 PASS ERATE=0.0004;AVGPOST=0.9983;RSQ=0.8678;AN=2184;VT=SNP;AC=10;AA=A;THETA=0.0017;SNPSOURCE=LOWCOV;LDAF=0.0051;AF=0.0046;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.33,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.01,-1.83,-5 22 50463681 rs4838876 A T 100 PASS THETA=0.0021;LDAF=0.3851;AC=852;AN=2184;ERATE=0.0032;VT=SNP;RSQ=0.9656;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9768;AF=0.39;ASN_AF=0.22;AMR_AF=0.48;AFR_AF=0.29;EUR_AF=0.54 GT:DS:GL 0|1:1:-5,-0,-2.94 0|0:0.05:-0.02,-1.28,-5 0|0:0:-0.02,-1.34,-5 1|0:1:-2.1,-0.1,-0.72 0|1:1:-2.2,-0,-3.7 22 50463898 rs190312068 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;AC=8;LDAF=0.0046;VT=SNP;AVGPOST=0.9971;RSQ=0.7407;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.81,-5 0|0:0:-0.48,-0.48,-0.48 22 50463999 rs115356410 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.954;VT=SNP;AVGPOST=0.9993;LDAF=0.0064;AC=14;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.36,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.48,-0.48,-0.48 22 50464133 rs57258598 G A 100 PASS THETA=0.0002;AA=g;AN=2184;VT=SNP;AC=76;SNPSOURCE=LOWCOV;LDAF=0.0356;ERATE=0.0003;RSQ=0.9804;AVGPOST=0.9982;AF=0.03;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.06;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-3.08,-5 0|0:0:-0,-2.3,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.07,-0.86,-5 22 50464146 rs117236529 T C 100 PASS THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9979;AC=16;LDAF=0.0079;VT=SNP;RSQ=0.9047;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.68,-5 0|0:0:-0,-2.36,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.04,-1.11,-5 22 50464397 rs137886 A G 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.9976;LDAF=0.3975;VT=SNP;AC=869;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AF=0.4;ASN_AF=0.22;AMR_AF=0.49;AFR_AF=0.29;EUR_AF=0.55 GT:DS:GL 0|1:1:-1.43,-0.02,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-4,-5 1|0:1:-4.7,-0.07,-0.84 0|1:1:-0.48,-0.48,-0.48 22 50464439 rs137887 G C 100 PASS RSQ=0.9982;AA=G;AN=2184;LDAF=0.3974;VT=SNP;AC=869;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AF=0.4;ASN_AF=0.22;AMR_AF=0.49;AFR_AF=0.29;EUR_AF=0.55 GT:DS:GL 0|1:1:-4.22,-0,-5 0|0:0:-0,-2.97,-5 0|0:0:-0,-3.05,-5 1|0:1:-2.05,-0.02,-1.48 0|1:1:-5,0,-5 22 50464482 rs7288866 A G 100 PASS ERATE=0.0004;AN=2184;LDAF=0.0182;RSQ=0.9715;VT=SNP;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=39;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0.05:-0.03,-1.18,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0,-2.41,-5 22 50464489 rs148855464 C T 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=C;LDAF=0.0016;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6755;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-3.52,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-3.11,-5 22 50464496 rs137888 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.003;SNPSOURCE=LOWCOV;AC=823;RSQ=0.9974;AVGPOST=0.9984;LDAF=0.3763;AF=0.38;ASN_AF=0.2;AMR_AF=0.46;AFR_AF=0.29;EUR_AF=0.53 GT:DS:GL 0|1:1:-5,-0,-3.38 0|0:0:-0,-2.29,-5 0|0:0:-0,-4.22,-5 1|0:1:-1.89,-0.01,-2.6 0|1:1:-5,-0.03,-1.22 22 50464562 rs192615209 C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.6272;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.88,-0.06,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.01,-1.75,-5 22 50464655 rs143537508 G A 100 PASS AC=12;ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9972;THETA=0.0008;RSQ=0.8256;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0065;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.87,-5 22 50464711 rs5771305 C T 100 PASS THETA=0.0026;ERATE=0.0013;AN=2184;VT=SNP;AC=587;RSQ=0.9748;AA=c;LDAF=0.2701;SNPSOURCE=LOWCOV;AVGPOST=0.9856;AF=0.27;ASN_AF=0.54;AMR_AF=0.1;AFR_AF=0.34;EUR_AF=0.1 GT:DS:GL 0|0:0.05:-0.13,-0.58,-3.55 1|0:1.05:-4.7,-0.19,-0.44 0|0:0:-0.02,-1.29,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.07,-0.83,-5 22 50464755 rs9617052 A G 100 PASS THETA=0.0048;AC=758;AN=2184;RSQ=0.8392;VT=SNP;AVGPOST=0.8913;LDAF=0.3338;SNPSOURCE=LOWCOV;AA=N;ERATE=0.0058;AF=0.35;ASN_AF=0.19;AMR_AF=0.44;AFR_AF=0.27;EUR_AF=0.48 GT:DS:GL 0|1:1:-2.79,-0.45,-0.19 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.64,-5 1|0:0.65:-0.1,-0.68,-4.4 0|1:0.8:-0.02,-1.27,-5 22 50464834 rs9628309 C A 100 PASS AA=C;AN=2184;ERATE=0.0193;VT=SNP;AVGPOST=0.8362;SNPSOURCE=LOWCOV;THETA=0.0013;AC=217;RSQ=0.5069;LDAF=0.1591;AF=0.1;ASN_AF=0.05;AMR_AF=0.09;AFR_AF=0.09;EUR_AF=0.14 GT:DS:GL 0|0:0.3:-0.1,-0.68,-4.7 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AC A 30 PASS AC=72;RSQ=0.4558;AN=2184;VT=INDEL;THETA=0.0095;ERATE=0.0113;LDAF=0.0721;AVGPOST=0.9094;AF=0.03;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.08;EUR_AF=0.02 GT:DS:GL 0|0:0.1:0,0,0 0|0:0.15:0,0,0 0|0:0.15:0,0,0 0|0:0:0,-0.6,-8.2 0|0:0.1:0,-1.2,-14.5 22 50467326 rs55642966 C A 100 PASS RSQ=0.4785;AN=2184;VT=SNP;ERATE=0.0501;AVGPOST=0.785;AA=c;LDAF=0.2551;SNPSOURCE=LOWCOV;THETA=0.0064;AC=374;AF=0.17;ASN_AF=0.25;AMR_AF=0.13;AFR_AF=0.2;EUR_AF=0.11 GT:DS:GL 0|0:0.4:-0.48,-0.48,-0.48 0|0:0.5:-0.4,-0.22,-5 0|0:0.35:-0.48,-0.48,-0.48 0|0:0.1:-0.19,-0.46,-2.06 0|0:0:-0.01,-1.54,-5 22 50467468 . A AC 179 PASS ERATE=0.0396;AN=2184;LDAF=0.1613;VT=INDEL;THETA=0.0128;AVGPOST=0.8507;RSQ=0.5069;AC=197;AF=0.09;ASN_AF=0.18;AMR_AF=0.04;AFR_AF=0.08;EUR_AF=0.06 GT:DS:GL 0|0:0.45:0,-0.3,-3.4 0|0:0.2:0,0,0 0|0:0.25:0,0,0 0|0:0:0,-0.6,-6.8 0|0:0.3:0,0,0 22 50467597 . A AC 42 PASS AN=2184;VT=INDEL;AC=119;ERATE=0.0162;THETA=0.0059;LDAF=0.1539;RSQ=0.3123;AVGPOST=0.7824;AF=0.05;ASN_AF=0.08;AMR_AF=0.05;AFR_AF=0.06;EUR_AF=0.04 GT:DS:GL 0|0:0.25:0,-0.3,-3.4 0|1:1:0,0,0 0|0:0.2:0,0,0 0|0:0.05:0,-0.3,-3.4 0|0:0.1:0,0,0 22 50467826 rs9617054 A G 100 PASS AC=464;ERATE=0.0817;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AA=a;THETA=0.0134;RSQ=0.6568;AVGPOST=0.8699;LDAF=0.2542;AF=0.21;ASN_AF=0.3;AMR_AF=0.24;AFR_AF=0.13;EUR_AF=0.19 GT:DS:GL 1|0:1:-5,-0.03,-1.18 0|0:0.15:-0.02,-1.41,-5 0|0:0:-0,-1.94,-5 0|0:0.4:-0.31,-0.3,-1.92 0|0:0.05:-0.01,-1.52,-5 22 50467896 rs35180179 C T 100 PASS AA=C;THETA=0.0147;AN=2184;ERATE=0.0009;RSQ=0.7978;AVGPOST=0.974;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0515;AC=99;AF=0.05;ASN_AF=0.02;AMR_AF=0.06;AFR_AF=0.01;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.89,-5 0|0:0.05:-0.48,-0.48,-0.48 22 50467908 rs137895 C G 100 PASS 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LDAF=0.298;AA=C;AN=2184;RSQ=0.8158;VT=SNP;AC=649;THETA=0.0084;AVGPOST=0.8871;ERATE=0.002;SNPSOURCE=LOWCOV;AF=0.3;ASN_AF=0.38;AMR_AF=0.3;AFR_AF=0.24;EUR_AF=0.27 GT:DS:GL 0|0:0:-0.03,-1.14,-5 1|0:0.8:-0.17,-0.5,-2.75 0|0:0.3:-0.06,-0.9,-5 1|0:0.75:-0.13,-0.58,-3.4 0|0:0.1:-0.2,-0.45,-2.06 22 50467997 rs185966034 A G 100 PASS AN=2184;THETA=0.0139;AVGPOST=0.9854;VT=SNP;AC=5;SNPSOURCE=LOWCOV;LDAF=0.0096;AA=a;ERATE=0.0006;RSQ=0.3819;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.28,-5 0|0:0:-0.16,-0.52,-2.93 0|0:0:-0.05,-0.98,-5 0|0:0:-0.13,-0.6,-3.52 0|0:0:-0.48,-0.48,-0.48 22 50468016 rs151203231 C T 100 PASS AC=17;ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9952;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8109;LDAF=0.0096;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.16,-0.51,-2.89 0|0:0:-0.13,-0.58,-3.59 0|0:0:-0.13,-0.58,-3.4 0|0:0:-0.48,-0.48,-0.48 22 50468039 rs137899 G A 100 PASS ERATE=0.0023;AN=2184;THETA=0.0215;VT=SNP;LDAF=0.1909;AVGPOST=0.8879;AA=A;AC=400;SNPSOURCE=LOWCOV;RSQ=0.726;AF=0.18;ASN_AF=0.13;AMR_AF=0.17;AFR_AF=0.2;EUR_AF=0.22 GT:DS:GL 1|1:1.75:-2.2,-0.41,-0.22 0|0:0:-0.2,-0.45,-2.11 1|1:1.55:-0.48,-0.48,-0.48 0|0:0:-0.39,-0.43,-0.66 0|0:0.2:-0.48,-0.48,-0.48 22 50468078 rs137900 C T 100 PASS LDAF=0.1872;AA=C;THETA=0.0047;AN=2184;AC=378;ERATE=0.0046;AVGPOST=0.8834;VT=SNP;RSQ=0.7108;SNPSOURCE=LOWCOV;AF=0.17;ASN_AF=0.13;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.27 GT:DS:GL 1|1:1.4:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|1:1.55:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|1:0.8:-0.48,-0.48,-0.48 22 50468116 rs137901 C T 100 PASS AVGPOST=0.8911;AA=C;AN=2184;THETA=0.013;LDAF=0.7567;VT=SNP;AC=1700;RSQ=0.7871;SNPSOURCE=LOWCOV;ERATE=0.0041;AF=0.78;ASN_AF=0.86;AMR_AF=0.69;AFR_AF=0.83;EUR_AF=0.73 GT:DS:GL 1|1:1.95:-2.88,-0.45,-0.19 1|0:1:-5,-0.1,-0.68 1|1:1.9:-2.34,-0.44,-0.2 1|0:0.8:-0.48,-0.48,-0.48 0|1:1:-0.48,-0.48,-0.48 22 50468122 rs62231924 G T 100 PASS AVGPOST=0.9463;AA=T;AN=2184;VT=SNP;AC=186;ERATE=0.0019;THETA=0.0017;SNPSOURCE=LOWCOV;RSQ=0.7837;LDAF=0.0961;AF=0.09;AMR_AF=0.13;AFR_AF=0.11;EUR_AF=0.12 GT:DS:GL 0|0:0.05:-0.12,-0.62,-3.92 0|0:0:-0.05,-0.98,-5 0|0:0.15:-0.23,-0.41,-1.61 1|0:0.8:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.98 22 50468128 rs9628275 T C 100 PASS AA=C;THETA=0.0111;ERATE=0.0057;AN=2184;VT=SNP;AC=1109;LDAF=0.5007;SNPSOURCE=LOWCOV;AVGPOST=0.8814;RSQ=0.8319;AF=0.51;ASN_AF=0.32;AMR_AF=0.59;AFR_AF=0.51;EUR_AF=0.61 GT:DS:GL 1|1:1.9:-5,-0.65,-0.11 0|0:0:-0.03,-1.17,-5 1|1:1.8:-2.31,-0.43,-0.2 1|0:0.8:-0.48,-0.48,-0.48 0|1:1:-3.55,-0.48,-0.18 22 50468141 rs190683479 C T 100 PASS AVGPOST=0.9963;AA=C;AN=2184;RSQ=0.5785;VT=SNP;THETA=0.0011;LDAF=0.0034;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.03,-1.17,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.46,-3.03 22 50468220 rs115704036 C T 100 PASS AC=140;ERATE=0.0021;AA=C;RSQ=0.8005;AN=2184;VT=SNP;AVGPOST=0.9646;THETA=0.0053;SNPSOURCE=LOWCOV;LDAF=0.0711;AF=0.06;ASN_AF=0.17;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 1|0:0.85:-0.22,-0.46,-1.33 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.18,-0.47,-3.06 22 50468242 rs146387606 G A 100 PASS AA=g;AN=2184;ERATE=0.0032;VT=SNP;RSQ=0.4898;SNPSOURCE=LOWCOV;AC=27;THETA=0.0058;LDAF=0.0289;AVGPOST=0.9637;AF=0.01;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.15,-0.53,-3.12 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.7 0|0:0.05:-0.18,-0.46,-2.99 22 50468381 rs73893118 C G 100 PASS AA=C;AC=73;AN=2184;VT=SNP;THETA=0.0112;LDAF=0.0351;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9899;RSQ=0.8979;AF=0.03;AMR_AF=0.02;AFR_AF=0.14 GT:DS:GL 0|0:0:-0.35,-0.41,-0.78 0|0:0.05:-0.22,-0.46,-1.31 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.19,-0.46,-2.16 22 50468494 rs139110199 G A 100 PASS RSQ=0.3711;AA=g;AVGPOST=0.9946;AN=2184;VT=SNP;LDAF=0.0034;THETA=0.0053;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.07,-0.85,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.07,-0.81,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.12,-0.63,-3.92 22 50468601 rs183839910 T C 100 PASS AA=T;AN=2184;RSQ=0.3883;VT=SNP;THETA=0.0067;AC=9;ERATE=0.0016;AVGPOST=0.9872;LDAF=0.0085;SNPSOURCE=LOWCOV;AF=0.0041;ASN_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.83,-5 0|0:0:-0.18,-0.47,-2.34 0|0:0.05:-0.19,-0.46,-2.21 0|0:0.05:-0.18,-0.47,-2.43 0|0:0:-0.19,-0.46,-2.16 22 50468762 rs187936946 G A 100 PASS ERATE=0.0014;AA=G;AN=2184;VT=SNP;RSQ=0.2535;THETA=0.0019;AVGPOST=0.9889;LDAF=0.0063;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.33,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.1,-0.67,-5 22 50468819 rs2294374 G A 100 PASS LDAF=0.0505;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=104;VT=SNP;ERATE=0.001;THETA=0.0081;AVGPOST=0.9862;RSQ=0.8931;AF=0.05;ASN_AF=0.03;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.07,-0.81,-5 0|0:0:-0.02,-1.46,-5 22 50468873 . G A 100 PASS THETA=0.0035;AA=G;AN=2184;VT=SNP;RSQ=0.7079;AVGPOST=0.9989;SNPSOURCE=EXOME;AC=3;ERATE=0.0007;LDAF=0.0017;AF=0.0014;ASN_AF=0.0035;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.25,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-2.22,-5 0|0:0:-0,-2.13,-5 22 50468894 . G A 100 PASS ERATE=0.0004;LDAF=0.0009;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;SNPSOURCE=EXOME;RSQ=0.4766;AC=1;THETA=0.012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-3.38,-5 0|0:0:-0,-3.24,-5 22 50468907 rs738333 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;ERATE=0.0123;VT=SNP;AC=1073;THETA=0.0037;RSQ=0.8618;AVGPOST=0.8798;LDAF=0.496;AF=0.49;ASN_AF=0.22;AMR_AF=0.51;AFR_AF=0.71;EUR_AF=0.54 GT:DS:GL 1|1:2:-5,-2.67,-0 1|0:1.3:-5,-0.5,-0.17 1|1:1.85:-5,-1.03,-0.04 0|0:0.3:-0.03,-1.25,-5 0|1:1:-5,0,-5 22 50468908 . C T 100 PASS ERATE=0.0004;THETA=0.0039;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.8313;SNPSOURCE=EXOME;LDAF=0.0011;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-3.3,-5 0|0:0:-0,-3.25,-5 22 50468933 rs79298 G T 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.3297;RSQ=0.9635;THETA=0.0056;AVGPOST=0.9784;AC=721;ERATE=0.0006;AF=0.33;ASN_AF=0.19;AMR_AF=0.37;AFR_AF=0.44;EUR_AF=0.35 GT:DS:GL 1|1:2:-5,-3.13,-0 0|0:0:-0,-2.26,-5 1|0:1.05:-5,-0.01,-1.93 0|0:0:-0.01,-1.69,-5 0|1:1:-5,0,-5 22 50468977 . G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=G;AN=2184;RSQ=0.0802;VT=SNP;LDAF=0.0003;SNPSOURCE=EXOME;AC=0;THETA=0.0098;AF=0 GT:DS:GL 0|0:0:-0,-3.1,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-2.12,-5 0|0:0:-0,-3.34,-5 22 50468991 . T C 100 PASS ERATE=0.0004;AVGPOST=0.9985;RSQ=0.7911;AA=T;AN=2184;AC=6;VT=SNP;THETA=0.0011;LDAF=0.0028;SNPSOURCE=EXOME;AF=0.0027;ASN_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-3.1,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.83,-5 22 50469215 rs116119917 G T 100 PASS AC=7;RSQ=0.7602;LDAF=0.0035;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0007;ERATE=0.0006;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.21,-0.47,-1.33 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.4,-5 22 50469545 rs9308231 A C 100 PASS AN=2184;AC=523;AVGPOST=0.9797;VT=SNP;AA=A;THETA=0.0059;RSQ=0.9592;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.241;AF=0.24;ASN_AF=0.12;AMR_AF=0.25;AFR_AF=0.2;EUR_AF=0.35 GT:DS:GL 0|0:0:-0.02,-1.38,-5 0|1:0.95:-0.2,-0.48,-1.46 0|1:0.95:-0.13,-0.6,-2.2 1|0:1.05:-0.19,-0.46,-2.35 0|0:0:-0.02,-1.39,-5 22 50469578 rs2294375 G C 100 PASS THETA=0.0009;AA=G;AN=2184;LDAF=0.2414;AC=523;VT=SNP;AVGPOST=0.9826;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9633;AF=0.24;ASN_AF=0.12;AMR_AF=0.25;AFR_AF=0.2;EUR_AF=0.35 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|1:0.95:-0.21,-0.46,-1.35 1|1:1.5:-0.44,-0.46,-0.54 1|0:1.05:-2.66,-0.26,-0.34 0|0:0:-0.04,-1.11,-5 22 50469680 rs79432095 C T 100 PASS AA=C;AN=2184;AC=149;THETA=0.004;LDAF=0.0686;VT=SNP;RSQ=0.9868;AVGPOST=0.998;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.07;ASN_AF=0.03;AMR_AF=0.06;AFR_AF=0.09;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-3.15,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.01,-1.94,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.01,-1.86,-5 22 50469840 rs147505483 T C 100 PASS ERATE=0.0004;LDAF=0.0009;AA=T;AN=2184;VT=SNP;AVGPOST=0.9991;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5672;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.51,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.04,-1.11,-5 22 50469853 rs79225508 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;VT=SNP;RSQ=0.8649;LDAF=0.02;SNPSOURCE=LOWCOV;THETA=0.0016;AVGPOST=0.9926;AC=39;AF=0.02;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.01,-1.53,-5 0|0:0:-0.04,-1.11,-5 22 50469969 rs75080456 C T 100 PASS AA=C;AN=2184;AC=272;AVGPOST=0.9883;LDAF=0.1245;VT=SNP;RSQ=0.9618;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0007;AF=0.12;ASN_AF=0.26;AMR_AF=0.05;AFR_AF=0.1;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.46,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0.03,-1.19,-5 22 50470012 rs142009037 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;RSQ=0.6524;VT=SNP;THETA=0.0028;AVGPOST=0.9988;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.58,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.69,-5 22 50470022 rs150681271 C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0021;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;AC=3;RSQ=0.7184;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.1,-5 0|0:0:-0.22,-0.46,-1.34 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.75,-5 22 50470102 . G A 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0011;AC=1;RSQ=0.4628;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.01,-1.53,-5 0|0:0:-0,-2.71,-5 22 50470155 rs74771371 C T 100 PASS ERATE=0.0013;RSQ=0.6759;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0064;AC=9;AVGPOST=0.9949;AF=0.0041;ASN_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0,-3.47,-5 0|1:1.05:-3.8,-0.01,-1.92 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 22 50470162 rs145946479 C T 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;VT=SNP;LDAF=0.0034;THETA=0.0006;RSQ=0.8186;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 22 50470176 rs192975363 G C 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9233;AVGPOST=0.9997;VT=SNP;THETA=0.0012;LDAF=0.002;AC=4;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.21,-5 0|0:0:-0,-3.8,-5 0|0:0:-0.02,-1.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50470196 rs61742089 A G 100 PASS RSQ=0.8913;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;LDAF=0.0049;THETA=0.0013;AC=11;AVGPOST=0.9987;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.65,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50470215 rs61739921 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0046;AVGPOST=0.999;VT=SNP;AC=9;THETA=0.0012;RSQ=0.9211;ERATE=0.0006;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.99,-5 0|0:0:-0,-2.66,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50470291 . C T 100 PASS AA=C;RSQ=0.7337;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50470330 rs145563109 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.7337;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0006;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50470419 rs148864222 C T 100 PASS THETA=0.0009;LDAF=0.0181;AA=C;AN=2184;AC=26;ERATE=0.0093;AVGPOST=0.9812;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.5786;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 1|0:0.95:-2.36,-0,-5 0|0:0.15:-0.48,-0.17,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50470514 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;THETA=0.0012;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.01,-1.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50470516 rs11101958 C T 100 PASS THETA=0.0009;RSQ=0.9892;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9954;LDAF=0.2156;ERATE=0.0006;AC=470;AF=0.22;ASN_AF=0.17;AMR_AF=0.28;AFR_AF=0.25;EUR_AF=0.2 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.67,-5 0|0:0:0,-5,-5 0|1:1:-5,0,-5 22 50470597 rs112432406 G T 100 PASS AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;AC=58;RSQ=0.9666;SNPSOURCE=LOWCOV;THETA=0.001;LDAF=0.0272;ERATE=0.0006;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0,-3.03,-5 0|0:0:-0.29,-0.43,-0.93 0|0:0:-0.22,-0.46,-1.27 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50470616 rs142620839 C T 100 PASS THETA=0.0009;AA=C;AN=2184;AVGPOST=0.9972;LDAF=0.0043;AC=6;VT=SNP;RSQ=0.7268;ERATE=0.0008;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.0017;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.66,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 22 50470854 rs151000760 C G 100 PASS ERATE=0.0005;AA=C;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.5083;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9974;AF=0.0014;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.48,-5 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.05,-0.99,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.11,-0.65,-4.7 22 50470882 rs182471061 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0026;RSQ=0.6993;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.0023;ASN_AF=0.0035;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.12,-0.61,-3.11 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.18,-0.47,-3.08 22 50470899 rs137902 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;RSQ=0.9507;SNPSOURCE=LOWCOV;AC=209;THETA=0.0007;LDAF=0.0975;AVGPOST=0.9887;AF=0.1;ASN_AF=0.08;AMR_AF=0.1;AFR_AF=0.03;EUR_AF=0.15 GT:DS:GL 1|0:1:-2.34,-0.01,-1.67 1|0:1:-2.74,-0.46,-0.18 0|0:0:-0.13,-0.6,-2.18 0|0:0:-0.19,-0.45,-2.28 0|0:0:-0.11,-0.65,-4.7 22 50470969 rs142294653 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9972;THETA=0.0005;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0051;RSQ=0.791;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.88,-5 0|0:0:-0.07,-0.85,-5 22 50471007 rs186728238 G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0007;RSQ=0.5838;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.05,-0.97,-5 0|0:0:-0.11,-0.65,-4.7 22 50471018 rs146322976 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.5806;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AVGPOST=0.9982;LDAF=0.0017;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.04,-1.04,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.02,-1.34,-5 22 50471080 rs139069848 G A 100 PASS THETA=0.0004;RSQ=0.7112;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AF=0.0018;ASN_AF=0.0035;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.12,-0.62,-3.85 22 50471220 rs115025532 G A 100 PASS ERATE=0.0004;RSQ=0.8921;AVGPOST=0.9943;AA=G;AN=2184;LDAF=0.0208;VT=SNP;THETA=0.0045;AC=44;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.22,-0.46,-1.3 0|0:0:-0.13,-0.59,-2.13 0|0:0:-0.02,-1.41,-5 0|0:0:-0.48,-0.48,-0.48 22 50471221 rs137903 C A 100 PASS AN=2184;RSQ=0.9417;VT=SNP;AA=A;AC=1963;LDAF=0.8961;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.985;THETA=0.0003;AF=0.9;ASN_AF=0.91;AMR_AF=0.78;AFR_AF=0.97;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-1.7,-0.01 1|1:2:-0.48,-0.48,-0.48 1|1:2:-2.55,-0.33,-0.27 1|0:1.15:-5,-1.47,-0.02 0|1:1:-0.48,-0.48,-0.48 22 50471352 rs113576544 C A 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7748;AVGPOST=0.9982;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.05,-1.01,-5 0|0:0:-0.03,-1.16,-5 0|0:0.05:-0.02,-1.38,-5 22 50471415 rs192360874 G T 100 PASS ERATE=0.0005;RSQ=0.6344;LDAF=0.0016;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.52,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.13,-0.59,-3.85 0|0:0:-0,-3.18,-5 22 50471441 rs150442470 G A 100 PASS ERATE=0.0004;RSQ=0.7294;LDAF=0.0016;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.56,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.05,-0.96,-4.7 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0,-2.46,-5 22 50471442 rs742180 T G 100 PASS ERATE=0.0005;AC=677;RSQ=0.9929;AA=T;AN=2184;AVGPOST=0.9962;THETA=0.0005;VT=SNP;LDAF=0.3103;SNPSOURCE=LOWCOV;AF=0.31;ASN_AF=0.15;AMR_AF=0.32;AFR_AF=0.24;EUR_AF=0.47 GT:DS:GL 0|1:1:-4.4,-0,-5 0|1:1:-5,-0,-3.13 1|1:2:-5,-0.87,-0.06 1|0:1.15:-0.85,-0.39,-0.34 0|0:0:-0,-2.48,-5 22 50471462 rs138222939 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9979;AC=49;VT=SNP;RSQ=0.9592;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0225;THETA=0.0003;AF=0.02;AMR_AF=0.06;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.24,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-1.95,-5 22 50471468 rs742181 A G 100 PASS LDAF=0.4343;AA=G;AN=2184;RSQ=0.9927;ERATE=0.0009;AC=948;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.996;AF=0.43;ASN_AF=0.41;AMR_AF=0.37;AFR_AF=0.34;EUR_AF=0.54 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-5,-0.53,-0.15 1|1:2:-2.75,-0.49,-0.17 1|0:1.15:-5,-0.64,-0.11 0|0:0:-0,-1.98,-5 22 50471620 rs5845912 AC A 932 PASS AC=670;THETA=0.0004;RSQ=0.9742;AN=2184;ERATE=0.0009;VT=INDEL;AVGPOST=0.9854;LDAF=0.3043;AF=0.31;ASN_AF=0.15;AMR_AF=0.31;AFR_AF=0.23;EUR_AF=0.47 GT:DS:GL 0|1:1:-3.3,0,-3.9 0|1:0.95:0,0,0 1|1:2:0,0,0 1|0:1.05:0,0,0 0|0:0:0,0,0 22 50471646 rs149604497 A G 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;RSQ=0.6259;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-3.92,-5 22 50471676 . T A 100 PASS RSQ=0.876;AA=T;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:-0,-2.3,-5 0|0:0:0,-5,-5 22 50471685 rs61999353 T C 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=1;THETA=0.0007;ERATE=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.31,-5 0|0:0:0,-5,-5 22 50471715 rs144347002 T G 100 PASS AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0006;RSQ=0.7622;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50471771 rs184737868 C T 100 PASS RSQ=0.7899;AA=C;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0006;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50472007 rs148369674 T C 100 PASS RSQ=0.8839;THETA=0.0004;AA=T;AN=2184;AC=8;LDAF=0.0043;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.46,-2.21 0|0:0:-0,-2.77,-5 0|0:0:-0.01,-1.71,-5 22 50472042 rs5771309 T G 100 PASS RSQ=0.9911;THETA=0.0002;AA=T;AN=2184;AVGPOST=0.9952;AC=684;VT=SNP;LDAF=0.3147;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.31;ASN_AF=0.15;AMR_AF=0.33;AFR_AF=0.25;EUR_AF=0.47 GT:DS:GL 0|1:1:-5,-0,-4.4 0|1:1:-0.21,-0.46,-1.36 1|1:2:-0.48,-0.48,-0.48 1|0:1.15:-5,-0.93,-0.05 0|0:0:-0,-1.98,-5 22 50472130 rs56201482 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.9858;AN=2184;VT=SNP;AC=113;THETA=0.0006;AVGPOST=0.998;LDAF=0.052;SNPSOURCE=LOWCOV;AF=0.05;ASN_AF=0.03;AMR_AF=0.06;AFR_AF=0.01;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.07,-0.85,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.11,-0.64,-4 22 50472138 rs117164721 A T 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7048;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0.12,-0.63,-3.3 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.19,-0.46,-2.15 22 50472186 rs5771310 G A 100 PASS AC=270;LDAF=0.1239;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;RSQ=0.9893;ERATE=0.0007;AF=0.12;ASN_AF=0.26;AMR_AF=0.05;AFR_AF=0.1;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.13,-0.59,-3.06 0|0:0:-0.04,-1.04,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.01,-1.66,-5 22 50472335 rs187208277 G A 100 PASS AA=G;AN=2184;RSQ=0.5095;VT=SNP;AVGPOST=0.9953;ERATE=0.0011;LDAF=0.0039;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.19,-0.47,-2.34 0|0:0:-0.15,-0.54,-2.65 0|0:0:-0.15,-0.54,-3.13 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.19,-0.45,-2.14 22 50472354 rs5771311 T C 100 PASS AC=270;AA=C;AN=2184;AVGPOST=0.9947;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9808;ERATE=0.0007;LDAF=0.1238;AF=0.12;ASN_AF=0.26;AMR_AF=0.05;AFR_AF=0.1;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.14,-0.56,-2.83 0|0:0:-0.14,-0.56,-3.36 0|0:0:-0.19,-0.46,-2.36 0|0:0:-0.2,-0.45,-2.1 22 50472581 rs114490472 G A 100 PASS THETA=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.8942;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0,-4,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.01,-1.89,-5 22 50472589 rs115374295 T C 100 PASS ERATE=0.0005;THETA=0.0002;RSQ=0.9621;AVGPOST=0.9994;LDAF=0.0071;AA=T;AN=2184;VT=SNP;AC=15;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.64,-5 0|0:0:-0.01,-1.66,-5 22 50472650 rs115827953 G A 100 PASS 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G A 100 PASS RSQ=0.9049;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50472838 rs76786083 G A 100 PASS AVGPOST=0.9986;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.9149;AC=14;LDAF=0.0065;ERATE=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50472865 rs145935259 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9906;VT=SNP;THETA=0.0006;LDAF=0.0023;AC=5;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50472908 . C A 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.7933;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50473055 rs56327033 C T 100 PASS ERATE=0.0005;RSQ=0.9703;AA=C;THETA=0.0014;AN=2184;AVGPOST=0.9947;VT=SNP;LDAF=0.0687;AC=150;SNPSOURCE=LOWCOV;AF=0.07;ASN_AF=0.03;AMR_AF=0.07;AFR_AF=0.08;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.82,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.84,-5 0|0:0:-0.01,-1.69,-5 22 50473177 rs8139607 A G 100 PASS AVGPOST=0.9963;THETA=0.0004;AA=G;AN=2184;AC=957;VT=SNP;RSQ=0.9938;SNPSOURCE=LOWCOV;LDAF=0.4386;ERATE=0.0007;AF=0.44;ASN_AF=0.41;AMR_AF=0.39;AFR_AF=0.34;EUR_AF=0.54 GT:DS:GL 0|1:1:-3.52,-0,-5 0|1:1:-2.9,-0.49,-0.17 1|1:2:-0.48,-0.48,-0.48 1|0:1:-3.22,-0.02,-1.46 0|0:0:-0.06,-0.87,-5 22 50473220 rs181521385 G A 100 PASS 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AA=C;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.4368;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AVGPOST=0.9982;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.17,-0.5,-2.8 0|0:0:-0.11,-0.67,-5 22 50473396 rs5771312 G C 100 PASS ERATE=0.0005;LDAF=0.4376;AA=C;AC=952;RSQ=0.9945;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9964;SNPSOURCE=LOWCOV;AF=0.44;ASN_AF=0.41;AMR_AF=0.38;AFR_AF=0.34;EUR_AF=0.54 GT:DS:GL 0|1:1:-1.09,-0.04,-5 0|1:1:-5,-0.06,-0.9 1|1:2:-5,-0.92,-0.05 1|0:1:-5,-0,-2.85 0|0:0:-0.02,-1.33,-5 22 50473409 rs181806075 A C 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;RSQ=0.8758;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.84,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.8,-5 22 50473436 rs76728782 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0011;SNPSOURCE=LOWCOV;RSQ=0.668;AC=2;AVGPOST=0.9992;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.98,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0,-3.34,-5 22 50473523 rs113959953 G A 100 PASS ERATE=0.0005;RSQ=0.9709;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;AC=58;SNPSOURCE=LOWCOV;LDAF=0.0272;THETA=0.0007;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.04,-1.06,-5 0|0:0:-0.08,-0.8,-3.21 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.06,-0.87,-5 22 50473538 rs150734326 G A 100 PASS ERATE=0.0004;AVGPOST=0.9939;THETA=0.0002;RSQ=0.5863;AA=G;AN=2184;LDAF=0.0062;VT=SNP;AC=10;SNPSOURCE=LOWCOV;AF=0.0046;ASN_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.12,-0.62,-3.22 0|0:0:-0.04,-1.02,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.07,-0.85,-5 22 50473570 rs186423025 G C 100 PASS AA=G;AN=2184;AVGPOST=0.9981;LDAF=0.0018;VT=SNP;RSQ=0.5393;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 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100 PASS LDAF=0.0035;AA=G;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.582;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AVGPOST=0.9965;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.97,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0,-2.7,-5 0|0:0:-0.21,-0.43,-1.96 0|0:0.05:-0.85,-0.07,-5 22 50474896 rs191065692 G A 100 PASS THETA=0.0004;AA=G;AN=2184;RSQ=0.8041;AVGPOST=0.999;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.22,-0.42,-1.84 0|0:0:-0,-2.43,-5 22 50474927 rs73447938 G A 100 PASS ERATE=0.0004;RSQ=0.6404;AA=g;THETA=0.0004;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.15,-0.53,-3.15 0|0:0:-0.11,-0.64,-4.7 22 50474943 rs1010282 G A 100 PASS 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RSQ=0.9687;AA=G;AN=2184;AC=6;VT=SNP;AVGPOST=0.9998;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.06,-5 0|0:0:-0.08,-0.78,-5 0|0:0:-0.01,-1.85,-5 22 50475522 rs5771129 G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0701;AC=150;RSQ=0.9669;SNPSOURCE=LOWCOV;AVGPOST=0.9931;ERATE=0.0003;AF=0.07;ASN_AF=0.25;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.02,-1.3,-5 22 50475881 rs150239991 G A 100 PASS AC=7;LDAF=0.0041;AA=G;AN=2184;VT=SNP;AVGPOST=0.9971;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.6958;ERATE=0.0007;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.21,-5 0|0:0:-0.11,-0.66,-3.42 0|0:0:-0.13,-0.6,-3 0|0:0:-0.2,-0.45,-2.22 0|0:0:-0.48,-0.48,-0.48 22 50475931 rs138981013 A G 100 PASS AC=7;ERATE=0.0005;AVGPOST=0.9985;AN=2184;LDAF=0.0037;VT=SNP;THETA=0.003;RSQ=0.8201;AA=A;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 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A AT 73 PASS AN=2184;AVGPOST=0.988;VT=INDEL;RSQ=0.575;AC=15;ERATE=0.0028;LDAF=0.0115;THETA=0.0003;AF=0.01;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0.05:0,-0.6,-5.2 0|0:0:0,-0.3,-2.6 0|0:0:0,-0.6,-5.2 0|0:0:0,-0.6,-5.2 0|0:0:0,0,0 22 50476197 rs5771314 C T 100 PASS ERATE=0.0004;LDAF=0.0013;AA=C;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;RSQ=0.686;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-3.28,-5 0|0:0:-0,-2.55,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.02,-1.32,-5 22 50476299 rs79216706 T C 100 PASS AC=47;ERATE=0.0004;AA=T;AN=2184;AVGPOST=0.9981;LDAF=0.0219;VT=SNP;RSQ=0.9665;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0,-2.36,-5 0|0:0:-0,-3.13,-5 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.06,-0.88,-5 22 50476449 rs187733314 C T 100 PASS AA=C;RSQ=0.7414;AVGPOST=0.9994;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 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PASS ERATE=0.0004;RSQ=0.6112;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-3.14,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0,-4.22,-5 22 50479515 rs73893119 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;AC=49;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9865;LDAF=0.0228;AVGPOST=0.9992;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.13,-5 0|0:0:-0,-2.11,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50479676 . G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0001;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;RSQ=0.0698;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50479680 rs149161124 A G 100 PASS THETA=0.0002;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AC=11;ERATE=0.0003;LDAF=0.0051;AVGPOST=0.9999;AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50479753 rs190267113 C T 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50479778 rs182149350 C T 100 PASS RSQ=0.9049;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50479856 rs9617137 A C 100 PASS AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9995;AC=1032;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;LDAF=0.4729;AF=0.47;ASN_AF=0.41;AMR_AF=0.4;AFR_AF=0.48;EUR_AF=0.55 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-5,0,-5 1|1:2:-5,-5,0 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50480002 rs143311102 T C 100 PASS LDAF=0.0047;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;AC=10;AVGPOST=0.9998;ERATE=0.0003;THETA=0.0003;RSQ=0.9812;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 22 50480054 rs146846158 C T 100 PASS ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;AC=1;THETA=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50480073 rs61739686 G A 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=1;ERATE=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.66,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50480108 rs9628315 C T 100 PASS RSQ=0.9992;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.4176;AC=912;ERATE=0.0003;AF=0.42;ASN_AF=0.38;AMR_AF=0.33;AFR_AF=0.46;EUR_AF=0.46 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-5,0,-5 1|1:2:-5,-5,0 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50480361 rs77808433 A G 100 PASS THETA=0.0032;AN=2184;AC=46;RSQ=0.9326;VT=SNP;LDAF=0.0226;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.996;AF=0.02;ASN_AF=0.02;AMR_AF=0.09;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.24,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-4.1,-5 22 50480374 rs186756063 A G 100 PASS LDAF=0.0009;AN=2184;VT=SNP;RSQ=0.5861;AA=A;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.47,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-3.22,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-3.55,-5 22 50480473 rs138461957 G T 100 PASS RSQ=0.6589;AA=g;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0016;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.02,-1.26,-5 0|0:0:-0.05,-1,-5 0|0:0.05:-0.11,-0.67,-4.7 0|0:0:-0.02,-1.32,-5 22 50480577 rs75778781 C T 100 PASS AVGPOST=0.9994;AN=2184;LDAF=0.0541;VT=SNP;AA=c;AC=117;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9947;THETA=0.0003;AF=0.05;ASN_AF=0.03;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-2.18,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.11,-0.64,-4 0|0:0:-0.02,-1.27,-5 22 50480670 rs142023168 C T 100 PASS RSQ=0.8938;AN=2184;LDAF=0.0109;VT=SNP;AC=22;AA=c;AVGPOST=0.9969;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.01;ASN_AF=0.0017;AMR_AF=0.03;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-3.11,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0,-4.4,-5 22 50480724 rs150292564 A G 100 PASS ERATE=0.0005;RSQ=0.6492;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AA=a;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0017;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.06,-0.88,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.04,-1.09,-5 22 50480825 rs191872491 C T 100 PASS ERATE=0.0004;RSQ=0.4073;AN=2184;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;LDAF=0.0048;AC=3;AVGPOST=0.992;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0.09,-0.74,-4.4 0|0:0:-0.46,-0.47,-0.5 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.07,-0.81,-5 22 50480915 rs75149485 T A 100 PASS ERATE=0.0005;AVGPOST=0.9983;AN=2184;AC=240;RSQ=0.9935;VT=SNP;SNPSOURCE=LOWCOV;AA=t;THETA=0.0003;LDAF=0.1102;AF=0.11;ASN_AF=0.25;AMR_AF=0.06;AFR_AF=0.04;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.11,-0.64,-4.1 22 50480926 rs5771315 C T 100 PASS ERATE=0.0004;LDAF=0.2415;AN=2184;VT=SNP;AA=c;AC=527;SNPSOURCE=LOWCOV;AVGPOST=0.9968;THETA=0.0003;RSQ=0.9932;AF=0.24;ASN_AF=0.13;AMR_AF=0.25;AFR_AF=0.14;EUR_AF=0.39 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-5,-0,-3.59 1|1:2:-5,-0.98,-0.05 1|0:0.95:-0.1,-0.69,-4.1 0|0:0:-0.04,-1.09,-5 22 50481129 rs184116506 C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9987;LDAF=0.0012;AC=2;RSQ=0.5672;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.01,-1.64,-5 0|0:0:-0.05,-1,-5 22 50481271 rs188225544 C T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=c;RSQ=0.6409;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.89,-5 0|0:0:-0,-2.17,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-2.03,-5 22 50481406 rs137947234 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.22,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-2.35,-5 22 50481473 rs149482468 G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0,-2.06,-5 22 50481622 . GGATA G 248 PASS ERATE=0.0014;LDAF=0.0156;AN=2184;VT=INDEL;THETA=0.0005;AC=22;RSQ=0.6084;AVGPOST=0.9851;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-1.2,-31 0|0:0:0,-0.3,-7.7 0|0:0:0,0,0 0|0:0:0,-1.5,-38.5 0|0:0.15:0,0,0 22 50481673 rs5771316 T C 100 PASS AA=T;AN=2184;AVGPOST=0.9462;VT=SNP;THETA=0.0033;ERATE=0.0186;LDAF=0.374;RSQ=0.8968;SNPSOURCE=LOWCOV;AC=828;AF=0.38;ASN_AF=0.35;AMR_AF=0.29;AFR_AF=0.4;EUR_AF=0.43 GT:DS:GL 0|1:1:-4.22,-0,-5 0|1:1:-3.04,-0.01,-1.82 1|1:1.6:-4.22,-0.04,-1.11 1|0:0.65:-0.06,-0.88,-5 0|0:0.05:-0.03,-1.11,-5 22 50481966 rs183169138 C T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=c;RSQ=0.5871;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.17,-5 0|0:0:-0,-2.98,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.03,-1.25,-5 22 50482012 rs187094237 G A 100 PASS ERATE=0.0004;AA=g;THETA=0.0004;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=2;RSQ=0.6537;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.63,-5 0|0:0:-0,-2.11,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.05,-0.94,-5 22 50482126 rs5771320 C A 100 PASS AC=1025;RSQ=0.9929;AN=2184;VT=SNP;AVGPOST=0.9953;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0006;THETA=0.0024;LDAF=0.47;AF=0.47;ASN_AF=0.41;AMR_AF=0.39;AFR_AF=0.45;EUR_AF=0.56 GT:DS:GL 0|1:1:-2.35,-0.01,-1.61 0|1:1:-5,-0.04,-1.01 1|1:2:-5,-3.44,-0 1|0:1:-4.22,-0,-3.13 0|0:0:-0.04,-1.09,-5 22 50482251 rs8135472 G A 100 PASS ERATE=0.0014;AA=g;AN=2184;LDAF=0.414;THETA=0.0005;VT=SNP;RSQ=0.9928;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AC=904;AF=0.41;ASN_AF=0.38;AMR_AF=0.32;AFR_AF=0.42;EUR_AF=0.48 GT:DS:GL 0|1:1:-4.4,-0,-5 0|1:1:-5,0,-5 1|1:2:-5,-2.15,-0 1|0:1:-0.06,-0.89,-5 0|0:0:-0.03,-1.11,-5 22 50482365 rs76824072 G A 100 PASS ERATE=0.0004;AC=35;THETA=0.0002;AA=g;RSQ=0.9827;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.0164;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-3.4,-5 22 50482373 rs191866378 G A 100 PASS AVGPOST=0.9994;AA=g;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6213;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-3.4,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-3.38,-5 22 50482556 rs149774272 C T 100 PASS AN=2184;LDAF=0.0032;AVGPOST=0.9972;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;RSQ=0.5848;THETA=0.0003;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.3,-0.4,-0.98 0|0:0:-0.48,-0.48,-0.48 22 50482616 rs183677310 G A 100 PASS AVGPOST=0.9983;AA=g;THETA=0.0004;AN=2184;LDAF=0.0018;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;RSQ=0.5664;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0,-2.09,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.2,-0.44,-2.02 22 50482839 rs189515648 T C 100 PASS ERATE=0.0004;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.774;AVGPOST=0.9989;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;AA=t;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-2.89,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-2.83,-5 22 50482877 rs7289334 C T 100 PASS AC=7;ERATE=0.0004;RSQ=0.9258;LDAF=0.0035;AN=2184;THETA=0.0041;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0,-3.07,-5 0|0:0:-0,-2.49,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.02,-1.34,-5 22 50482878 rs56263616 A G 100 PASS ERATE=0.0004;LDAF=0.054;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.9938;AC=117;SNPSOURCE=LOWCOV;AA=a;THETA=0.0016;AF=0.05;ASN_AF=0.03;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-3.04,-5 0|0:0:-0,-2.04,-5 0|0:0.05:-0.03,-1.16,-5 0|0:0:-0.02,-1.34,-5 22 50482918 rs116187740 G C 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.75,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0,-2.8,-5 22 50482960 rs80101768 C T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;AC=49;AVGPOST=0.999;VT=SNP;AA=c;LDAF=0.0229;RSQ=0.9809;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.06;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-2.19,-5 0|0:0:-0,-2.22,-5 0|0:0:-0.11,-0.67,-3.92 0|0:0:-0,-3.07,-5 22 50482998 rs193017728 G C 100 PASS AC=7;RSQ=0.8116;AVGPOST=0.9983;AA=g;THETA=0.0004;AN=2184;LDAF=0.004;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0032;AMR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.24,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-3.18,-5 22 50483117 rs5771321 A G 100 PASS AC=915;AA=g;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.9921;LDAF=0.4182;AF=0.42;ASN_AF=0.38;AMR_AF=0.33;AFR_AF=0.44;EUR_AF=0.48 GT:DS:GL 0|1:1:-5,-0,-2.58 0|1:1:-5,-0,-2.42 1|1:2:-5,-2.2,-0 1|0:1:-0.16,-0.51,-2.58 0|0:0:-0,-2.95,-5 22 50483123 rs144377319 C T 100 PASS ERATE=0.0005;AVGPOST=0.9977;THETA=0.0004;AN=2184;AC=8;VT=SNP;AA=c;RSQ=0.8073;SNPSOURCE=LOWCOV;LDAF=0.0048;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.82,-5 0|0:0:-0,-2.49,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.17,-0.5,-2.5 0|0:0:-0,-3.66,-5 22 50483258 rs146616546 G A 100 PASS ERATE=0.0004;THETA=0.0015;AA=g;AN=2184;RSQ=0.6464;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.91,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.08,-0.77,-4.4 0|0:0:-0.03,-1.19,-5 0|0:0:-0.03,-1.11,-5 22 50483443 rs143416371 C T 100 PASS ERATE=0.0004;RSQ=0.6603;THETA=0.0004;AN=2184;VT=SNP;AA=c;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.11,-0.64,-2.52 0|0:0:-0.15,-0.55,-2.74 0|0:0:-0.06,-0.89,-5 0|0:0:-0.02,-1.42,-5 22 50483553 rs148376900 T C 100 PASS THETA=0.0004;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AA=t;RSQ=0.4483;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.74,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.18,-0.47,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-2.49,-5 22 50483556 rs140665890 G C 100 PASS ERATE=0.0004;AVGPOST=1;LDAF=0.0041;AA=g;AN=2184;THETA=0.0008;VT=SNP;AC=9;RSQ=0.9946;SNPSOURCE=LOWCOV;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-3.04,-5 0|0:0:-0,-2.69,-5 0|0:0:-0,-2.75,-5 22 50483594 rs185699880 C T 100 PASS ERATE=0.0004;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;AA=c;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7282;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.4,-5 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.21,-0.47,-1.35 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-3.92,-5 22 50483671 rs145787783 C T 100 PASS ERATE=0.0004;AVGPOST=0.9986;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;RSQ=0.488;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.47,-5 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G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=g;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.6259;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50483826 . G C 100 PASS AVGPOST=0.9986;AA=g;AN=2184;RSQ=0.5633;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0014;THETA=0.0007;AC=2;ERATE=0.0007;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.3,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50483850 rs8138121 T C 100 PASS ERATE=0.0004;AVGPOST=0.9986;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9972;AC=544;LDAF=0.2487;AA=t;AF=0.25;ASN_AF=0.13;AMR_AF=0.26;AFR_AF=0.14;EUR_AF=0.41 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-5,-0,-3.74 1|1:2:-5,-4.1,-0 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50483889 rs8137790 A G 100 PASS AC=1035;AVGPOST=0.9963;AA=g;AN=2184;RSQ=0.9939;VT=SNP;THETA=0.0006;LDAF=0.4737;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.47;ASN_AF=0.41;AMR_AF=0.4;AFR_AF=0.47;EUR_AF=0.56 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-0.09,-0.73,-3.04 1|1:2:-4.7,-0.47,-0.18 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50483926 rs8138277 T C 100 PASS AVGPOST=0.9957;AN=2184;VT=SNP;RSQ=0.9928;AA=c;LDAF=0.4737;SNPSOURCE=LOWCOV;AC=1036;ERATE=0.0006;THETA=0.0003;AF=0.47;ASN_AF=0.41;AMR_AF=0.4;AFR_AF=0.47;EUR_AF=0.56 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-0.48,-0.48,-0.48 1|1:2:-2.8,-0.5,-0.17 1|0:1:-1.13,-0.03,-5 0|0:0:-0,-2.43,-5 22 50484005 rs190571135 G A 100 PASS ERATE=0.0005;AA=g;AN=2184;AVGPOST=0.9981;VT=SNP;THETA=0.0006;RSQ=0.6122;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.03,-1.17,-5 22 50484041 rs138708333 G A 100 PASS AA=g;THETA=0.0004;AN=2184;LDAF=0.0037;VT=SNP;ERATE=0.0008;AVGPOST=0.9948;SNPSOURCE=LOWCOV;AC=4;RSQ=0.4131;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.17,-0.5,-2.5 0|0:0:-0.05,-0.93,-5 22 50484089 rs142768749 C T 100 PASS RSQ=0.6829;THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;AA=c;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.8,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.05,-1,-4.22 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.62,-5 22 50484261 . G A 100 PASS ERATE=0.0004;RSQ=0.7063;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.36,-5 0|0:0:-0,-3.55,-5 22 50484271 rs147401016 G A 100 PASS AC=17;ERATE=0.0005;RSQ=0.8886;LDAF=0.0086;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;AF=0.01;ASN_AF=0.03 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.11,-5 0|0:0:-0,-3.85,-5 22 50484329 rs17013076 C T 100 PASS AC=61;ERATE=0.0004;RSQ=0.9902;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;LDAF=0.0279;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0,-3.62,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 22 50484343 . G T 100 PASS THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.7571;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 22 50484345 . C T 100 PASS RSQ=0.7559;AA=C;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;ERATE=0.0003;AVGPOST=0.9995;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50484388 . G T 100 PASS ERATE=0.0005;LDAF=0.0009;AA=G;AN=2184;RSQ=0.5826;THETA=0.0005;VT=SNP;AVGPOST=0.9991;SNPSOURCE=EXOME;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.82,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.73,-5 0|0:0:-0,-3.04,-5 22 50484405 rs17013078 G A 100 PASS AC=61;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9977;VT=SNP;ERATE=0.0003;LDAF=0.0279;AVGPOST=0.9999;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-1.95,-5 22 50484477 rs138056713 G A 100 PASS ERATE=0.0004;RSQ=0.6829;AA=G;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.16,-5 0|0:0:-0.02,-1.33,-5 22 50484574 rs6010246 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.9753;VT=SNP;AC=117;SNPSOURCE=LOWCOV;AVGPOST=0.9968;THETA=0.0007;LDAF=0.0548;AF=0.05;ASN_AF=0.03;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.64,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.07,-0.82,-3.34 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.12,-5 22 50484622 rs181811374 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0018;THETA=0.0005;VT=SNP;RSQ=0.7864;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9992;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.96,-5 0|0:0:-0.22,-0.46,-1.33 0|0:0:-0.15,-0.56,-1.93 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.11,-0.66,-5 22 50484782 rs149535814 G A 100 PASS ERATE=0.0004;LDAF=0.0013;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;RSQ=0.3993;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.47,-2.45 0|0:0.05:-0.22,-0.46,-1.3 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.03,-1.13,-5 22 50484823 rs116275587 G A 100 PASS AC=12;RSQ=0.7673;AA=G;AN=2184;AVGPOST=0.9944;VT=SNP;THETA=0.0017;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.008;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.05,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.59,-5 22 50484824 rs144095314 C T 100 PASS ERATE=0.0005;LDAF=0.0141;AA=C;AN=2184;RSQ=0.8615;AC=26;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9949;AF=0.01;ASN_AF=0.05 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.02,-1.26,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0.01,-1.84,-5 22 50484836 rs186002530 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.8519;AN=2184;AVGPOST=0.9997;THETA=0.0008;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0.16,-0.52,-3.06 0|0:0:-0,-2.13,-5 22 50484856 rs148694657 G A 100 PASS THETA=0.0009;ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;AC=9;RSQ=0.8986;SNPSOURCE=LOWCOV;LDAF=0.0045;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-3.28,-5 0|0:0:-0,-2.21,-5 0|0:0:-0.11,-0.64,-4.4 0|0:0:-0,-3.44,-5 22 50484893 rs137905 T C 100 PASS ERATE=0.0004;AA=C;AC=1950;RSQ=0.9768;AN=2184;VT=SNP;LDAF=0.8927;SNPSOURCE=LOWCOV;THETA=0.0042;AVGPOST=0.994;AF=0.89;ASN_AF=0.92;AMR_AF=0.78;AFR_AF=0.94;EUR_AF=0.89 GT:DS:GL 1|1:2:-5,-2.24,-0 1|1:2:-5,-3.7,-0 1|1:2:-5,-1.51,-0.01 1|0:1:-0.19,-0.47,-2.08 0|1:1:-4.22,-0,-5 22 50484955 rs188466598 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AC=2;RSQ=0.5311;AVGPOST=0.9982;LDAF=0.0017;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.23,-0.46,-1.22 0|0:0:-0.03,-1.14,-5 0|0:0:-0.48,-0.48,-0.48 22 50485026 rs932330 A C 100 PASS AA=C;AN=2184;RSQ=0.9638;VT=SNP;ERATE=0.005;SNPSOURCE=LOWCOV;AC=1036;THETA=0.0016;LDAF=0.4755;AVGPOST=0.978;AF=0.47;ASN_AF=0.41;AMR_AF=0.39;AFR_AF=0.48;EUR_AF=0.56 GT:DS:GL 0|1:1:-1.68,-0.01,-5 0|1:1:-0.48,-0.48,-0.48 1|1:1.95:-3.02,-0.48,-0.17 1|0:1:-0.65,-0.11,-4 0|0:0.05:-0.19,-0.46,-2.15 22 50485043 rs181270675 C T 100 PASS AA=C;THETA=0.0035;RSQ=0.4391;AN=2184;AVGPOST=0.9947;LDAF=0.0037;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.27,-0.4,-1.21 0|0:0:-0.11,-0.64,-4.1 22 50485146 rs55893511 C T 100 PASS AA=C;RSQ=0.5342;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.9811;LDAF=0.0167;SNPSOURCE=LOWCOV;AC=19;THETA=0.0003;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0.05:-0.13,-0.59,-3.74 0|0:0:-0.32,-0.43,-0.84 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.89,-5 0|0:0:-0.18,-0.46,-2.99 22 50485260 rs184952677 G C 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;AC=9;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.6636;AVGPOST=0.995;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.15,-0.53,-2.72 0|0:0:-0.18,-0.47,-3.08 22 50485298 rs191072413 C G 100 PASS AA=C;THETA=0.0014;AN=2184;RSQ=0.7307;LDAF=0.0054;VT=SNP;AC=10;AVGPOST=0.9964;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0046;ASN_AF=0.0035;AMR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.92,-5 0|0:0:-0.18,-0.47,-3.07 22 50485341 rs6010247 T C 100 PASS AA=T;AN=2184;THETA=0.0008;VT=SNP;AC=118;SNPSOURCE=LOWCOV;ERATE=0.0015;RSQ=0.9364;LDAF=0.058;AVGPOST=0.992;AF=0.05;ASN_AF=0.03;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.73,-5 0|0:0:-0.47,-0.18,-2.74 22 50485571 . G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;LDAF=0.0015;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;RSQ=0.9134;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-3.38,-5 22 50485701 rs143557157 G C 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=8;AVGPOST=0.9996;VT=SNP;LDAF=0.0038;THETA=0.0007;RSQ=0.9544;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50485718 rs59727397 A C 100 PASS AVGPOST=1;LDAF=0.0009;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0011;AA=A;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50485793 rs137906 T C 100 PASS RSQ=0.9934;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.8536;AC=1866;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0022;AF=0.85;ASN_AF=0.92;AMR_AF=0.78;AFR_AF=0.76;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-5,0 1|1:2:-5,-5,0 1|0:1:-5,-0.01,-1.83 0|1:1:-5,0,-5 22 50485819 rs146310696 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.8626;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0012;AC=3;AF=0.0014;ASN_AF=0.0035;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.11,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 22 50485826 rs75102543 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0047;LDAF=0.0047;AN=2184;AVGPOST=0.9997;VT=SNP;AC=10;RSQ=0.9681;SNPSOURCE=LOWCOV;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.16,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50485844 rs139603468 G A 100 PASS AC=12;ERATE=0.0004;RSQ=0.9628;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0055;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.67,-5 0|0:0.05:-0.03,-1.19,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 22 50485982 rs56043892 G C 100 PASS AVGPOST=0.9986;AA=G;AN=2184;VT=SNP;LDAF=0.0537;AC=116;SNPSOURCE=LOWCOV;RSQ=0.9888;ERATE=0.0003;THETA=0.0036;AF=0.05;ASN_AF=0.03;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0.05:-0.12,-0.63,-3.27 0|0:0:-0.21,-0.47,-1.33 0|0:0:-0.01,-1.7,-5 0|0:0:-0.01,-1.69,-5 22 50485987 rs187383278 G A 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.7557;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;THETA=0.001;AVGPOST=0.9987;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.12,-0.61,-3.07 0|0:0:-0.08,-0.78,-3.92 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.7,-5 22 50486017 rs75696883 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.9825;LDAF=0.1141;VT=SNP;THETA=0.0011;AVGPOST=0.9953;SNPSOURCE=LOWCOV;AC=246;AF=0.11;ASN_AF=0.25;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.05,-0.93,-5 22 50486420 rs192064624 G A 100 PASS AC=7;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0038;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.5749;AVGPOST=0.9958;AF=0.0032;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.14,-0.57,-3.47 0|0:0:-0.12,-0.63,-3.47 0|0:0:-0.21,-0.43,-2.02 0|0:0:-0.48,-0.48,-0.48 22 50486449 rs182946597 C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0006;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9941;ERATE=0.0007;RSQ=0.4945;LDAF=0.0045;AF=0.0023;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.07,-0.83,-5 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.07,-0.83,-5 0|0:0:-0.18,-0.47,-3.08 22 50486592 rs137907 T C 100 PASS ERATE=0.0004;AVGPOST=0.9936;AA=C;LDAF=0.9875;AN=2184;AC=2157;VT=SNP;RSQ=0.8057;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.99;ASN_AF=1;AMR_AF=0.99;AFR_AF=1;EUR_AF=0.97 GT:DS:GL 1|1:2:-5,-1.42,-0.02 1|1:1.95:-5,-2.18,-0 1|1:2:-5,-3.19,-0 1|1:2:-5,-1.38,-0.02 1|1:2:-5,-2.81,-0 22 50486689 rs5771323 G C 100 PASS ERATE=0.0004;RSQ=0.9934;AA=C;AC=516;AN=2184;LDAF=0.237;VT=SNP;THETA=0.0006;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.28;AMR_AF=0.16;AFR_AF=0.35;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.06,-0.87,-5 22 50486732 rs112009312 T A 100 PASS AC=7;LDAF=0.0036;RSQ=0.9213;AA=T;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.79,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0,-3.15,-5 22 50486798 rs73893120 T C 100 PASS ERATE=0.0004;THETA=0.0002;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;LDAF=0.0096;AC=21;RSQ=0.9172;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0.05:-0.1,-0.69,-4.7 0|0:0:-0,-2.59,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.02,-1.35,-5 22 50486811 rs146605104 A T 100 PASS AC=17;ERATE=0.0004;AN=2184;THETA=0.006;VT=SNP;RSQ=0.9352;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.0081;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0,-2.56,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.01,-1.62,-5 22 50486849 rs80223445 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9981;LDAF=0.0525;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9854;AC=114;THETA=0.0003;AF=0.05;ASN_AF=0.03;AMR_AF=0.07;AFR_AF=0.01;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.01,-1.53,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.02,-1.38,-5 22 50486855 rs141017769 C T 100 PASS ERATE=0.0004;LDAF=0.0013;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AC=2;RSQ=0.7217;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.02,-1.3,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.03,-1.13,-5 22 50486869 rs149828213 G A 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=G;AN=2184;RSQ=0.8141;VT=SNP;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.07,-0.83,-4.22 0|0:0:-0.09,-0.74,-4.7 0|0:0:-0.09,-0.73,-5 22 50487191 rs145849189 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=9;AVGPOST=0.9973;SNPSOURCE=LOWCOV;RSQ=0.7726;LDAF=0.0045;AF=0.0041;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0.25:-1.66,-0.01,-5 0|0:0:-0,-3.11,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0,-2.74,-5 22 50487255 rs149013540 G A 100 PASS THETA=0.0023;AA=G;AN=2184;LDAF=0.0032;AC=6;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.7665;AVGPOST=0.9982;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.18,-0.47,-2.14 0|0:0:-0.01,-1.6,-5 22 50487262 rs145747152 C A 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=C;AN=2184;LDAF=0.004;AC=8;VT=SNP;THETA=0.0028;RSQ=0.8708;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.13 0|0:0:-0.04,-1.09,-5 22 50487314 rs137908 A C 100 PASS AA=C;AN=2184;RSQ=0.9536;THETA=0.0005;VT=SNP;AC=1850;LDAF=0.8434;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9824;AF=0.85;ASN_AF=0.92;AMR_AF=0.77;AFR_AF=0.74;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-1.45,-0.02 1|1:1.9:-0.4,-0.45,-0.62 1|1:1.95:-0.48,-0.48,-0.48 1|0:1:-5,-0,-4.7 0|1:1:-3.58,-0.48,-0.18 22 50487315 rs137909 G C 100 PASS AA=C;AN=2184;RSQ=0.9439;AVGPOST=0.9783;VT=SNP;THETA=0.0006;AC=1847;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.841;AF=0.85;ASN_AF=0.92;AMR_AF=0.77;AFR_AF=0.74;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-1.46,-0.02 1|1:1.9:-0.17,-0.51,-1.73 1|1:1.95:-0.48,-0.48,-0.48 1|0:1:-5,-0,-4.7 0|1:1:-3.58,-0.48,-0.18 22 50487316 rs137910 G C 100 PASS AVGPOST=0.977;AA=C;AN=2184;ERATE=0.0009;VT=SNP;AC=1724;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.9505;LDAF=0.7846;AF=0.79;ASN_AF=0.89;AMR_AF=0.7;AFR_AF=0.7;EUR_AF=0.81 GT:DS:GL 1|1:2:-5,-1.47,-0.01 1|1:1.9:-0.26,-0.44,-1.09 1|1:1.95:-0.48,-0.48,-0.48 1|0:1:-5,-0,-3.8 0|1:1.05:-3.58,-0.48,-0.18 22 50487453 rs138687986 G A 100 PASS THETA=0.0026;AA=G;AN=2184;VT=SNP;RSQ=0.4749;LDAF=0.0023;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0,-2.19,-5 0|0:0:-0,-4.22,-5 22 50487567 rs137911 T C 100 PASS AA=C;AN=2184;AVGPOST=0.9952;ERATE=0.0009;THETA=0.0008;VT=SNP;AC=1874;SNPSOURCE=LOWCOV;RSQ=0.9854;LDAF=0.8572;AF=0.86;ASN_AF=0.92;AMR_AF=0.78;AFR_AF=0.78;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-5,0 1|1:1.95:-5,-0.79,-0.08 1|1:1.95:-2.8,-0.5,-0.17 1|0:1:-5,0,-5 0|1:1:-5,0,-5 22 50487609 rs187585851 G A 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0006;RSQ=0.6122;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50487660 . C T 100 PASS AA=C;RSQ=0.7959;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50487661 rs141219698 G A 100 PASS AC=7;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0032;THETA=0.0005;VT=SNP;RSQ=0.9865;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50487683 rs113127908 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9953;AVGPOST=0.9997;THETA=0.0008;LDAF=0.0275;VT=SNP;AC=60;ERATE=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50487740 . C T 100 PASS RSQ=0.9405;AA=C;AN=2184;THETA=0.0008;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50487790 rs115120621 T C 100 PASS AC=7;THETA=0.0015;LDAF=0.0033;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;RSQ=0.9799;VT=SNP;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50487828 rs191656346 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7073;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50487841 rs116695156 C T 100 PASS ERATE=0.0004;LDAF=0.0024;THETA=0.0026;RSQ=0.9469;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50487957 rs146970039 C T 100 PASS AA=C;THETA=0.0014;LDAF=0.0042;AN=2184;VT=SNP;RSQ=0.4464;ERATE=0.0018;SNPSOURCE=LOWCOV;AVGPOST=0.9941;AC=3;AF=0.0014;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0.17,-0.52,-1.77 0|0:0:-0.01,-1.85,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-3.28,-5 22 50488045 rs141716888 G A 100 PASS ERATE=0.0004;LDAF=0.0009;AVGPOST=0.9994;AA=G;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.7195;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.01,-1.49,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-2.29,-5 22 50488130 rs78897650 G A 100 PASS ERATE=0.0005;AVGPOST=0.9985;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4723;LDAF=0.0012;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.57,-5 22 50488138 rs182707571 A G 100 PASS ERATE=0.0005;AN=2184;THETA=0.0005;AVGPOST=0.999;LDAF=0.001;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5127;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.88,-5 22 50488153 rs137912 T C 100 PASS ERATE=0.0004;RSQ=0.9687;AA=C;LDAF=0.9023;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9925;AC=1974;AF=0.9;ASN_AF=0.92;AMR_AF=0.8;AFR_AF=0.98;EUR_AF=0.89 GT:DS:GL 1|1:2:-5,-1.95,-0 1|1:2:-5,-1.82,-0.01 1|0:1.15:-5,-0.12,-0.63 1|0:1:-5,-0,-3.74 0|1:1:-5,-0,-3.3 22 50488185 rs116551533 G A 100 PASS AC=61;ERATE=0.0004;THETA=0.0026;RSQ=0.9909;LDAF=0.0281;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.4,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.01,-1.83,-5 22 50488336 rs187437488 G A 100 PASS ERATE=0.0004;RSQ=0.6495;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.68,-5 0|0:0:-0,-2.22,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.79,-5 22 50488366 rs138632762 C T 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=C;AN=2184;VT=SNP;THETA=0.0025;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4526;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.3,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.19,-0.47,-2.25 0|0:0:-0,-1.98,-5 0|0:0:-0,-4.22,-5 22 50488502 . C T 100 PASS AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0016;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.97,-5 0|0:0:0,-5,-5 22 50488527 rs114409591 C T 100 PASS AC=7;ERATE=0.0004;RSQ=0.9251;AA=C;AVGPOST=0.9994;LDAF=0.0035;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0007;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50488528 . G A 100 PASS THETA=0.0021;AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50488533 rs192707644 G T 100 PASS THETA=0.0021;ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;AC=1;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50488547 rs117334902 G A 100 PASS ERATE=0.0005;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=37;VT=SNP;AVGPOST=0.9971;RSQ=0.9321;LDAF=0.017;AF=0.02;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50488562 rs184510799 C T 100 PASS ERATE=0.0005;RSQ=0.8684;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;VT=SNP;AVGPOST=0.9991;LDAF=0.0029;THETA=0.0012;AF=0.0027;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50488628 . C T 100 PASS AA=C;THETA=0.0022;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.91,-5 0|0:0:0,-5,-5 22 50488642 rs80098710 G A 100 PASS AC=7;RSQ=0.9159;LDAF=0.0033;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0013;ERATE=0.0003;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 22 50488652 rs190576024 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;THETA=0.0005;LDAF=0.001;VT=SNP;RSQ=0.8474;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 22 50488715 rs144203289 T C 100 PASS THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.7794;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.01,-5 0|0:0:0,-5,-5 22 50488743 rs192619614 C A 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;RSQ=0.8787;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-4.4,-5 22 50488776 rs115295105 T C 100 PASS AC=7;ERATE=0.0005;AA=T;AN=2184;LDAF=0.0032;VT=SNP;THETA=0.0046;RSQ=0.9304;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.17,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-3.1,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.09,-5 22 50488985 rs144263791 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;RSQ=0.6043;VT=SNP;THETA=0.003;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.08,-0.77,-3.92 0|0:0:-0.01,-1.71,-5 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0,-2.32,-5 22 50488995 rs8143094 C A 100 PASS THETA=0.0026;AVGPOST=0.9745;AA=C;AN=2184;RSQ=0.9493;VT=SNP;AC=514;LDAF=0.233;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.24;ASN_AF=0.14;AMR_AF=0.25;AFR_AF=0.11;EUR_AF=0.39 GT:DS:GL 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ERATE=0.0004;THETA=0.0047;AA=T;AN=2184;RSQ=0.9472;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=11;LDAF=0.005;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.08,-5 0|0:0:-0,-3.15,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.1,-5 22 50489846 rs146933699 T C 100 PASS RSQ=0.8338;AA=T;AN=2184;THETA=0.0041;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.01,-1.85,-5 22 50489855 rs180822610 C T 100 PASS AA=C;THETA=0.0035;AN=2184;RSQ=0.7082;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0,-3.4,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.01,-1.55,-5 22 50489945 rs137914 T G 100 PASS AC=370;ERATE=0.0014;AA=T;AN=2184;VT=SNP;AVGPOST=0.9855;THETA=0.0059;SNPSOURCE=LOWCOV;RSQ=0.961;LDAF=0.1701;AF=0.17;ASN_AF=0.33;AMR_AF=0.1;AFR_AF=0.08;EUR_AF=0.14 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AA=T;AN=2184;ERATE=0.0068;VT=SNP;THETA=0.0247;LDAF=0.1011;SNPSOURCE=LOWCOV;RSQ=0.8788;AVGPOST=0.9673;AC=206;AF=0.09;ASN_AF=0.27;AMR_AF=0.06;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-3.09,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0,-3.66,-5 22 50490942 rs73429531 C T 100 PASS RSQ=0.9473;AA=T;AN=2184;AC=104;VT=SNP;THETA=0.0161;SNPSOURCE=LOWCOV;AVGPOST=0.9931;ERATE=0.0006;LDAF=0.0497;AF=0.05;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.14;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-3.36,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.02,-5 0|1:1:-5,0,-5 22 50490960 rs139757047 C T 100 PASS AA=C;LDAF=0.0035;AN=2184;THETA=0.0189;AVGPOST=0.9979;ERATE=0.0009;AC=6;VT=SNP;RSQ=0.7443;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.01;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.74,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.81,-5 0|0:0:-0,-2.45,-5 22 50491050 rs149387008 A C 100 PASS AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;THETA=0.0226;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7571;AF=0.0005;ASN_AF=0.0017 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100 PASS ERATE=0.0004;AVGPOST=0.9933;AA=G;AN=2184;THETA=0.0038;AC=262;RSQ=0.9767;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.121;AF=0.12;ASN_AF=0.01;AMR_AF=0.12;AFR_AF=0.04;EUR_AF=0.26 GT:DS:GL 1|0:1:-1.44,-0.02,-5 0|0:0:-0,-4.1,-5 0|1:1:-5,-0,-3.74 1|0:1:-5,-0,-2.53 0|0:0:-0,-2.03,-5 22 50492235 rs7290681 G A 100 PASS ERATE=0.0004;LDAF=0.5371;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1173;THETA=0.0007;AVGPOST=0.9974;RSQ=0.9962;AF=0.54;ASN_AF=0.67;AMR_AF=0.46;AFR_AF=0.76;EUR_AF=0.33 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 1|1:2:-5,-2.84,-0 0|0:0:-0,-2.29,-5 0|0:0:-0,-1.97,-5 0|1:1:-5,-0,-4.7 22 50492263 rs185340378 T C 100 PASS RSQ=0.719;AA=T;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9988;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.1,-5 0|0:0:-0,-2.31,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.01,-1.57,-5 22 50492310 rs116552858 C T 100 PASS 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50492545 rs116079464 G A 100 PASS THETA=0.0004;RSQ=0.9843;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-3.03,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.12,-5 22 50492558 rs142693715 A C 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-2.84,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0,-2.91,-5 22 50492662 rs143231366 C A 100 PASS THETA=0.0065;ERATE=0.0004;AVGPOST=0.9986;AA=C;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.6861;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.48,-5 0|0:0:-0,-3.02,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.79,-5 22 50492663 rs116347178 C A 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=6;VT=SNP;THETA=0.0006;AVGPOST=0.9998;LDAF=0.0028;SNPSOURCE=LOWCOV;RSQ=0.97;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 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AA=T;AN=2184;VT=SNP;LDAF=0.0212;AC=44;RSQ=0.9195;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0006;AVGPOST=0.9961;AF=0.02;ASN_AF=0.04;AMR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.04,-5 0|0:0:-0.24,-0.41,-1.52 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.58,-3.42 0|1:1:-0.24,-0.41,-1.48 22 50494061 rs181769847 G A 100 PASS ERATE=0.0005;RSQ=0.805;AA=G;AN=2184;VT=SNP;THETA=0.0019;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9992;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.03,-5 0|0:0:-0.24,-0.4,-1.51 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.64,-4 0|0:0:-0.24,-0.41,-1.49 22 50494257 rs114757004 G T 100 PASS AA=g;AN=2184;VT=SNP;AC=22;AVGPOST=0.9998;LDAF=0.0101;RSQ=0.9907;SNPSOURCE=LOWCOV;THETA=0.0029;ERATE=0.0003;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-2.96,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.04,-1.08,-5 22 50494531 rs137917 A T 100 PASS ERATE=0.0004;THETA=0.0015;AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.8138;AA=a;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 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THETA=0.0015;AA=C;AN=2184;RSQ=0.5736;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.69,-5 22 50495375 rs73429542 G A 100 PASS ERATE=0.0004;RSQ=0.5412;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-2.99,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-3.36,-5 22 50495505 rs114256716 G A 100 PASS ERATE=0.0004;LDAF=0.0027;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;THETA=0.0017;AC=5;SNPSOURCE=LOWCOV;RSQ=0.8449;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.51,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.02,-1.38,-5 22 50495523 . T TG 140 PASS RSQ=0.4253;LDAF=0.0191;AC=18;AN=2184;ERATE=0.0054;VT=INDEL;THETA=0.0008;AVGPOST=0.9733;AF=0.01;ASN_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0.1:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-7.1 0|0:0:0,-0.6,-7.2 0|0:0:0,0,0 22 50495544 . 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GA G 75 PASS AVGPOST=0.9426;AN=2184;ERATE=0.0078;VT=INDEL;AC=65;LDAF=0.0514;THETA=0.0059;RSQ=0.5524;AF=0.03;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.09;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.2,-19.2 0|0:0:0,0,0 0|0:0:0,-0.3,-4.8 0|0:0:0,0,0 0|0:0:0,0,0 22 50496179 rs73183363 T C 100 PASS AA=T;AN=2184;AC=390;VT=SNP;THETA=0.003;RSQ=0.9519;SNPSOURCE=LOWCOV;ERATE=0.0022;AVGPOST=0.9803;LDAF=0.1794;AF=0.18;ASN_AF=0.07;AMR_AF=0.15;AFR_AF=0.42;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.01,-1.77,-5 1|0:1:-2.22,-0.01,-1.57 0|0:0:-0,-1.98,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.43,-5 22 50496252 rs192608133 G C 100 PASS AA=G;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9998;RSQ=0.9135;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.89,-5 0|0:0:-0,-2.71,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.9,-5 22 50496529 rs150893080 C T 100 PASS 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0|0:0:-0,-3.1,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.06,-0.88,-5 22 50498764 rs142171547 C T 100 PASS ERATE=0.0004;RSQ=0.4989;AA=C;AN=2184;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0016;AVGPOST=0.9987;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.1,-0.68,-5 22 50498869 rs2294384 G A 100 PASS LDAF=0.0298;RSQ=0.9707;AN=2184;VT=SNP;AA=A;AC=64;SNPSOURCE=LOWCOV;AVGPOST=0.9978;THETA=0.0007;ERATE=0.0003;AF=0.03;ASN_AF=0.04;AMR_AF=0.04;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|1:1:-5,0,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.06,-0.91,-5 22 50498870 rs180844259 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.6083;AVGPOST=0.9989;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.97,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.06,-0.91,-5 22 50498883 rs151213319 C A 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.002;RSQ=0.5038;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.01,-1.47,-5 0|0:0.05:-0.04,-1.03,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.03,-1.14,-5 22 50498885 rs9628320 G A 100 PASS ERATE=0.0005;RSQ=0.9779;AVGPOST=0.9912;AA=G;AN=2184;VT=SNP;LDAF=0.1539;SNPSOURCE=LOWCOV;AC=335;THETA=0.0003;AF=0.15;ASN_AF=0.01;AMR_AF=0.18;AFR_AF=0.05;EUR_AF=0.32 GT:DS:GL 1|0:1:-5,-0,-4.4 0|0:0:-0.03,-1.19,-5 0|1:1.1:-4.7,-0.19,-0.45 1|0:1:-4.4,-0,-2.74 0|0:0:-0.03,-1.13,-5 22 50498962 rs183917452 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7354;THETA=0.0024;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.75,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.03,-1.13,-5 22 50499021 rs11704648 A C 100 PASS ERATE=0.0004;RSQ=0.9911;AC=245;AN=2184;AVGPOST=0.9979;THETA=0.0005;VT=SNP;AA=A;LDAF=0.1125;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.03,-1.22,-5 1|0:0.95:-0.02,-1.33,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-5 22 50499042 rs117474715 C G 100 PASS THETA=0.0015;AA=C;AN=2184;AC=46;RSQ=0.9879;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0213;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.67,-5 22 50499059 rs189382860 G A 100 PASS ERATE=0.0004;LDAF=0.0009;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.5542;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-5 22 50499075 rs41283491 G A 100 PASS AVGPOST=0.9963;LDAF=0.1137;AA=G;AN=2184;RSQ=0.9861;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0006;AC=247;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|1:0.55:-0.03,-1.13,-5 1|0:1:-5,-1,-0.05 0|0:0:-0.01,-1.49,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50499137 rs182210602 C T 100 PASS AA=C;AN=2184;THETA=0.0005;RSQ=0.2977;AVGPOST=0.9871;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0022;AC=2;LDAF=0.0075;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0.24,-0.41,-1.52 22 50499152 rs41283492 T G 100 PASS RSQ=0.4263;LDAF=0.0066;AA=T;AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9915;ERATE=0.0016;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.13 0|0:0.1:-0.48,-0.48,-0.48 22 50499164 rs147031924 T C 100 PASS RSQ=0.7776;AC=196;AA=T;AN=2184;VT=SNP;ERATE=0.0026;AVGPOST=0.9443;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0944;AF=0.09;ASN_AF=0.07;AMR_AF=0.14;AFR_AF=0.07;EUR_AF=0.09 GT:DS:GL 0|1:0.85:-1.54,-0.01,-3.55 1|0:0.9:-0.21,-0.46,-1.35 0|0:0:-0.38,-0.44,-0.65 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.22,-0.43,-1.78 22 50499165 rs186840663 G A 100 PASS AA=G;AN=2184;ERATE=0.0009;THETA=0.0008;VT=SNP;AC=179;AVGPOST=0.9617;SNPSOURCE=LOWCOV;LDAF=0.0806;RSQ=0.8335;AF=0.08;ASN_AF=0.07;AMR_AF=0.13;AFR_AF=0.05;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.08,-0.79,-5 1|0:0.9:-0.22,-0.46,-1.34 0|0:0:-0.28,-0.44,-0.95 0|0:0:-0.14,-0.56,-2.98 0|0:0:-0.22,-0.43,-1.79 22 50499169 rs41283493 G A 100 PASS ERATE=0.0013;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9604;RSQ=0.8266;SNPSOURCE=LOWCOV;AC=180;LDAF=0.0811;AF=0.08;ASN_AF=0.07;AMR_AF=0.13;AFR_AF=0.05;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.06,-0.86,-5 1|0:0.9:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.1,-0.68,-4 0|0:0:-0.22,-0.42,-1.75 22 50499179 . CAG C 93 PASS ERATE=0.0057;AN=2184;RSQ=0.4503;VT=INDEL;THETA=0.0017;AC=43;AVGPOST=0.9417;LDAF=0.0432;AF=0.02;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.9,-15.5 0|0:0.1:0,0,0 0|0:0.05:0,0,0 0|0:0:0,-0.6,-12.2 0|0:0:0,0,0 22 50499215 rs190027926 T C 100 PASS RSQ=0.3577;ERATE=0.0027;AA=C;AN=2184;AC=29;THETA=0.0008;VT=SNP;AVGPOST=0.9432;SNPSOURCE=LOWCOV;LDAF=0.0359;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.19 0|0:0.05:-0.48,-0.48,-0.48 22 50499220 rs181107844 G A 100 PASS AN=2184;THETA=0.0005;VT=SNP;AC=10;AA=A;ERATE=0.0011;RSQ=0.4179;AVGPOST=0.9865;SNPSOURCE=LOWCOV;LDAF=0.0089;AF=0.0046;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.24,-0.45,-1.2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.48,-0.48,-0.48 22 50499225 rs185467535 G A 100 PASS THETA=0.0022;AA=G;AN=2184;VT=SNP;RSQ=0.2801;LDAF=0.0049;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AVGPOST=0.9911;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0.45:-0.11,-0.67,-4.4 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50499239 rs4838880 C T 100 PASS AN=2184;AC=393;RSQ=0.9688;AVGPOST=0.989;VT=SNP;LDAF=0.1824;AA=-;THETA=0.0017;ERATE=0.0011;SNPSOURCE=LOWCOV;AF=0.18;ASN_AF=0.25;AMR_AF=0.17;AFR_AF=0.16;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.04,-1.09,-5 0|1:0.95:-0.44,-0.46,-0.54 0|0:0.1:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50499339 rs146467492 C T 100 PASS RSQ=0.6603;LDAF=0.0027;AA=C;AN=2184;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9978;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.04,-1.05,-5 0|0:0:-0.12,-0.62,-3.14 0|0:0:-0.22,-0.42,-1.84 0|0:0:-0.11,-0.66,-4.7 22 50499352 rs139148001 G A 100 PASS THETA=0.0009;LDAF=0.0033;RSQ=0.7567;AA=G;AN=2184;VT=SNP;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9982;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.04,-1.03,-5 0|0:0:-0.13,-0.6,-2.98 0|0:0:-0.19,-0.45,-2.25 0|0:0:-0.11,-0.64,-4.7 22 50499479 rs116535312 A G 100 PASS THETA=0.0004;RSQ=0.3558;AN=2184;VT=SNP;AA=A;ERATE=0.0008;AVGPOST=0.9954;SNPSOURCE=LOWCOV;AC=2;LDAF=0.0031;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.19,-0.46,-2.38 0|0:0:-0.34,-0.39,-0.87 22 50499498 rs11913258 C G 100 PASS RSQ=0.7637;AA=C;AN=2184;LDAF=0.0037;AC=6;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0006;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.12,-0.61,-4 0|0:0:-0.34,-0.39,-0.87 22 50499523 rs11912804 G T 100 PASS ERATE=0.0005;AA=G;AN=2184;LDAF=0.004;AC=6;VT=SNP;THETA=0.0018;RSQ=0.7192;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.21,-0.47,-1.34 0|0:0:-0.12,-0.6,-4 0|0:0:-0.19,-0.46,-2.94 22 50499581 rs114598884 G A 100 PASS AA=G;AN=2184;LDAF=0.004;AC=8;VT=SNP;THETA=0.0006;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.8794;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.17,-0.5,-3.14 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.18,-0.46,-2.43 0|0:0:-0.12,-0.61,-3.8 22 50499598 rs12484303 G A 100 PASS AA=G;AN=2184;AC=37;AVGPOST=0.9944;ERATE=0.0009;VT=SNP;LDAF=0.018;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.8837;AF=0.02;ASN_AF=0.01;AMR_AF=0.08;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.02,-5 0|0:0:-0.06,-0.87,-3.59 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.07,-0.84,-5 22 50499673 rs115770001 G A 100 PASS AC=28;AA=G;AN=2184;THETA=0.0001;RSQ=0.9627;VT=SNP;AVGPOST=0.9989;LDAF=0.013;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.19,-0.47,-2.25 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.07,-0.85,-5 22 50499727 rs182158300 G T 100 PASS AVGPOST=0.9977;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0029;ERATE=0.0008;AC=5;RSQ=0.6543;SNPSOURCE=LOWCOV;AF=0.0023;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.09,-0.71,-5 0|0:0:-0.13,-0.6,-3.11 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.11,-0.65,-4.7 22 50499797 rs148160537 G A 100 PASS AA=G;AN=2184;AC=6;THETA=0.0005;VT=SNP;ERATE=0.001;AVGPOST=0.9991;LDAF=0.0028;SNPSOURCE=LOWCOV;RSQ=0.8686;AF=0.0027;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.59,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.05,-1,-4.7 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.35,-5 22 50499942 rs75931219 G A 100 PASS AVGPOST=1;LDAF=0.0041;AA=G;AN=2184;VT=SNP;THETA=0.0006;AC=9;RSQ=0.9946;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50499957 rs41283496 G A 100 PASS AA=G;AN=2184;LDAF=0.0197;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.9967;ERATE=0.0003;AVGPOST=0.9999;AC=42;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.1,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 22 50499964 rs137919 T C 100 PASS AVGPOST=0.9986;LDAF=0.2609;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=568;THETA=0.0008;VT=SNP;ERATE=0.0003;RSQ=0.9975;AF=0.26;ASN_AF=0.33;AMR_AF=0.37;AFR_AF=0.1;EUR_AF=0.26 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0.15,-0.52 1|0:1:-1.38,-0.02,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50499965 rs185151842 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1;THETA=0.0013;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50499967 rs2072873 T C 100 PASS AC=330;LDAF=0.151;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;ERATE=0.0003;AF=0.15;ASN_AF=0.21;AMR_AF=0.12;AFR_AF=0.13;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 0|1:1:-0.64,-0.11,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50499993 rs78563213 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50500000 rs142027672 C T 100 PASS LDAF=0.0067;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.981;AC=15;THETA=0.0007;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50500032 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50500263 rs75152548 T C 100 PASS ERATE=0.0004;RSQ=0.9926;AA=C;AN=2184;AVGPOST=0.9981;THETA=0.0005;LDAF=0.1139;VT=SNP;SNPSOURCE=LOWCOV;AC=246;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0,-3.85,-5 1|0:1:-0.86,-0.06,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0,-3.85,-5 22 50500297 rs190746868 C T 100 PASS AVGPOST=0.9977;AN=2184;ERATE=0.0009;VT=SNP;AA=c;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6636;THETA=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.23,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0,-2.45,-5 22 50500375 rs183916737 G T 100 PASS AC=7;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.6585;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.005;AVGPOST=0.996;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.66,-5 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THETA=0.0039;AA=C;AN=2184;RSQ=0.9133;LDAF=0.9115;VT=SNP;AC=2007;SNPSOURCE=LOWCOV;AVGPOST=0.9819;ERATE=0.0007;AF=0.92;ASN_AF=0.92;AMR_AF=0.93;AFR_AF=0.95;EUR_AF=0.89 GT:DS:GL 1|1:2:-5,-0.83,-0.07 1|1:2:-2.65,-0.46,-0.19 1|1:1.8:-4.7,-0.63,-0.12 1|0:0.85:-0.18,-0.48,-2.17 0|0:0:-0.13,-0.58,-4.1 22 50501832 rs113305264 G A 100 PASS RSQ=0.5037;AA=G;AN=2184;LDAF=0.0032;VT=SNP;THETA=0.0006;AVGPOST=0.9964;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.3,-5 0|0:0:-0.2,-0.45,-1.92 0|0:0:-0.03,-1.21,-5 22 50501834 rs5771140 G A 100 PASS AVGPOST=0.9933;LDAF=0.1145;AA=G;AN=2184;AC=249;VT=SNP;THETA=0.0017;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9747;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.01,-1.72,-5 1|0:1:-0.48,-0.48,-0.48 0|0:0.1:-0.05,-0.97,-5 0|0:0:-0.19,-0.46,-2.02 0|0:0:-0.02,-1.45,-5 22 50501887 rs3817814 C G 100 PASS AVGPOST=0.9745;AA=G;AN=2184;RSQ=0.8997;THETA=0.0005;VT=SNP;ERATE=0.0008;LDAF=0.0952;SNPSOURCE=LOWCOV;AC=209;AF=0.1;ASN_AF=0.08;AMR_AF=0.15;AFR_AF=0.07;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0.15:-0.22,-0.42,-1.76 0|0:0:-0.46,-0.47,-0.5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.19,-0.46,-2.15 22 50501888 rs3817815 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;AC=214;AVGPOST=0.9754;VT=SNP;LDAF=0.0968;RSQ=0.9035;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.1;ASN_AF=0.08;AMR_AF=0.15;AFR_AF=0.07;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0.15:-0.2,-0.44,-2.1 0|0:0:-0.37,-0.44,-0.68 0|0:0:-0.05,-0.94,-5 0|0:0:-0.19,-0.46,-2.15 22 50501919 . A AC 155 PASS ERATE=0.0005;THETA=0.0014;LDAF=0.0218;AN=2184;AC=45;VT=INDEL;AVGPOST=0.9973;RSQ=0.9459;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.2,-12.5 0|0:0:0,-0.6,-4.9 0|0:0:0,-0.3,-2.9 0|0:0:0,0,0 0|0:0:0,0,0 22 50501925 rs5771336 G A 100 PASS RSQ=0.7429;AN=2184;LDAF=0.1553;VT=SNP;THETA=0.0006;AA=A;ERATE=0.022;AC=295;SNPSOURCE=LOWCOV;AVGPOST=0.914;AF=0.14;ASN_AF=0.11;AMR_AF=0.18;AFR_AF=0.11;EUR_AF=0.14 GT:DS:GL 0|0:0.35:-0.49,-0.17,-5 1|0:0.85:-1.75,-0.01,-5 0|0:0:-0.12,-0.61,-3.11 0|0:0.25:-0.27,-0.34,-4 0|0:0.05:-0.18,-0.46,-3 22 50501940 rs139020945 T G 100 PASS ERATE=0.0004;RSQ=0.9848;AA=T;AN=2184;AC=45;VT=SNP;AVGPOST=0.9993;LDAF=0.0209;SNPSOURCE=LOWCOV;THETA=0.002;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.06,-0.87,-5 22 50501957 rs73183370 G C 100 PASS RSQ=0.9795;AA=G;AN=2184;VT=SNP;AC=333;LDAF=0.1512;SNPSOURCE=LOWCOV;AVGPOST=0.9929;THETA=0.0007;ERATE=0.0007;AF=0.15;ASN_AF=0.01;AMR_AF=0.18;AFR_AF=0.05;EUR_AF=0.32 GT:DS:GL 1|0:1:-3.27,-0,-3.62 0|0:0:-0.01,-1.54,-5 0|1:1:-5,0,-5 1|0:1:-2.74,-0.46,-0.19 0|0:0:-0.04,-1.11,-5 22 50502135 rs111834984 T C 100 PASS AA=C;AC=311;THETA=0.0014;AN=2184;VT=SNP;RSQ=0.6638;LDAF=0.1716;ERATE=0.0276;SNPSOURCE=LOWCOV;AVGPOST=0.881;AF=0.14;ASN_AF=0.12;AMR_AF=0.21;AFR_AF=0.11;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.01,-1.49,-5 1|0:0.65:-0.12,-0.63,-3.25 0|0:0.25:-0.08,-0.75,-3.01 0|1:1:-3.85,-0,-3.09 0|0:0.25:-0.48,-0.48,-0.48 22 50502159 rs185572307 T G 100 PASS ERATE=0.0005;THETA=0.0015;AA=T;AN=2184;RSQ=0.5905;VT=SNP;LDAF=0.0029;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9968;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.07,-0.82,-5 0|0:0.2:-2,-0.12,-0.62 0|0:0:-0.03,-1.14,-5 0|0:0:-0.48,-0.48,-0.48 22 50502215 rs4600768 A G 100 PASS RSQ=0.4903;LDAF=0.4448;AA=G;AN=2184;AC=918;VT=SNP;AVGPOST=0.8108;SNPSOURCE=LOWCOV;ERATE=0.1301;THETA=0.0016;AF=0.42;ASN_AF=0.42;AMR_AF=0.45;AFR_AF=0.39;EUR_AF=0.43 GT:DS:GL 0|0:0:-0.03,-1.19,-5 1|0:1:-1.54,-0.03,-1.49 1|0:1.25:-2.8,-0.47,-0.18 0|1:0.8:-0.5,-0.17,-2.05 0|0:0.55:-0.18,-0.46,-3.01 22 50502245 rs115774984 C T 100 PASS AA=C;AN=2184;AC=144;VT=SNP;ERATE=0.0019;AVGPOST=0.9608;LDAF=0.0713;SNPSOURCE=LOWCOV;THETA=0.0016;RSQ=0.7975;AF=0.07;ASN_AF=0.05;AMR_AF=0.09;AFR_AF=0.06;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.93,-5 1|0:1:-2.49,-0.23,-0.4 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.07,-0.85,-5 0|0:0:-0.11,-0.65,-4.7 22 50502265 rs12484051 G A 100 PASS AN=2184;VT=SNP;ERATE=0.1055;AA=A;LDAF=0.429;AC=859;THETA=0.0017;SNPSOURCE=LOWCOV;AVGPOST=0.8413;RSQ=0.488;AF=0.39;ASN_AF=0.35;AMR_AF=0.4;AFR_AF=0.41;EUR_AF=0.41 GT:DS:GL 0|1:1:-2.07,-0,-5 0|1:1:-2.24,-0.11,-0.67 0|0:0.9:-0.25,-0.45,-1.11 1|0:1:-1.84,-0.01,-2.95 0|1:1.1:-5,-0.08,-0.79 22 50502285 rs12483792 T C 100 PASS THETA=0.0004;RSQ=0.4696;AN=2184;VT=SNP;AC=621;ERATE=0.0979;SNPSOURCE=LOWCOV;AVGPOST=0.7957;LDAF=0.3405;AA=t;AF=0.28;ASN_AF=0.26;AMR_AF=0.35;AFR_AF=0.28;EUR_AF=0.28 GT:DS:GL 0|1:0.85:-0.55,-0.14,-4.22 0|0:0.55:-0.21,-0.46,-1.36 1|0:1:-0.48,-0.48,-0.48 0|0:0.45:-0.1,-0.67,-3.92 0|0:0.5:-0.07,-0.85,-5 22 50502333 rs114466453 G A 100 PASS AC=440;AVGPOST=0.7973;AA=g;RSQ=0.479;AN=2184;VT=SNP;THETA=0.003;SNPSOURCE=LOWCOV;ERATE=0.1085;LDAF=0.2801;AF=0.2;ASN_AF=0.18;AMR_AF=0.19;AFR_AF=0.2;EUR_AF=0.23 GT:DS:GL 0|0:0.4:-0.19,-0.45,-2.64 1|0:0.85:-0.37,-0.44,-0.67 0|0:0.5:-0.48,-0.48,-0.48 0|0:0.4:-0.19,-0.46,-2.33 0|1:1:-2.21,-0,-3.42 22 50502447 . C T 100 PASS RSQ=0.9937;AVGPOST=0.9977;THETA=0.0032;LDAF=0.1549;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=338;ERATE=0.0003;AF=0.15;ASN_AF=0.34;AMR_AF=0.12;AFR_AF=0.04;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.03,-1.24,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.08,-0.78,-3.12 0|0:0:-0.01,-1.85,-5 0|0:0:-0,-2.76,-5 22 50502451 . C T 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;AA=c;RSQ=0.7073;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.11,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.21,-0.47,-1.35 0|0:0:-0,-2.96,-5 0|0:0:-0,-2.72,-5 22 50502469 rs11568190 A G 100 PASS LDAF=0.1098;AN=2184;VT=SNP;AC=241;SNPSOURCE=LOWCOV;THETA=0.001;AA=a;ERATE=0.0007;RSQ=0.9677;AVGPOST=0.9911;AF=0.11;ASN_AF=0.09;AMR_AF=0.15;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0,-3.28,-5 1|0:1:-1.61,-0.01,-2.47 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-3.28,-5 0|0:0:-0,-4.7,-5 22 50502490 . G A 100 PASS RSQ=0.6561;AA=g;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0046;AVGPOST=0.9991;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.39,-5 0|0:0:-0,-3.52,-5 0|0:0:0,-5,-5 22 50502491 rs11568188 T C 100 PASS AC=245;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9957;VT=SNP;LDAF=0.1125;AVGPOST=0.9988;ERATE=0.0003;THETA=0.0024;AA=t;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0,-4.7,-5 1|0:1:-5,-0.04,-1.09 0|0:0:-0.19,-0.45,-5 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 22 50502496 . G C 100 PASS ERATE=0.0004;AA=g;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;THETA=0.0012;AC=1;RSQ=0.6624;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.5,-5 0|0:0.05:-0.14,-0.57,-5 0|0:0:-0,-3.49,-5 0|0:0:0,-5,-5 22 50502517 . C A 100 PASS THETA=0.0009;AN=2184;VT=SNP;AA=c;RSQ=0.8178;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50502526 rs11568187 A G 100 PASS AVGPOST=0.9994;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9978;LDAF=0.1136;ERATE=0.0003;AC=247;THETA=0.0003;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50502544 rs11568186 G A 100 PASS LDAF=0.1131;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0012;RSQ=0.9952;ERATE=0.0003;AVGPOST=0.9987;AC=247;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-0.93,-0.05,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50502590 rs141225099 A T 100 PASS RSQ=0.9406;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0018;AC=9;LDAF=0.0044;AA=a;ERATE=0.0003;AVGPOST=0.9995;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.13,-0.6,-2.16 0|0:0:-0,-3.38,-5 0|0:0:0,-5,-5 22 50502636 rs11568185 G A 100 PASS ERATE=0.0005;AA=g;LDAF=0.1148;AN=2184;AC=249;THETA=0.0008;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9962;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.02,-1.44,-5 1|0:1:-5,-0,-3.55 0|0:0:-0.23,-0.46,-1.22 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.59,-5 22 50502650 rs11568184 G A 100 PASS AC=248;AA=g;AN=2184;RSQ=0.9987;LDAF=0.1141;AVGPOST=0.9996;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0,-2.02,-5 1|0:1:-5,-0,-2.51 0|0:0:-0.08,-0.79,-3.18 0|0:0:-0,-2.87,-5 0|0:0:-0,-3.06,-5 22 50502766 rs11568183 C T 100 PASS LDAF=0.2718;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9943;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AC=593;ERATE=0.0007;AA=t;AF=0.27;ASN_AF=0.3;AMR_AF=0.29;AFR_AF=0.24;EUR_AF=0.26 GT:DS:GL 0|0:0:-0,-2.88,-5 1|1:2:-5,-3.47,-0 0|0:0:-0,-2.52,-5 0|0:0:-0.03,-1.15,-5 0|0:0:0,-5,-5 22 50502808 rs150770587 G A 100 PASS ERATE=0.0004;AA=g;RSQ=0.9095;AN=2184;VT=SNP;AC=10;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.005;THETA=0.0003;AF=0.0046;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-3.85,-5 0|0:0.35:-0.03,-1.15,-5 0|0:0:-0,-3.92,-5 22 50502812 rs139121589 T C 100 PASS RSQ=0.9807;LDAF=0.0068;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0017;AC=15;SNPSOURCE=LOWCOV;ERATE=0.0003;AA=t;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.57,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0,-2.62,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.01,-1.94,-5 22 50502886 rs8142282 C T 100 PASS AN=2184;RSQ=0.9916;VT=SNP;ERATE=0.0008;AVGPOST=0.9948;LDAF=0.4802;SNPSOURCE=LOWCOV;AC=1049;AA=t;THETA=0.0003;AF=0.48;ASN_AF=0.47;AMR_AF=0.49;AFR_AF=0.34;EUR_AF=0.57 GT:DS:GL 1|0:1:-4.7,-0,-3.22 1|0:1:-5,0,-5 0|1:1:-5,-0,-3.92 1|0:1:-2.14,-0.01,-2.01 0|0:0:-0.01,-1.73,-5 22 50502888 rs8136173 T C 100 PASS ERATE=0.0004;RSQ=0.9929;THETA=0.0004;AN=2184;AVGPOST=0.9975;VT=SNP;LDAF=0.1539;SNPSOURCE=LOWCOV;AC=337;AA=t;AF=0.15;ASN_AF=0.33;AMR_AF=0.12;AFR_AF=0.04;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.02,-1.31,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.58,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0,-2.1,-5 22 50502893 rs61350648 A C 100 PASS RSQ=0.9963;AN=2184;AC=124;VT=SNP;LDAF=0.0566;SNPSOURCE=LOWCOV;AA=a;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.06;AMR_AF=0.03;AFR_AF=0.23 GT:DS:GL 0|0:0:-0.04,-1.03,-5 0|0:0:-0,-3.13,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.02,-1.33,-5 22 50502921 rs145244403 C G 100 PASS ERATE=0.0004;AVGPOST=0.9994;AN=2184;VT=SNP;THETA=0.0027;AA=c;RSQ=0.9607;AC=15;SNPSOURCE=LOWCOV;LDAF=0.0069;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.17,-0.49,-2.44 0|0:0:-0.02,-1.37,-5 22 50502999 rs78212605 C T 100 PASS ERATE=0.0014;AN=2184;AC=37;AVGPOST=0.9901;LDAF=0.0199;VT=SNP;RSQ=0.796;AA=c;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.89,-5 1|0:0.7:-0.02,-1.26,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0,-1.95,-5 0|0:0.05:-0.1,-0.67,-5 22 50503000 rs117303831 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;AC=45;LDAF=0.0208;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.9883;AVGPOST=0.9995;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.91,-5 0|0:0:-0.06,-0.87,-5 22 50503051 rs190829941 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;RSQ=0.949;THETA=0.0005;VT=SNP;AC=15;SNPSOURCE=LOWCOV;LDAF=0.007;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0.05:-0.32,-0.43,-0.84 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.05,-0.96,-5 0|0:0:-0.02,-1.4,-5 22 50503061 . GT G 462 PASS ERATE=0.0005;AN=2184;VT=INDEL;THETA=0.0008;LDAF=0.1129;RSQ=0.9845;AVGPOST=0.9959;AC=246;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:0,-1.5,-23.5 1|0:1:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-9.3 0|0:0:0,0,0 22 50503063 rs181700711 G T 100 PASS ERATE=0.0004;AA=g;RSQ=0.982;AN=2184;AC=45;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.021;AVGPOST=0.9992;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.09,-0.73,-4.4 0|0:0:-0.01,-1.65,-5 22 50503311 . AC A 29 PASS ERATE=0.0004;AN=2184;VT=INDEL;AVGPOST=0.9478;RSQ=0.8193;LDAF=0.0973;AC=218;THETA=0.0003;AF=0.1;ASN_AF=0.0035;AMR_AF=0.07;AFR_AF=0.04;EUR_AF=0.22 GT:DS:GL 0|0:0.05:0,-0.3,-4.6 0|0:0:0,0,0 0|0:0.45:0,0,0 1|0:0.65:0,-0.3,-4.6 0|0:0:0,0,0 22 50503312 rs55744003 CA C 332 PASS ERATE=0.0004;RSQ=0.9881;AN=2184;VT=INDEL;AC=333;THETA=0.0006;LDAF=0.1521;AVGPOST=0.9959;AF=0.15;ASN_AF=0.01;AMR_AF=0.18;AFR_AF=0.05;EUR_AF=0.32 GT:DS:GL 1|0:1:-2.8,0,-3.5 0|0:0:0,0,0 0|1:1:0,0,0 1|0:0.95:0,-0.6,-6.9 0|0:0:0,0,0 22 50503336 rs8137998 C A 100 PASS THETA=0.0021;AA=T;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.9621;AC=348;SNPSOURCE=LOWCOV;RSQ=0.9058;LDAF=0.1726;AF=0.16;ASN_AF=0.23;AMR_AF=0.12;AFR_AF=0.14;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|1:1:-5,0,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.86,-5 22 50503359 rs5771141 A G 100 PASS ERATE=0.0005;RSQ=0.9917;AA=G;AN=2184;AC=249;AVGPOST=0.9979;VT=SNP;THETA=0.0006;LDAF=0.1154;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.03,-1.21,-5 1|0:1:-1.81,-0.01,-2.39 0|0:0:-0.06,-0.86,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-2.12,-5 22 50503375 rs186009726 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;VT=SNP;RSQ=0.4994;LDAF=0.0014;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9984;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.03,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.02,-1.38,-5 22 50503378 . C CAG 352 PASS AVGPOST=0.9912;AN=2184;ERATE=0.0025;VT=INDEL;THETA=0.0006;RSQ=0.9663;AC=251;LDAF=0.116;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-2.1,-30.9 1|0:1:0,-0.3,-4.3 0|0:0:0,-1.2,-17.6 0|0:0.05:0,-0.6,-6.9 0|0:0:0,-0.9,-13.2 22 50503457 rs188426056 G A 100 PASS AC=7;LDAF=0.0083;AA=G;AN=2184;RSQ=0.3852;AVGPOST=0.9869;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0029;AF=0.0032;ASN_AF=0.0017;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0.5:-2.09,-0.01,-2.11 0|0:0.05:-0.1,-0.67,-4.1 0|0:0:-0.2,-0.45,-1.92 0|0:0.05:-0.04,-1.09,-5 22 50503641 rs58697581 C G 100 PASS ERATE=0.0004;AA=C;LDAF=0.0567;AN=2184;AC=124;RSQ=0.9939;VT=SNP;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AF=0.06;AMR_AF=0.03;AFR_AF=0.23 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.04,-1.07,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.19,-0.46,-2.16 22 50503643 rs181242625 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.6923;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.18,-0.47,-2.38 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.01,-1.5,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 22 50503644 rs114814021 G A 100 PASS ERATE=0.0004;LDAF=0.0041;AA=G;AN=2184;VT=SNP;AC=9;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0013;RSQ=0.8782;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.02,-1.42,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.48,-0.48,-0.48 22 50503832 rs147631558 T C 100 PASS AVGPOST=0.9983;AA=T;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0008;LDAF=0.0028;AC=5;SNPSOURCE=LOWCOV;RSQ=0.7568;AF=0.0023;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.02,-1.31,-5 0|0:0.05:-0.11,-0.65,-4.4 0|0:0:-0.19,-0.46,-2.17 22 50503840 rs12160101 C T 100 PASS ERATE=0.0005;AA=T;AN=2184;RSQ=0.9953;VT=SNP;AVGPOST=0.9988;LDAF=0.1138;SNPSOURCE=LOWCOV;THETA=0.001;AC=247;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.01,-1.77,-5 1|0:1:-5,-0.01,-1.68 0|0:0:-0.02,-1.26,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.13,-0.58,-3.44 22 50503906 rs140629864 C T 100 PASS AA=C;AN=2184;RSQ=0.8666;AC=8;LDAF=0.0043;VT=SNP;ERATE=0.0008;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0037;AMR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.67,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-2.57,-5 0|0:0.05:-0.18,-0.47,-2.15 0|0:0.05:-0.12,-0.63,-3.92 22 50503974 rs184910866 C T 100 PASS AA=C;THETA=0.0004;RSQ=0.5506;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0.05:-0.04,-1.02,-5 0|0:0:-0,-2.65,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.11,-0.63,-4 22 50503982 rs190788413 G A 100 PASS ERATE=0.0004;LDAF=0.0009;THETA=0.0004;AA=G;AN=2184;RSQ=0.5598;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.11,-0.64,-4 22 50503985 rs183029035 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AVGPOST=0.9994;AN=2184;VT=SNP;LDAF=0.0007;RSQ=0.5838;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-3.04,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.11,-0.64,-4.1 22 50504064 rs9617140 A G 100 PASS ERATE=0.0004;AC=330;LDAF=0.151;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9971;SNPSOURCE=LOWCOV;RSQ=0.9908;AF=0.15;ASN_AF=0.21;AMR_AF=0.12;AFR_AF=0.13;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.01,-1.86,-5 0|1:1:-5,-0.02,-1.4 0|0:0:-0,-2.04,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.07,-0.85,-5 22 50504079 rs6010254 C T 100 PASS ERATE=0.0004;AA=C;AC=248;AN=2184;VT=SNP;LDAF=0.1147;THETA=0.0025;RSQ=0.9952;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0,-2.63,-5 1|0:1:-1.83,-0.01,-4 0|0:0:-0,-2.54,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.09,-5 22 50504120 rs187150419 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9989;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;RSQ=0.5908;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.05,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.11,-0.63,-4 22 50504154 rs7285509 T C 100 PASS ERATE=0.0004;RSQ=0.8995;AA=T;AN=2184;AC=13;AVGPOST=0.9981;VT=SNP;LDAF=0.0063;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.66,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.03,-1.12,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.19,-0.46,-2.16 22 50504197 rs116327480 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=G;AN=2184;VT=SNP;LDAF=0.0026;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7594;THETA=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0,-2.24,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.07,-0.85,-5 22 50504295 rs144593928 C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.8138;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.57,-5 0|0:0:-0,-2.64,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.04,-5 22 50504310 rs73183374 C T 100 PASS ERATE=0.0004;AC=248;RSQ=0.9982;AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;AA=c;SNPSOURCE=LOWCOV;LDAF=0.1143;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0,-2.58,-5 1|0:1:-5,0,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.32,-5 22 50504311 rs192438679 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;RSQ=0.8313;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0,-2.77,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.35,-5 22 50504335 rs183336387 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.5993;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-2.94,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0,-2.31,-5 22 50504361 rs187593667 A G 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6609;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.07,-5 0|0:0:-0,-3.34,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.02,-1.32,-5 22 50504370 rs117616637 T C 100 PASS ERATE=0.0004;AC=30;THETA=0.0004;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0163;RSQ=0.791;AVGPOST=0.9911;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0.05:-0.05,-0.93,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-3.32,-5 1|0:0.55:-0.06,-0.92,-5 0|0:0:-0.07,-0.85,-5 22 50504446 rs2294385 A G 100 PASS AC=2016;LDAF=0.9223;AN=2184;VT=SNP;RSQ=0.9849;ERATE=0.0008;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AA=a;THETA=0.0003;AF=0.92;ASN_AF=0.92;AMR_AF=0.93;AFR_AF=0.95;EUR_AF=0.91 GT:DS:GL 1|1:2:-2.98,-0.46,-0.19 1|1:2:-5,-2.12,-0 1|1:2:-5,-3.24,-0 1|0:1:-5,-0,-2.34 0|0:0:-0.11,-0.64,-4.1 22 50504487 rs5771340 T C 100 PASS ERATE=0.0004;LDAF=0.1144;AA=C;AC=248;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.998;AVGPOST=0.9995;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.05,-0.95,-5 1|0:1:-2.89,-0.49,-0.17 0|0:0:-0.08,-0.8,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.11,-0.64,-4.1 22 50504507 rs3830745 TC T 387 PASS THETA=0.0004;AN=2184;AC=250;RSQ=0.9877;VT=INDEL;AVGPOST=0.9968;ERATE=0.0006;LDAF=0.1167;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.12 GT:DS:GL 0|0:0:0,-0.9,-13.5 1|0:1:-3.9,-0.3,0 0|0:0:0,0,0 0|0:0:0,-0.9,-13.1 0|0:0:0,-0.3,-4.5 22 50504580 rs191665443 G A 100 PASS AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;RSQ=0.522;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;THETA=0.0003;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.07,-0.82,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.07,-0.84,-5 22 50504637 rs5771341 G A 100 PASS ERATE=0.0004;AVGPOST=0.9986;LDAF=0.1163;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=252;RSQ=0.9947;THETA=0.0003;AF=0.12;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.04,-1.02,-5 1|0:1:-2.33,-0.1,-0.69 0|0:0:-0.2,-0.45,-2.12 0|0:0:-0.04,-1.09,-5 0|0:0:-0.04,-1.05,-5 22 50504686 rs2294386 G A 100 PASS THETA=0.0032;AC=334;LDAF=0.153;AA=G;AN=2184;AVGPOST=0.9962;VT=SNP;RSQ=0.9884;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.15;ASN_AF=0.33;AMR_AF=0.12;AFR_AF=0.04;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.03,-1.12,-5 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.17,-5 0|0:0:-0.02,-1.4,-5 0|0:0.05:-0.19,-0.45,-2.15 22 50504703 rs8139747 G A 100 PASS RSQ=0.8972;AA=G;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.001;AVGPOST=0.9915;AC=64;SNPSOURCE=LOWCOV;LDAF=0.0318;AF=0.03;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.0026 GT:DS:GL 0|1:0.55:-0.06,-0.92,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.05,-1,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.12,-0.63,-4 22 50504737 rs2294387 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;AC=249;VT=SNP;AVGPOST=0.9964;SNPSOURCE=LOWCOV;RSQ=0.986;LDAF=0.1136;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 1|0:0.95:-0.04,-1.04,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.12,-5 0|0:0:-0.01,-1.75,-5 22 50504741 rs2294388 A G 100 PASS ERATE=0.0005;LDAF=0.1163;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AA=a;AC=252;THETA=0.0007;RSQ=0.9743;AVGPOST=0.9926;AF=0.12;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 1|0:0.95:-0.12,-0.63,-4.1 0|0:0:-0.01,-1.58,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.04,-1.09,-5 22 50504781 rs2294389 A G 100 PASS ERATE=0.0005;AN=2184;AC=249;RSQ=0.9896;LDAF=0.1139;VT=SNP;THETA=0.0037;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AA=a;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.01,-1.79,-5 1|0:1:-2.16,-0.02,-1.5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.6,-5 0|0:0:-0.11,-0.64,-4 22 50504804 rs2294390 T C 100 PASS THETA=0.0002;AVGPOST=0.9943;AN=2184;AC=250;VT=SNP;LDAF=0.1157;ERATE=0.0008;SNPSOURCE=LOWCOV;AA=N;RSQ=0.9804;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.03,-1.22,-5 1|0:1:-0.07,-0.85,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0,-2,-5 0|0:0:-0.11,-0.64,-4 22 50504907 rs5771346 A G 100 PASS AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.987;AVGPOST=0.997;SNPSOURCE=LOWCOV;AA=N;AC=247;THETA=0.0003;LDAF=0.1146;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.01,-1.51,-5 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.34,-5 0|0:0:-0.18,-0.48,-2.22 0|0:0:-0.22,-0.43,-1.79 22 50504949 rs182714936 T C 100 PASS ERATE=0.0004;AVGPOST=0.9986;RSQ=0.4688;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AA=t;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.1,-0.7,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50504953 rs1807561 T G 100 PASS AC=2012;LDAF=0.9152;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9312;SNPSOURCE=LOWCOV;ERATE=0.0028;AVGPOST=0.9867;AA=N;AF=0.92;ASN_AF=0.92;AMR_AF=0.93;AFR_AF=0.95;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-1.16,-0.03 1|1:2:-5,-1.09,-0.04 1|1:2:-5,-0.96,-0.05 1|0:1:-2.17,-0.02,-1.47 0|0:0:-0.48,-0.48,-0.48 22 50504982 rs145117849 C T 100 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9994;AN=2184;VT=SNP;AA=c;RSQ=0.5932;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.2,-0.45,-2.1 22 50504983 rs186620889 G A 100 PASS ERATE=0.0005;LDAF=0.0009;AA=g;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5223;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.08,-0.77,-4.7 0|0:0:-0.06,-0.88,-5 0|0:0.05:-0.18,-0.48,-2.21 0|0:0:-0.19,-0.45,-2.15 22 50505133 rs6010255 C G 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;AC=333;RSQ=0.994;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0003;LDAF=0.1525;AF=0.15;ASN_AF=0.01;AMR_AF=0.18;AFR_AF=0.05;EUR_AF=0.32 GT:DS:GL 1|0:1:-4,-0,-5 0|0:0:-0.01,-1.56,-5 0|1:1:-5,-0,-4.22 1|0:1:-0.11,-0.65,-4.4 0|0:0:-0.11,-0.64,-4.1 22 50505152 . G GA 127 PASS AVGPOST=0.9752;ERATE=0.0069;LDAF=0.0227;AN=2184;VT=INDEL;THETA=0.0005;AC=32;RSQ=0.5559;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.5,-13 0|0:0:0,0,0 0|0:0:0,-0.6,-5.2 0|0:0:0,-0.9,-7.8 0|0:0.05:0,0,0 22 50505230 rs192314819 C A 100 PASS LDAF=0.0013;AA=C;AN=2184;RSQ=0.5142;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9984;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-3.34,-5 0|0:0:-0,-3.04,-5 0|0:0:-0.01,-1.61,-5 0|0:0:-0,-2.32,-5 22 50505289 rs35871037 T TA 294 PASS AC=330;AN=2184;AVGPOST=0.9952;VT=INDEL;THETA=0.0005;LDAF=0.1512;RSQ=0.9854;ERATE=0.0006;AF=0.15;ASN_AF=0.21;AMR_AF=0.12;AFR_AF=0.13;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-1.2,-12.9 0|1:1:-13.1,0,-4.6 0|0:0:0,0,0 0|0:0:0,-0.3,-3.2 0|0:0:0,-0.9,-8.5 22 50505321 rs9617142 G C 100 PASS AVGPOST=0.9963;AC=330;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.1509;RSQ=0.9894;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.15;ASN_AF=0.21;AMR_AF=0.12;AFR_AF=0.13;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|1:1:-5,-1.05,-0.04 0|0:0:-0.02,-1.29,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.07,-0.85,-5 22 50505335 . GC G 450 PASS RSQ=0.9885;AN=2184;VT=INDEL;LDAF=0.1527;AC=333;THETA=0.0006;ERATE=0.0006;AVGPOST=0.9961;AF=0.15;ASN_AF=0.33;AMR_AF=0.12;AFR_AF=0.03;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-2.1,-31.5 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-9 0|0:0:0,-0.3,-3.4 22 50505507 rs139001425 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9689;AC=16;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0076;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.5,-5 0|0:0:-0,-2.21,-5 0|0:0:-0,-2.96,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.01,-1.83,-5 22 50505546 rs140733497 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7149;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-2.65,-5 0|0:0:-0,-2.1,-5 22 50505550 rs184653637 A T 100 PASS AN=2184;LDAF=0.001;VT=SNP;AA=A;RSQ=0.529;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-3.4,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-2.37,-5 0|0:0:-0,-2.14,-5 22 50505584 rs5771348 A G 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;AC=249;VT=SNP;AA=A;LDAF=0.1151;SNPSOURCE=LOWCOV;AVGPOST=0.9987;RSQ=0.9947;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.03,-1.21,-5 1|0:1:-5,0,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-2.08,-5 0|0:0:-0,-2.38,-5 22 50505636 rs76845415 G A 100 PASS ERATE=0.0005;RSQ=0.6219;AA=G;AN=2184;VT=SNP;AVGPOST=0.9971;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.47,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.02,-1.32,-5 22 50505642 rs77481293 T C 100 PASS ERATE=0.0004;RSQ=0.9454;THETA=0.0004;AA=T;AN=2184;VT=SNP;AC=9;LDAF=0.0044;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.59,-5 0|0:0:-0,-3.05,-5 0|0:0:-0,-2.1,-5 0|0:0:-0.02,-1.34,-5 22 50505675 rs190335186 G A 100 PASS ERATE=0.0004;LDAF=0.0027;AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;AC=6;VT=SNP;RSQ=0.8936;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.14,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.12,-0.63,-4.7 22 50505752 . G GT 167 PASS RSQ=0.7754;THETA=0.0004;AN=2184;VT=INDEL;LDAF=0.0057;AC=10;AVGPOST=0.9968;ERATE=0.0006;AF=0.0046;ASN_AF=0.02 GT:DS:GL 0|0:0:0,-0.9,-11.7 0|0:0:0,-0.9,-11.7 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.9,-11.7 22 50505819 rs150085017 A G 100 PASS AC=300;ERATE=0.0073;AA=G;AN=2184;VT=SNP;RSQ=0.8235;AVGPOST=0.9441;SNPSOURCE=LOWCOV;LDAF=0.137;THETA=0.0003;AF=0.14;ASN_AF=0.01;AMR_AF=0.15;AFR_AF=0.05;EUR_AF=0.28 GT:DS:GL 1|0:1:-2.63,-0.18,-0.48 0|0:0:-0.06,-0.92,-5 0|1:0.8:-0.17,-0.5,-2.36 1|0:1:-2.14,-0.02,-1.46 0|0:0:-0.22,-0.42,-1.77 22 50505856 rs193284304 C A 100 PASS ERATE=0.0005;LDAF=0.0021;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0016;RSQ=0.621;AC=3;AVGPOST=0.9982;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0.04,-1.03,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.03,-1.18,-5 22 50505859 rs138414347 T C 100 PASS LDAF=0.1395;AA=C;AN=2184;AVGPOST=0.9261;AC=262;VT=SNP;RSQ=0.7546;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0169;AF=0.12;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.1;EUR_AF=0.14 GT:DS:GL 1|0:0.75:-1.74,-0.39,-0.24 1|0:1:-1.67,-0.01,-3.49 0|0:0:-0.05,-0.99,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.05,-0.95,-5 22 50505883 rs184210431 G A 100 PASS RSQ=0.8252;AVGPOST=0.9543;AC=228;AA=g;LDAF=0.1116;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0072;AF=0.1;ASN_AF=0.08;AMR_AF=0.15;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0.1:-0.11,-0.65,-4.4 0|0:0.3:-0.15,-0.53,-3.04 0|0:0:-0.06,-0.87,-4.7 0|0:0:-0.12,-0.62,-3.55 0|0:0:-0.05,-0.98,-5 22 50505926 rs188964343 C T 100 PASS AVGPOST=0.9936;AA=C;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.4561;LDAF=0.0048;ERATE=0.0007;THETA=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.38,-5 0|0:0:-0.05,-0.98,-5 22 50505954 rs75450062 G A 100 PASS ERATE=0.009;AA=g;AN=2184;AC=132;VT=SNP;LDAF=0.0897;AVGPOST=0.9053;RSQ=0.5577;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.06;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0.35:-0.48,-0.48,-0.48 0|0:0:-0.09,-0.74,-4.4 0|0:0:-0.14,-0.56,-5 0|0:0:-0.14,-0.57,-3.34 22 50506049 . T TCAGA 348 PASS LDAF=0.109;AN=2184;VT=INDEL;AC=138;RSQ=0.5351;THETA=0.0016;ERATE=0.0169;AVGPOST=0.8808;AF=0.06;ASN_AF=0.1;AMR_AF=0.02;AFR_AF=0.11;EUR_AF=0.03 GT:DS:GL 0|0:0.25:0,0,0 0|0:0.05:0,-0.6,-11.1 0|0:0.15:0,-0.3,-5.7 0|0:0:0,-1.2,-22.8 0|0:0.05:0,-0.3,-5.7 22 50506107 rs183973008 T C 100 PASS AN=2184;AC=8;RSQ=0.6056;VT=SNP;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0012;THETA=0.0007;LDAF=0.0051;AA=t;AF=0.0037;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.09,-0.74,-3.85 0|0:0:-0.06,-0.86,-4.7 0|0:0:-0.12,-0.61,-3.47 0|0:0:-0.03,-1.16,-5 22 50506235 rs113833242 A G 100 PASS LDAF=0.1291;AC=254;THETA=0.0004;AN=2184;ERATE=0.0094;VT=SNP;AVGPOST=0.9503;SNPSOURCE=LOWCOV;AA=a;RSQ=0.8183;AF=0.12;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.12 GT:DS:GL 0|0:0.05:-0.18,-0.48,-2.49 1|0:1:-0.48,-0.48,-0.48 0|0:0.05:-0.21,-0.43,-1.87 0|0:0:-0.02,-1.36,-5 0|0:0:-0.48,-0.48,-0.48 22 50506247 rs190000243 T A 100 PASS AA=T;AN=2184;VT=SNP;LDAF=0.0026;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=4;THETA=0.0043;ERATE=0.0007;RSQ=0.5345;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.13,-0.58,-2.94 0|0:0:-0.21,-0.43,-1.89 0|0:0:-0.02,-1.37,-5 0|0:0:-0.2,-0.45,-2.05 22 50506275 rs180802101 C A 100 PASS ERATE=0.0005;LDAF=0.0013;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.5743;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.01,-1.66,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.58,-5 22 50506385 rs35110809 A C 100 PASS AC=433;LDAF=0.1989;THETA=0.0002;RSQ=0.9945;AN=2184;AVGPOST=0.9979;VT=SNP;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AF=0.2;ASN_AF=0.24;AMR_AF=0.26;AFR_AF=0.1;EUR_AF=0.2 GT:DS:GL 0|1:1:-4.22,-0,-5 0|0:0:-0.04,-1.01,-5 1|0:1:-5,-0.4,-0.22 0|0:0:-0.02,-1.45,-5 0|0:0:-0.19,-0.46,-2.16 22 50506399 . AC A 192 PASS THETA=0.0004;LDAF=0.1152;AN=2184;VT=INDEL;RSQ=0.9844;AVGPOST=0.9959;AC=252;ERATE=0.0007;AF=0.12;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.12 GT:DS:GL 0|0:0:0,-1.5,-16.7 1|0:1:-2.4,0,-3.2 0|0:0:0,-0.6,-7.6 0|0:0:0,-0.9,-10.1 0|0:0:0,-0.3,-2.8 22 50506440 rs73183380 C T 100 PASS AA=C;AC=334;AN=2184;RSQ=0.9977;THETA=0.0005;LDAF=0.1527;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.15;ASN_AF=0.01;AMR_AF=0.18;AFR_AF=0.05;EUR_AF=0.32 GT:DS:GL 1|0:1:-5,-0.06,-0.87 0|0:0:-0,-2.53,-5 0|1:1:-5,0,-5 1|0:1:-5,-0.01,-1.73 0|0:0:-0.01,-1.59,-5 22 50506461 rs138025442 G A 100 PASS RSQ=0.6567;THETA=0.0004;AA=G;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9989;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.54,-5 0|0:0:-0,-3.12,-5 0|0:0:-0,-3.4,-5 0|0:0:-0,-1.95,-5 0|0:0:-0,-2.46,-5 22 50506663 rs5771142 G A 100 PASS ERATE=0.0005;LDAF=0.1149;AVGPOST=0.9994;AA=g;AN=2184;AC=249;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9974;THETA=0.0024;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-0.12,-0.61,-3.08 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-4.4,-5 22 50506668 rs2076127 C T 100 PASS LDAF=0.192;AA=C;AN=2184;THETA=0.004;VT=SNP;AVGPOST=0.9956;RSQ=0.988;SNPSOURCE=LOWCOV;AC=416;ERATE=0.0007;AF=0.19;ASN_AF=0.24;AMR_AF=0.26;AFR_AF=0.07;EUR_AF=0.2 GT:DS:GL 0|1:1:-5,0,-5 0|0:0:-0.08,-0.8,-4.7 1|0:1:-2.19,-0.13,-0.59 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-3.92,-5 22 50506734 rs11568181 G A 100 PASS AC=12;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0059;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9371;AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0.15:-2.9,-0.47,-0.18 0|0:0:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50506810 rs5771349 A G 100 PASS AVGPOST=1;AA=G;AN=2184;AC=249;VT=SNP;THETA=0.0006;LDAF=0.1147;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,-0,-4.1 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50506874 . C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;RSQ=0.9756;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50506936 . T C 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;THETA=0.0004;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50507009 . G A 100 PASS AVGPOST=1;LDAF=0.0027;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=EXOME;RSQ=1;THETA=0.0007;ERATE=0.0003;AF=0.0027;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50507016 . G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.67,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50507018 rs73893124 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9986;AC=123;LDAF=0.0563;ERATE=0.0003;AF=0.06;AMR_AF=0.03;AFR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.38,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50507019 rs11568179 G A 100 PASS RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=250;LDAF=0.1153;THETA=0.0005;VT=SNP;AVGPOST=0.9998;ERATE=0.0003;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,-0,-3.12 0|0:0:-0,-2.37,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50507064 rs75474964 G C 100 PASS ERATE=0.0004;THETA=0.0014;AA=G;AN=2184;AC=249;VT=SNP;RSQ=0.9965;SNPSOURCE=LOWCOV;LDAF=0.115;AVGPOST=0.9992;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-2.26,-0.11,-0.66 0|0:0:-0.22,-0.46,-1.25 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50507094 rs111258391 T C 100 PASS LDAF=0.1148;AA=T;AN=2184;AC=249;THETA=0.0031;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.999;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-4.22,-0,-2.91 0|0:0:-0.13,-0.6,-3.07 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50507185 rs186195606 C G 100 PASS ERATE=0.0004;AA=C;RSQ=0.7067;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0029;THETA=0.0017;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.2,-0.44,-2.1 0|0:0:-0.2,-0.45,-2.09 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.01,-1.89,-5 22 50507301 rs191868824 G A 100 PASS THETA=0.0015;AC=18;AA=G;AN=2184;VT=SNP;RSQ=0.7934;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.0096;AVGPOST=0.9949;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.04,-1.08,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.24,-0.41,-1.51 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.6,-4.7 22 50507347 rs7511496 T G 100 PASS AVGPOST=0.9927;AA=G;AN=2184;RSQ=0.9705;THETA=0.0005;VT=SNP;LDAF=0.1142;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=247;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.05,-0.94,-5 1|0:1:-0.2,-0.45,-2.14 0|0:0:-0.07,-0.82,-5 0|0:0:-1.07,-0.04,-5 0|0:0:-0.04,-1.04,-5 22 50507358 rs7510819 G A 100 PASS THETA=0.0023;AC=248;AA=G;AN=2184;ERATE=0.0009;VT=SNP;LDAF=0.1138;SNPSOURCE=LOWCOV;RSQ=0.9756;AVGPOST=0.994;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.03,-1.12,-5 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.08 0|0:0.05:-0.02,-1.37,-5 0|0:0:-0.06,-0.87,-5 22 50507407 rs7511240 C T 100 PASS AC=253;AA=C;THETA=0.0004;LDAF=0.1204;AN=2184;ERATE=0.0025;VT=SNP;RSQ=0.9403;SNPSOURCE=LOWCOV;AVGPOST=0.9844;AF=0.12;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.05,-0.94,-5 1|0:1:-0.43,-0.46,-0.55 0|0:0:-0.48,-0.48,-0.48 1|0:1:-4.1,-0,-4.4 0|0:0:-0.2,-0.44,-2.61 22 50507527 rs4292181 A C 100 PASS 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ERATE=0.0004;AA=C;AN=2184;AC=26;VT=SNP;AVGPOST=0.9976;THETA=0.003;SNPSOURCE=LOWCOV;LDAF=0.0128;RSQ=0.9131;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.08,-0.77,-5 0|0:0.05:-0.04,-1.08,-5 0|0:0:-0.02,-1.38,-5 22 50507849 rs141310305 G A 100 PASS THETA=0.0009;AVGPOST=0.9985;LDAF=0.0021;AA=G;AN=2184;VT=SNP;RSQ=0.6898;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.2,-0.44,-2.15 0|0:0:-0.08,-0.78,-5 22 50507872 rs181969448 G A 100 PASS THETA=0.0014;AC=28;AA=G;AN=2184;LDAF=0.0239;VT=SNP;RSQ=0.4327;SNPSOURCE=LOWCOV;ERATE=0.0084;AVGPOST=0.9678;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.08,-0.79,-5 0|0:0.1:-0.16,-0.52,-2.24 0|0:0:-0.13,-0.6,-3.92 0|0:0:-0.07,-0.83,-5 22 50507916 rs113397439 G A 100 PASS 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ERATE=0.0004;AC=248;LDAF=0.1145;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.9967;AVGPOST=0.9992;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.01,-1.5,-5 1|0:1:-5,0,-5 0|0:0:-0,-3.08,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0,-2.25,-5 22 50508192 rs5771144 C A 100 PASS ERATE=0.0005;AA=C;AC=248;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9948;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.1146;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.01,-1.73,-5 1|0:1:-5,0,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.65,-5 0|0:0:-0,-3.13,-5 22 50508205 rs146858469 G A 100 PASS AC=12;ERATE=0.0005;RSQ=0.9063;THETA=0.0004;AA=G;AN=2184;LDAF=0.0057;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-3.38,-5 22 50508329 rs190652398 G A 100 PASS AVGPOST=0.9963;THETA=0.0014;RSQ=0.475;AA=G;AN=2184;VT=SNP;LDAF=0.0029;SNPSOURCE=LOWCOV;AC=3;ERATE=0.0007;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.12,-0.61,-3.92 0|0:0:-0.07,-0.82,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.04,-1.02,-5 22 50508331 rs5771145 T C 100 PASS ERATE=0.0004;AA=C;AC=248;LDAF=0.1145;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.9962;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.01,-1.48,-5 1|0:1:-2.28,-0.02,-1.47 0|0:0:-0.07,-0.83,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.04,-1.01,-5 22 50508349 rs5771351 G A 100 PASS RSQ=0.9886;THETA=0.0004;AA=G;AN=2184;VT=SNP;ERATE=0.001;LDAF=0.1169;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=252;AF=0.12;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.09;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.03,-1.18,-5 1|0:1:-0.2,-0.44,-2.03 0|0:0:-0.12,-0.63,-3.21 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.11,-0.63,-4 22 50508428 rs5771352 C G 100 PASS 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AC=18;AA=T;AN=2184;AVGPOST=0.9952;THETA=0.0008;VT=SNP;RSQ=0.8112;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0104;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.37,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.48,-0.48,-0.48 22 50508586 rs2076128 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.1141;VT=SNP;THETA=0.0006;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.995;AC=247;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.07,-0.83,-5 1|0:1:-1.96,-0.07,-0.86 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.16,-0.51,-2.58 0|0:0:-0.04,-1.05,-5 22 50508672 rs2076129 A T 100 PASS ERATE=0.0005;AC=347;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.9923;AA=A;LDAF=0.1588;AVGPOST=0.997;SNPSOURCE=LOWCOV;AF=0.16;ASN_AF=0.33;AMR_AF=0.13;AFR_AF=0.05;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.01,-1.86,-5 22 50508702 rs2076130 A C 100 PASS 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0|0:0:-0.11,-0.65,-4.7 22 50511538 rs6010256 C T 100 PASS AN=2184;RSQ=0.9744;AVGPOST=0.9944;VT=SNP;ERATE=0.0011;LDAF=0.1021;SNPSOURCE=LOWCOV;AA=N;AC=218;THETA=0.0003;AF=0.1;ASN_AF=0.1;AMR_AF=0.14;AFR_AF=0.06;EUR_AF=0.11 GT:DS:GL 0|0:0.3:-0.11,-0.67,-4.7 1|0:1:-3.01,-0.48,-0.17 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.14,-0.55,-3.42 0|0:0:-0.11,-0.64,-4.7 22 50511704 rs73893126 A G 100 PASS ERATE=0.0004;RSQ=0.9934;AN=2184;AC=132;LDAF=0.0606;THETA=0.0005;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AA=a;AF=0.06;AMR_AF=0.04;AFR_AF=0.24 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.19,-5 0|0:0:-0,-2.87,-5 0|0:0:-0.01,-1.93,-5 22 50511746 rs5771359 C T 100 PASS AVGPOST=0.9986;AN=2184;LDAF=0.1009;THETA=0.0005;VT=SNP;AA=c;RSQ=0.9938;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=218;AF=0.1;ASN_AF=0.1;AMR_AF=0.14;AFR_AF=0.06;EUR_AF=0.11 GT:DS:GL 0|0:0:-0,-2.05,-5 1|0:1:-5,-1.06,-0.04 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.64,-5 22 50511747 rs181775651 C T 100 PASS ERATE=0.0004;AVGPOST=0.9994;AN=2184;VT=SNP;AA=c;RSQ=0.601;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.03,-1.22,-5 0|0:0:-0.02,-1.39,-5 22 50511787 rs79770795 G A 100 PASS AVGPOST=0.9994;AA=g;LDAF=0.0042;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.9343;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.01,-1.61,-5 22 50511797 rs186432615 C A 100 PASS AN=2184;VT=SNP;AA=c;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;RSQ=0.6526;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.59,-5 0|0:0:-0.06,-0.89,-3.85 0|0:0:-0.07,-0.81,-3.28 0|0:0:-0.02,-1.36,-5 0|0:0:-0.02,-1.4,-5 22 50511807 rs116843943 C T 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;AC=89;VT=SNP;AA=c;AVGPOST=0.9971;LDAF=0.0415;RSQ=0.9734;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.12;AMR_AF=0.05;AFR_AF=0.0041 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1|0:1:-4,-0,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50512112 rs149225277 G A 100 PASS AC=47;THETA=0.0002;RSQ=0.9838;AA=G;AN=2184;LDAF=0.0219;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.05,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.01,-1.62,-5 22 50512116 rs9617144 T G 100 PASS AA=G;AN=2184;AVGPOST=0.9981;THETA=0.0005;VT=SNP;AC=351;RSQ=0.9938;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.1607;AF=0.16;ASN_AF=0.23;AMR_AF=0.22;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|1:1:-0.04,-1.06,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.86,-5 22 50512335 rs7290280 A G 100 PASS LDAF=0.0052;THETA=0.0014;AN=2184;RSQ=0.8691;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0006;AVGPOST=0.9982;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.04,-1.08,-5 22 50512357 rs181550951 A C 100 PASS ERATE=0.0004;AN=2184;RSQ=0.5081;LDAF=0.001;VT=SNP;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.58,-5 22 50512494 rs187096547 C G 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.42,-5 22 50512514 rs2272832 T G 100 PASS AA=G;AN=2184;AC=1261;ERATE=0.0025;AVGPOST=0.9947;VT=SNP;RSQ=0.9924;LDAF=0.5766;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.58;ASN_AF=0.37;AMR_AF=0.64;AFR_AF=0.82;EUR_AF=0.55 GT:DS:GL 1|1:2:-5,-4.22,-0 1|1:2:-5,-3.17,-0 0|0:0:-0,-4.7,-5 1|0:1:-5,-0,-3.85 0|0:0:-0,-3.25,-5 22 50512545 rs191079330 C G 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8218;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 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G A 100 PASS AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50512758 rs147572634 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0014;AC=3;AVGPOST=0.9999;RSQ=0.9693;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50512761 . C A 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50512770 . G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50513075 rs142062713 T C 100 PASS AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.62;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.77,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.07,-0.85,-5 22 50513191 rs145824578 G A 100 PASS RSQ=0.4282;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AVGPOST=0.9984;LDAF=0.0012;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.71,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.17,-0.49,-2.78 0|0:0:-0.48,-0.48,-0.48 22 50513216 rs138735328 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.5013;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.12,-0.61,-3.11 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50513225 rs35691975 TG T 309 PASS ERATE=0.0005;LDAF=0.1571;RSQ=0.9881;AN=2184;AC=341;VT=INDEL;AVGPOST=0.9961;THETA=0.0003;AF=0.16;ASN_AF=0.21;AMR_AF=0.17;AFR_AF=0.02;EUR_AF=0.2 GT:DS:GL 0|0:0:0,-0.3,-4.5 0|0:0:0,0,0 1|0:1:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50513316 rs187431380 T C 100 PASS AVGPOST=0.9994;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.5932;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.59,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.32,-5 22 50513405 rs5771362 A C 100 PASS LDAF=0.3257;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9953;AC=711;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9919;AF=0.33;ASN_AF=0.33;AMR_AF=0.36;AFR_AF=0.43;EUR_AF=0.24 GT:DS:GL 0|0:0:-0.01,-1.76,-5 1|1:2:-5,-1.87,-0.01 0|0:0:-0,-2.11,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.63,-5 22 50513535 rs76093749 C T 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.7162;LDAF=0.0157;SNPSOURCE=LOWCOV;AC=27;ERATE=0.0003;AVGPOST=0.9874;AF=0.01;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.31,-0.29,-5 0|0:0.1:-0.13,-0.58,-2.96 0|0:0:-0.08,-0.77,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.11,-0.65,-4.7 22 50513631 rs6010258 C A 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=c;ERATE=0.0019;RSQ=0.9481;AC=348;LDAF=0.1599;SNPSOURCE=LOWCOV;AVGPOST=0.9803;AF=0.16;ASN_AF=0.01;AMR_AF=0.19;AFR_AF=0.1;EUR_AF=0.3 GT:DS:GL 1|1:2:-5,-0.56,-0.14 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.98,-5 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50513712 rs189693696 A T 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;LDAF=0.001;VT=SNP;AA=A;AVGPOST=0.9989;RSQ=0.4536;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.02,-1.4,-5 22 50513714 rs5771150 T G 100 PASS ERATE=0.0005;LDAF=0.6097;AC=1334;THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9918;RSQ=0.988;SNPSOURCE=LOWCOV;AF=0.61;ASN_AF=0.37;AMR_AF=0.66;AFR_AF=0.86;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-1.67,-0.01 1|1:2:-5,-0.72,-0.09 0|0:0:-0,-2.01,-5 1|0:1:-5,-0,-2.97 0|0:0:-0.01,-1.64,-5 22 50513778 rs182330722 G A 100 PASS ERATE=0.0004;THETA=0.0002;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6171;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.01,-1.63,-5 22 50513784 rs9617060 G A 100 PASS AN=2184;THETA=0.0005;VT=SNP;AC=351;AA=A;RSQ=0.9956;LDAF=0.1604;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9987;AF=0.16;ASN_AF=0.23;AMR_AF=0.22;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0,-3.42,-5 0|1:1:-1.44,-0.02,-4.7 0|0:0:-0.07,-0.82,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0.01,-1.62,-5 22 50513871 rs6010259 C T 100 PASS ERATE=0.0004;RSQ=0.9902;AA=C;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.1965;SNPSOURCE=LOWCOV;AC=428;AVGPOST=0.996;AF=0.2;ASN_AF=0.12;AMR_AF=0.23;AFR_AF=0.1;EUR_AF=0.3 GT:DS:GL 1|1:2:-5,-0.86,-0.06 0|0:0:-0.04,-1.06,-5 0|0:0:-0.12,-0.6,-3.8 1|0:1:-1.88,-0.01,-3.62 0|0:0:-0.06,-0.87,-5 22 50513967 rs187699440 G A 100 PASS RSQ=0.3376;AVGPOST=0.9977;LDAF=0.0016;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.11,-0.64,-4.7 0|0:0:-0.19,-0.45,-2.13 0|0:0:-0.07,-0.8,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.04,-1.05,-5 22 50514120 rs10696011 C CAG 794 PASS RSQ=0.7521;THETA=0.0004;AN=2184;AVGPOST=0.9952;VT=INDEL;ERATE=0.0006;AC=2171;LDAF=0.9919;AF=0.99;ASN_AF=1;AMR_AF=1;AFR_AF=1;EUR_AF=0.98 GT:DS:GL 1|1:2:-33.7,-1.8,0 1|1:2:0,0,0 1|1:2:0,0,0 1|1:2:-10.3,-0.6,0 1|1:2:0,0,0 22 50514376 rs150355816 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.6077;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.47,-5 0|0:0:-0,-2.43,-5 0|0:0:-0.01,-1.63,-5 22 50514398 rs58026340 C G 100 PASS AA=C;THETA=0.0004;AN=2184;AC=89;VT=SNP;AVGPOST=0.998;LDAF=0.0411;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9804;AF=0.04;ASN_AF=0.12;AMR_AF=0.05;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.12,-0.63,-4.4 0|0:0:-0.02,-1.31,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.67,-5 22 50514453 rs192614989 G A 100 PASS AA=G;AN=2184;THETA=0.0001;AVGPOST=0.9996;LDAF=0.0015;VT=SNP;RSQ=0.8845;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.01,-1.63,-5 0|0:0:-0,-3.92,-5 22 50514461 rs9617145 T C 100 PASS ERATE=0.0004;LDAF=0.1625;AA=C;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=355;RSQ=0.9968;THETA=0.0003;AF=0.16;ASN_AF=0.23;AMR_AF=0.21;AFR_AF=0.08;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|1:1:-5,0,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-4.4,-5 22 50514505 rs185057413 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;RSQ=0.7683;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.7,-5 0|0:0:-0,-4.4,-5 22 50514611 rs72571103 C CAT 769 PASS LDAF=0.1646;AVGPOST=0.9983;THETA=0.0004;AN=2184;VT=INDEL;AC=360;RSQ=0.9948;ERATE=0.0006;AF=0.16;ASN_AF=0.23;AMR_AF=0.22;AFR_AF=0.08;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-0.9,-13.8 0|1:1:0,0,0 0|0:0:0,-0.3,-3.7 0|0:0:0,-0.9,-13.8 0|0:0:0,0,0 22 50514655 rs75982207 A G 100 PASS AC=7;ERATE=0.0004;RSQ=0.8767;AN=2184;LDAF=0.0032;VT=SNP;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.32,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.01,-1.86,-5 22 50514712 rs111816898 G A 100 PASS AVGPOST=0.9933;AC=223;AA=G;AN=2184;VT=SNP;ERATE=0.0017;THETA=0.0006;LDAF=0.1046;SNPSOURCE=LOWCOV;RSQ=0.972;AF=0.1;ASN_AF=0.09;AMR_AF=0.13;AFR_AF=0.07;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.06,-0.9,-5 1|0:1:-5,-0,-1.96 0|0:0:-0.03,-1.2,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.08,-0.77,-5 22 50514899 rs9628280 A G 100 PASS THETA=0.0004;AVGPOST=0.9663;AA=G;AN=2184;RSQ=0.95;ERATE=0.0068;LDAF=0.5445;VT=SNP;AC=1200;SNPSOURCE=LOWCOV;AF=0.55;ASN_AF=0.36;AMR_AF=0.62;AFR_AF=0.73;EUR_AF=0.54 GT:DS:GL 1|1:2:-5,-0.67,-0.11 0|1:1:-3.92,-0,-2.67 0|1:0.6:-0.22,-0.42,-1.81 1|0:1:-5,-0,-4.4 0|0:0.35:-0.97,-0.05,-3.27 22 50515006 rs9628322 G A 100 PASS RSQ=0.9911;AVGPOST=0.9994;LDAF=0.0276;AA=g;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=60;ERATE=0.0003;AF=0.03;AMR_AF=0.0028;AFR_AF=0.12 GT:DS:GL 0|0:0:-0,-2.21,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.37,-5 22 50515050 rs77008044 C G 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.9531;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=3;AVGPOST=0.9999;THETA=0.0003;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.65,-5 0|0:0:-0,-2.13,-5 0|0:0:-0,-4.7,-5 22 50515082 rs188721563 G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.8803;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.16,-5 0|0:0:-0,-2.43,-5 0|0:0:-0,-4.7,-5 22 50515125 rs192560281 A G 100 PASS THETA=0.0002;AN=2184;VT=SNP;AA=A;RSQ=0.889;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50515182 rs76282126 A C 100 PASS AC=7;ERATE=0.0005;AVGPOST=1;AN=2184;LDAF=0.0032;VT=SNP;THETA=0.0006;AA=A;RSQ=1;SNPSOURCE=LOWCOV;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515185 rs184899868 C T 100 PASS LDAF=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.8999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515186 rs189785025 G A 100 PASS ERATE=0.0005;THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9997;RSQ=0.8824;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515190 rs139999640 T C 100 PASS THETA=0.0002;AA=T;AN=2184;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AVGPOST=0.9999;RSQ=0.9693;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515213 rs191396436 C T 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515226 . C T 100 PASS LDAF=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.8999;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515236 rs58496403 T C 100 PASS AVGPOST=1;AC=131;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=1;ERATE=0.0003;LDAF=0.0599;THETA=0.0003;AF=0.06;AMR_AF=0.04;AFR_AF=0.24 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515270 rs6010164 T C 100 PASS RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;AC=246;LDAF=0.1134;THETA=0.0003;AF=0.11;ASN_AF=0.1;AMR_AF=0.14;AFR_AF=0.12;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515273 rs6010165 G A 100 PASS RSQ=0.9982;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;ERATE=0.0003;AVGPOST=0.9995;AC=246;LDAF=0.1134;AF=0.11;ASN_AF=0.1;AMR_AF=0.14;AFR_AF=0.12;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515330 rs141964804 A C 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515385 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515459 rs4838882 G A 100 PASS AN=2184;LDAF=0.9203;VT=SNP;RSQ=0.9972;AA=A;SNPSOURCE=LOWCOV;AC=2011;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.92;ASN_AF=0.91;AMR_AF=0.93;AFR_AF=0.95;EUR_AF=0.91 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-3.74,-0 1|1:2:-5,-3.66,-0 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50515519 rs183926683 A T 100 PASS AVGPOST=1;LDAF=0.0004;AN=2184;RSQ=0.95;THETA=0.0008;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.28,-5 0|0:0:-0,-2.85,-5 0|0:0:0,-5,-5 22 50515636 rs146322059 C T 100 PASS THETA=0.0009;ERATE=0.0004;AA=T;AN=2184;RSQ=0.8106;VT=SNP;AC=14;SNPSOURCE=LOWCOV;AVGPOST=0.996;LDAF=0.008;AF=0.01;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.14,-0.56,-1.97 0|0:0:-0,-1.96,-5 0|0:0:-0.01,-1.72,-5 22 50515637 rs189389154 G A 100 PASS THETA=0.0002;AA=G;AN=2184;AC=13;VT=SNP;AVGPOST=0.9993;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9446;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.08,-0.79,-3.15 0|0:0:-0,-1.97,-5 0|0:0:-0.01,-1.66,-5 22 50515677 rs6010166 C T 100 PASS AC=316;AA=C;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.9978;SNPSOURCE=LOWCOV;LDAF=0.1444;ERATE=0.0003;AF=0.14;ASN_AF=0.0035;AMR_AF=0.18;AFR_AF=0.05;EUR_AF=0.3 GT:DS:GL 1|1:2:-5,-1.48,-0.01 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.14,-0.56,-2.71 1|0:1:-5,0,-5 0|0:0:-0,-2.48,-5 22 50515766 rs2076137 C T 100 PASS AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;AC=355;AVGPOST=0.9999;LDAF=0.1622;THETA=0.0003;AF=0.16;ASN_AF=0.23;AMR_AF=0.22;AFR_AF=0.08;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-5,-5 0|1:1:-5,0,-5 0|0:0:-0.05,-1,-4.22 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 22 50515808 rs2072874 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.1627;VT=SNP;RSQ=0.9998;AC=356;ERATE=0.0003;AF=0.16;ASN_AF=0.23;AMR_AF=0.22;AFR_AF=0.08;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-4.7,-5 0|1:1:-5,-0.03,-1.21 0|0:0:-0.97,-0.05,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515843 rs6010260 C A 100 PASS AVGPOST=1;AA=C;THETA=0.0002;LDAF=0.1015;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=220;VT=SNP;RSQ=1;ERATE=0.0003;AF=0.1;ASN_AF=0.1;AMR_AF=0.14;AFR_AF=0.07;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50515966 . C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.7571;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.02,-1.26,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50515977 . C T 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0007;RSQ=0.6963;SNPSOURCE=EXOME;AC=1;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0.05:-0.12,-0.62,-2.42 0|0:0:-0.08,-0.79,-3.18 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 22 50516040 rs8140595 C T 100 PASS AA=C;LDAF=0.0092;AN=2184;AC=20;VT=SNP;RSQ=0.9952;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.44,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.2,-0.45,-2.01 0|0:0:-0,-2.09,-5 0|0:0:-0,-4.22,-5 22 50516110 rs142911695 G T 100 PASS AC=7;AA=G;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0038;RSQ=0.8695;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.0032;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.01,-1.74,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.02,-1.38,-5 22 50516195 rs137926 T C 100 PASS THETA=0.0023;LDAF=0.1537;AA=T;AN=2184;VT=SNP;RSQ=0.9938;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=335;AVGPOST=0.9982;AF=0.15;ASN_AF=0.21;AMR_AF=0.17;AFR_AF=0.02;EUR_AF=0.19 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RSQ=0.9329;AA=G;AN=2184;AVGPOST=0.9952;VT=SNP;ERATE=0.001;LDAF=0.0303;SNPSOURCE=LOWCOV;AC=63;THETA=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.24,-0.4,-1.5 0|0:0:-0.14,-0.56,-3.14 0|0:0:-0.18,-0.48,-2.17 0|0:0:-0.14,-0.56,-4 22 50516710 rs181995608 G A 100 PASS LDAF=0.0013;THETA=0.0002;AA=G;AN=2184;VT=SNP;RSQ=0.389;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;AVGPOST=0.9982;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.24,-0.4,-1.51 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50516715 rs186619155 C T 100 PASS ERATE=0.0004;RSQ=0.7422;AA=C;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.25,-0.4,-1.42 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50516906 rs190241052 G A 100 PASS AVGPOST=0.9986;LDAF=0.0021;AA=G;AN=2184;RSQ=0.7601;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.79,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0.11,-0.64,-4.1 22 50516917 rs181892989 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9979;AC=8;LDAF=0.0043;VT=SNP;RSQ=0.7973;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0.06,-0.86,-5 0|0:0:-0.11,-0.64,-4.1 22 50516920 rs186481365 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9947;VT=SNP;SNPSOURCE=LOWCOV;AC=4;RSQ=0.5127;LDAF=0.0045;THETA=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.27,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.64,-4 22 50516971 rs190235520 C T 100 PASS AVGPOST=0.9945;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=10;RSQ=0.6751;SNPSOURCE=LOWCOV;LDAF=0.0065;ERATE=0.0006;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.58,-5 0|0:0:-0.22,-0.42,-1.67 0|0:0:-0.17,-0.5,-2.45 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50517037 rs182124182 G A 100 PASS AA=G;AN=2184;RSQ=0.4013;VT=SNP;ERATE=0.0011;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9931;LDAF=0.0045;THETA=0.0003;AF=0.0023;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.88,-5 0|0:0:-0.2,-0.43,-2.57 22 50517061 rs185161194 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9805;ERATE=0.0047;RSQ=0.5067;VT=SNP;LDAF=0.0166;SNPSOURCE=LOWCOV;AC=21;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.64,-4.22 1|0:0.95:-2.25,-0.01,-1.81 0|0:0:-0.25,-0.4,-1.45 0|0:0:-0.07,-0.85,-5 0|0:0:-0.13,-0.58,-4.1 22 50517099 rs190756753 C T 100 PASS AA=C;THETA=0.0014;AN=2184;AVGPOST=0.9944;RSQ=0.4356;VT=SNP;LDAF=0.0039;SNPSOURCE=LOWCOV;AC=3;ERATE=0.0007;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.16,-0.51,-2.89 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.04,-1.05,-5 0|0:0:-0.2,-0.44,-2.11 0|0:0:-0.12,-0.62,-4.4 22 50517231 rs184090620 G A 100 PASS 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C T 100 PASS AVGPOST=1;AA=C;THETA=0.0014;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50521564 rs78365284 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=1;ERATE=0.0003;THETA=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50521582 . C G 100 PASS AVGPOST=1;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50521642 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50521734 rs144951333 A G 100 PASS LDAF=0.0066;AN=2184;AVGPOST=0.9996;VT=SNP;AA=A;AC=14;ERATE=0.0008;RSQ=0.9736;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-2.89,-5 0|0:0:-0.01,-1.89,-5 0|0:0:-0.01,-1.9,-5 22 50521775 rs9617062 C T 100 PASS ERATE=0.0004;LDAF=0.2313;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;AC=505;THETA=0.0006;RSQ=0.9978;SNPSOURCE=LOWCOV;AF=0.23;ASN_AF=0.3;AMR_AF=0.3;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.68,-5 1|1:2:-5,-1.01,-0.04 0|0:0:-0.05,-1,-4.22 0|0:0:-0.09,-0.73,-5 0|0:0:-0.11,-0.66,-5 22 50521781 rs9617147 C A 100 PASS 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AA=C;LDAF=0.1736;AN=2184;THETA=0.0001;ERATE=0.0009;VT=SNP;RSQ=0.9816;SNPSOURCE=LOWCOV;AVGPOST=0.9931;AC=376;AF=0.17;ASN_AF=0.33;AMR_AF=0.13;AFR_AF=0.04;EUR_AF=0.16 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.07,-0.84,-4.4 0|1:1:-1.76,-0.02,-1.45 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0.01,-1.89,-5 22 50522476 rs144796314 G A 100 PASS AVGPOST=0.9986;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5369;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-1.34,-0.02,-5 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0,-2.24,-5 22 50522524 rs73185306 C T 100 PASS ERATE=0.0004;LDAF=0.0729;AA=C;AVGPOST=0.9994;THETA=0.0004;AN=2184;RSQ=0.996;VT=SNP;SNPSOURCE=LOWCOV;AC=158;AF=0.07;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.68,-5 1|0:1:-1.59,-0.01,-4 0|0:0:-0,-2.17,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.07,-5 22 50522529 rs75672532 C T 100 PASS 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AA=C;THETA=0.0002;AN=2184;RSQ=0.3841;VT=SNP;ERATE=0.001;LDAF=0.0019;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0.14,-0.57,-3.49 0|0:0:-0.21,-0.43,-1.92 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.02,-1.45,-5 22 50522804 rs188997977 G A 100 PASS ERATE=0.0004;RSQ=0.5072;AA=G;AN=2184;THETA=0.0008;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.03,-1.17,-5 22 50522930 rs117090329 A G 100 PASS LDAF=0.0728;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9975;AC=158;AF=0.07;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-0.07,-0.83,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-2.94,-5 22 50523078 rs55751312 C T 100 PASS AA=C;THETA=0.0002;AN=2184;AC=46;VT=SNP;RSQ=0.9978;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.021;AF=0.02;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.05 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523101 rs145633396 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.9531;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AVGPOST=0.9999;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523120 . G A 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523140 rs148099137 T C 100 PASS THETA=0.0004;RSQ=0.9181;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523237 . G A 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523238 rs193115579 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.8218;AVGPOST=0.9998;LDAF=0.0006;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523239 . G A 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;AA=G;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523256 . C T 100 PASS ERATE=0.0005;AA=C;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.8965;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.24,-5 0|0:0:-0.01,-1.66,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523267 rs184241759 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;LDAF=0.0015;VT=SNP;RSQ=0.9149;AC=3;ERATE=0.0007;THETA=0.0003;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.56,-5 0|0:0:-0.02,-1.43,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523297 . T G 100 PASS AVGPOST=1;THETA=0.0002;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.62,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50523404 rs141840641 A T 100 PASS THETA=0.0002;AN=2184;AC=6;VT=SNP;RSQ=0.9852;AA=A;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.77,-5 0|0:0:0,-5,-5 22 50523407 rs9628323 A G 100 PASS ERATE=0.0005;RSQ=0.9917;THETA=0.0004;AN=2184;AC=84;VT=SNP;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.0388;AF=0.04;AMR_AF=0.0028;AFR_AF=0.17 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.76,-5 0|0:0:0,-5,-5 22 50523417 rs11568171 G A 100 PASS THETA=0.0004;AN=2184;LDAF=0.0727;VT=SNP;AA=A;RSQ=0.9994;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AC=158;AF=0.07;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:-0,-3.22,-5 0|0:0:-0,-2.24,-5 0|0:0:0,-5,-5 22 50523433 rs137930 T C 100 PASS AA=T;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.1713;RSQ=0.9981;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=374;AVGPOST=0.9992;AF=0.17;ASN_AF=0.02;AMR_AF=0.23;AFR_AF=0.07;EUR_AF=0.32 GT:DS:GL 1|1:2:-5,-5,0 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.51,-5 1|0:1:-5,-0.04,-1.11 0|0:0:-0,-3.85,-5 22 50523547 rs188951550 A C 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;RSQ=0.7453;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.27,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-2.34,-5 22 50523670 rs150630892 G A 100 PASS AC=17;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.8934;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.008;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0,-2.48,-5 22 50523745 rs28362607 A G 100 PASS 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0|0:0:-0,-3.59,-5 0|0:0:-0,-3.06,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0,-4.7,-5 22 50524102 rs143181896 T C 100 PASS ERATE=0.0004;LDAF=0.0009;THETA=0.0004;AA=T;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.6274;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.23,-0.39,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-3.7,-5 22 50524191 rs117812810 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9997;LDAF=0.0015;VT=SNP;RSQ=0.9149;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.02,-1.42,-5 0|1:1:-5,-0.01,-1.72 22 50524250 rs11447701 G GC 895 PASS ERATE=0.0013;THETA=0.0004;AN=2184;AC=1470;VT=INDEL;RSQ=0.9826;LDAF=0.6714;AVGPOST=0.9906;AF=0.67;ASN_AF=0.58;AMR_AF=0.77;AFR_AF=0.61;EUR_AF=0.74 GT:DS:GL 1|1:2:-29.2,-2.1,0 1|1:1.95:0,0,0 1|0:1:0,0,0 1|0:0.95:0,-0.6,-7.2 0|0:0:0,0,0 22 50524285 rs4838883 C T 100 PASS 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C CT 242 PASS RSQ=0.9785;AC=516;AVGPOST=0.9902;AN=2184;ERATE=0.0009;VT=INDEL;THETA=0.0005;LDAF=0.2341;AF=0.24;ASN_AF=0.3;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-1.5,-21 1|1:1.8:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-8.4 0|0:0:0,-0.3,-3.7 22 50532001 rs9617019 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9967;VT=SNP;AC=524;RSQ=0.9925;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;LDAF=0.2402;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.22,-5 1|1:2:-2.62,-0.41,-0.22 0|0:0:-0.07,-0.82,-4.7 0|0:0:-0.02,-1.46,-5 0|0:0.05:-0.01,-1.81,-5 22 50532061 rs188452957 C G 100 PASS AVGPOST=0.9985;AA=C;LDAF=0.0016;AN=2184;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;RSQ=0.6588;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.98,-5 0|0:0:-0.13,-0.58,-2.68 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.01,-1.65,-5 0|0:0:-0.01,-1.76,-5 22 50532283 rs713807 G T 100 PASS 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PASS THETA=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;RSQ=0.9267;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.01,-1.66,-5 22 50532782 rs8138886 C T 100 PASS ERATE=0.0004;LDAF=0.2401;AA=T;AN=2184;RSQ=0.9977;VT=SNP;AC=524;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-1.09,-0.04,-5 1|1:2:-5,-1.28,-0.02 0|0:0:-0,-3.18,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.09,-5 22 50532807 rs117157149 T G 100 PASS ERATE=0.0004;AA=T;AN=2184;LDAF=0.011;VT=SNP;AC=22;RSQ=0.8297;SNPSOURCE=LOWCOV;AVGPOST=0.995;THETA=0.0003;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.01,-1.65,-5 22 50532980 rs7288788 C T 100 PASS AA=C;AC=85;AN=2184;AVGPOST=0.9979;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.9766;LDAF=0.0399;THETA=0.0003;AF=0.04;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50533030 rs4838821 G A 100 PASS RSQ=0.9926;AVGPOST=0.9966;AA=G;AN=2184;AC=523;THETA=0.0005;LDAF=0.2389;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.2,-5 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.11 0|0:0:-0.48,-0.48,-0.48 22 50533045 rs60512382 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;LDAF=0.0026;RSQ=0.6254;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.12 0|0:0:-0.48,-0.48,-0.48 22 50533049 rs9308230 C T 100 PASS ERATE=0.0005;AN=2184;AC=382;VT=SNP;AA=c;THETA=0.0006;RSQ=0.9912;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.1743;AF=0.17;ASN_AF=0.0035;AMR_AF=0.19;AFR_AF=0.18;EUR_AF=0.3 GT:DS:GL 1|1:2:-2.94,-0.46,-0.19 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.15 1|0:1:-2.58,-0.45,-0.19 0|0:0:-0.48,-0.48,-0.48 22 50533076 rs113748704 C T 100 PASS LDAF=0.0027;AA=C;AN=2184;AC=6;VT=SNP;RSQ=0.6327;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9974;THETA=0.0003;AF=0.0027;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.12,-0.62,-3.8 0|0:0:-0.02,-1.31,-5 0|0:0:-0.13,-0.59,-3.52 22 50533114 rs4838822 A T 100 PASS AC=525;AN=2184;AVGPOST=0.9981;LDAF=0.2399;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9955;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.8,-5 1|1:2:-3.04,-0.48,-0.17 0|0:0:-0.01,-1.73,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.07,-0.85,-5 22 50533186 . A AT 164 PASS ERATE=0.0005;THETA=0.0004;AN=2184;AVGPOST=0.9962;VT=INDEL;LDAF=0.0084;AC=15;RSQ=0.8183;AF=0.01;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.5,-19.5 0|0:0:0,0,0 0|0:0.1:0,-0.9,-8.4 0|0:0:0,0,0 0|0:0:0,0,0 22 50533274 rs145022597 C G 100 PASS AC=47;AA=C;AN=2184;LDAF=0.0216;VT=SNP;RSQ=0.9961;AVGPOST=0.9998;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-2.35,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.1,-5 22 50533311 rs111521002 A G 100 PASS ERATE=0.0004;LDAF=0.0009;AN=2184;RSQ=0.7691;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.58,-5 0|0:0:-0,-2.88,-5 0|0:0:-0,-3.4,-5 0|0:0:-0.18,-0.46,-2.43 0|0:0:-0.01,-1.87,-5 22 50533381 rs148688985 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;LDAF=0.0007;AC=0;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.1862;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:-0,-2.3,-5 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0|0:0:-0.03,-1.15,-5 0|0:0:-0.01,-1.49,-5 22 50533548 rs189336511 G A 100 PASS THETA=0.0004;AA=G;AN=2184;RSQ=0.8504;VT=SNP;AVGPOST=0.9991;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.17,-0.48,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.01,-1.58,-5 22 50533747 rs9617021 G A 100 PASS ERATE=0.0004;LDAF=0.2416;AA=G;AN=2184;VT=SNP;AC=527;SNPSOURCE=LOWCOV;RSQ=0.9967;THETA=0.0003;AVGPOST=0.9982;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.12;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.48,-5 1|1:2:-5,-2.48,-0 0|0:0:0,-5,-5 0|0:0:-0,-2.36,-5 0|0:0:-0,-2.34,-5 22 50533760 rs118128463 G A 100 PASS ERATE=0.0004;LDAF=0.0103;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;AC=22;THETA=0.0006;RSQ=0.981;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.32,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.87,-5 22 50533874 rs115387762 C T 100 PASS RSQ=0.8763;AA=C;AN=2184;LDAF=0.0054;THETA=0.0005;VT=SNP;AC=10;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-3.47,-5 0|0:0:-0,-2.82,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-2.07,-5 22 50533967 rs181991760 T C 100 PASS THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-2.87,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.04,-1.02,-5 22 50534045 rs186782583 T G 100 PASS AVGPOST=1;THETA=0.0002;AA=T;AN=2184;RSQ=0.9844;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0,-3.66,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.01,-1.88,-5 22 50534094 rs141504156 C T 100 PASS ERATE=0.0004;LDAF=0.0009;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0027;RSQ=0.5907;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.01,-1.53,-5 22 50534261 rs147041528 A C 100 PASS LDAF=0.0024;RSQ=0.9469;AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-3.17,-5 22 50534279 rs190027625 A G 100 PASS AVGPOST=0.9994;THETA=0.0004;AN=2184;RSQ=0.8364;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0012;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-3.44,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.91,-5 22 50534291 rs147687262 T C 100 PASS AA=T;AN=2184;LDAF=0.004;AC=8;THETA=0.0008;VT=SNP;RSQ=0.9199;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-4,-5 0|0:0:-0,-3.66,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0,-2.87,-5 22 50534390 rs182146449 C T 100 PASS AVGPOST=0.9986;AA=C;AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.6383;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-3.07,-5 22 50534444 rs186335524 G C 100 PASS THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7282;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.84,-5 22 50534540 rs75628730 C T 100 PASS RSQ=0.9098;AA=C;THETA=0.0002;AN=2184;VT=SNP;AC=24;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0115;AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.19,-0.46,-2.06 0|0:0:-0,-2.08,-5 22 50534547 rs191531817 A G 100 PASS AVGPOST=0.9994;THETA=0.0004;AN=2184;RSQ=0.6307;VT=SNP;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-2.12,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0,-2.34,-5 22 50534582 rs9617070 C A 100 PASS LDAF=0.242;AN=2184;RSQ=0.9976;VT=SNP;AA=A;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=529;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.12;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.79,-5 1|1:2:-5,-3.66,-0 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-3.14,-5 22 50534687 rs150242190 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;LDAF=0.001;VT=SNP;RSQ=0.8101;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.74,-5 0|0:0:0,-5,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.02,-1.3,-5 22 50534793 rs138916282 A G 100 PASS AN=2184;RSQ=0.8411;VT=SNP;THETA=0.0006;AA=A;LDAF=0.0029;AC=5;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-3.36,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.85,-5 22 50534835 rs143795611 G C 100 PASS RSQ=0.951;AA=G;AN=2184;VT=SNP;LDAF=0.0019;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;THETA=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.91,-5 0|0:0:-0,-2.42,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.83,-5 22 50534874 rs79671030 A G 100 PASS AN=2184;RSQ=0.8096;VT=SNP;AA=A;LDAF=0.0101;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=19;AVGPOST=0.9949;THETA=0.0003;AF=0.01;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.9,-5 0|0:0:-0,-2.05,-5 0|0:0.05:-0.01,-1.75,-5 0|0:0.15:-0.04,-1.1,-5 22 50534909 rs4838823 T G 100 PASS ERATE=0.0004;RSQ=0.9966;AA=T;AN=2184;AVGPOST=0.9981;VT=SNP;THETA=0.0006;AC=530;SNPSOURCE=LOWCOV;LDAF=0.243;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.12;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.13,-5 1|1:2:-5,-2.17,-0 0|0:0:-0,-3.44,-5 0|0:0:-0,-2.61,-5 0|0:0:-0.04,-1.09,-5 22 50534952 rs9628282 G T 100 PASS AA=G;AN=2184;AC=380;THETA=0.0005;VT=SNP;AVGPOST=0.9993;RSQ=0.9978;LDAF=0.1738;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.17;ASN_AF=0.0035;AMR_AF=0.19;AFR_AF=0.17;EUR_AF=0.3 GT:DS:GL 1|1:2:-5,-1.41,-0.02 0|0:0:-0,-3.05,-5 0|0:0:-0,-3.55,-5 1|0:1:-5,-0,-4.7 0|0:0:-0,-2.08,-5 22 50535007 rs138487187 T C 100 PASS THETA=0.0004;AA=T;AN=2184;AC=6;VT=SNP;AVGPOST=0.9998;RSQ=0.9692;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0,-2.09,-5 0|0:0:-0,-2.68,-5 22 50535156 rs182145287 C G 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.35,-5 22 50535223 rs78500700 T A 100 PASS LDAF=0.0137;AC=28;AA=T;AN=2184;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;RSQ=0.9118;THETA=0.002;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 1|0:1:-5,-0,-2.93 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-4.7,-5 22 50535316 rs4838824 A G 100 PASS ERATE=0.0005;AVGPOST=0.9986;LDAF=0.2416;AA=G;AN=2184;AC=528;VT=SNP;RSQ=0.997;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.39,-5 1|1:2:-5,-2.31,-0 0|0:0:-0,-2.09,-5 0|0:0:-0,-2.95,-5 0|0:0:-0,-2.04,-5 22 50535434 rs111778321 T C 100 PASS RSQ=0.9892;THETA=0.0002;AA=T;AN=2184;LDAF=0.0385;AC=84;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.04;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0,-3.42,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-3.14,-5 22 50535780 rs185134861 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9996;LDAF=0.0015;VT=SNP;RSQ=0.8735;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.66,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.04,-1.09,-5 22 50535789 rs190775505 C G 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.6242;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.91,-0.06,-3.36 0|0:0:-0.07,-0.86,-5 22 50535927 rs4838800 T C 100 PASS RSQ=0.9982;AA=T;AN=2184;VT=SNP;AC=526;THETA=0.0006;LDAF=0.2408;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.09,-5 1|1:2:-5,-2.44,-0 0|0:0:-0.02,-1.41,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.48,-0.48,-0.48 22 50536032 rs141501351 T C 100 PASS AVGPOST=0.9986;LDAF=0.0033;THETA=0.0004;RSQ=0.8203;AA=T;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-2.38,-5 22 50536061 rs73185329 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AC=380;RSQ=0.9954;VT=SNP;THETA=0.0006;LDAF=0.1731;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.17;ASN_AF=0.0035;AMR_AF=0.19;AFR_AF=0.17;EUR_AF=0.3 GT:DS:GL 1|1:2:-5,-2.52,-0 0|0:0:-0,-3.11,-5 0|0:0:-0,-2.83,-5 1|0:1:-1.33,-0.02,-5 0|0:0:-0.01,-1.56,-5 22 50536128 rs146191501 T G 100 PASS LDAF=0.0071;AA=T;AN=2184;AC=16;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9506;THETA=0.0003;AVGPOST=0.9992;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.34,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-3.42,-5 22 50536131 rs78960991 G A 100 PASS ERATE=0.0004;RSQ=0.9672;LDAF=0.0066;AA=G;AN=2184;VT=SNP;AC=14;SNPSOURCE=LOWCOV;AVGPOST=0.9995;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-3.42,-5 22 50536248 rs183239517 G A 100 PASS AVGPOST=0.9986;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=9;RSQ=0.8858;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0045;AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.12,-0.6,-3.8 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.86,-5 22 50536252 rs9617022 C A 100 PASS ERATE=0.0005;RSQ=0.9969;AN=2184;AC=528;VT=SNP;AA=A;LDAF=0.2419;SNPSOURCE=LOWCOV;AVGPOST=0.9987;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.8,-5 1|1:2:-4.7,-0.7,-0.1 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.12,-5 22 50536348 rs188490947 C T 100 PASS ERATE=0.0005;AVGPOST=0.9985;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.5092;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0012;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0.08,-0.76,-5 0|0:0:-0,-3.15,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.04,-1.07,-5 22 50536387 rs139182895 C T 100 PASS AA=C;THETA=0.0002;RSQ=0.8879;LDAF=0.0016;AN=2184;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.82,-4.7 0|0:0:-0.08,-0.78,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.07,-0.85,-5 22 50536546 rs4838825 A G 100 PASS ERATE=0.0004;LDAF=0.2425;RSQ=0.9963;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;THETA=0.0006;AC=530;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.34,-5 1|1:2:-2.67,-0.37,-0.24 0|0:0:-0.02,-1.34,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.12,-0.6,-3.7 22 50536643 rs68181572 TTAAG T 468 PASS THETA=0.0035;AVGPOST=0.8934;LDAF=0.1889;AN=2184;VT=INDEL;ERATE=0.0437;RSQ=0.6925;AC=340;AF=0.16;ASN_AF=0.13;AMR_AF=0.14;AFR_AF=0.27;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-1.8,-49.3 0|0:0.05:0,0,0 1|0:0.9:0,0,0 0|0:0:0,-1.5,-38.5 0|0:0.05:0,0,0 22 50536691 . TTAA T 350 PASS ERATE=0.0005;THETA=0.0004;AN=2184;VT=INDEL;AVGPOST=0.9969;LDAF=0.0065;AC=11;RSQ=0.8011;AF=0.01;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-1.5,-33.5 0|0:0:0,-0.3,-6.5 0|0:0:0,0,0 0|0:0:0,-1.2,-26.4 0|0:0:0,0,0 22 50536700 . A ACT 556 PASS ERATE=0.0005;AN=2184;LDAF=0.5971;VT=INDEL;THETA=0.0005;AC=1304;AVGPOST=0.9915;RSQ=0.9872;AF=0.6;ASN_AF=0.57;AMR_AF=0.74;AFR_AF=0.32;EUR_AF=0.72 GT:DS:GL 1|1:2:-12,-1.5,0 1|1:2:-3,-0.3,0 1|0:1.05:0,0,0 1|0:1:-2,0,-8.3 0|0:0:0,-0.3,-4.6 22 50536701 rs10627093 C CTT 1250 PASS RSQ=0.9759;AVGPOST=0.9839;AN=2184;LDAF=0.5971;AC=1307;VT=INDEL;ERATE=0.0024;THETA=0.0003;AF=0.6;ASN_AF=0.57;AMR_AF=0.75;AFR_AF=0.33;EUR_AF=0.72 GT:DS:GL 1|1:2:-30.5,-1.5,0 1|1:2:-6.1,-0.3,0 1|0:1.05:-6,-0.3,0 1|0:1:-5.2,0,-8.9 0|0:0:0,-0.3,-4.9 22 50536766 rs4838826 T C 100 PASS AVGPOST=0.9936;LDAF=0.5972;AA=C;AN=2184;VT=SNP;AC=1304;THETA=0.0006;RSQ=0.9904;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.6;ASN_AF=0.57;AMR_AF=0.74;AFR_AF=0.32;EUR_AF=0.72 GT:DS:GL 1|1:2:-5,-2.53,-0 1|1:2:-5,-0.29,-0.32 1|0:1:-5,-0,-4.22 1|0:1:-0.05,-0.94,-5 0|0:0:-0,-3.7,-5 22 50536861 rs78755004 G T 100 PASS AC=7;ERATE=0.0005;LDAF=0.0036;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.8806;SNPSOURCE=LOWCOV;THETA=0.002;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0,-3.4,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.25,-5 22 50536879 rs139546346 C T 100 PASS THETA=0.0021;LDAF=0.0009;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6046;AVGPOST=0.9992;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0,-2.01,-5 0|0:0.05:-1.18,-0.03,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-3.09,-5 22 50536927 rs149722336 T C 100 PASS AC=47;RSQ=0.9931;AA=T;AN=2184;LDAF=0.0216;AVGPOST=0.9997;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0.19,-0.46,-2.34 0|0:0:-0.01,-1.77,-5 22 50536990 rs62241085 G A 100 PASS LDAF=0.2366;AA=G;AN=2184;AC=518;ERATE=0.0009;AVGPOST=0.9947;VT=SNP;RSQ=0.9891;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 1|1:1.95:-5,-1.87,-0.01 0|0:0:-0,-2.58,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.07,-0.82,-5 22 50536995 rs147423260 C A 100 PASS AA=C;AN=2184;AC=6;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.9763;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.57,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.11,-0.64,-4 22 50537003 rs192878967 T C 100 PASS AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5036;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.35,-5 0|0:0:-0,-2.92,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.04,-1.09,-5 22 50537078 rs139795262 A G 100 PASS THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7819;AA=A;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0,-3.38,-5 0|0:0:-0,-3.12,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.62,-5 22 50537158 rs145339994 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.685;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.33,-5 22 50537200 rs183791127 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;RSQ=0.8654;THETA=0.0007;AVGPOST=0.9992;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-3.21,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.01,-1.57,-5 22 50537235 rs34534011 A T 100 PASS AVGPOST=0.9985;AC=525;THETA=0.0002;AA=T;AN=2184;VT=SNP;RSQ=0.9965;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.2402;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.79,-5 1|1:2:-5,-3.44,-0 0|0:0:-0.01,-1.84,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-2.58,-5 22 50537302 rs187930409 A G 100 PASS 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ERATE=0.0004;AC=525;AVGPOST=0.9994;THETA=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.2406;SNPSOURCE=LOWCOV;RSQ=0.9985;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-2.82,-0.44,-0.2 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-3.85,-5 22 50537712 rs151276464 G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.0064;AC=14;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.9932;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-3.66,-5 0|0:0:-0,-3.32,-5 22 50537746 rs75791883 C T 100 PASS AVGPOST=1;AA=C;AN=2184;AC=16;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;LDAF=0.0073;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-2.43,-5 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 22 50537747 rs188300304 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.74,-5 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A G 100 PASS AVGPOST=1;AN=2184;THETA=0.0008;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50537901 rs12169319 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9987;LDAF=0.053;VT=SNP;AC=116;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.05;ASN_AF=0.0017;AMR_AF=0.04;AFR_AF=0.13;EUR_AF=0.05 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50537916 . T C 100 PASS AVGPOST=1;AA=T;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50537948 rs185518372 T G 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;THETA=0.0006;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50537957 . G C 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50537961 rs190821816 G C 100 PASS AVGPOST=1;LDAF=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.95;THETA=0.0008;VT=SNP;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50537980 rs140532446 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0023;RSQ=1;AC=4;ERATE=0.0003;THETA=0.0003;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50538028 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50538053 . C G 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50538174 rs9617023 G A 100 PASS ERATE=0.0004;THETA=0.0004;RSQ=0.9959;AA=G;AN=2184;AC=518;VT=SNP;LDAF=0.2378;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-4.7,-5 1|1:2:-5,-0.98,-0.05 0|0:0:-0,-2.35,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-3.19,-5 22 50538191 rs113446472 A G 100 PASS ERATE=0.0004;RSQ=0.9902;AN=2184;VT=SNP;AA=A;LDAF=0.0716;AC=156;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9982;AF=0.07;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-4,-5 1|0:1:-1.55,-0.01,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.53,-5 22 50538244 rs4838827 T G 100 PASS AA=G;AN=2184;AVGPOST=0.9997;RSQ=0.9993;LDAF=0.2399;VT=SNP;AC=524;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.99,-5 1|1:2:-5,-2.18,-0 0|0:0:-0,-2.62,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.85,-5 22 50538265 rs4838828 A T 100 PASS RSQ=0.9992;THETA=0.0002;AA=T;AN=2184;AVGPOST=0.9997;LDAF=0.2399;VT=SNP;AC=524;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-3.18,-5 1|1:2:-5,-3.11,-0 0|0:0:-0,-4.4,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-4.1,-5 22 50538271 rs116408971 A G 100 PASS LDAF=0.0041;THETA=0.0002;AN=2184;VT=SNP;AA=A;AC=9;RSQ=0.9894;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.9,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-4.7,-5 22 50538324 rs181646472 T G 100 PASS AVGPOST=0.9994;AA=T;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.6553;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 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PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.9977;AVGPOST=0.999;VT=SNP;AC=526;LDAF=0.2412;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.04,-5 1|1:2:-5,-3.8,-0 0|0:0:-0,-3.1,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.01,-1.83,-5 22 50543928 rs148379914 C T 100 PASS AVGPOST=0.9986;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.5309;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-2.53,-5 0|0:0:-0.07,-0.8,-5 0|0:0:-0,-2.16,-5 22 50543976 rs140671917 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7844;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.08,-0.77,-5 22 50543990 rs185717143 A G 100 PASS AVGPOST=0.9986;AN=2184;RSQ=0.7342;VT=SNP;AA=A;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;THETA=0.0003;AF=0.0018;AMR_AF=0.01 GT:DS:GL 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AA=C;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0036;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.85,-5 0|0:0:-0,-2.31,-5 0|0:0:-0.28,-0.39,-1.19 0|0:0:-0.01,-1.59,-5 22 50546023 rs143597850 C T 100 PASS AA=C;AN=2184;LDAF=0.004;AC=8;RSQ=0.9123;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0037;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.08,-0.8,-4.1 0|0:0:-0.03,-1.23,-5 0|0:0:-0.02,-1.34,-5 22 50546028 rs185783527 C G 100 PASS AA=C;THETA=0.0004;AN=2184;RSQ=0.5172;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.53,-5 0|0:0.05:-0.04,-1.03,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.01,-1.58,-5 22 50546049 rs150147741 A C 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;RSQ=0.7679;LDAF=0.0018;VT=SNP;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 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50546098 rs74765157 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9975;THETA=0.0005;VT=SNP;AC=215;LDAF=0.0992;SNPSOURCE=LOWCOV;RSQ=0.9888;AF=0.1;ASN_AF=0.12;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.61,-5 1|0:1:-1.8,-0.01,-4 0|0:0:-0.03,-1.22,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.18,-0.46,-3.03 22 50546185 rs9617073 T G 100 PASS LDAF=0.2401;AA=G;AN=2184;VT=SNP;AC=524;AVGPOST=0.998;RSQ=0.9952;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.62,-5 1|1:2:-5,-1.26,-0.02 0|0:0:-0.07,-0.83,-5 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.03,-1.13,-5 22 50546191 rs144677184 G A 100 PASS LDAF=0.0021;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.8764;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.12,-0.62,-3.15 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.02,-1.38,-5 22 50546255 rs139466253 C T 100 PASS LDAF=0.0009;AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.6072;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9992;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.11,-0.66,-4.1 0|0:0:-0.02,-1.37,-5 22 50546264 rs9617074 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;LDAF=0.2414;VT=SNP;AVGPOST=0.9976;AC=527;SNPSOURCE=LOWCOV;RSQ=0.9951;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.7,-5 1|1:2:-5,-2.39,-0 0|0:0:-0,-1.99,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.03,-1.16,-5 22 50546430 rs142775706 C T 100 PASS AA=C;LDAF=0.0071;AN=2184;RSQ=0.9715;VT=SNP;AC=15;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.28,-5 0|0:0:-0,-3.55,-5 22 50546467 rs6010173 G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;AC=57;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;LDAF=0.0261;ERATE=0.0003;AF=0.03;ASN_AF=0.04;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 22 50546485 rs117054355 G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=22;LDAF=0.0101;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50546544 . C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50546612 . C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9976;LDAF=0.0029;ERATE=0.0011;SNPSOURCE=EXOME;AC=5;THETA=0.0003;RSQ=0.6817;AF=0.0023;ASN_AF=0.0017;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.31,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50546622 rs140089744 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8963;LDAF=0.001;VT=SNP;AVGPOST=0.9998;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50546666 rs3810971 C T 100 PASS AC=525;LDAF=0.2404;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0001;VT=SNP;RSQ=0.9995;AVGPOST=0.9998;ERATE=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50546688 . G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;RSQ=0.8031;LDAF=0.0007;SNPSOURCE=EXOME;ERATE=0.0003;AVGPOST=0.9995;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50546725 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.31,-0.3,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-3.66,-5 22 50546788 rs138215 G C 100 PASS AA=G;AN=2184;LDAF=0.1527;VT=SNP;AVGPOST=0.9989;THETA=0.0012;RSQ=0.9978;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=335;AF=0.15;ASN_AF=0.0035;AMR_AF=0.17;AFR_AF=0.09;EUR_AF=0.3 GT:DS:GL 1|1:2:-5,-5,0 0|0:0:-0,-3.7,-5 0|0:0:-0,-3.59,-5 1|0:1:-5,0,-5 0|0:0:-0,-3.4,-5 22 50546797 rs138216 T C 100 PASS ERATE=0.0004;AC=319;AA=T;AN=2184;THETA=0.0005;LDAF=0.1457;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9997;AVGPOST=0.9999;AF=0.15;ASN_AF=0.0035;AMR_AF=0.17;AFR_AF=0.06;EUR_AF=0.3 GT:DS:GL 1|1:2:-5,-4.7,-0 0|0:0:-0,-2.71,-5 0|0:0:-0,-2.66,-5 1|0:1:-5,0,-5 0|0:0:-0,-3.66,-5 22 50546832 rs182343320 C T 100 PASS ERATE=0.0004;RSQ=0.9049;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.47,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.1,-0.71,-4.7 0|0:0:0,-5,-5 22 50546840 rs187650127 C T 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.44,-5 0|0:0:-0.01,-1.92,-5 0|0:0:-0.07,-0.84,-5 0|0:0:0,-5,-5 22 50546844 rs3810972 T A 100 PASS AC=525;AN=2184;LDAF=0.2403;VT=SNP;AA=A;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-3.06,-0 0|0:0:-0,-2.67,-5 0|0:0:-0.06,-0.88,-5 0|0:0:0,-5,-5 22 50546868 rs3810973 G T 100 PASS AVGPOST=1;AC=525;LDAF=0.2404;RSQ=0.9999;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-3.74,-0 0|0:0:-0,-2.83,-5 0|0:0:-0,-2.46,-5 0|0:0:0,-5,-5 22 50546900 rs3810974 C T 100 PASS AVGPOST=1;AC=525;LDAF=0.2404;AA=C;RSQ=0.9999;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-3.14,-0 0|0:0:-0,-3.34,-5 0|0:0:-0,-2.94,-5 0|0:0:0,-5,-5 22 50546924 rs143779989 A G 100 PASS AVGPOST=1;THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=1;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-3.05,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50546961 rs112945019 G A 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;LDAF=0.0101;RSQ=1;SNPSOURCE=LOWCOV;AC=21;ERATE=0.0003;THETA=0.0003;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.19,-5 0|0:0:-0,-2.47,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50546968 rs151310306 C T 100 PASS AVGPOST=1;LDAF=0.0009;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;RSQ=0.9756;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.24,-5 0|0:0:-0,-2.89,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50546971 rs3810975 A G 100 PASS AC=525;LDAF=0.2404;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9998;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AVGPOST=0.9999;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-2.59,-0 0|0:0:-0.26,-0.35,-5 0|0:0:-0,-2.57,-5 0|0:0:0,-5,-5 22 50547016 rs139407169 C T 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50547017 rs111648284 G A 100 PASS AVGPOST=1;AA=g;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50547031 rs117447913 C T 100 PASS AC=47;AN=2184;RSQ=0.9939;AVGPOST=0.9996;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0217;THETA=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50547082 rs75432260 C T 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=c;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50547101 rs182796919 C T 100 PASS ERATE=0.0004;AVGPOST=1;LDAF=0.0009;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=c;AC=2;RSQ=0.9756;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50547125 . G C 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;THETA=0.0018;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50547247 rs138217 A G 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.996;VT=SNP;LDAF=0.9945;AC=2172;AA=a;ERATE=0.0003;THETA=0.0003;AF=0.99;ASN_AF=1;AMR_AF=1;AFR_AF=1;EUR_AF=0.99 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-5,0 1|1:2:-5,-5,0 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50547358 rs187395088 G A 100 PASS ERATE=0.0004;RSQ=0.9655;AA=g;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9999;THETA=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.11,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50547389 rs4838801 C T 100 PASS AN=2184;RSQ=0.9993;VT=SNP;AA=c;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=308;ERATE=0.0003;LDAF=0.1409;THETA=0.0003;AF=0.14;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 0|1:1:-0.22,-0.4,-5 0|0:0:-0,-2.13,-5 0|0:0:-0,-3.08,-5 0|0:0:0,-5,-5 22 50547515 rs192568346 G C 100 PASS AA=g;THETA=0.0004;RSQ=0.7051;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.34,-5 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.18,-0.48,-2.15 0|0:0:-0.11,-0.65,-4 0|0:0:-0.12,-0.61,-5 22 50547529 rs4838837 C T 100 PASS AC=525;AN=2184;RSQ=0.9953;AVGPOST=0.9979;THETA=0.0005;VT=SNP;AA=c;LDAF=0.2406;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-3.22,-5 1|1:2:-5,-0.6,-0.12 0|0:0:-0.05,-0.99,-5 0|0:0:-0.12,-0.63,-3.92 0|0:0:-0.13,-0.59,-4.7 22 50547536 rs184852512 G A 100 PASS LDAF=0.0013;THETA=0.0002;AA=g;AN=2184;RSQ=0.7404;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.34,-5 0|0:0:-0.08,-0.79,-4.7 0|0:0:-0.04,-1.1,-5 0|0:0:-0.2,-0.44,-2.12 0|0:0:-0.13,-0.59,-4.7 22 50547558 rs138218 T C 100 PASS 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AC=520;RSQ=0.9886;AN=2184;VT=SNP;AA=c;AVGPOST=0.9948;LDAF=0.2377;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.22 GT:DS:GL 0|0:0:-0.05,-0.93,-5 1|1:2:-1.95,-0.12,-0.64 0|0:0:-0.21,-0.43,-1.93 0|0:0:-0.04,-1.02,-5 0|0:0:-0.04,-1.05,-5 22 50547869 rs192646869 C T 100 PASS THETA=0.0004;AN=2184;LDAF=0.0018;VT=SNP;AA=c;RSQ=0.3309;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.21,-0.43,-1.79 0|0:0:-0.13,-0.58,-2.81 0|0:0:-0.04,-1.04,-5 0|0:0:-0.03,-1.25,-5 22 50547870 rs183917478 G A 100 PASS ERATE=0.0004;RSQ=0.7001;AA=g;AN=2184;AC=8;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0051;THETA=0.0003;AVGPOST=0.9965;AF=0.0037;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.2,-0.45,-1.98 0|0:0:-0.13,-0.59,-2.97 0|0:0:-0.03,-1.12,-5 0|0:0:-0.02,-1.31,-5 22 50547880 rs189329446 T C 100 PASS ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.6178;AC=2;AA=t;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0.08,-0.75,-4.4 0|0:0:-0.13,-0.6,-3 0|0:0:-0.07,-0.82,-5 0|0:0:-0.02,-1.35,-5 22 50547895 rs181982786 G A 100 PASS RSQ=0.5809;AA=g;THETA=0.0004;LDAF=0.0066;AN=2184;ERATE=0.0009;AVGPOST=0.9934;VT=SNP;AC=10;SNPSOURCE=LOWCOV;AF=0.0046;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.08,-0.76,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.16,-0.52,-2.16 0|0:0:-0.2,-0.44,-2.09 0|0:0:-0.11,-0.65,-4.7 22 50547921 rs34937757 AC A 231 PASS AC=520;AN=2184;VT=INDEL;THETA=0.0005;ERATE=0.0017;RSQ=0.9618;LDAF=0.2406;AVGPOST=0.9816;AF=0.24;ASN_AF=0.3;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-1.2,-16.8 1|1:1.85:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50547985 rs9617075 G A 100 PASS THETA=0.0002;LDAF=0.2381;AN=2184;VT=SNP;AC=521;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0015;AVGPOST=0.9881;RSQ=0.9741;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.22 GT:DS:GL 0|0:0:-0.02,-1.37,-5 1|1:1.95:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.44,-1.97 0|0:0:-0.02,-1.39,-5 0|0:0:-0.2,-0.45,-2.09 22 50547989 rs143127267 G A 100 PASS AC=17;AVGPOST=0.9957;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0089;ERATE=0.0006;RSQ=0.8124;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0:-0.21,-0.44,-1.99 0|0:0:-0.22,-0.42,-1.8 0|0:0:-0.01,-1.47,-5 0|0:0:-0.2,-0.45,-2.04 22 50548056 rs185904676 C T 100 PASS AA=C;AN=2184;ERATE=0.0009;THETA=0.0005;VT=SNP;LDAF=0.0072;RSQ=0.4565;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9885;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.16,-0.52,-3.28 0|0:0.2:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 22 50548214 rs11703494 C T 100 PASS LDAF=0.2425;THETA=0.0004;AA=T;AN=2184;VT=SNP;ERATE=0.001;AVGPOST=0.9923;RSQ=0.9842;AC=527;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.57,-5 1|1:2:-2.38,-0.4,-0.22 0|0:0:-0.07,-0.81,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.02,-1.37,-5 22 50548225 rs148259063 C T 100 PASS ERATE=0.0004;LDAF=0.0095;AA=C;AN=2184;RSQ=0.7755;AC=16;AVGPOST=0.9942;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;ASN_AF=0.03 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0.31,-0.43,-0.85 0|0:0:-0.09,-0.74,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.01,-1.81,-5 22 50548270 . T TA 260 PASS AVGPOST=0.977;AC=228;THETA=0.0002;AN=2184;VT=INDEL;ERATE=0.0017;LDAF=0.105;RSQ=0.9106;AF=0.1;ASN_AF=0.13;AMR_AF=0.19;AFR_AF=0.03;EUR_AF=0.1 GT:DS:GL 0|0:0:0,-1.2,-12.2 1|0:1:0,-0.1,-0.2 0|0:0:0,-0.9,-9.2 0|0:0:0,-1.2,-12.2 0|0:0:0,0,0 22 50548277 rs13055849 T A 100 PASS RSQ=0.9813;THETA=0.0002;AN=2184;AVGPOST=0.9914;AC=523;VT=SNP;ERATE=0.001;AA=A;LDAF=0.2378;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.07,-0.86,-5 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.24,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.18,-0.47,-3.07 22 50548317 rs13058355 C A 100 PASS AC=525;LDAF=0.2404;AA=C;THETA=0.0004;AN=2184;VT=SNP;ERATE=0.0008;RSQ=0.9867;SNPSOURCE=LOWCOV;AVGPOST=0.9941;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.87,-5 1|1:2:-2.91,-0.48,-0.18 0|0:0:-0.13,-0.59,-3.59 0|0:0:-0.02,-1.35,-5 0|0:0:-0.08,-0.79,-5 22 50548332 rs190268257 C T 100 PASS 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ERATE=0.0005;AVGPOST=0.9963;AA=C;AN=2184;AC=26;THETA=0.0008;LDAF=0.0125;VT=SNP;RSQ=0.8927;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.05;EUR_AF=0.0026 GT:DS:GL 0|0:0.1:-0.02,-1.45,-5 0|0:0:-0.71,-0.09,-3.8 0|0:0:-0.11,-0.64,-2.43 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-4 22 50548607 rs142736877 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;AC=13;AVGPOST=0.9981;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.007;RSQ=0.9034;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.12,-0.63,-2.34 0|0:0.5:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.85 22 50548626 rs11704713 A C 100 PASS ERATE=0.014;AA=C;THETA=0.0002;AN=2184;RSQ=0.8469;LDAF=0.201;AVGPOST=0.9335;VT=SNP;AC=429;SNPSOURCE=LOWCOV;AF=0.2;ASN_AF=0.26;AMR_AF=0.29;AFR_AF=0.1;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0.4:-0.08,-0.76,-3.17 0|0:0.05:-0.2,-0.48,-1.38 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.08,-5 22 50548652 rs186514612 G A 100 PASS 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LDAF=0.2045;AA=G;AN=2184;VT=SNP;AC=456;RSQ=0.9183;SNPSOURCE=LOWCOV;AVGPOST=0.9605;ERATE=0.0007;THETA=0.0003;AF=0.21;ASN_AF=0.26;AMR_AF=0.31;AFR_AF=0.1;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.12,-0.63,-4.1 1|1:1.9:-0.48,-0.48,-0.48 0|0:0:-0.23,-0.41,-1.65 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.48,-0.48,-0.48 22 50548773 rs11704211 G T 100 PASS AC=472;THETA=0.0004;AVGPOST=0.9676;AA=G;AN=2184;RSQ=0.9322;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;LDAF=0.2109;AF=0.22;ASN_AF=0.25;AMR_AF=0.32;AFR_AF=0.11;EUR_AF=0.21 GT:DS:GL 0|0:0:-0.02,-1.42,-5 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.2,-0.44,-2.71 22 50548849 rs11704231 G A 100 PASS AC=525;ERATE=0.0013;LDAF=0.2404;THETA=0.0002;AA=G;AN=2184;VT=SNP;RSQ=0.988;AVGPOST=0.9948;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.02,-1.45,-5 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.09,-0.73,-4.7 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.14,-0.57,-3.52 22 50548952 rs11704255 G C 100 PASS 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AVGPOST=1;AA=G;AN=2184;AC=49;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.999;THETA=0.0003;LDAF=0.0224;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-3.36,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552012 rs77297773 C T 100 PASS AA=C;AN=2184;AC=6;THETA=0.0005;VT=SNP;AVGPOST=0.9998;LDAF=0.0028;SNPSOURCE=LOWCOV;RSQ=0.97;ERATE=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.93,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552022 rs190566802 C T 100 PASS LDAF=0.0009;AA=C;RSQ=0.9328;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AVGPOST=0.9999;THETA=0.0003;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552053 . G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552119 . G T 100 PASS ERATE=0.0005;THETA=0.0002;AA=g;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552269 rs181708584 A G 100 PASS AVGPOST=1;LDAF=0.0004;AN=2184;RSQ=0.95;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552278 rs4838839 C T 100 PASS AVGPOST=1;AC=525;LDAF=0.2404;AA=T;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552349 rs5771075 T C 100 PASS AN=2184;LDAF=0.1468;VT=SNP;AC=320;ERATE=0.003;RSQ=0.9611;AVGPOST=0.9879;SNPSOURCE=LOWCOV;AA=t;THETA=0.0003;AF=0.15;ASN_AF=0.19;AMR_AF=0.16;AFR_AF=0.05;EUR_AF=0.17 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0.29,-0.43,-0.95 1|0:1:-2.94,-0.48,-0.18 0|0:0:-0,-2.74,-5 0|0:0:0,-5,-5 22 50552383 rs186906439 C T 100 PASS ERATE=0.0005;THETA=0.0002;AA=T;AN=2184;AC=13;VT=SNP;RSQ=0.8506;AVGPOST=0.997;SNPSOURCE=LOWCOV;LDAF=0.0073;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.94,-5 0|0:0.15:-0.04,-1.01,-5 0|0:0:-0.21,-0.43,-1.94 0|0:0:-0.07,-0.83,-5 0|0:0.05:-0.01,-1.54,-5 22 50552410 rs12167546 C T 100 PASS AC=88;ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;RSQ=0.9644;VT=SNP;LDAF=0.042;AVGPOST=0.9959;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.14;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.12,-0.61,-3.8 0|0:0:-0.21,-0.43,-1.94 0|0:0:-0.2,-0.44,-2.07 0|0:0:-0.03,-1.23,-5 22 50552432 rs151162572 C T 100 PASS AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9979;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9524;ERATE=0.0006;AC=42;LDAF=0.0198;AF=0.02;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.12 0|1:0.7:-0.02,-1.28,-5 22 50552440 rs189744234 C T 100 PASS AVGPOST=0.9921;AA=C;LDAF=0.0112;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.7164;SNPSOURCE=LOWCOV;AC=19;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.21,-0.43,-2.04 0|0:0:-0.07,-0.82,-5 22 50552537 rs181222411 C T 100 PASS RSQ=0.6191;AA=C;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9971;LDAF=0.0029;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.0017;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.64,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0,-2.12,-5 22 50552571 rs184926464 G T 100 PASS ERATE=0.0057;AA=g;AN=2184;LDAF=0.0173;RSQ=0.6886;VT=SNP;SNPSOURCE=LOWCOV;AC=27;AVGPOST=0.9866;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.41,-5 0|0:0:-0.16,-0.52,-2.64 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.03,-1.14,-5 0|0:0:-0.26,-0.35,-5 22 50552626 rs140226852 G A 100 PASS AA=G;AN=2184;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AVGPOST=0.9999;THETA=0.0003;RSQ=0.9693;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.19,-5 0|0:0:-0.09,-0.73,-3.8 0|0:0:-0,-2.14,-5 0|0:0:-0,-2.4,-5 0|0:0:-0,-3.3,-5 22 50552706 rs189688747 A T 100 PASS AVGPOST=1;THETA=0.0002;AN=2184;VT=SNP;AA=A;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552736 rs4240525 T C 100 PASS AC=525;AA=C;THETA=0.0002;AN=2184;RSQ=0.9993;VT=SNP;LDAF=0.2406;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-2.77,-0 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50552952 . T C 100 PASS AVGPOST=1;THETA=0.0002;AA=T;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553013 rs149927638 C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0006;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553033 . A G 100 PASS AVGPOST=1;THETA=0.0002;AN=2184;VT=SNP;LDAF=0;AA=A;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553066 . G A 100 PASS RSQ=0.8284;AA=G;AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553085 rs73431376 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0046;VT=SNP;AC=10;RSQ=1;ERATE=0.0003;THETA=0.0003;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553086 . G A 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553142 rs187286196 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7831;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0,-2.75,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553148 rs9617079 C T 100 PASS AA=C;THETA=0.0002;AN=2184;LDAF=0.2409;VT=SNP;AC=526;RSQ=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-1.61,-0.01 0|0:0:-0,-3.01,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553214 rs146499597 G T 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.9058;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.07,-0.83,-4.22 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.51,-5 22 50553276 rs116572017 C G 100 PASS AA=C;AN=2184;VT=SNP;LDAF=0.018;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9874;AVGPOST=0.9995;AC=39;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.84,-5 22 50553364 rs192073788 A G 100 PASS AC=7;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.0034;AA=A;ERATE=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9995;RSQ=0.9314;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-3.62,-5 0|0:0:0,-5,-5 22 50553404 rs141008224 A G 100 PASS RSQ=0.8154;AN=2184;THETA=0.0005;VT=SNP;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-3.47,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553486 rs183535559 A G 100 PASS THETA=0.0002;AVGPOST=0.9994;AN=2184;VT=SNP;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6964;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.52,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553514 rs742183 A T 100 PASS AVGPOST=1;AC=525;LDAF=0.2404;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=1;ERATE=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553610 . G C 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553643 . A C 100 PASS RSQ=0.9181;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553645 . A G 100 PASS AVGPOST=1;THETA=0.0002;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553662 . A G 100 PASS AVGPOST=1;THETA=0.0004;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553702 rs188458178 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=0.9941;ERATE=0.0003;AF=0.0037;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553703 rs190058977 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553733 rs59000831 G T 100 PASS RSQ=0.9813;THETA=0.0002;AA=G;AN=2184;VT=SNP;ERATE=0.0008;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9999;AF=0.0023;ASN_AF=0.01;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50553764 rs182709817 C A 100 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GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0.21,-0.43,-1.95 0|0:0:-0.04,-1.01,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0,-3.32,-5 22 50555379 rs146455538 C T 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.552;ERATE=0.0003;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0,-2.28,-5 0|0:0:-0,-4.4,-5 22 50555396 rs115254214 A T 100 PASS THETA=0.0004;AN=2184;AC=6;VT=SNP;LDAF=0.0026;AA=A;RSQ=0.9156;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0,-2.54,-5 0|0:0:0,-5,-5 22 50555404 rs139899513 C T 100 PASS AA=C;AN=2184;LDAF=0.001;VT=SNP;THETA=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-2.55,-5 0|0:0:-0,-3.38,-5 0|0:0:0,-5,-5 22 50555486 rs126241 G C 100 PASS 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AACTCTGTC A 616 PASS ERATE=0.0004;AC=122;AN=2184;VT=INDEL;RSQ=0.9824;AVGPOST=0.9973;LDAF=0.056;THETA=0.0003;AF=0.06;AMR_AF=0.03;AFR_AF=0.23 GT:DS:GL 0|0:0:0,-1.2,-53.2 0|0:0:0,0,0 0|0:0:0,-0.3,-13.3 0|0:0:0,-0.3,-13.3 0|0:0:0,0,0 22 50555619 rs138222 C T 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=2002;LDAF=0.9163;VT=SNP;AVGPOST=0.9991;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AF=0.92;ASN_AF=0.91;AMR_AF=0.93;AFR_AF=0.94;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-2.18,-0 1|1:2:-5,-1.88,-0.01 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50555635 rs882753 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.1412;RSQ=1;AC=309;ERATE=0.0003;AF=0.14;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-5,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555644 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555686 rs760749 A C 100 PASS AC=342;ERATE=0.0005;LDAF=0.1567;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;RSQ=0.9991;THETA=0.0003;AF=0.16;ASN_AF=0.22;AMR_AF=0.17;AFR_AF=0.02;EUR_AF=0.19 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555694 . G C 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555696 . G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555697 . C A 100 PASS THETA=0.0023;RSQ=0.7608;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555704 rs151215930 T C 100 PASS AVGPOST=1;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555746 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555777 rs140411507 A G 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555825 rs4838804 T A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=151;VT=SNP;ERATE=0.0003;RSQ=0.9975;AVGPOST=0.9995;LDAF=0.0689;AF=0.07;ASN_AF=0.01;AMR_AF=0.09;AFR_AF=0.02;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-5,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50555845 rs150400029 G A 100 PASS AVGPOST=1;THETA=0.0002;AA=g;AN=2184;RSQ=0.9906;VT=SNP;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 22 50555870 rs145219953 C T 100 PASS AA=C;AN=2184;LDAF=0.0046;THETA=0.0008;VT=SNP;AC=10;RSQ=0.9904;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0046;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.81,-5 0|0:0:-0,-3.22,-5 0|0:0:0,-5,-5 22 50555983 rs3810976 G A 100 PASS LDAF=0.0024;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.946;THETA=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-2.76,-5 22 50556001 rs3810977 C T 100 PASS AA=C;AN=2184;AC=133;AVGPOST=0.999;LDAF=0.0611;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;RSQ=0.9933;ERATE=0.0003;AF=0.06;ASN_AF=0.18;AMR_AF=0.07;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.76,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.45,-5 22 50556119 rs149139264 C T 100 PASS AA=C;AN=2184;RSQ=0.9389;AVGPOST=0.9979;THETA=0.0001;VT=SNP;SNPSOURCE=LOWCOV;AC=27;ERATE=0.0003;LDAF=0.0129;AF=0.01;ASN_AF=0.04;AFR_AF=0.0041 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50556262 rs875845 T C 100 PASS AA=T;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.9897;SNPSOURCE=LOWCOV;LDAF=0.0416;ERATE=0.0003;AC=91;THETA=0.0003;AF=0.04;ASN_AF=0.12;AMR_AF=0.05;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-3.09,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.06,-5 0|0:0:-0.01,-1.59,-5 22 50556331 rs138223 C T 100 PASS AC=285;AA=C;AN=2184;LDAF=0.1303;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9974;THETA=0.0003;AVGPOST=0.9992;AF=0.13;ASN_AF=0.0035;AMR_AF=0.15;AFR_AF=0.05;EUR_AF=0.27 GT:DS:GL 1|1:2:-5,-1.43,-0.02 0|0:0:-0,-2.95,-5 0|0:0:-0,-4.1,-5 1|0:1:-1.68,-0.01,-5 0|0:0:-0,-2.06,-5 22 50556405 rs187073527 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.7877;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.02,-1.33,-5 22 50556415 rs190373960 A T 100 PASS LDAF=0.0009;AN=2184;THETA=0.0001;VT=SNP;AA=A;RSQ=0.9304;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.3,-5 0|0:0:-0.67,-0.11,-1.74 0|0:0:-0.01,-1.83,-5 22 50556465 rs146471731 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.5875;AVGPOST=0.9984;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.06,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.56,-5 0|0:0:-0.02,-1.31,-5 22 50556487 rs138224 G A 100 PASS AC=343;THETA=0.0002;LDAF=0.1567;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9985;AVGPOST=0.9995;AF=0.16;ASN_AF=0.0035;AMR_AF=0.16;AFR_AF=0.16;EUR_AF=0.27 GT:DS:GL 1|1:2:-5,-1.16,-0.03 0|0:0:-0,-3.07,-5 0|0:0:-0,-4.7,-5 1|0:1:-5,0,-5 0|0:0:-0,-2.11,-5 22 50556611 rs182661817 A G 100 PASS AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.942;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.59,-5 0|0:0:-0,-4.7,-5 0|0:0.1:-0,-3.12,-5 0|1:1:-5,-0,-2.22 22 50556617 rs139158331 G A 100 PASS RSQ=0.7393;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-3.03,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.86,-5 0|0:0:-0.01,-1.83,-5 22 50556652 rs71316997 C CCATTGTTTGAAT 1203 PASS ERATE=0.0063;AN=2184;AC=842;VT=INDEL;THETA=0.0006;LDAF=0.3777;RSQ=0.9303;AVGPOST=0.9553;AF=0.39;ASN_AF=0.3;AMR_AF=0.49;AFR_AF=0.26;EUR_AF=0.48 GT:DS:GL 1|1:2:-17.9,-0.3,0 1|1:2:0,0,0 0|0:0.05:0,0,0 1|0:1:-35,0,-9.8 0|0:0.05:0,0,0 22 50556656 rs112580642 T C 100 PASS RSQ=0.9672;AA=T;AN=2184;AC=8;AVGPOST=0.9997;VT=SNP;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.13,-5 0|0:0:-0,-2.38,-5 22 50556736 rs909693 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.9957;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.1003;AC=218;AF=0.1;ASN_AF=0.12;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.51,-5 1|0:1:-3.66,-0,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.11,-0.64,-4.1 22 50556778 rs193215158 T G 100 PASS AA=T;AN=2184;THETA=0.0001;VT=SNP;LDAF=0.0007;RSQ=0.6963;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.1,-5 22 50556787 rs138226 A G 100 PASS ERATE=0.0005;AC=901;AA=G;AN=2184;VT=SNP;LDAF=0.4123;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.9979;AF=0.41;ASN_AF=0.31;AMR_AF=0.53;AFR_AF=0.27;EUR_AF=0.52 GT:DS:GL 1|1:2:-5,-1.16,-0.03 1|1:2:-5,-3.06,-0 0|0:0:0,-5,-5 1|0:1:-5,-0.29,-0.31 0|0:0:-0,-2.89,-5 22 50556815 rs138227 A G 100 PASS ERATE=0.0004;THETA=0.0002;RSQ=0.9982;AN=2184;LDAF=0.4111;VT=SNP;AC=898;AA=A;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.41;ASN_AF=0.31;AMR_AF=0.52;AFR_AF=0.27;EUR_AF=0.52 GT:DS:GL 1|1:2:-5,-2.21,-0 1|1:2:-5,-0.6,-0.12 0|0:0:-0,-2.89,-5 1|0:1:-5,-0.43,-0.2 0|0:0:-0,-2.59,-5 22 50556906 rs185529868 C A 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.6599;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.04,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-2.11,-5 22 50557120 rs138228 C A 100 PASS AA=C;THETA=0.0004;AN=2184;LDAF=0.4112;ERATE=0.0009;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9955;AVGPOST=0.9974;AC=899;AF=0.41;ASN_AF=0.31;AMR_AF=0.52;AFR_AF=0.27;EUR_AF=0.52 GT:DS:GL 1|1:2:-5,-2.54,-0 1|1:2:-5,-4.4,-0 0|0:0:-0,-2.53,-5 1|0:1:-5,-0.06,-0.92 0|0:0:-0,-3.15,-5 22 50557235 rs9617081 T G 100 PASS ERATE=0.0004;LDAF=0.1628;RSQ=0.9963;AA=T;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=355;THETA=0.0003;AF=0.16;ASN_AF=0.22;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.82,-5 1|0:1:-4.22,-0,-1.97 0|0:0:-0.06,-0.9,-5 0|0:0:-0.19,-0.46,-2.16 22 50557407 rs138229 A G 100 PASS AC=682;RSQ=0.9882;AN=2184;LDAF=0.3126;THETA=0.0005;VT=SNP;ERATE=0.0026;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9932;AF=0.31;ASN_AF=0.19;AMR_AF=0.35;AFR_AF=0.24;EUR_AF=0.43 GT:DS:GL 1|1:2:-5,-1.47,-0.02 0|1:1:-0.02,-1.32,-5 0|0:0:-0.02,-1.29,-5 1|0:1:-4.7,-0.03,-1.16 0|0:0:-0,-3.27,-5 22 50557431 rs143183796 G A 100 PASS AA=G;AN=2184;RSQ=0.8251;AVGPOST=0.9996;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.54,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0,-2.44,-5 22 50557463 rs9617082 G A 100 PASS 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rs188416256 C T 100 PASS AA=C;AN=2184;VT=SNP;LDAF=0.0006;RSQ=0.4975;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AVGPOST=0.9992;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-3.19,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.01,-1.78,-5 22 50558107 rs181353776 C T 100 PASS RSQ=0.6829;AA=C;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-2.81,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.02,-1.31,-5 22 50558162 rs147095949 T G 100 PASS AA=T;AN=2184;AC=8;LDAF=0.0043;VT=SNP;RSQ=0.9121;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;THETA=0.0003;AF=0.0037;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.02,-1.34,-5 22 50558288 rs184254488 C T 100 PASS 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AT A 252 PASS THETA=0.0004;LDAF=0.0291;AN=2184;VT=INDEL;RSQ=0.9413;AC=64;ERATE=0.0006;AVGPOST=0.996;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:0,-1.2,-19.2 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-9.6 0|0:0:0,0,0 22 50559953 rs138233 G A 100 PASS AVGPOST=0.9986;LDAF=0.1431;THETA=0.0002;RSQ=0.9959;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=312;ERATE=0.0003;AF=0.14;ASN_AF=0.01;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.29 GT:DS:GL 1|1:2:-5,-1.16,-0.03 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-2.74,-5 1|0:1:-4.4,-0.02,-1.45 0|0:0:-0.01,-1.61,-5 22 50559979 rs139879926 G A 100 PASS THETA=0.0002;AA=G;AN=2184;RSQ=0.9684;AC=16;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0073;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.49,-5 0|0:0:-0,-2.62,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.56,-5 22 50560007 rs114287232 A G 100 PASS AN=2184;AC=13;VT=SNP;AVGPOST=0.998;LDAF=0.0064;AA=A;RSQ=0.8851;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0,-3.34,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0,-2.07,-5 22 50560049 rs143357353 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.4689;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-4,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.32,-5 22 50560062 rs190066813 C T 100 PASS AA=C;AN=2184;RSQ=0.6896;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.5,-5 0|0:0:-0,-3.4,-5 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0,-2.11,-5 22 50560077 rs145586510 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0013;THETA=0.0015;AA=G;AN=2184;RSQ=0.5598;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.28,-5 0|0:0:-0,-2.49,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-2.33,-5 22 50560100 rs148480858 G A 100 PASS 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AVGPOST=0.9985;AA=C;THETA=0.0002;AN=2184;RSQ=0.8418;LDAF=0.0032;AC=6;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.93,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-3.3,-5 0|0:0:-0.05,-0.95,-5 0|0:0:0,-5,-5 22 50560628 rs182964094 A C 100 PASS AVGPOST=0.9986;AN=2184;VT=SNP;RSQ=0.5706;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0012;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.88,-5 0|0:0:-0,-3.4,-5 0|0:0:-0.05,-0.95,-5 0|0:0:0,-5,-5 22 50560769 rs9617083 G T 100 PASS ERATE=0.0005;AA=T;AN=2184;AC=569;VT=SNP;RSQ=0.9952;SNPSOURCE=LOWCOV;AVGPOST=0.9974;LDAF=0.2614;THETA=0.0003;AF=0.26;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.19;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 1|1:2:-5,-3.8,-0 0|0:0:-0,-4.7,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-4.7,-5 22 50560842 rs142325030 T C 100 PASS AA=T;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.6862;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-4,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.1,-5 22 50561075 rs187704102 C G 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.8674;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.14,-5 22 50561202 rs116761959 T A 100 PASS AC=7;AVGPOST=0.9994;LDAF=0.0035;AA=T;AN=2184;VT=SNP;THETA=0.003;RSQ=0.9152;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.19,-0.46,-2.21 0|0:0:-0.06,-0.92,-5 0|0:0:-0.03,-1.15,-5 22 50561222 rs9617084 A T 100 PASS THETA=0.0002;AN=2184;AVGPOST=0.9702;ERATE=0.0032;RSQ=0.9203;LDAF=0.1538;VT=SNP;AA=-;AC=332;SNPSOURCE=LOWCOV;AF=0.15;ASN_AF=0.2;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 1|0:0.95:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.95,-5 0|0:0:-0.03,-1.11,-5 22 50561225 . TA T 142 PASS AVGPOST=0.7453;LDAF=0.3458;AN=2184;VT=INDEL;THETA=0.0011;ERATE=0.0575;AC=702;RSQ=0.5769;AF=0.32;ASN_AF=0.26;AMR_AF=0.37;AFR_AF=0.2;EUR_AF=0.42 GT:DS:GL 1|0:0.85:0,0,0 1|1:1.5:0,0,0 1|0:1.15:-3,-0.3,0 0|0:0.65:0,-0.5,-8.2 0|1:0.8:0,0,0 22 50561226 rs55649847 AT A 298 PASS AN=2184;RSQ=0.8997;ERATE=0.0136;VT=INDEL;LDAF=0.4148;AVGPOST=0.9363;AC=904;THETA=0.0003;AF=0.41;ASN_AF=0.31;AMR_AF=0.52;AFR_AF=0.29;EUR_AF=0.52 GT:DS:GL 1|1:2:-3.4,-0.3,0 1|1:1.8:0,0,0 0|0:0.2:0,0,0 0|1:1:-2.5,0,-7.2 0|1:0.7:0,0,0 22 50561271 rs146412066 C T 100 PASS ERATE=0.0004;LDAF=0.0009;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.4816;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.13,-0.6,-3.04 0|0:0:-0.08,-0.78,-4.7 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.02,-1.29,-5 22 50561302 rs13433633 G A 100 PASS ERATE=0.0004;RSQ=0.968;LDAF=0.0391;AA=g;AN=2184;AC=83;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AF=0.04;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.16,-0.51,-2.56 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.19,-0.46,-2.18 22 50561364 rs9617030 G A 100 PASS LDAF=0.2415;ERATE=0.0013;AVGPOST=0.9933;AA=G;AN=2184;RSQ=0.9876;VT=SNP;AC=522;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.1;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.01,-5 1|1:2:-5,-1.55,-0.01 0|0:0:-0.01,-1.86,-5 0|0:0:-0.17,-0.5,-2.84 0|0:0.25:-0.12,-0.63,-4 22 50561417 rs9617031 A G 100 PASS LDAF=0.242;AN=2184;RSQ=0.9927;AVGPOST=0.9967;VT=SNP;AA=A;AC=527;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.08,-5 1|1:2:-5,-0.96,-0.05 0|0:0:-0.01,-1.48,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.11,-0.64,-4.1 22 50561456 rs138235 C T 100 PASS AA=C;THETA=0.0002;AVGPOST=0.9966;AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.9904;LDAF=0.1545;SNPSOURCE=LOWCOV;AC=337;AF=0.15;ASN_AF=0.0035;AMR_AF=0.17;AFR_AF=0.1;EUR_AF=0.29 GT:DS:GL 1|1:2:-5,-2.51,-0 0|0:0.5:-0.02,-1.29,-5 0|0:0:-0,-2.75,-5 1|0:1:-1.57,-0.03,-1.45 0|0:0:-0.13,-0.6,-3.7 22 50561570 rs182786543 A C 100 PASS ERATE=0.0005;RSQ=0.3174;THETA=0.0004;AN=2184;VT=SNP;AA=A;AVGPOST=0.9969;LDAF=0.002;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.02,-1.31,-5 0|0:0:-0.2,-0.45,-1.88 0|0:0:-0.19,-0.45,-2.13 22 50561584 rs9617085 C T 100 PASS AVGPOST=0.9957;AA=C;AN=2184;AC=364;RSQ=0.9877;LDAF=0.1674;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;AF=0.17;ASN_AF=0.23;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.08,-0.79,-4.1 1|0:1:-2.03,-0,-3.1 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.48,-0.48,-0.48 22 50561590 rs9617032 G A 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;LDAF=0.2409;VT=SNP;AA=A;RSQ=0.9941;AC=527;AVGPOST=0.997;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.02,-1.43,-5 1|1:2:-5,-0.95,-0.05 0|0:0:-0.08,-0.78,-5 0|0:0:-0.25,-0.4,-1.36 0|0:0:-0.48,-0.48,-0.48 22 50561729 rs141684167 C A 100 PASS ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;RSQ=0.6071;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.68,-5 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-2.09,-5 22 50561740 rs187369690 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.8625;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.27,-5 0|0:0:-0,-3.3,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.84,-5 0|0:0:-0,-2.74,-5 22 50561798 rs138236 T G 100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.1955;RSQ=0.9986;SNPSOURCE=LOWCOV;AC=428;ERATE=0.0003;AVGPOST=0.9995;AF=0.2;ASN_AF=0.05;AMR_AF=0.23;AFR_AF=0.18;EUR_AF=0.3 GT:DS:GL 1|1:2:-5,-1.69,-0.01 0|0:0:-0,-2.36,-5 0|0:0:-0.01,-1.59,-5 1|0:1:-5,-0,-2.8 0|0:0:-0.04,-1.1,-5 22 50561801 rs150454370 A G 100 PASS AVGPOST=0.9985;AC=18;LDAF=0.0083;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9293;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.35,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.02,-1.3,-5 22 50561843 rs192830808 G C 100 PASS AA=G;AN=2184;RSQ=0.8216;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.05,-0.96,-5 0|0:0:-0.05,-1,-5 22 50561850 rs138299363 A G 100 PASS 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A G 100 PASS AVGPOST=1;AN=2184;RSQ=0;VT=SNP;LDAF=0;AA=A;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50563906 . A T 100 PASS AVGPOST=1;AN=2184;THETA=0.006;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50563961 rs140640371 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50563972 rs186275301 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50564143 rs116003885 G A 100 PASS AVGPOST=1;LDAF=0.0041;AA=G;AN=2184;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9947;THETA=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50564145 rs9617086 T A 100 PASS 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0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.3,-5 22 50564380 rs9617087 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;LDAF=0.2421;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9985;AC=529;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-3.01,-5 1|1:1.95:-2.4,-0.12,-0.63 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.09,-5 22 50564413 rs138242 A G 100 PASS AC=1956;THETA=0.0002;RSQ=0.9162;LDAF=0.8904;AA=G;AN=2184;AVGPOST=0.9776;ERATE=0.0024;VT=SNP;SNPSOURCE=LOWCOV;AF=0.9;ASN_AF=0.91;AMR_AF=0.9;AFR_AF=0.89;EUR_AF=0.89 GT:DS:GL 1|1:2:-5,-2.7,-0 1|1:1.6:-0.4,-0.45,-0.61 1|1:1.95:-0.22,-0.43,-1.82 1|0:1:-1.81,-0.01,-3.36 0|0:0:-0.01,-1.88,-5 22 50564419 rs9617088 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AVGPOST=0.9888;AN=2184;VT=SNP;LDAF=0.2303;SNPSOURCE=LOWCOV;AC=506;RSQ=0.979;AF=0.23;ASN_AF=0.31;AMR_AF=0.32;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.86,-5 1|1:1.6:-0.4,-0.45,-0.61 0|0:0:-0.22,-0.42,-1.78 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.86,-5 22 50564442 rs9617034 C T 100 PASS ERATE=0.0004;RSQ=0.9807;AA=C;AN=2184;VT=SNP;LDAF=0.2299;SNPSOURCE=LOWCOV;AC=504;AVGPOST=0.9898;THETA=0.0003;AF=0.23;ASN_AF=0.31;AMR_AF=0.32;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-3.12,-5 1|1:1.6:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.21,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.01,-1.93,-5 22 50564510 rs9617089 T C 100 PASS THETA=0.0002;AA=T;AN=2184;RSQ=0.9987;VT=SNP;AC=530;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.2428;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-3.74,-5 1|1:2:-5,-0.38,-0.24 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-4.4,-5 22 50564527 rs141027867 C G 100 PASS LDAF=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.7557;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-2,-5 0|0:0:-0,-3.4,-5 0|0:0:0,-5,-5 22 50564535 rs5771077 T C 100 PASS THETA=0.0002;AA=T;AN=2184;VT=SNP;RSQ=0.9995;LDAF=0.1623;AC=354;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.16;ASN_AF=0.22;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.19 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.59,-5 1|0:1:-5,0,-5 0|0:0:-0,-3.44,-5 0|0:0:0,-5,-5 22 50564536 rs150252067 T G 100 PASS AVGPOST=1;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.84,-5 0|0:0:-0,-2.21,-5 0|0:0:-0,-3.18,-5 0|0:0:0,-5,-5 22 50564583 rs139006116 T A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=1;ERATE=0.0003;THETA=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50564618 rs3830747 A AT 704 PASS ERATE=0.0004;AVGPOST=0.9963;THETA=0.0004;AN=2184;VT=INDEL;RSQ=0.9928;LDAF=0.2434;AC=532;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-0.9,-9.2 1|1:2:0,0,0 0|0:0:0,-1.2,-12.1 0|0:0:0,-0.3,-3.1 0|0:0:0,-0.3,-3.1 22 50564738 . A G 100 PASS RSQ=0.9049;AN=2184;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50564750 rs138243 C A 100 PASS LDAF=0.0088;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9868;ERATE=0.0003;AC=19;THETA=0.0003;AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50564772 rs76956804 C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50564773 rs190713541 C T 100 PASS RSQ=0.9682;AA=C;AN=2184;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AVGPOST=0.9999;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50564836 rs183272895 T C 100 PASS AVGPOST=1;AA=T;AN=2184;LDAF=0.0046;VT=SNP;AC=10;RSQ=0.9952;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0046;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50564874 rs187915944 A G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.854;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50564923 rs144602839 T C 100 PASS AVGPOST=0.9994;AA=T;AN=2184;AC=13;VT=SNP;THETA=0.0011;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9623;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|1:1:-5,0,-5 0|0:0:-0,-2.37,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.03,-1.23,-5 0|0:0:0,-5,-5 22 50565031 . GCT G 226 PASS THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=INDEL;LDAF=0.0193;RSQ=0.9933;ERATE=0.0003;AC=42;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:0,-1.5,-28.1 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-11.2 0|0:0:0,0,0 22 50565104 rs78064635 G T 100 PASS AC=47;AA=G;AN=2184;LDAF=0.0222;VT=SNP;RSQ=0.9845;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AVGPOST=0.9992;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-3.3,-5 0|1:0.9:-0.03,-1.16,-5 1|1:2:-5,-2.2,-0 22 50565131 rs138504854 T C 100 PASS LDAF=0.0016;AA=T;AN=2184;RSQ=0.8679;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.08,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.97,-5 22 50565162 rs192895430 G T 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.753;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0,-3.7,-5 22 50565314 rs6010138 A G 100 PASS ERATE=0.0004;AC=1408;AA=G;AN=2184;THETA=0.0001;VT=SNP;RSQ=0.9983;AVGPOST=0.9991;LDAF=0.6448;SNPSOURCE=LOWCOV;AF=0.64;ASN_AF=0.58;AMR_AF=0.75;AFR_AF=0.49;EUR_AF=0.74 GT:DS:GL 1|1:2:-5,-1.42,-0.02 1|1:2:-5,-3.06,-0 1|0:1:-5,0,-5 1|0:1:-1.32,-0.02,-5 0|0:0:-0,-2.11,-5 22 50565367 rs138244 C T 100 PASS ERATE=0.0004;AC=1054;THETA=0.0002;LDAF=0.4826;AA=T;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.9983;SNPSOURCE=LOWCOV;AF=0.48;ASN_AF=0.37;AMR_AF=0.58;AFR_AF=0.44;EUR_AF=0.55 GT:DS:GL 1|1:2:-5,-1.69,-0.01 1|1:2:-5,-2.21,-0 0|0:0:-0,-2.49,-5 1|0:1:-5,-0,-2.48 0|0:0:-0.01,-1.82,-5 22 50565479 rs141540680 G A 100 PASS RSQ=0.8331;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-2.92,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.01,-1.57,-5 22 50565519 rs117241462 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AC=23;LDAF=0.0113;SNPSOURCE=LOWCOV;RSQ=0.9427;THETA=0.0003;AVGPOST=0.9982;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-3.03,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-2.45,-5 0|0:0:-0,-2.07,-5 22 50565580 rs80156036 C A 100 PASS ERATE=0.0004;LDAF=0.0009;AA=C;AN=2184;VT=SNP;RSQ=0.3745;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0,-2.23,-5 0|0:0:-0.04,-1.03,-5 22 50565583 rs4838807 A G 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9989;AC=527;LDAF=0.2413;SNPSOURCE=LOWCOV;RSQ=0.9974;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.02,-5 1|1:2:-5,-0.72,-0.09 0|0:0:-0.11,-0.64,-3.22 0|0:0:-0,-2.04,-5 0|0:0:-0.06,-0.88,-5 22 50565632 rs183769732 C T 100 PASS LDAF=0.0009;AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.9294;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.33,-0.27,-5 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.02,-1.35,-5 22 50565638 rs4838841 A G 100 PASS RSQ=0.9992;THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9997;LDAF=0.2422;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=529;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.08,-5 1|1:2:-5,-1.89,-0.01 0|0:0:-0,-2.61,-5 0|0:0:-0.01,-1.87,-5 0|0:0:-0.02,-1.36,-5 22 50565689 rs73185375 G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;RSQ=0.9923;AVGPOST=0.998;LDAF=0.1006;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=218;AF=0.1;ASN_AF=0.13;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.94,-5 1|0:1:-5,-0.12,-0.61 0|0:0:-0.02,-1.35,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.01,-1.59,-5 22 50565755 rs117350614 G A 100 PASS AA=G;AN=2184;AC=49;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9942;THETA=0.0007;ERATE=0.0003;LDAF=0.0225;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-3.05,-5 0|0:0:-0,-3.52,-5 0|0:0:-0.01,-1.91,-5 0|0:0:-0.02,-1.33,-5 22 50565838 rs187905794 C G 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.6929;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.58,-5 22 50565851 rs192940435 G A 100 PASS RSQ=0.6437;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.23,-5 0|0:0:-0.02,-1.36,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-2.69,-5 0|0:0:-0,-3.36,-5 22 50565908 rs4838808 A G 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.2446;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9951;AVGPOST=0.9974;AC=533;AF=0.24;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 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rs12167156 G A 100 PASS ERATE=0.0004;THETA=0.0002;LDAF=0.0035;AA=G;AN=2184;AVGPOST=0.9981;AC=6;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7848;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.07,-0.84,-4.4 0|0:0:-0.04,-1.04,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-2.35,-5 22 50566167 rs191591543 T C 100 PASS ERATE=0.0004;THETA=0.0002;AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7282;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.42,-5 0|0:0:-0,-3.42,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-2.36,-5 22 50566182 rs9617035 T G 100 PASS AA=G;AN=2184;ERATE=0.0009;LDAF=0.2424;THETA=0.0005;VT=SNP;AC=530;RSQ=0.9941;SNPSOURCE=LOWCOV;AVGPOST=0.9974;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 1|1:2:-5,-1.72,-0.01 0|0:0:-0,-2.88,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.53,-5 22 50566209 rs13057953 T G 100 PASS 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A G 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;LDAF=0.0014;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50566950 rs181017574 T G 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50567038 rs138245 A G 100 PASS AN=2184;VT=SNP;THETA=0.0027;RSQ=0.9965;AA=A;SNPSOURCE=LOWCOV;AC=312;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.1423;AF=0.14;ASN_AF=0.0035;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.29 GT:DS:GL 1|1:2:-5,-4.1,-0 0|0:0:-0.03,-1.24,-5 0|0:0:-0.04,-1.02,-5 1|0:1:-5,-0.01,-1.56 0|0:0:0,-5,-5 22 50567141 rs113945093 T C 100 PASS THETA=0.0002;LDAF=0.0042;AA=T;AN=2184;VT=SNP;AC=9;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9741;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.91,-5 0|0:0:-0.13,-0.59,-3.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.67,-5 0|0:0:-0.09,-0.72,-5 22 50567268 rs13054520 G A 100 PASS AC=306;THETA=0.0009;ERATE=0.0004;AVGPOST=0.9936;LDAF=0.1399;AA=G;AN=2184;RSQ=0.9796;VT=SNP;SNPSOURCE=LOWCOV;AF=0.14;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0,-2.15,-5 0|1:0.8:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.57,-2.79 0|0:0:-0.12,-0.62,-3.52 0|0:0:-0.17,-0.48,-3.3 22 50567345 rs138246 G C 100 PASS ERATE=0.0004;AVGPOST=0.9985;RSQ=0.9917;AA=C;AC=1991;LDAF=0.9109;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AF=0.91;ASN_AF=0.91;AMR_AF=0.93;AFR_AF=0.91;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-1.14,-0.03 1|1:2:-4.7,-0.61,-0.12 1|1:2:-2.88,-0.47,-0.18 1|0:1:-1.99,-0,-3.49 0|0:0:-0.01,-1.84,-5 22 50567405 . 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LDAF=0.0016;RSQ=0.4597;AN=2184;AVGPOST=0.9979;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.88,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.01,-1.68,-5 22 50568846 rs909694 A C 100 PASS ERATE=0.0004;AN=2184;AC=89;AVGPOST=0.999;VT=SNP;LDAF=0.0415;AA=A;RSQ=0.9894;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.04;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.14;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.11,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.1,-5 22 50568906 rs17836626 C T 100 PASS ERATE=0.0004;RSQ=0.9752;AA=C;THETA=0.0004;AN=2184;LDAF=0.0423;VT=SNP;AC=92;AVGPOST=0.997;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.12;AMR_AF=0.06;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0,-2.94,-5 0|0:0:-0.01,-1.49,-5 0|0:0:0,-5,-5 22 50568914 rs184989581 C G 100 PASS RSQ=0.6589;AA=C;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-4.7,-5 22 50568930 rs190280829 G A 100 PASS THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7651;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-2.58,-5 0|0:0:-0.01,-1.8,-5 0|0:0:0,-5,-5 22 50568967 rs146640212 G A 100 PASS AVGPOST=0.9977;AA=G;AN=2184;THETA=0.0005;RSQ=0.8155;VT=SNP;AC=10;ERATE=0.001;SNPSOURCE=LOWCOV;LDAF=0.0051;AF=0.0046;ASN_AF=0.0017;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.13,-5 0|0:0:-0.12,-0.61,-5 0|0:0:-0,-3.21,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-4,-5 22 50569006 rs35981976 AG A 312 PASS THETA=0.0002;AVGPOST=0.9864;AN=2184;ERATE=0.0009;VT=INDEL;RSQ=0.9726;AC=521;LDAF=0.2362;AF=0.24;ASN_AF=0.31;AMR_AF=0.32;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 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0|0:0:-0.06,-0.86,-5 0|0:0:-0.48,-0.48,-0.48 22 50569616 rs138248 T C 100 PASS RSQ=0.9108;AVGPOST=0.9888;AA=T;AN=2184;ERATE=0.0009;VT=SNP;THETA=0.0006;AC=103;SNPSOURCE=LOWCOV;LDAF=0.0476;AF=0.05;ASN_AF=0.0017;AMR_AF=0.07;AFR_AF=0.01;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0.24,-0.41,-1.53 0|0:0.2:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.88,-5 0|0:0:-0.48,-0.48,-0.48 22 50569620 rs112936000 G A 100 PASS LDAF=0.0172;ERATE=0.0027;THETA=0.0004;AA=G;AN=2184;RSQ=0.7342;VT=SNP;AC=31;SNPSOURCE=LOWCOV;AVGPOST=0.9881;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0.14,-0.56,-3.38 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50569667 rs2340599 A G 100 PASS AC=602;ERATE=0.0004;LDAF=0.2758;AN=2184;AVGPOST=0.9967;VT=SNP;AA=A;RSQ=0.9936;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.28;ASN_AF=0.31;AMR_AF=0.36;AFR_AF=0.24;EUR_AF=0.23 GT:DS:GL 0|0:0.05:-0.18,-0.47,-2.45 1|1:2:-5,-2.63,-0 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.19,-0.46,-2.17 22 50569719 rs75190522 A T 100 PASS THETA=0.0002;AN=2184;VT=SNP;AC=31;AA=A;RSQ=0.9182;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0003;LDAF=0.0146;AF=0.01;ASN_AF=0.05 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.1,-5 0|0:0:-0,-2.4,-5 0|0:0:-0.18,-0.47,-2.17 0|0:0:-0.07,-0.85,-5 22 50569777 rs147423154 G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.8156;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;AVGPOST=0.9992;LDAF=0.0017;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.61,-5 0|0:0:-0,-3.32,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.64,-5 22 50569790 rs138249 C T 100 PASS RSQ=0.9892;AC=1054;ERATE=0.0023;LDAF=0.4836;AA=T;AN=2184;VT=SNP;AVGPOST=0.993;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.48;ASN_AF=0.36;AMR_AF=0.58;AFR_AF=0.45;EUR_AF=0.55 GT:DS:GL 1|1:2:-5,-1.37,-0.02 1|1:2:-5,-1.58,-0.01 0|0:0:-0,-2.19,-5 1|0:1:-5,-0.05,-0.94 0|0:0:-0,-2.53,-5 22 50569849 rs183975820 C T 100 PASS AVGPOST=0.9985;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.6075;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.62,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-4,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.37,-5 22 50569960 rs188656536 C T 100 PASS AA=C;THETA=0.0004;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.98,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-3.62,-5 22 50570138 rs4838845 A G 100 PASS ERATE=0.0005;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.2421;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=529;RSQ=0.9979;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.22,-5 1|1:2:-5,-1.25,-0.02 0|0:0:-0.01,-1.55,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.48,-0.48,-0.48 22 50570163 rs71317001 AAG A 650 PASS ERATE=0.0082;RSQ=0.9513;AN=2184;AVGPOST=0.9754;VT=INDEL;THETA=0.0011;LDAF=0.2489;AC=535;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.12;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-1.2,-16.6 1|1:2:-1,-0.3,0 0|0:0:0,-0.3,-2.6 0|0:0:0,0,0 0|0:0:0,0,0 22 50570283 rs9617036 C G 100 PASS AVGPOST=0.9985;RSQ=0.9966;AA=C;LDAF=0.2431;AN=2184;AC=531;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.38,-5 1|1:2:-5,-2.8,-0 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2,-5 0|0:0:-0,-2.11,-5 22 50570361 rs138250 A G 100 PASS ERATE=0.0004;AVGPOST=0.9986;LDAF=0.4831;AN=2184;VT=SNP;AC=1055;SNPSOURCE=LOWCOV;AA=a;RSQ=0.9975;THETA=0.0003;AF=0.48;ASN_AF=0.37;AMR_AF=0.58;AFR_AF=0.44;EUR_AF=0.55 GT:DS:GL 1|1:2:-5,-2.74,-0 1|1:2:-5,-1.57,-0.01 0|0:0:-0,-2.34,-5 1|0:1:-0.11,-0.66,-4.4 0|0:0:-0.04,-1.04,-5 22 50570366 rs9617093 G T 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9954;VT=SNP;AVGPOST=0.998;AC=532;SNPSOURCE=LOWCOV;THETA=0.0003;LDAF=0.2439;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.96,-5 1|1:2:-5,-2.2,-0 0|0:0:-0,-2.75,-5 0|0:0:-0.17,-0.5,-2.82 0|0:0:-0.07,-0.86,-5 22 50570384 rs180774345 A G 100 PASS AN=2184;VT=SNP;RSQ=0.6426;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-1.94,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.02,-1.32,-5 22 50570428 rs73185384 G A 100 PASS THETA=0.0009;AA=G;AN=2184;RSQ=0.9954;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.1023;AC=222;AF=0.1;ASN_AF=0.13;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.49,-5 1|0:1:-5,-0,-2.77 0|0:0:-0.02,-1.33,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.34,-5 22 50570487 rs186137735 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0026;AVGPOST=0.9971;AC=5;SNPSOURCE=LOWCOV;RSQ=0.6624;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.09,-5 22 50570565 rs191863650 T C 100 PASS AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7497;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.39,-5 22 50570598 rs139793650 A G 100 PASS THETA=0.0002;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6548;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0,-2.58,-5 22 50570612 rs141831552 G T 100 PASS AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8366;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0012;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-3.09,-5 0|0:0:-0,-3.59,-5 0|0:0:-0.41,-0.22,-2.13 0|0:0:-0,-3.7,-5 22 50570755 rs75570992 G C 100 PASS RSQ=0.9795;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;LDAF=0.0231;SNPSOURCE=LOWCOV;AC=50;ERATE=0.0003;AF=0.02;AMR_AF=0.03;AFR_AF=0.0041;EUR_AF=0.05 GT:DS:GL 1|0:1:-5,-0.1,-0.69 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.84,-5 22 50570804 rs182402475 A G 100 PASS ERATE=0.0004;RSQ=0.6829;THETA=0.0002;AN=2184;VT=SNP;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.59,-5 22 50570852 rs138251 A G 100 PASS THETA=0.0004;AA=G;AN=2184;AC=1440;AVGPOST=0.9952;LDAF=0.6587;VT=SNP;ERATE=0.001;RSQ=0.9913;SNPSOURCE=LOWCOV;AF=0.66;ASN_AF=0.71;AMR_AF=0.71;AFR_AF=0.49;EUR_AF=0.71 GT:DS:GL 1|1:2:-5,-0.9,-0.06 1|1:2:-5,-2.46,-0 0|1:1:-5,-0,-3.8 1|0:1:-5,-0.67,-0.1 0|0:0:-0,-4.22,-5 22 50570870 rs187389118 A T 100 PASS THETA=0.0014;AN=2184;AVGPOST=0.9997;LDAF=0.0015;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;RSQ=0.9134;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0,-3.92,-5 22 50570873 rs138252 G T 100 PASS AC=1052;AVGPOST=0.9957;LDAF=0.4813;THETA=0.0004;AA=T;AN=2184;RSQ=0.9927;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;AF=0.48;ASN_AF=0.37;AMR_AF=0.58;AFR_AF=0.44;EUR_AF=0.55 GT:DS:GL 1|1:2:-5,-1.43,-0.02 1|1:2:-5,-0.72,-0.09 0|0:0:-0,-3.7,-5 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0,-3.85,-5 22 50570877 rs9617094 A G 100 PASS ERATE=0.0005;AVGPOST=0.9977;AN=2184;VT=SNP;AA=A;AC=530;SNPSOURCE=LOWCOV;RSQ=0.9947;THETA=0.0003;LDAF=0.2429;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.22,-5 1|1:2:-5,-0.71,-0.09 0|0:0:-0,-3.66,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-4.22,-5 22 50570953 rs9617095 G T 100 PASS ERATE=0.0004;RSQ=0.9958;LDAF=0.2404;AA=T;AN=2184;AVGPOST=0.9981;THETA=0.0005;VT=SNP;AC=526;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.48,-5 1|1:2:-5,-2.19,-0 0|0:0:-0,-2.03,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.57,-5 22 50570963 rs71317002 C CAG 966 PASS THETA=0.0004;AN=2184;RSQ=0.9825;VT=INDEL;LDAF=0.4774;AC=1046;ERATE=0.0011;AVGPOST=0.9886;AF=0.48;ASN_AF=0.36;AMR_AF=0.58;AFR_AF=0.44;EUR_AF=0.55 GT:DS:GL 1|1:1.95:-28.2,-1.5,0 1|1:2:-16.9,-0.9,0 0|0:0:0,-0.3,-4.4 1|0:1:-5,0,-3.8 0|0:0:0,0,0 22 50570987 rs9617096 A G 100 PASS AVGPOST=0.9966;AN=2184;AC=531;LDAF=0.2426;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.9921;THETA=0.0003;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.52,-5 1|1:2:-5,-0.98,-0.05 0|0:0:-0.13,-0.6,-3.07 0|0:0:-0,-2.32,-5 0|0:0:-0.1,-0.67,-5 22 50571034 rs9617037 G A 100 PASS ERATE=0.0005;THETA=0.0002;AA=G;AN=2184;RSQ=0.9935;VT=SNP;AVGPOST=0.9971;AC=530;SNPSOURCE=LOWCOV;LDAF=0.2429;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.09,-5 1|1:2:-5,-0.71,-0.09 0|0:0:-0.19,-0.45,-2.19 0|0:0:-0,-2.05,-5 0|0:0:-0.06,-0.91,-5 22 50571048 rs190633797 T C 100 PASS ERATE=0.0005;THETA=0.0002;AA=T;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;RSQ=0.5004;AVGPOST=0.9978;AC=3;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.21,-0.43,-1.94 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.77,-5 0|0:0:-0.06,-0.86,-5 22 50571121 rs9617097 C T 100 PASS ERATE=0.0004;RSQ=0.9958;AA=T;AN=2184;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=506;LDAF=0.2316;THETA=0.0007;AF=0.23;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.03,-1.22,-5 1|1:2:-5,-2.49,-0 0|0:0:-0,-4.4,-5 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0,-2.59,-5 22 50571160 rs138254 G C 100 PASS AA=C;RSQ=0.9945;AN=2184;AC=1031;VT=SNP;LDAF=0.4717;AVGPOST=0.9969;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.47;ASN_AF=0.37;AMR_AF=0.58;AFR_AF=0.44;EUR_AF=0.52 GT:DS:GL 1|1:2:-5,-1.14,-0.03 1|1:2:-5,-1.87,-0.01 0|0:0:-0,-2.56,-5 1|0:1.05:-5,-0.9,-0.06 0|0:0:-0,-2.09,-5 22 50571326 rs150625299 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0001;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6328;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 22 50571343 rs139772230 T C 100 PASS ERATE=0.0004;THETA=0.0004;AA=T;AN=2184;RSQ=0.8434;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.2,-0.45,-2.14 0|0:0:-0.01,-1.52,-5 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.19,-0.46,-2.15 22 50571379 rs13056274 T C 100 PASS AA=C;AN=2184;RSQ=0.9729;AC=509;VT=SNP;LDAF=0.232;ERATE=0.0018;SNPSOURCE=LOWCOV;AVGPOST=0.9866;THETA=0.0003;AF=0.23;ASN_AF=0.32;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.24 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50571389 rs13058596 C T 100 PASS LDAF=0.2416;AA=C;AN=2184;AVGPOST=0.9962;THETA=0.0005;VT=SNP;AC=530;RSQ=0.9915;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0.05:-0.1,-0.7,-4.7 1|1:1.95:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.46,-3.04 22 50571442 rs13053165 C T 100 PASS LDAF=0.2438;AA=T;AN=2184;AVGPOST=0.9979;THETA=0.0001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9955;AC=533;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.12;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.2,-5 1|1:2:-5,-1.84,-0.01 0|0:0:-0.03,-1.24,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.11,-0.65,-4.7 22 50571488 rs12628222 T A 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.9972;AC=530;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0003;LDAF=0.2429;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.37,-5 1|1:2:-5,-2.41,-0 0|0:0:-0,-2.35,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.02,-1.36,-5 22 50571530 rs4838846 C T 100 PASS AA=C;THETA=0.0004;RSQ=0.9988;AN=2184;VT=SNP;AC=530;LDAF=0.2427;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.89,-5 1|1:2:-5,-2.85,-0 0|0:0:-0,-3.55,-5 0|0:0:-0.18,-0.48,-2.22 0|0:0:-0.01,-1.84,-5 22 50571653 rs183142990 C T 100 PASS ERATE=0.0004;LDAF=0.0009;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5687;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.62,-5 0|0:0:-0,-2.03,-5 0|0:0:-0,-3.66,-5 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.04,-1.09,-5 22 50571670 rs187115726 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8136;LDAF=0.0029;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9987;THETA=0.0003;AF=0.0023;ASN_AF=0.0017;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-3.17,-5 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.04,-1.1,-5 22 50571897 rs9617038 A G 100 PASS AC=307;ERATE=0.0004;LDAF=0.1399;AA=G;AN=2184;THETA=0.0001;VT=SNP;AVGPOST=0.9976;RSQ=0.9915;SNPSOURCE=LOWCOV;AF=0.14;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|1:1:-2.37,-0.11,-0.66 0|0:0:-0.04,-1.07,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.17 22 50572121 rs190307386 C A 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6712;AVGPOST=0.9982;AF=0.0018;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0.12,-0.62,-3.19 0|0:0:-0.05,-0.93,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0.05:-0.48,-0.48,-0.48 22 50572126 rs112488066 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9979;VT=SNP;AC=10;LDAF=0.0056;RSQ=0.8616;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.95,-5 0|0:0:-0.15,-0.53,-2.65 0|0:0:-0.08,-0.8,-4.7 0|0:0:-0.19,-0.46,-2.37 0|0:0:-0.48,-0.48,-0.48 22 50572174 rs138256 T C 100 PASS AA=T;AN=2184;AC=382;THETA=0.0005;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.1745;ERATE=0.0003;RSQ=0.9974;AF=0.17;ASN_AF=0.0035;AMR_AF=0.19;AFR_AF=0.18;EUR_AF=0.29 GT:DS:GL 1|1:2:-5,-2.72,-0 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:1.05:-0.36,-0.41,-0.77 0|0:0:-0.12,-0.61,-5 22 50572269 rs146629621 G A 100 PASS AA=g;AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.942;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=3;ERATE=0.0007;THETA=0.0003;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0.05:-0.04,-1.02,-5 0|0:0:-0,-1.94,-5 0|0:0:-0,-4.1,-5 22 50572309 rs182166931 T C 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0002;AA=T;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0.01,-1.77,-5 0|0:0:0,-5,-5 22 50572406 rs3736686 A G 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.1618;VT=SNP;AC=353;AA=A;RSQ=0.9998;ERATE=0.0003;AF=0.16;ASN_AF=0.22;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.19 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50572473 rs2340601 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=530;RSQ=0.9998;LDAF=0.2427;THETA=0.0043;ERATE=0.0003;AVGPOST=0.9999;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50572517 rs149227943 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50572542 . T C 100 PASS AVGPOST=1;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0036;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50572743 . A AATTC 966 PASS ERATE=0.0004;RSQ=0.9621;THETA=0.0004;AN=2184;VT=INDEL;AC=509;LDAF=0.2325;AVGPOST=0.98;AF=0.23;ASN_AF=0.29;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-0.9,-17.1 1|1:2:0,0,0 0|0:0:0,-0.3,-3 0|0:0:0,-0.3,-5.7 0|0:0:0,-0.3,-1.5 22 50572746 rs74828492 T TCA 458 PASS THETA=0.0004;AN=2184;RSQ=0.9587;LDAF=0.2296;VT=INDEL;AC=505;AVGPOST=0.9784;ERATE=0.0003;AF=0.23;ASN_AF=0.29;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-0.9,-14.7 1|1:1.8:0,0,0 0|0:0:0,-0.3,-3 0|0:0:0,-0.3,-4.9 0|0:0:0,-0.3,-1.5 22 50572748 . A ATTTT 1059 PASS ERATE=0.0004;RSQ=0.9621;THETA=0.0004;AN=2184;VT=INDEL;AVGPOST=0.9799;AC=506;LDAF=0.2316;AF=0.23;ASN_AF=0.29;AMR_AF=0.34;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-0.9,-17.7 1|1:2:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-5.9 0|0:0:0,0,0 22 50572749 . TGAA T 425 PASS ERATE=0.0004;AN=2184;VT=INDEL;RSQ=0.9593;AVGPOST=0.9784;AC=506;LDAF=0.2316;THETA=0.0003;AF=0.23;ASN_AF=0.29;AMR_AF=0.34;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-0.9,-21.6 1|1:2:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-7.2 0|0:0:0,0,0 22 50572750 rs71904485 GAA G 656 PASS ERATE=0.0004;AN=2184;VT=INDEL;LDAF=0.23;AVGPOST=0.9784;AC=503;RSQ=0.9595;THETA=0.0003;AF=0.23;ASN_AF=0.29;AMR_AF=0.34;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-0.9,-18.3 1|1:2:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-6.1 0|0:0:0,0,0 22 50572765 rs143441761 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9054;THETA=0.0089;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0023;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-1.99,-5 0|0:0:0,-5,-5 22 50572770 rs3736688 A G 100 PASS LDAF=0.2423;THETA=0.0002;RSQ=0.9988;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=529;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-1.24,-0.03 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.3,-5 0|0:0:0,-5,-5 22 50572812 rs187881740 T A 100 PASS RSQ=0.878;AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50573036 . A G 100 PASS AVGPOST=1;LDAF=0.0027;THETA=0.0002;AN=2184;AC=6;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;ERATE=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573081 rs3736690 T G 100 PASS LDAF=0.2313;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.9998;AC=506;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.23;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.2 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573090 . C G 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573105 rs140714176 C T 100 PASS LDAF=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8999;VT=SNP;AC=1;ERATE=0.0003;THETA=0.0024;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573106 rs193023657 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;RSQ=0.9844;VT=SNP;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573108 . C T 100 PASS RSQ=0.9049;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573143 rs145830036 G A 100 PASS ERATE=0.0004;THETA=0.0004;RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573157 rs76303459 A C 100 PASS AVGPOST=1;LDAF=0.0027;AN=2184;THETA=0.0005;VT=SNP;AA=A;AC=5;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573166 rs184011991 G A 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573174 rs138742811 G A 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573223 rs3736691 C T 100 PASS AVGPOST=1;AA=C;RSQ=0.9999;AN=2184;VT=SNP;AC=530;LDAF=0.2427;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50573329 rs117928164 T C 100 PASS RSQ=0.9405;THETA=0.0002;AA=T;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.01,-1.8,-5 0|0:0:0,-5,-5 22 50573612 rs71311688 T G 100 PASS ERATE=0.0004;AC=377;AA=T;AN=2184;RSQ=0.9851;VT=SNP;AVGPOST=0.9948;SNPSOURCE=LOWCOV;LDAF=0.1734;THETA=0.0003;AF=0.17;ASN_AF=0.21;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.08,-0.78,-5 1|0:1:-0.21,-0.43,-1.83 0|0:0:-0.18,-0.48,-2.22 0|0:0:-0.48,-0.48,-0.48 22 50573690 rs12628151 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;LDAF=0.2432;THETA=0.0006;AC=530;SNPSOURCE=LOWCOV;RSQ=0.9975;AVGPOST=0.9987;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-4.1,-5 1|1:2:-5,-0.52,-0.16 0|0:0:-0.14,-0.57,-2.87 0|0:0:-0.05,-0.94,-5 0|0:0:-0.15,-0.54,-3.08 22 50573800 rs138081834 T C 100 PASS AVGPOST=0.9977;AA=T;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;RSQ=0.6497;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0:-0,-2.83,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0,-2.09,-5 22 50573904 rs188959052 G A 100 PASS ERATE=0.0005;RSQ=0.4818;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.998;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-2.17,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.38,-5 0|0:0.1:-0.2,-0.44,-2.01 22 50574030 rs28622129 A G 100 PASS ERATE=0.0004;THETA=0.0002;AVGPOST=0.9983;AN=2184;VT=SNP;AC=82;AA=A;LDAF=0.0386;SNPSOURCE=LOWCOV;RSQ=0.9804;AF=0.04;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.24,-0.41,-1.51 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50574079 rs191998473 C T 100 PASS THETA=0.0002;RSQ=0.3847;AN=2184;VT=SNP;AA=c;AVGPOST=0.998;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.43,-1.63 0|0:0:-0.48,-0.48,-0.48 22 50574144 rs184458347 C A 100 PASS AC=12;AVGPOST=0.9939;LDAF=0.0071;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;RSQ=0.6674;ERATE=0.0007;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50574226 rs117184474 G C 100 PASS RSQ=0.9901;AA=G;AN=2184;AC=49;VT=SNP;LDAF=0.0226;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.04,-1.03,-5 0|0:0:-0.48,-0.48,-0.48 22 50574279 rs60669419 T C 100 PASS AVGPOST=0.9985;AA=T;AN=2184;VT=SNP;RSQ=0.976;LDAF=0.0185;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=39;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.69,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.89,-5 22 50574306 rs144146499 T C 100 PASS AA=T;AN=2184;VT=SNP;RSQ=0.5117;AVGPOST=0.9973;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.39,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-3.17,-5 22 50574388 rs4838847 T A 100 PASS 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100 PASS RSQ=0.9405;THETA=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.12,-0.61,-4 0|0:0:-0.01,-1.65,-5 22 50575171 rs187287641 C T 100 PASS AA=C;AVGPOST=0.9994;RSQ=0.7437;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0.01,-1.88,-5 22 50575194 rs148706460 T G 100 PASS ERATE=0.0004;LDAF=0.0027;AA=T;AN=2184;RSQ=0.8973;VT=SNP;AC=5;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9992;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-3.34,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.02,-1.38,-5 22 50575360 rs2142850 A G 100 PASS AC=537;THETA=0.0014;AA=G;AN=2184;LDAF=0.2459;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.9989;AF=0.25;ASN_AF=0.32;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 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50575634 rs9617100 C A 100 PASS LDAF=0.2353;AA=C;RSQ=0.9929;AN=2184;AC=513;ERATE=0.0009;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.23;ASN_AF=0.32;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.2 GT:DS:GL 0|0:0.05:-0.06,-0.9,-5 1|1:2:-5,-4.1,-0 0|0:0:-0,-3,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.89,-5 22 50575695 rs141423382 G T 100 PASS AA=G;AN=2184;RSQ=0.9019;AVGPOST=0.9997;THETA=0.0005;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.31,-5 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0,-2.39,-5 22 50575747 rs181502671 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;RSQ=0.7053;THETA=0.0008;VT=SNP;AVGPOST=0.9993;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-3.13,-5 0|0:0:-0,-2.8,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.02,-1.35,-5 22 50575765 rs146324428 C G 100 PASS AVGPOST=0.9986;AA=C;THETA=0.0004;AN=2184;AC=20;LDAF=0.0098;VT=SNP;RSQ=0.9445;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.55,-5 0|0:0.05:-0.02,-1.29,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.04,-1.1,-5 22 50575925 rs186179791 G A 100 PASS ERATE=0.0005;RSQ=0.4068;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0019;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.91,-5 0|0:0:-0.02,-1.32,-5 22 50576020 rs9617039 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=512;AVGPOST=0.9953;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9903;LDAF=0.2348;AF=0.23;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.01,-1.51,-5 1|1:2:-5,-2.45,-0 0|0:0:-0.1,-0.69,-4.22 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.48,-0.48,-0.48 22 50576083 rs13053800 A G 100 PASS AVGPOST=0.9884;THETA=0.0004;AA=G;AN=2184;VT=SNP;ERATE=0.001;LDAF=0.2412;SNPSOURCE=LOWCOV;RSQ=0.9769;AC=529;AF=0.24;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.18,-5 1|0:1.1:-0.14,-0.57,-3.52 0|0:0:-0.05,-0.99,-5 0|0:0:-0.17,-0.5,-2.52 0|0:0:-0.1,-0.69,-4.7 22 50576162 rs56760292 T C 100 PASS AA=T;AN=2184;RSQ=0.6461;LDAF=0.0628;VT=SNP;AC=95;ERATE=0.006;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9445;AF=0.04;ASN_AF=0.05;AMR_AF=0.06;AFR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0.05:-0.01,-1.51,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.27,-0.44,-1.03 0|0:0:-0.01,-1.49,-5 0|0:0.4:-0.48,-0.48,-0.48 22 50576170 rs13053991 A T 100 PASS THETA=0.0002;AN=2184;LDAF=0.228;VT=SNP;AC=505;AA=A;RSQ=0.9618;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9816;AF=0.23;ASN_AF=0.3;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.01,-1.51,-5 1|1:1.7:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.25 0|0:0:-0.01,-1.49,-5 0|0:0:-0.48,-0.48,-0.48 22 50576176 rs139986449 A G 100 PASS 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TTA T 74 PASS AC=422;ERATE=0.0064;AVGPOST=0.8981;AN=2184;VT=INDEL;RSQ=0.7636;THETA=0.0003;LDAF=0.2021;AF=0.19;ASN_AF=0.21;AMR_AF=0.29;AFR_AF=0.12;EUR_AF=0.19 GT:DS:GL 0|0:0.05:0,-1.5,-25.7 1|1:1.95:0,0,0 0|0:0:0,0,0 0|0:0.05:0,-0.9,-15.4 0|0:0:0,0,0 22 50576208 rs183309124 T C 100 PASS AA=T;AN=2184;RSQ=0.8158;ERATE=0.0031;THETA=0.0005;VT=SNP;AC=463;LDAF=0.2171;SNPSOURCE=LOWCOV;AVGPOST=0.9123;AF=0.21;ASN_AF=0.27;AMR_AF=0.3;AFR_AF=0.12;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.01,-1.8,-5 1|1:1.85:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 1|0:0.75:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 22 50576210 rs186514987 C T 100 PASS AA=C;RSQ=0.8169;AN=2184;AC=424;ERATE=0.0031;VT=SNP;AVGPOST=0.9218;THETA=0.0006;LDAF=0.1968;SNPSOURCE=LOWCOV;AF=0.19;ASN_AF=0.22;AMR_AF=0.3;AFR_AF=0.11;EUR_AF=0.18 GT:DS:GL 0|0:0:-0.01,-1.79,-5 1|1:1.95:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 22 50576230 . TTA T 92 PASS AC=167;ERATE=0.0166;RSQ=0.3735;AVGPOST=0.7966;AN=2184;VT=INDEL;LDAF=0.152;THETA=0.0003;AF=0.08;ASN_AF=0.06;AMR_AF=0.1;AFR_AF=0.04;EUR_AF=0.1 GT:DS:GL 1|0:1:-8.3,0,-13.6 0|0:0.35:0,0,0 0|0:0.25:0,0,0 0|1:1:-3.3,0,-4.5 0|1:0.75:0,0,0 22 50576232 rs62239265 A T 100 PASS THETA=0.0015;AVGPOST=0.9132;AN=2184;AC=410;VT=SNP;RSQ=0.7934;LDAF=0.1911;ERATE=0.0038;SNPSOURCE=LOWCOV;AA=a;AF=0.19;ASN_AF=0.28;AMR_AF=0.25;AFR_AF=0.1;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.01,-1.8,-5 1|0:1.25:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.48,-0.48,-0.48 22 50576239 rs6010187 T C 100 PASS AVGPOST=0.9527;AN=2184;AC=89;RSQ=0.6706;THETA=0.0005;VT=SNP;ERATE=0.0026;SNPSOURCE=LOWCOV;AA=N;LDAF=0.0573;AF=0.04;ASN_AF=0.05;AMR_AF=0.05;AFR_AF=0.03;EUR_AF=0.04 GT:DS:GL 1|0:1:-3.52,-0,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:1:-2.02,-0.02,-1.45 0|0:0:-0.48,-0.48,-0.48 22 50576249 rs62239266 A C 100 PASS AC=171;RSQ=0.7242;AN=2184;ERATE=0.0024;VT=SNP;AVGPOST=0.9379;AA=-;SNPSOURCE=LOWCOV;LDAF=0.0882;THETA=0.0003;AF=0.08;ASN_AF=0.02;AMR_AF=0.1;AFR_AF=0.07;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|1:0.8:-0.37,-0.44,-0.69 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.48,-0.48,-0.48 22 50576257 rs147793127 T C 100 PASS THETA=0.0032;AN=2184;AC=13;RSQ=0.5993;VT=SNP;AVGPOST=0.9923;AA=-;ERATE=0.0011;SNPSOURCE=LOWCOV;LDAF=0.0082;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.37,-0.44,-0.69 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.16 0|0:0.05:-0.48,-0.48,-0.48 22 50576270 . C CAT 349 PASS LDAF=0.2393;AN=2184;ERATE=0.0044;VT=INDEL;THETA=0.0005;AC=517;AVGPOST=0.9507;RSQ=0.8987;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.21 GT:DS:GL 0|0:0:0,-1.5,-20 1|1:1.85:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50576367 rs182676154 A T 100 PASS ERATE=0.0005;THETA=0.0004;RSQ=0.6912;AN=2184;VT=SNP;LDAF=0.0019;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0,-2.4,-5 22 50576440 rs78819637 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0023;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7598;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.01,-1.61,-5 22 50576545 rs141269204 A G 100 PASS AN=2184;LDAF=0.0015;VT=SNP;AA=A;AVGPOST=0.9998;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;RSQ=0.9267;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.02,-1.29,-5 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0|0:0:-0.48,-0.48,-0.48 22 50577374 rs113439087 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9979;AC=80;VT=SNP;RSQ=0.9754;SNPSOURCE=LOWCOV;LDAF=0.0373;THETA=0.0003;AF=0.04;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.07,-0.86,-5 0|0:0:-0.15,-0.54,-3.22 0|0:0:-0.17,-0.5,-2.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.44,-1.91 22 50577521 rs4838848 A G 100 PASS ERATE=0.0005;AN=2184;VT=SNP;AA=A;RSQ=0.9946;SNPSOURCE=LOWCOV;AC=317;THETA=0.0007;AVGPOST=0.9984;LDAF=0.1449;AF=0.15;ASN_AF=0.19;AMR_AF=0.18;AFR_AF=0.08;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-2.08,-5 0|1:1:-1.99,-0,-3.25 0|0:0:-0,-2.6,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0,-2.87,-5 22 50577576 rs117770973 C T 100 PASS AC=7;AA=C;RSQ=0.8808;AN=2184;LDAF=0.0037;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;THETA=0.0036;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.28,-5 22 50577613 rs4838849 C T 100 PASS ERATE=0.0004;AA=T;AN=2184;RSQ=0.9976;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=538;THETA=0.0007;LDAF=0.2465;AF=0.25;ASN_AF=0.32;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2,-5 1|1:2:-5,-1.58,-0.01 0|0:0:-0.07,-0.81,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.01,-1.51,-5 22 50577682 rs141934060 C T 100 PASS AA=C;AN=2184;RSQ=0.8573;THETA=0.0008;VT=SNP;AVGPOST=0.9991;AC=5;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0,-2.45,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.02,-1.32,-5 22 50578055 rs79922710 C G 100 PASS RSQ=0.9848;AA=C;LDAF=0.0042;AN=2184;THETA=0.0005;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0041;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.79,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.11,-0.65,-4.7 22 50578075 rs73185399 G A 100 PASS 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ATC A 42 PASS THETA=0.0002;ERATE=0.0023;AN=2184;AVGPOST=0.9952;VT=INDEL;RSQ=0.7524;AC=14;LDAF=0.008;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.8,-35 0|0:0.05:0,-0.3,-5.7 0|0:0:0,0,0 0|0:0:0,-0.3,-4.8 0|0:0:0,-0.6,-11.5 22 50582278 rs5845923 ACT A 652 PASS AN=2184;VT=INDEL;ERATE=0.003;AC=535;LDAF=0.2453;THETA=0.0013;AVGPOST=0.9925;RSQ=0.9846;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-1.8,-33.7 1|1:2:-7.3,-0.6,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-11.2 22 50582332 rs145637690 T G 100 PASS THETA=0.0009;AVGPOST=1;AA=T;AN=2184;AC=6;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9921;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0,-3.24,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582376 rs138262874 C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.42,-5 0|0:0:-0,-2.13,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582482 rs115059170 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9818;LDAF=0.0046;VT=SNP;AC=10;AVGPOST=0.9998;ERATE=0.0003;THETA=0.0003;AF=0.0046;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582550 rs2272836 C A 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.217;VT=SNP;AC=473;ERATE=0.0059;RSQ=0.9952;AVGPOST=0.9978;AF=0.22;ASN_AF=0.3;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.17 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582583 rs186827227 G A 100 PASS RSQ=0.8284;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582591 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0038;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582626 rs2272837 A G 100 PASS ERATE=0.0165;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9971;LDAF=0.3315;AC=724;RSQ=0.9951;AF=0.33;ASN_AF=0.6;AMR_AF=0.35;AFR_AF=0.16;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-0.66,-0.11 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582630 rs11704548 G A 100 PASS RSQ=0.9902;AC=73;LDAF=0.0337;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;THETA=0.0012;ERATE=0.0003;AF=0.03;AMR_AF=0.05;AFR_AF=0.002;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582643 rs142752424 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50582782 rs191589445 A G 100 PASS THETA=0.0065;RSQ=0.876;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-3.47,-5 0|0:0:-0,-3.4,-5 0|0:0:0,-5,-5 22 50582808 rs184907608 T C 100 PASS AA=T;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.8316;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-3.3,-5 0|0:0:-0.01,-1.9,-5 0|0:0:0,-5,-5 22 50582868 rs59650998 C A 100 PASS LDAF=0.0589;ERATE=0.0069;AA=C;AN=2184;AC=124;AVGPOST=0.9952;THETA=0.0005;VT=SNP;RSQ=0.966;SNPSOURCE=LOWCOV;AF=0.06;ASN_AF=0.02;AMR_AF=0.07;AFR_AF=0.05;EUR_AF=0.08 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.99,-5 22 50582878 rs35911313 CTG C 740 PASS LDAF=0.3917;RSQ=0.873;AN=2184;ERATE=0.0474;VT=INDEL;THETA=0.0012;AVGPOST=0.9112;AC=840;AF=0.38;ASN_AF=0.65;AMR_AF=0.47;AFR_AF=0.22;EUR_AF=0.25 GT:DS:GL 0|0:0:0,-1.2,-21.6 1|0:0.6:0,-0.9,-16.2 0|0:0.05:0,-0.9,-16.2 0|0:0.35:0,0,0 0|0:0.1:0,-0.6,-10.8 22 50582882 . GT G 1 PASS AC=253;THETA=0.0002;ERATE=0.0064;AN=2184;LDAF=0.1366;VT=INDEL;AVGPOST=0.8835;RSQ=0.6662;AF=0.12;ASN_AF=0.28;AMR_AF=0.17;AFR_AF=0.04;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-1.5,-23.1 0|0:0:0,-0.9,-14.4 0|0:0:0,-0.9,-14.4 0|0:0.25:0,0,0 0|0:0:0,-0.6,-9.6 22 50583021 rs73187209 T G 100 PASS RSQ=0.8387;AN=2184;AVGPOST=0.9234;AC=502;VT=SNP;LDAF=0.2432;ERATE=0.0321;THETA=0.0025;SNPSOURCE=LOWCOV;AA=t;AF=0.23;ASN_AF=0.12;AMR_AF=0.28;AFR_AF=0.12;EUR_AF=0.37 GT:DS:GL 1|1:1.65:-3.03,-0.46,-0.18 0|0:0.25:-0.17,-0.52,-1.77 0|1:1:-5,-0,-4.7 0|0:0.2:-0.04,-1.05,-5 0|0:0.05:-0.12,-0.63,-5 22 50583049 rs113464463 C T 100 PASS AA=C;LDAF=0.0058;AN=2184;VT=SNP;AC=10;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9958;THETA=0.0003;RSQ=0.7213;AF=0.0046;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.17,-0.52,-1.79 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.05,-0.93,-5 0|0:0:-0.2,-0.44,-2.6 22 50583050 rs181770835 G A 100 PASS 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AC=12;AVGPOST=0.9963;LDAF=0.0066;AN=2184;RSQ=0.7643;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;ASN_AF=0.02;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.22,-0.42,-1.83 0|0:0:-0.21,-0.43,-1.9 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.19,-0.45,-2.15 22 50583104 rs149408877 A G 100 PASS AA=G;AN=2184;LDAF=0.0136;ERATE=0.0009;VT=SNP;THETA=0.0033;AVGPOST=0.9922;AC=24;RSQ=0.7813;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.22,-0.42,-1.83 0|0:0:-0.22,-0.42,-1.76 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.19,-0.45,-2.15 22 50583136 rs138262 A G 100 PASS AVGPOST=0.9786;LDAF=0.1714;AN=2184;THETA=0.0005;VT=SNP;AA=A;ERATE=0.0019;SNPSOURCE=LOWCOV;RSQ=0.9446;AC=371;AF=0.17;ASN_AF=0.0035;AMR_AF=0.2;AFR_AF=0.07;EUR_AF=0.35 GT:DS:GL 1|1:2:-5,-1.06,-0.04 0|0:0:-0.48,-0.48,-0.48 0|1:0.95:-0.13,-0.6,-3.7 1|0:0.7:-0.11,-0.65,-3.8 0|0:0:-0.48,-0.48,-0.48 22 50583183 rs184910645 T G 100 PASS 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AVGPOST=0.8683;ERATE=0.0077;AA=T;AN=2184;AC=406;THETA=0.0005;LDAF=0.2077;VT=SNP;RSQ=0.6973;SNPSOURCE=LOWCOV;AF=0.19;ASN_AF=0.04;AMR_AF=0.22;AFR_AF=0.21;EUR_AF=0.26 GT:DS:GL 1|1:1.6:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 0|1:0.75:-0.48,-0.48,-0.48 0|0:0.1:-0.18,-0.48,-2.19 0|0:0.15:-0.48,-0.48,-0.48 22 50583246 rs138264 A G 100 PASS AC=1069;AA=G;AN=2184;AVGPOST=0.8039;ERATE=0.0088;VT=SNP;LDAF=0.4825;SNPSOURCE=LOWCOV;THETA=0.0024;RSQ=0.7225;AF=0.49;ASN_AF=0.35;AMR_AF=0.58;AFR_AF=0.47;EUR_AF=0.57 GT:DS:GL 1|1:1.9:-0.48,-0.48,-0.48 1|1:1.55:-0.48,-0.48,-0.48 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.19 0|0:0.05:-0.48,-0.48,-0.48 22 50583252 rs138265 T C 100 PASS AA=C;THETA=0.0004;AN=2184;LDAF=0.4827;VT=SNP;RSQ=0.6929;ERATE=0.0121;AVGPOST=0.7841;SNPSOURCE=LOWCOV;AC=1086;AF=0.5;ASN_AF=0.35;AMR_AF=0.59;AFR_AF=0.47;EUR_AF=0.59 GT:DS:GL 1|1:1.75:-0.48,-0.48,-0.48 1|1:1.3:-0.48,-0.48,-0.48 0|0:0.45:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.48,-0.48,-0.48 22 50583253 rs71316585 G A 100 PASS THETA=0.0015;LDAF=0.1189;AC=244;AA=G;AN=2184;VT=SNP;RSQ=0.755;ERATE=0.0019;SNPSOURCE=LOWCOV;AVGPOST=0.9287;AF=0.11;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.08;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.36,-0.41,-0.77 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.45:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50583257 rs71316586 G A 100 PASS LDAF=0.1144;AA=g;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0008;AVGPOST=0.9317;SNPSOURCE=LOWCOV;AC=238;RSQ=0.7646;AF=0.11;ASN_AF=0.13;AMR_AF=0.14;AFR_AF=0.1;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0.4:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.48,-0.48,-0.48 22 50583261 rs4838850 C T 100 PASS AA=T;AN=2184;ERATE=0.0136;VT=SNP;AC=806;LDAF=0.3737;RSQ=0.7277;SNPSOURCE=LOWCOV;THETA=0.0043;AVGPOST=0.8336;AF=0.37;ASN_AF=0.42;AMR_AF=0.47;AFR_AF=0.29;EUR_AF=0.33 GT:DS:GL 0|0:0.2:-0.11,-0.65,-4.4 1|1:1.65:-0.48,-0.48,-0.48 0|0:0.5:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50583271 rs180953224 A G 100 PASS THETA=0.0004;AN=2184;RSQ=0.5009;AVGPOST=0.9883;LDAF=0.0093;VT=SNP;ERATE=0.001;AA=A;AC=15;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.48,-0.48,-0.48 22 50583289 rs186204825 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.0031;AC=8;AVGPOST=0.9972;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8029;LDAF=0.0051;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.07,-0.83,-5 0|0:0.4:-0.19,-0.45,-2.18 0|0:0:-0.12,-0.61,-3.11 0|0:0:-0.06,-0.92,-5 0|0:0:-0.05,-0.96,-5 22 50583361 rs112256184 G A 100 PASS AC=105;THETA=0.0002;LDAF=0.0486;AA=G;AN=2184;RSQ=0.996;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.02,-1.31,-5 22 50583435 rs192022989 G C 100 PASS 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AVGPOST=0.9945;THETA=0.0004;AA=G;AN=2184;RSQ=0.9896;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=533;LDAF=0.2439;AF=0.24;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.08,-5 1|1:2:-2.89,-0.49,-0.17 0|0:0:-0.07,-0.82,-5 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.11,-0.65,-4.1 22 50583744 rs138266 C G 100 PASS ERATE=0.009;RSQ=0.7961;THETA=0.0004;LDAF=0.8867;AA=G;AN=2184;AVGPOST=0.9455;VT=SNP;SNPSOURCE=LOWCOV;AC=1974;AF=0.9;ASN_AF=0.91;AMR_AF=0.93;AFR_AF=0.91;EUR_AF=0.89 GT:DS:GL 1|1:2:-5,-2.69,-0 1|1:1.95:-0.48,-0.48,-0.48 1|1:2:-0.41,-0.45,-0.6 0|1:1.15:-5,-0.62,-0.12 0|0:0.5:-0.01,-1.72,-5 22 50583861 rs111970512 T C 100 PASS RSQ=0.9886;THETA=0.0002;AN=2184;AVGPOST=0.9997;VT=SNP;AC=24;SNPSOURCE=LOWCOV;LDAF=0.0111;ERATE=0.0003;AA=t;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.03,-1.18,-5 0|0:0:0,-5,-5 22 50583923 rs141444590 T A 100 PASS THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.8476;AA=t;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.08,-5 0|0:0:-0,-3.14,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50583968 rs150428804 A G 100 PASS AVGPOST=1;LDAF=0.0009;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584123 . T C 100 PASS LDAF=0.0009;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9499;ERATE=0.0003;AC=2;AVGPOST=0.9999;AA=t;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584130 rs55747387 G A 100 PASS ERATE=0.0004;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9913;THETA=0.001;AC=11;AVGPOST=0.9999;LDAF=0.005;AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584153 . C T 100 PASS AVGPOST=1;AN=2184;THETA=0.0008;VT=SNP;LDAF=0;AA=c;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584201 rs2272838 A C 100 PASS RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.2478;VT=SNP;AC=541;AVGPOST=0.9998;AA=a;ERATE=0.0003;THETA=0.0003;AF=0.25;ASN_AF=0.32;AMR_AF=0.36;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584248 rs2272839 C T 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0201;VT=SNP;AA=c;AC=44;ERATE=0.0003;RSQ=0.9989;THETA=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584261 rs12170772 C A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0001;VT=SNP;AA=c;AC=103;RSQ=1;ERATE=0.0003;LDAF=0.0475;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584262 rs182650671 G A 100 PASS RSQ=0.9892;LDAF=0.0041;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0027;AC=9;ERATE=0.0003;AVGPOST=0.9999;AF=0.0041;ASN_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584279 rs115111481 G C 100 PASS AVGPOST=1;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=41;ERATE=0.0003;RSQ=0.9989;LDAF=0.0188;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584288 rs187341896 C T 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0001;VT=SNP;AA=c;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584292 rs191335312 G A 100 PASS AVGPOST=1;LDAF=0.0009;AA=g;THETA=0.0004;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584295 rs183917151 C T 100 PASS THETA=0.0004;RSQ=0.876;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50584416 rs17013168 C T 100 PASS ERATE=0.0004;LDAF=0.0564;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;RSQ=0.9972;AA=c;AC=123;SNPSOURCE=LOWCOV;AF=0.06;AMR_AF=0.03;AFR_AF=0.23 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50584574 . G GGGAGGCCT 437 PASS ERATE=0.0005;AN=2184;VT=INDEL;AC=492;THETA=0.0006;LDAF=0.2185;AVGPOST=0.9679;RSQ=0.9309;AF=0.23;ASN_AF=0.29;AMR_AF=0.32;AFR_AF=0.11;EUR_AF=0.2 GT:DS:GL 0|0:0:0,-2.4,-49.6 1|1:2:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50584577 . A AGGCCTGGAGCCTG 1114 PASS ERATE=0.0021;RSQ=0.9202;AN=2184;VT=INDEL;LDAF=0.225;AVGPOST=0.9621;AC=503;THETA=0.0003;AF=0.23;ASN_AF=0.29;AMR_AF=0.33;AFR_AF=0.12;EUR_AF=0.21 GT:DS:GL 0|0:0:0,-2.4,-79.1 1|1:2:0,0,0 0|0:0:0,0,0 0|0:0.3:0,0,0 0|0:0:0,0,0 22 50584583 . G GGA 138 PASS ERATE=0.0101;AN=2184;AVGPOST=0.9157;LDAF=0.1809;VT=INDEL;THETA=0.0005;RSQ=0.7731;AC=379;AF=0.17;ASN_AF=0.23;AMR_AF=0.23;AFR_AF=0.1;EUR_AF=0.15 GT:DS:GL 0|0:0:0,-2.7,-41.3 1|1:1.8:0,0,0 0|0:0.15:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50584608 rs111385997 C CT 390 PASS AVGPOST=0.9939;AC=539;THETA=0.0004;AN=2184;VT=INDEL;LDAF=0.2478;ERATE=0.001;RSQ=0.9867;AF=0.25;ASN_AF=0.32;AMR_AF=0.35;AFR_AF=0.12;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-2.4,-33.6 1|1:2:0,0,0 0|0:0:0,0,0 0|0:0.05:0,-0.3,-4.2 0|0:0:0,0,0 22 50584676 rs34298991 G T 100 PASS ERATE=0.0005;THETA=0.0002;AA=g;AC=539;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.2471;SNPSOURCE=LOWCOV;RSQ=0.9951;AF=0.25;ASN_AF=0.32;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.03,-5 1|1:2:-5,-1.31,-0.02 0|0:0:-0.04,-1.1,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.43,-5 22 50584693 rs35470139 C T 100 PASS ERATE=0.0005;AC=539;THETA=0.0004;AN=2184;AVGPOST=0.9981;VT=SNP;AA=c;LDAF=0.2476;SNPSOURCE=LOWCOV;RSQ=0.9962;AF=0.25;ASN_AF=0.32;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.29,-5 1|1:2:-5,-0.33,-0.27 0|0:0:-0.2,-0.48,-1.42 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-2.67,-5 22 50584801 rs138267 G A 100 PASS ERATE=0.0036;RSQ=0.9672;AA=g;THETA=0.0004;AN=2184;VT=SNP;AC=646;AVGPOST=0.9809;SNPSOURCE=LOWCOV;LDAF=0.2972;AF=0.3;ASN_AF=0.2;AMR_AF=0.31;AFR_AF=0.16;EUR_AF=0.45 GT:DS:GL 1|1:2:-5,-2.09,-0 0|0:0:-0.11,-0.66,-2.61 1|0:1:-4.4,-0.04,-1.02 1|0:1:-5,-0.42,-0.21 0|0:0:-0.07,-0.85,-5 22 50584820 rs187751257 C A 100 PASS ERATE=0.0004;THETA=0.0002;LDAF=0.0187;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AVGPOST=0.995;AC=39;RSQ=0.9068;AF=0.02;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0.07,-0.8,-3.42 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.18,-0.47,-3.06 22 50584847 rs193121007 G C 100 PASS THETA=0.0002;RSQ=0.6008;AA=g;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0.04,-1.03,-4.7 0|0:0.05:-0.22,-0.46,-1.25 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-3.07 22 50585003 rs140993474 G T 100 PASS AA=g;AN=2184;LDAF=0.0018;THETA=0.0005;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;RSQ=0.7338;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0.02,-1.43,-5 0|0:0:-0.11,-0.66,-4.7 22 50585073 rs185084022 C T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;RSQ=0.6922;LDAF=0.0015;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AA=N;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.14,-0.57,-2.83 0|0:0:-0.05,-0.95,-5 0|0:0:-0.2,-0.45,-2.08 22 50585136 rs116251293 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0113;AC=24;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.9634;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.08,-0.8,-5 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.12,-0.63,-3.92 0|0:0:-0.19,-0.46,-2.15 22 50585174 rs9628265 T G 100 PASS THETA=0.0004;RSQ=0.93;LDAF=0.3024;AN=2184;ERATE=0.0081;VT=SNP;AVGPOST=0.9585;SNPSOURCE=LOWCOV;AC=642;AA=t;AF=0.29;ASN_AF=0.33;AMR_AF=0.38;AFR_AF=0.23;EUR_AF=0.27 GT:DS:GL 0|0:0:-0.05,-0.94,-5 1|1:2:-5,-2.72,-0 0|0:0:-0.07,-0.82,-4.22 0|0:0.25:-0.06,-0.89,-5 0|0:0:-0.02,-1.34,-5 22 50585233 rs149461660 G A 100 PASS AVGPOST=0.9985;AA=g;AN=2184;VT=SNP;LDAF=0.0026;THETA=0.0006;RSQ=0.764;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.66,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.01,-1.77,-5 22 50585307 rs77691680 A G 100 PASS AN=2184;RSQ=0.7878;VT=SNP;AVGPOST=0.9993;THETA=0.0012;LDAF=0.0011;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0,-3.07,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.11,-0.64,-4.1 22 50585386 rs190015304 C T 100 PASS AN=2184;THETA=0.0005;VT=SNP;AA=c;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.6462;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:-0.13,-0.6,-5 0|0:0:-0,-2.66,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.91,-5 22 50585414 rs182135834 G A 100 PASS AC=7;RSQ=0.8518;THETA=0.0026;LDAF=0.0033;AA=g;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;ASN_AF=0.01;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.53,-5 0|0:0:-0,-2.69,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.1,-0.69,-4.4 0|0:0:-0.01,-1.89,-5 22 50585442 rs4838811 C G 100 PASS ERATE=0.0005;AA=g;AN=2184;AC=560;RSQ=0.9976;AVGPOST=0.999;VT=SNP;LDAF=0.2564;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.26;ASN_AF=0.32;AMR_AF=0.35;AFR_AF=0.15;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.16,-5 1|1:2:-5,-4.4,-0 0|0:0:-0,-3.15,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.02,-1.41,-5 22 50585467 . TTGA T 268 PASS ERATE=0.0004;AVGPOST=0.9986;RSQ=0.8772;AN=2184;VT=INDEL;THETA=0.0005;AC=10;LDAF=0.0051;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-0.6,-13.6 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-6.8 0|0:0:0,0,0 22 50585505 rs143850585 C T 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=c;RSQ=1;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-2.44,-5 22 50585528 rs5771080 G A 100 PASS AA=g;AN=2184;AC=364;RSQ=0.9876;VT=SNP;LDAF=0.1673;ERATE=0.0016;AVGPOST=0.9956;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.17;ASN_AF=0.33;AMR_AF=0.13;AFR_AF=0.02;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-3.59,-5 0|1:1:-3.14,-0,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0,-2.2,-5 22 50585595 rs4838851 G A 100 PASS THETA=0.0004;AN=2184;ERATE=0.0024;LDAF=0.2459;VT=SNP;AC=536;RSQ=0.9878;SNPSOURCE=LOWCOV;AA=a;AVGPOST=0.9941;AF=0.25;ASN_AF=0.32;AMR_AF=0.36;AFR_AF=0.1;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.54,-5 1|1:2:-5,-5,0 0|0:0:-0,-4.4,-5 0|0:0:-0.09,-0.73,-4.7 0|0:0:-0.06,-0.89,-5 22 50585598 rs183973731 G T 100 PASS ERATE=0.0005;LDAF=0.0027;AA=g;AN=2184;VT=SNP;AC=5;SNPSOURCE=LOWCOV;RSQ=0.7511;AVGPOST=0.9984;THETA=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.55,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.09,-0.75,-5 0|0:0:-0.06,-0.9,-5 22 50585626 rs4838852 A G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9166;ERATE=0.0353;SNPSOURCE=LOWCOV;AC=1127;LDAF=0.5087;RSQ=0.8871;AA=N;AF=0.52;ASN_AF=0.35;AMR_AF=0.62;AFR_AF=0.61;EUR_AF=0.53 GT:DS:GL 1|1:1.95:-5,-1.46,-0.02 1|1:1.95:-5,-1.82,-0.01 0|0:0:0,-5,-5 0|1:0.6:-0.06,-0.87,-5 0|1:0.95:-2.07,-0,-5 22 50585663 rs56281345 C G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AC=68;RSQ=0.7798;ERATE=0.0008;LDAF=0.035;SNPSOURCE=LOWCOV;AVGPOST=0.9788;AA=N;AF=0.03;ASN_AF=0.0035;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.19,-0.46,-2.25 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.92,-3.85 0|0:0.5:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.78,-5 22 50586063 rs13058004 C G 100 PASS THETA=0.0002;AA=g;AN=2184;AVGPOST=0.973;LDAF=0.2774;VT=SNP;RSQ=0.9532;ERATE=0.0055;AC=600;SNPSOURCE=LOWCOV;AF=0.27;ASN_AF=0.44;AMR_AF=0.35;AFR_AF=0.07;EUR_AF=0.25 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 1|1:1.9:-5,-1.28,-0.02 0|0:0:-0.13,-0.61,-2.22 0|0:0.15:-0.03,-1.2,-5 0|0:0:-0.2,-0.45,-2.08 22 50586102 . CA C 168 PASS ERATE=0.0005;AC=28;AN=2184;THETA=0.0031;VT=INDEL;AVGPOST=0.9988;LDAF=0.0135;RSQ=0.9614;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-0.6,-9.6 0|0:0:0,-0.3,-4.8 0|0:0:0,-0.6,-9.6 0|0:0:0,-0.6,-9.6 0|0:0:0,-1.2,-19.2 22 50586415 rs760751 G C 100 PASS ERATE=0.0005;AC=542;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;LDAF=0.2489;RSQ=0.9952;SNPSOURCE=LOWCOV;AF=0.25;ASN_AF=0.32;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.02,-1.46,-5 1|1:2:-5,-1.14,-0.03 0|0:0:-0.03,-1.24,-5 0|0:0:-0.09,-0.75,-5 0|0:0:-0.07,-0.84,-5 22 50586420 rs117989126 C T 100 PASS LDAF=0.0206;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;AC=44;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9784;THETA=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.4,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.08,-0.79,-4 0|0:0:-0.04,-1.09,-5 0|0:0:-0.12,-0.63,-3.92 22 50586426 rs146691772 C T 100 PASS 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C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50588026 rs138373368 A G 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.8803;AA=A;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50588131 rs138271 C T 100 PASS AA=C;ERATE=0.0149;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0013;RSQ=0.9903;AVGPOST=0.9955;AC=355;LDAF=0.1619;AF=0.16;ASN_AF=0.01;AMR_AF=0.18;AFR_AF=0.07;EUR_AF=0.33 GT:DS:GL 1|1:2:-5,-2.97,-0 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.7,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50588153 rs2272840 G A 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.2464;VT=SNP;RSQ=0.9998;AC=538;ERATE=0.0003;AVGPOST=0.9999;AF=0.25;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0,-4,-5 1|1:2:-5,-5,0 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50588163 . T C 100 PASS LDAF=0.0009;THETA=0.0002;RSQ=0.9525;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50588184 rs144016647 C T 100 PASS LDAF=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.8551;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50588287 rs187653378 G T 100 PASS AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7787;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.48,-5 0|0:0:0,-5,-5 22 50588313 rs12484907 G A 100 PASS AA=G;AN=2184;AC=149;THETA=0.0005;VT=SNP;AVGPOST=0.9991;RSQ=0.9912;SNPSOURCE=LOWCOV;LDAF=0.0684;ERATE=0.0003;AF=0.07;ASN_AF=0.12;AMR_AF=0.13;AFR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-2,-5 1|0:1:-5,0,-5 0|0:0:-0,-4.7,-5 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RSQ=0.715;AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-3.59,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.06,-0.88,-5 22 50588708 rs2294395 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9989;LDAF=0.2468;SNPSOURCE=LOWCOV;AC=538;RSQ=0.9974;AF=0.25;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.05,-0.95,-5 1|1:2:-5,-0.72,-0.09 0|0:0:-0.07,-0.82,-5 0|0:0:-0.01,-1.91,-5 0|0:0:-0.04,-1.09,-5 22 50588713 rs182154379 G T 100 PASS AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;RSQ=0.4145;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.07,-0.83,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.04,-1.08,-5 22 50588727 rs139358871 C T 100 PASS AA=C;THETA=0.0004;AN=2184;LDAF=0.004;AC=8;VT=SNP;RSQ=0.91;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.12,-0.61,-3.13 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.01,-1.66,-5 0|0:0:-0.04,-1.07,-5 22 50588776 rs141550141 C T 100 PASS ERATE=0.0004;LDAF=0.0013;AA=C;AN=2184;VT=SNP;THETA=0.0028;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.6509;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.12,-5 0|0:0:-0.08,-0.8,-4.7 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.06,-0.88,-5 22 50589036 rs115890717 C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8528;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=3;AF=0.0014;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.08,-0.76,-3.7 0|0:0:-0.03,-1.23,-5 0|0:0:-0.03,-1.16,-5 22 50589058 rs117372572 G A 100 PASS ERATE=0.0004;RSQ=0.8539;LDAF=0.0016;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.82,-5 0|0:0:-0.04,-1.01,-4.4 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.54,-5 22 50589121 rs117743785 G A 100 PASS AVGPOST=1;LDAF=0.0133;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=29;VT=SNP;ERATE=0.0003;RSQ=0.9984;AF=0.01;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.85,-5 1|0:1:-5,-0,-4.7 0|0:0:-0,-2.89,-5 0|0:0:-0.01,-1.91,-5 0|0:0:-0,-3.74,-5 22 50589161 rs116255337 C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0031;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 22 50589174 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50589196 rs2294396 C A 100 PASS LDAF=0.149;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=.;AC=325;RSQ=0.9997;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.15;ASN_AF=0.22;AMR_AF=0.16;AFR_AF=0.03;EUR_AF=0.17 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50589217 . C T 100 PASS LDAF=0.0004;THETA=0.0004;AN=2184;RSQ=0.8999;VT=SNP;AA=.;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50589355 . G A 100 PASS LDAF=0.0013;THETA=0.0002;RSQ=0.9672;AN=2184;VT=SNP;AA=.;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;AVGPOST=0.9999;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50589458 rs138410975 C G 100 PASS AVGPOST=0.9994;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;RSQ=0.8935;ERATE=0.0003;AC=3;THETA=0.0003;LDAF=0.0017;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.15,-0.54,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.04,-1.03,-5 0|0:0:0,-5,-5 22 50589572 rs149240375 A G 100 PASS THETA=0.0002;AN=2184;RSQ=0.6883;VT=SNP;AA=.;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.01,-1.93,-5 22 50589576 rs79304 A G 100 PASS ERATE=0.0004;LDAF=0.6651;THETA=0.0002;AVGPOST=0.9983;RSQ=0.9969;AN=2184;AC=1453;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AF=0.67;ASN_AF=0.58;AMR_AF=0.76;AFR_AF=0.55;EUR_AF=0.76 GT:DS:GL 1|1:2:-5,-1.76,-0.01 1|1:2:-5,-2.19,-0 1|0:1:-0.66,-0.11,-5 1|0:1:-1.71,-0.01,-5 0|0:0:-0,-2.68,-5 22 50589629 . TCTC T 307 PASS ERATE=0.0004;RSQ=0.9831;AN=2184;VT=INDEL;AVGPOST=0.9993;AC=44;LDAF=0.0204;THETA=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.2,-27.2 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-6.8 0|0:0:0,0,0 22 50589756 rs187594586 T C 100 PASS AC=7;ERATE=0.0004;THETA=0.0002;RSQ=0.8677;AN=2184;LDAF=0.0037;VT=SNP;AA=.;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.18,-0.46,-2.43 0|0:0:-0.06,-0.91,-5 22 50589864 rs193213104 A G 100 PASS THETA=0.0002;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;AA=.;RSQ=0.6423;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.57,-5 22 50589990 rs146221279 G A 100 PASS ERATE=0.0004;THETA=0.0002;LDAF=0.0016;AN=2184;AVGPOST=0.9979;RSQ=0.511;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.08,-0.8,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0.02,-1.4,-5 0|0:0:-0.09,-0.71,-5 22 50590007 rs34724782 G GT 597 PASS RSQ=0.9937;LDAF=0.249;AN=2184;VT=INDEL;AC=543;AVGPOST=0.9973;ERATE=0.0007;THETA=0.0003;AF=0.25;ASN_AF=0.31;AMR_AF=0.36;AFR_AF=0.12;EUR_AF=0.23 GT:DS:GL 0|0:0:0,-0.9,-12.6 1|1:2:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0.05:0,0,0 22 50590037 rs4838853 C T 100 PASS ERATE=0.0004;AN=2184;LDAF=0.1362;VT=SNP;AA=.;AVGPOST=0.9969;SNPSOURCE=LOWCOV;AC=299;RSQ=0.9893;THETA=0.0003;AF=0.14;ASN_AF=0.19;AMR_AF=0.18;AFR_AF=0.04;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|1:1:-5,-0.79,-0.08 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.19,-0.45,-2.28 0|0:0:-0.18,-0.47,-3.07 22 50590112 rs183823449 T C 100 PASS ERATE=0.0005;RSQ=0.7081;THETA=0.0002;AN=2184;AC=8;LDAF=0.0043;VT=SNP;AA=.;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.0037;ASN_AF=0.0035;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.2,-0.48,-1.46 0|0:0:-0.12,-0.62,-3.17 0|0:0:-0.06,-0.87,-5 0|0:0:-0.48,-0.48,-0.48 22 50590150 rs139165566 G A 100 PASS ERATE=0.0005;AN=2184;VT=SNP;AA=.;THETA=0.0027;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;RSQ=0.5921;AVGPOST=0.9982;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 0|0:0:-0.2,-0.44,-2.03 0|0:0:-0.13,-0.6,-2.97 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 22 50590192 rs116761794 G A 100 PASS AC=12;THETA=0.0002;AN=2184;RSQ=0.8151;VT=SNP;AA=.;LDAF=0.0059;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.2,-5 0|0:0:-0.19,-0.46,-2.15 22 50590286 rs6010145 G A 100 PASS AN=2184;LDAF=0.248;THETA=0.0005;VT=SNP;AA=.;AC=541;AVGPOST=0.9991;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9979;AF=0.25;ASN_AF=0.31;AMR_AF=0.36;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.06,-0.92,-5 1|1:2:-5,-1.3,-0.02 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.06,-0.89,-5 0|0:0:-0.02,-1.32,-5 22 50590319 rs144103975 C A 100 PASS THETA=0.0002;RSQ=0.7922;AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.02,-1.27,-5 0|0:0:-0.12,-0.62,-4.1 0|0:0:-0.06,-0.87,-5 22 50590331 rs9628292 C A 100 PASS ERATE=0.0004;AVGPOST=0.9983;RSQ=0.9843;LDAF=0.0468;AN=2184;AC=100;VT=SNP;AA=.;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.04 GT:DS:GL 0|0:0.05:-0.29,-0.38,-1.17 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.04,-1.09,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.35,-5 22 50590374 rs145986014 G A 100 PASS THETA=0.0009;ERATE=0.0004;LDAF=0.0013;RSQ=0.7265;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=2;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.08,-0.79,-4.7 0|0:0:-0.02,-1.27,-5 0|0:0:-0.11,-0.64,-4.1 22 50590393 rs148664170 C T 100 PASS ERATE=0.0004;AN=2184;THETA=0.0001;VT=SNP;AA=.;AC=44;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.0207;RSQ=0.9798;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.13,-0.59,-5 0|0:0:-0.07,-0.86,-5 22 50590471 rs738335 G A 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;AVGPOST=0.9996;VT=SNP;AA=.;SNPSOURCE=LOWCOV;RSQ=0.9985;AC=318;LDAF=0.1459;AF=0.15;ASN_AF=0.22;AMR_AF=0.16;AFR_AF=0.01;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0,-2.49,-5 1|0:1:-5,0,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.01,-1.87,-5 22 50590505 rs6010146 A G 100 PASS ERATE=0.0004;AN=2184;LDAF=0.2477;VT=SNP;AA=.;AC=541;SNPSOURCE=LOWCOV;RSQ=0.9971;AVGPOST=0.9987;THETA=0.0003;AF=0.25;ASN_AF=0.31;AMR_AF=0.36;AFR_AF=0.11;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.21,-5 1|1:2:-5,-1.21,-0.03 0|0:0:-0,-3.11,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.01,-1.88,-5 22 50590543 rs738336 C T 100 PASS ERATE=0.0005;AN=2184;VT=SNP;AA=.;LDAF=0.1494;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.9967;AC=326;THETA=0.0003;AF=0.15;ASN_AF=0.22;AMR_AF=0.16;AFR_AF=0.03;EUR_AF=0.17 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0,-3.85,-5 1|0:1:-4.4,-0,-2.51 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.81,-5 22 50590566 rs71668513 AACAG A 620 PASS AC=293;AN=2184;VT=INDEL;LDAF=0.134;RSQ=0.991;ERATE=0.0006;AVGPOST=0.9974;THETA=0.0003;AF=0.13;ASN_AF=0.19;AMR_AF=0.18;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-2.7,-72.1 0|1:1:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-8 0|0:0:0,0,0 22 50590581 rs75737255 A G 100 PASS AC=12;RSQ=0.9687;AN=2184;AVGPOST=0.9996;VT=SNP;AA=.;THETA=0.0006;LDAF=0.0056;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0,-2.85,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-2.31,-5 0|0:0:-0.02,-1.33,-5 22 50590634 rs9628293 G A 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;LDAF=0.0471;AC=101;RSQ=0.9912;SNPSOURCE=LOWCOV;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.28,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0,-2.6,-5 22 50590676 rs189240495 C G 100 PASS ERATE=0.0004;AVGPOST=0.9985;AN=2184;VT=SNP;AA=.;RSQ=0.4684;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.06,-0.87,-5 22 50590724 rs117051591 G A 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;AVGPOST=0.9996;VT=SNP;AA=.;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;RSQ=0.8272;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.09,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.17,-0.5,-2.82 0|0:0:-0.04,-1.11,-5 22 50590737 rs115703540 C T 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=.;RSQ=0.9617;LDAF=0.0254;SNPSOURCE=LOWCOV;AC=53;AVGPOST=0.9974;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.18,-0.48,-2.17 0|0:0:-0.04,-1.07,-5 22 50590774 rs192033696 G A 100 PASS THETA=0.0002;AN=2184;VT=SNP;AA=.;RSQ=0.4743;AVGPOST=0.9991;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0.05:-0.96,-0.05,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-3.21,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.83,-5 22 50590889 rs78910978 A G 100 PASS THETA=0.0002;AN=2184;RSQ=0.9641;AVGPOST=0.9997;LDAF=0.0043;VT=SNP;AA=.;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.02,-1.35,-5 22 50590965 rs184393729 T C 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7732;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.9,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.1,-0.67,-5 22 50591003 rs138272 G T 100 PASS ERATE=0.0004;AVGPOST=0.9986;THETA=0.0002;AC=1287;AN=2184;VT=SNP;AA=.;RSQ=0.9973;SNPSOURCE=LOWCOV;LDAF=0.5888;AF=0.59;ASN_AF=0.58;AMR_AF=0.74;AFR_AF=0.3;EUR_AF=0.72 GT:DS:GL 1|1:2:-5,-2.04,-0 1|1:2:-5,-0.65,-0.11 1|0:1:-0.21,-0.47,-1.35 1|0:1:-4.22,-0,-3.3 0|0:0:-0.18,-0.47,-3.08 22 50591134 rs73187217 C T 100 PASS ERATE=0.0004;LDAF=0.0036;THETA=0.0002;AN=2184;RSQ=0.7266;VT=SNP;AA=.;AVGPOST=0.9971;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.19,-0.45,-2.1 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.96,-5 22 50591162 rs151218332 C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;THETA=0.0004;AN=2184;VT=SNP;AA=.;RSQ=0.8178;LDAF=0.0029;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.61,-3.15 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.58,-5 22 50591210 rs140460814 G A 100 PASS 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ERATE=0.0004;AN=2184;VT=SNP;AA=.;RSQ=0.4853;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AVGPOST=0.9982;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.04,-1.11,-5 22 50593893 rs142507628 T C 100 PASS AVGPOST=0.9994;AN=2184;VT=SNP;AA=.;RSQ=0.8731;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;THETA=0.0003;AF=0.0018;ASN_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.89,-5 22 50593949 rs145967240 G A 100 PASS ERATE=0.0005;THETA=0.0002;AN=2184;VT=SNP;AA=.;AVGPOST=0.9969;RSQ=0.526;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.0035;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.09,-0.73,-2.9 0|0:0:-0.03,-1.18,-5 0|0:0:-0.03,-1.11,-5 22 50594024 rs113355881 A G 100 PASS ERATE=0.0005;RSQ=0.9882;AVGPOST=0.9986;THETA=0.0002;AN=2184;VT=SNP;AA=.;AC=103;SNPSOURCE=LOWCOV;LDAF=0.0481;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.04,-1.09,-5 22 50594112 rs182711603 C T 100 PASS RSQ=0.3984;THETA=0.0004;AN=2184;AVGPOST=0.9962;VT=SNP;AA=.;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.22,-0.46,-1.32 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.44,-5 0|0:0:-0.12,-0.63,-4.7 22 50594199 rs139588421 C A 100 PASS AC=12;THETA=0.0002;AN=2184;VT=SNP;AA=.;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.007;RSQ=0.7517;AVGPOST=0.9958;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.06,-0.9,-5 0|0:0:-0.18,-0.46,-2.99 22 50594339 rs62239291 T G 100 PASS 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ERATE=0.0004;AN=2184;RSQ=0.4484;THETA=0.0005;VT=SNP;AA=.;AVGPOST=0.998;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.12,-0.62,-3.22 0|0:0:-0,-2.91,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.46,-2.16 22 50594692 rs188644819 G T 100 PASS ERATE=0.0005;AN=2184;LDAF=0.0015;VT=SNP;AA=.;AVGPOST=0.998;RSQ=0.4014;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.07,-0.82,-5 0|0:0.05:-0.22,-0.42,-1.79 0|0:0:-0.2,-0.45,-2.2 0|0:0:-0.18,-0.46,-3 22 50594772 rs28825717 T G 100 PASS ERATE=0.0005;LDAF=0.0486;AN=2184;RSQ=0.9796;THETA=0.0005;VT=SNP;AA=.;AVGPOST=0.9976;AC=103;SNPSOURCE=LOWCOV;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.94,-5 0|0:0:-0.48,-0.48,-0.48 22 50594835 rs6010148 A G 100 PASS ERATE=0.0013;RSQ=0.9881;AN=2184;VT=SNP;AA=.;AVGPOST=0.9923;AC=1255;SNPSOURCE=LOWCOV;LDAF=0.5751;THETA=0.0003;AF=0.57;ASN_AF=0.46;AMR_AF=0.62;AFR_AF=0.47;EUR_AF=0.71 GT:DS:GL 1|1:2:-5,-0.89,-0.06 0|1:1:-0.48,-0.48,-0.48 1|0:1.05:-0.19,-0.45,-2.18 1|0:1:-4.7,-0.61,-0.12 0|0:0.1:-0.48,-0.48,-0.48 22 50594979 rs118079533 C T 100 PASS AVGPOST=0.9977;AN=2184;LDAF=0.0205;VT=SNP;AA=.;AC=44;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9634;THETA=0.0003;AF=0.02;ASN_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-3.92,-5 22 50594981 rs192595187 C A 100 PASS ERATE=0.0005;THETA=0.0002;AN=2184;LDAF=0.001;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;RSQ=0.7829;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-3.66,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-3.92,-5 22 50594997 rs76342860 C G 100 PASS THETA=0.0002;RSQ=0.6463;AVGPOST=0.9994;AN=2184;VT=SNP;AA=.;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.9,-5 22 50595011 rs182723158 G A 100 PASS RSQ=0.8692;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;LDAF=0.0008;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-3.17,-5 0|0:0:-0.01,-1.83,-5 22 50595069 rs114400858 C T 100 PASS LDAF=0.0041;AN=2184;VT=SNP;AA=.;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9841;AVGPOST=0.9999;THETA=0.0003;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-2,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-3.62,-5 22 50595155 rs148472820 G T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=.;RSQ=0.5043;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.3,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.04,-1.09,-5 22 50595182 rs9617108 T A 100 PASS THETA=0.0002;AN=2184;AC=290;RSQ=0.9993;VT=SNP;AA=.;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.1326;AF=0.13;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-2.38,-5 0|1:1:-5,-0,-2.59 0|0:0:-0.04,-1.09,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.04,-1.05,-5 22 50595256 rs4838856 C T 100 PASS LDAF=0.1029;THETA=0.0002;AN=2184;AC=225;AVGPOST=0.9996;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.998;AF=0.1;ASN_AF=0.12;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.26,-5 1|0:1:-3.05,-0.49,-0.17 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-3.1,-5 0|0:0:-0,-4.22,-5 22 50595366 rs58942095 G C 100 PASS AVGPOST=0.9994;THETA=0.0004;AN=2184;LDAF=0.1559;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.998;AC=340;AF=0.16;ASN_AF=0.22;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.19 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-3.11,-5 1|0:1:-5,0,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.6,-5 22 50595387 rs187404143 A G 100 PASS ERATE=0.0004;LDAF=0.0013;AN=2184;VT=SNP;AA=.;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.7221;THETA=0.0007;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.4,-5 0|0:0:-0,-2.93,-5 0|0:0:-0,-2.91,-5 22 50595411 rs145355175 G A 100 PASS AC=7;ERATE=0.0004;LDAF=0.0033;THETA=0.0002;AN=2184;VT=SNP;AA=.;AVGPOST=0.9998;RSQ=0.9734;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.38,-5 0|0:0:-0,-3.85,-5 22 50595435 rs8135747 C T 100 PASS RSQ=0.9963;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;AA=.;LDAF=0.0402;AC=87;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.04;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-3.05,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0,-3.04,-5 0|0:0:-0,-2.11,-5 22 50595453 rs147655154 C T 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;VT=SNP;AA=.;AC=44;SNPSOURCE=LOWCOV;RSQ=0.9883;AVGPOST=0.9995;LDAF=0.0203;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.46,-2.77 0|0:0:-0,-2.06,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.88,-5 0|0:0:-0,-2.31,-5 22 50595510 rs77854221 T C 100 PASS AC=12;ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=.;AVGPOST=0.9998;LDAF=0.0056;SNPSOURCE=LOWCOV;RSQ=0.9804;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2.69,-5 0|0:0:-0,-2.39,-5 0|0:0:-0,-2.85,-5 22 50595619 rs79303359 G T 100 PASS THETA=0.0002;AN=2184;VT=SNP;AA=.;RSQ=0.8297;LDAF=0.0028;AC=5;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-3.06,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-2.93,-5 22 50595622 rs10427578 C T 100 PASS LDAF=0.1718;THETA=0.0002;AN=2184;VT=SNP;AA=.;ERATE=0.0017;AC=373;SNPSOURCE=LOWCOV;RSQ=0.9854;AVGPOST=0.9941;AF=0.17;ASN_AF=0.33;AMR_AF=0.13;AFR_AF=0.06;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.01,-1.7,-5 0|1:1:-5,0,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.3,-5 22 50595641 rs5771193 T G 100 PASS ERATE=0.0004;RSQ=0.9966;THETA=0.0004;AN=2184;AC=382;VT=SNP;AA=.;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.1753;AF=0.17;ASN_AF=0.22;AMR_AF=0.17;AFR_AF=0.13;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-3.38,-5 1|0:0.95:-0.02,-1.34,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.11,-5 22 50595699 rs35033752 TC T 667 PASS ERATE=0.0005;THETA=0.0002;AN=2184;RSQ=0.9927;AVGPOST=0.9981;VT=INDEL;AC=292;LDAF=0.1341;AF=0.13;ASN_AF=0.19;AMR_AF=0.18;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-1.5,-19.7 0|1:1:-5.5,0,-3 0|0:0:0,-0.4,-18.1 0|0:0:0,-1.5,-19.7 0|0:0:0,-0.6,-7.9 22 50595703 rs192271533 C A 100 PASS ERATE=0.0004;AN=2184;AC=6;THETA=0.0005;VT=SNP;AA=.;SNPSOURCE=LOWCOV;RSQ=0.9078;LDAF=0.0031;AVGPOST=0.9992;AF=0.0027;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.91,-5 22 50595730 rs142340229 T C 100 PASS THETA=0.0002;AN=2184;VT=SNP;AA=.;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-2.95,-5 0|0:0:-0,-3.44,-5 22 50595742 rs184758367 G A 100 PASS AN=2184;AVGPOST=0.9997;VT=SNP;AA=.;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.18,-5 0|0:0:-0,-2.23,-5 0|0:0:-0,-2.85,-5 0|0:0:-0,-3.38,-5 22 50595837 rs144762236 A T 100 PASS AN=2184;AVGPOST=0.9979;VT=SNP;AA=.;THETA=0.0011;ERATE=0.0008;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=3;RSQ=0.6267;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.04,-1.09,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.97,-5 22 50595842 rs5771086 T C 100 PASS ERATE=0.0005;THETA=0.0002;RSQ=0.9959;AN=2184;AVGPOST=0.9979;LDAF=0.7197;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1572;AF=0.72;ASN_AF=0.58;AMR_AF=0.79;AFR_AF=0.79;EUR_AF=0.74 GT:DS:GL 1|1:2:-5,-0.67,-0.11 1|1:2:-2.97,-0.48,-0.18 1|0:1:-5,0,-5 1|0:1:-3.74,-0,-5 0|0:0:-0,-2.42,-5 22 50595913 rs57262148 G A 100 PASS THETA=0.0002;RSQ=0.9996;AN=2184;AC=290;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.1325;AVGPOST=0.9999;AF=0.13;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|1:1:-5,-0,-4.7 0|0:0:-0,-2.65,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.01,-1.54,-5 22 50596054 rs13057433 T G 100 PASS ERATE=0.0005;AN=2184;THETA=0.0005;VT=SNP;AA=.;AC=291;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.9967;LDAF=0.1333;AF=0.13;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-2.07,-5 0|1:1:-5,0,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.07,-0.86,-5 22 50596105 rs76682367 G A 100 PASS AC=47;AN=2184;RSQ=0.9811;THETA=0.0005;VT=SNP;AA=.;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0225;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.36,-5 0|1:1:-5,-0,-4.22 1|1:2:-5,-3.49,-0 22 50596267 rs13054483 C G 100 PASS LDAF=0.1335;AN=2184;AVGPOST=0.9997;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=292;ERATE=0.0003;RSQ=0.9989;THETA=0.0003;AF=0.13;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-4,-5 0|1:1:-5,0,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-3.42,-5 22 50596276 rs112833168 G A 100 PASS RSQ=0.9728;THETA=0.0014;AN=2184;VT=SNP;AA=.;AVGPOST=0.9991;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=25;LDAF=0.0115;AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-3.12,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-3.04,-5 22 50596318 rs71318808 C CATT 748 PASS AC=297;RSQ=0.9761;AN=2184;LDAF=0.1366;VT=INDEL;ERATE=0.0006;AVGPOST=0.9926;THETA=0.0003;AF=0.14;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.15 GT:DS:GL 0|0:0:0,-1.8,-27.9 0|1:1:0,0,0 0|0:0:0,0,0 0|1:0.7:0,-0.3,-5 0|1:0.7:0,0,0 22 50596409 rs189965434 C T 100 PASS RSQ=0.931;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;THETA=0.0003;LDAF=0.0008;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50596612 rs151269819 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=.;LDAF=0.0019;RSQ=0.9618;AVGPOST=0.9998;AC=4;ERATE=0.0003;THETA=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50596651 rs192261959 G T 100 PASS ERATE=0.0005;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.7206;VT=SNP;AA=.;LDAF=0.0007;AC=1;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.91,-5 0|0:0:-0.01,-1.93,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50596655 rs140564205 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=16;THETA=0.0005;AVGPOST=0.9996;VT=SNP;AA=.;RSQ=0.981;ERATE=0.0003;LDAF=0.0075;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.01,-1.85,-5 0|1:1:-5,0,-5 0|1:1:-5,0,-5 22 50596763 rs114396996 G A 100 PASS RSQ=0.9886;AN=2184;VT=SNP;AA=.;AVGPOST=0.9998;LDAF=0.0097;SNPSOURCE=LOWCOV;AC=21;THETA=0.0007;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-4.7,-5 22 50596798 rs184530390 A G 100 PASS LDAF=0.0027;THETA=0.0002;AN=2184;AC=6;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9244;AVGPOST=0.9995;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.32,-5 0|0:0:-0,-3.36,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-4.1,-5 22 50596803 rs73893128 C A 100 PASS AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;LDAF=0.0096;AC=21;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;RSQ=0.9962;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.8,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.02,-1.36,-5 0|0:0:-0,-3.85,-5 22 50596911 rs17013173 T C 100 PASS AN=2184;VT=SNP;AA=.;AVGPOST=0.9991;LDAF=0.0189;RSQ=0.9835;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AC=42;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-2.85,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.6,-5 0|0:0:-0.01,-1.88,-5 22 50596984 rs189347010 T A 100 PASS THETA=0.0002;AN=2184;VT=SNP;AA=.;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8513;AVGPOST=0.9992;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.59,-5 0|0:0:-0.05,-0.92,-5 0|0:0:-0.01,-1.6,-5 22 50597037 rs181924406 G A 100 PASS ERATE=0.0005;THETA=0.0002;AN=2184;LDAF=0.0018;VT=SNP;AA=.;RSQ=0.4354;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.08,-0.75,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.85,-5 22 50597135 rs79598723 C T 100 PASS ERATE=0.0004;AN=2184;LDAF=0.001;VT=SNP;AA=.;RSQ=0.7877;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.46,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.84,-5 22 50597264 rs150447838 G A 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;AA=.;RSQ=0.8923;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-2.96,-5 22 50597274 rs185921944 T C 100 PASS LDAF=0.0021;THETA=0.0002;AVGPOST=0.9994;AN=2184;VT=SNP;AA=.;RSQ=0.9152;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-3.62,-5 0|0:0.05:-0.01,-1.68,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.41,-5 22 50597329 rs189034758 C T 100 PASS ERATE=0.0005;THETA=0.0002;RSQ=0.6431;AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.49,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-2.08,-5 22 50597466 rs73187226 C T 100 PASS AC=316;ERATE=0.0004;THETA=0.0002;AN=2184;VT=SNP;AA=.;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.9971;LDAF=0.1444;AF=0.14;ASN_AF=0.0035;AMR_AF=0.17;AFR_AF=0.06;EUR_AF=0.29 GT:DS:GL 1|1:2:-5,-1.69,-0.01 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.12,-0.63,-4 1|0:0.95:-0.02,-1.38,-5 0|0:0:-0.11,-0.64,-4.1 22 50597545 rs760753 A G 100 PASS ERATE=0.0004;AN=2184;AC=1994;RSQ=0.9954;VT=SNP;AA=.;LDAF=0.9125;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9992;AF=0.91;ASN_AF=0.92;AMR_AF=0.93;AFR_AF=0.91;EUR_AF=0.9 GT:DS:GL 1|1:2:-5,-1.15,-0.03 1|1:2:-5,-4.4,-0 1|1:2:-5,-2.8,-0 1|0:1:-1.12,-0.03,-5 0|0:0:-0,-4,-5 22 50597592 rs181748678 T C 100 PASS LDAF=0.0013;AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;RSQ=0.6948;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-3.13,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.89,-5 22 50597768 rs138334769 C T 100 PASS RSQ=0.9184;AN=2184;AC=8;VT=SNP;AA=.;AVGPOST=0.9991;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.07,-0.84,-5 22 50597979 rs3747938 C T 100 PASS AN=2184;AC=290;AVGPOST=0.999;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;RSQ=0.9962;LDAF=0.133;AF=0.13;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-4.7,-5 0|1:1:-3.04,-0.48,-0.17 0|0:0:-0.19,-0.45,-2.14 0|0:0:-0.01,-1.8,-5 0|0:0:0,-5,-5 22 50597988 rs186260170 G A 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;RSQ=0.7172;ERATE=0.0003;LDAF=0.0012;AC=2;AVGPOST=0.9992;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.2,-0.44,-2.02 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0,-3.28,-5 0|0:0:0,-5,-5 22 50598109 . G A 100 PASS AVGPOST=1;AN=2184;THETA=0.0001;VT=SNP;AA=.;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50598136 rs3747939 T C 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0105;VT=SNP;AA=.;AC=23;RSQ=1;ERATE=0.0003;THETA=0.0003;AF=0.01;ASN_AF=0.03;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50598233 rs117653034 C T 100 PASS ERATE=0.0004;AVGPOST=1;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=.;RSQ=1;AC=11;LDAF=0.005;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50598296 rs17781047 G A 100 PASS AC=316;AVGPOST=1;THETA=0.0002;AN=2184;VT=SNP;AA=.;RSQ=1;SNPSOURCE=LOWCOV;LDAF=0.1444;ERATE=0.0003;AF=0.14;ASN_AF=0.0035;AMR_AF=0.17;AFR_AF=0.06;EUR_AF=0.29 GT:DS:GL 1|1:2:-5,-5,0 0|0:0:0,-5,-5 0|0:0:-0,-3.47,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50598298 rs145162130 A G 100 PASS AVGPOST=1;LDAF=0.0206;AN=2184;AC=45;THETA=0.0005;VT=SNP;AA=.;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50598359 rs191488234 A G 100 PASS RSQ=0.9049;AN=2184;VT=SNP;AA=.;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50598476 rs55925167 C T 100 PASS AC=226;LDAF=0.1038;THETA=0.0002;AN=2184;VT=SNP;AA=.;RSQ=0.9948;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.1;ASN_AF=0.12;AMR_AF=0.18;AFR_AF=0.08;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-3.44,-5 1|0:1:-5,0,-5 0|0:0:-0,-2.5,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-3.47,-5 22 50598551 rs1109823 G A 100 PASS ERATE=0.0004;AVGPOST=0.9986;AN=2184;VT=SNP;AA=.;AC=699;RSQ=0.9973;LDAF=0.3202;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.32;ASN_AF=0.22;AMR_AF=0.34;AFR_AF=0.2;EUR_AF=0.46 GT:DS:GL 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0|0:0:-0,-2.16,-5 22 50601319 rs760755 T G 100 PASS AVGPOST=0.9945;RSQ=0.9782;AN=2184;AC=1957;LDAF=0.8949;VT=SNP;AA=.;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0006;AF=0.9;ASN_AF=0.96;AMR_AF=0.91;AFR_AF=0.87;EUR_AF=0.86 GT:DS:GL 1|1:2:-5,-0.68,-0.1 1|1:2:-5,-2.55,-0 1|1:2:-5,-0.91,-0.06 1|0:1:-5,-0.03,-1.13 0|0:0:-0.01,-1.55,-5 22 50601568 rs79161610 G A 100 PASS ERATE=0.0004;THETA=0.0002;LDAF=0.0071;AN=2184;VT=SNP;AA=.;RSQ=0.875;AVGPOST=0.9976;AC=14;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.12,-0.62,-2.31 0|0:0:-0.02,-1.46,-5 0|0:0:-0.07,-0.85,-5 22 50601582 rs145182321 G T 100 PASS ERATE=0.0004;AVGPOST=0.9986;AN=2184;LDAF=0.0015;VT=SNP;AA=.;RSQ=0.5882;SNPSOURCE=LOWCOV;THETA=0.0042;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.06,-0.86,-5 22 50601701 rs116131882 C T 100 PASS THETA=0.0002;RSQ=0.9709;LDAF=0.0116;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=25;AVGPOST=0.9992;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.12,-0.61,-3.12 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.04,-1.09,-5 22 50601721 rs9628267 G A 100 PASS ERATE=0.0004;AVGPOST=0.9986;AN=2184;THETA=0.0001;RSQ=0.9789;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=60;LDAF=0.0283;AF=0.03;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.01,-1.58,-5 22 50601762 rs9628268 C T 100 PASS AC=88;ERATE=0.0004;RSQ=0.9837;AVGPOST=0.9983;LDAF=0.0412;AN=2184;VT=SNP;AA=.;THETA=0.0011;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.08,-0.77,-4.7 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.8,-5 22 50601836 rs28587396 A C 100 PASS AVGPOST=0.9994;LDAF=0.0403;AN=2184;VT=SNP;AA=.;THETA=0.0006;RSQ=0.9925;AC=87;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.04;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.16,-0.51,-2.56 0|0:0:-0,-2.47,-5 0|0:0:-0.2,-0.45,-2.08 22 50601907 rs73187230 C T 100 PASS AN=2184;THETA=0.0005;VT=SNP;AA=.;AC=162;RSQ=0.9868;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0006;LDAF=0.0742;AF=0.07;ASN_AF=0.13;AMR_AF=0.13;AFR_AF=0.02;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.47,-5 1|0:1:-5,0,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.21,-0.44,-1.74 0|0:0:-0.04,-1.06,-5 22 50601912 rs140824689 C T 100 PASS RSQ=0.6628;AN=2184;THETA=0.006;LDAF=0.0015;VT=SNP;AA=.;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.2,-0.45,-1.92 0|0:0:-0.04,-1.07,-5 22 50601920 rs184900436 C T 100 PASS AN=2184;RSQ=0.698;VT=SNP;AA=.;LDAF=0.0007;THETA=0.0019;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.2,-0.45,-1.88 0|0:0:-0.01,-1.79,-5 22 50601921 rs150078803 G A 100 PASS RSQ=0.9572;AN=2184;VT=SNP;AA=.;AVGPOST=0.9991;AC=15;THETA=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0073;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.05,-5 22 50601995 rs189570616 C T 100 PASS LDAF=0.0016;AN=2184;VT=SNP;AA=.;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AC=2;RSQ=0.607;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.07,-0.84,-5 22 50602007 rs181672920 A T 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;VT=SNP;AA=.;RSQ=0.6973;AVGPOST=0.9993;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 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T TTTA 357 PASS AN=2184;VT=INDEL;THETA=0.0005;AC=298;ERATE=0.0019;AVGPOST=0.9697;RSQ=0.9058;LDAF=0.137;AF=0.14;ASN_AF=0.18;AMR_AF=0.19;AFR_AF=0.05;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-0.3,-3.1 0|1:1:-2.3,0,-0.1 0|0:0:0,-0.6,-5.5 0|0:0:0,-0.3,-4.5 0|0:0:0,0,0 22 50602299 . T TA 367 PASS AVGPOST=0.9896;AN=2184;AC=154;VT=INDEL;ERATE=0.001;THETA=0.003;RSQ=0.9376;LDAF=0.0723;AF=0.07;ASN_AF=0.12;AMR_AF=0.12;AFR_AF=0.02;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-0.3,-2.1 1|0:1:-2.4,0,-0.8 0|0:0:0,-0.6,-5.4 0|0:0:0,-0.3,-4.2 0|0:0:0,0,0 22 50602301 . T TA 65 PASS THETA=0.0021;RSQ=0.878;LDAF=0.1225;AN=2184;VT=INDEL;AVGPOST=0.9606;ERATE=0.001;AC=275;AF=0.13;AMR_AF=0.15;AFR_AF=0.06;EUR_AF=0.25 GT:DS:GL 1|1:1.95:-1.8,-0.3,0 0|0:0:0,-0.5,-1.8 0|0:0:0,-0.6,-4.9 0|0:0.2:0,-0.3,-4.2 0|0:0:0,0,0 22 50602303 . TTTTTA T 212 PASS THETA=0.0002;AN=2184;LDAF=0.3122;VT=INDEL;ERATE=0.0194;AC=636;RSQ=0.7467;AVGPOST=0.8515;AF=0.29;ASN_AF=0.22;AMR_AF=0.34;AFR_AF=0.17;EUR_AF=0.4 GT:DS:GL 1|0:1:-1.5,0,-2.2 0|0:0.05:0,0,0 1|0:1.2:-2.3,-0.3,0 0|0:0.4:0,-0.3,-8.7 0|0:0.1:0,0,0 22 50602310 . TTA T 214 PASS AN=2184;ERATE=0.026;VT=INDEL;THETA=0.0005;RSQ=0.7663;LDAF=0.4941;AC=1106;AVGPOST=0.8351;AF=0.51;ASN_AF=0.49;AMR_AF=0.69;AFR_AF=0.28;EUR_AF=0.58 GT:DS:GL 1|0:1:-2.9,0,-2.9 1|1:1.9:0,0,0 1|0:0.9:0,0,0 0|0:0.4:0,-0.3,-4.6 0|0:0:0,0,0 22 50602315 . T TA 95 PASS THETA=0.0002;AN=2184;VT=INDEL;ERATE=0.007;AVGPOST=0.9129;RSQ=0.7668;LDAF=0.169;AC=346;AF=0.16;ASN_AF=0.15;AMR_AF=0.15;AFR_AF=0.21;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-0.6,-7.5 0|0:0:0,0,0 0|0:0.45:0,0,0 0|0:0:0,-0.3,-4.2 0|0:0:0,0,0 22 50602340 rs111287080 G T 100 PASS AVGPOST=0.9957;THETA=0.0002;LDAF=0.0426;AN=2184;VT=SNP;AA=.;RSQ=0.9554;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=91;AF=0.04;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.11,-0.65,-4.4 1|0:0.8:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2 0|0:0:-0.48,-0.48,-0.48 22 50602402 rs181406607 G A 100 PASS LDAF=0.0041;THETA=0.0004;AN=2184;ERATE=0.0009;AVGPOST=0.9947;AC=6;VT=SNP;AA=.;RSQ=0.4472;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-3.8 0|0:0:-0.48,-0.48,-0.48 22 50602421 rs143496535 G C 100 PASS THETA=0.0009;AN=2184;AC=224;RSQ=0.8863;AVGPOST=0.9717;VT=SNP;AA=.;ERATE=0.0019;LDAF=0.1079;SNPSOURCE=LOWCOV;AF=0.1;ASN_AF=0.13;AMR_AF=0.17;AFR_AF=0.06;EUR_AF=0.08 GT:DS:GL 0|0:0.05:-0.18,-0.47,-2.36 1|0:1:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-3.92 0|0:0:-0.48,-0.48,-0.48 22 50602599 rs186513078 C T 100 PASS LDAF=0.0068;AN=2184;RSQ=0.5445;VT=SNP;AA=.;AC=9;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0013;AVGPOST=0.992;AF=0.0041;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.14,-0.56,-2.06 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.09,-0.71,-4.4 0|0:0.05:-0.18,-0.47,-3.07 22 50602604 rs189712576 G A 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=.;THETA=0.0006;AVGPOST=0.9991;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4251;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.13,-0.61,-2.33 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.1,-0.7,-4.22 0|0:0:-0.18,-0.46,-3.03 22 50602682 rs9628297 C G 100 PASS 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50607268 rs5771202 T C 100 PASS AN=2184;LDAF=0.3604;VT=SNP;AA=.;ERATE=0.0248;AVGPOST=0.8875;RSQ=0.8362;SNPSOURCE=LOWCOV;AC=800;THETA=0.0024;AF=0.37;ASN_AF=0.23;AMR_AF=0.42;AFR_AF=0.24;EUR_AF=0.53 GT:DS:GL 1|1:2:-5,-1.71,-0.01 0|0:0:-0.01,-1.69,-5 1|0:0.9:-0.23,-0.46,-1.22 1|0:0.65:-0.18,-0.47,-2.14 0|0:0.05:-0.09,-0.72,-4.7 22 50607409 rs116587393 T C 100 PASS ERATE=0.0004;LDAF=0.0132;AC=28;AN=2184;RSQ=0.9381;VT=SNP;AA=.;AVGPOST=0.998;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0,-2.04,-5 0|0:0:-0.02,-1.34,-5 22 50607411 rs11101951 G A 100 PASS ERATE=0.0005;RSQ=0.9843;AN=2184;VT=SNP;AA=.;THETA=0.0091;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AC=299;LDAF=0.1377;AF=0.14;ASN_AF=0.19;AMR_AF=0.19;AFR_AF=0.04;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-2.3,-5 0|1:1:-5,-0.19,-0.46 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0,-2.03,-5 0|0:0:-0.02,-1.27,-5 22 50607414 rs140283535 G T 100 PASS 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ERATE=0.0005;LDAF=0.0024;AVGPOST=0.9977;AA=G;AN=2184;RSQ=0.5781;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.19,-0.47,-2.34 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.47,-1.35 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.18,-0.47,-3.07 22 50613707 rs188926831 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.7583;AN=2184;VT=SNP;AC=10;AVGPOST=0.9969;LDAF=0.0049;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.22,-0.46,-1.3 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.01,-1.7,-5 0|0:0:-0.18,-0.47,-3.08 22 50613708 rs76158148 C T 100 PASS ERATE=0.0004;AA=C;LDAF=0.0103;AN=2184;RSQ=0.934;VT=SNP;AC=22;THETA=0.0028;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.22,-0.46,-1.32 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.01,-1.67,-5 0|0:0:-0.18,-0.47,-3.08 22 50613714 rs2294397 A G 100 PASS ERATE=0.0004;AN=2184;THETA=0.0001;VT=SNP;AVGPOST=0.9953;AC=2043;SNPSOURCE=LOWCOV;AA=a;LDAF=0.9341;RSQ=0.9693;AF=0.94;ASN_AF=0.92;AMR_AF=0.94;AFR_AF=1;EUR_AF=0.91 GT:DS:GL 1|1:2:-2.93,-0.45,-0.19 1|1:1.95:-0.21,-0.46,-1.36 1|1:2:-2.76,-0.46,-0.18 1|0:1:-3.27,-0,-5 0|0:0:-0.18,-0.47,-3.06 22 50613868 rs193124051 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.4744;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.04,-1.09,-5 22 50614054 rs61362111 T A 100 PASS ERATE=0.0004;AA=T;AN=2184;THETA=0.0005;VT=SNP;AC=54;SNPSOURCE=LOWCOV;AVGPOST=0.9984;LDAF=0.025;RSQ=0.9763;AF=0.02;AMR_AF=0.01;AFR_AF=0.1 GT:DS:GL 0|0:0:-0,-3.74,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.02,-1.43,-5 22 50614189 rs138833960 C T 100 PASS ERATE=0.0004;RSQ=0.9333;AA=C;AC=18;THETA=0.0004;AN=2184;LDAF=0.009;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-2.24,-5 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0.04,-1.11,-5 22 50614342 rs141940015 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=13;VT=SNP;AVGPOST=0.998;LDAF=0.0061;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.8673;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-1.96,-5 0|0:0:-0.12,-0.61,-3.09 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.86,-5 0|0:0:-0.07,-0.83,-5 22 50614347 rs145719631 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;LDAF=0.0007;RSQ=0.5838;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.73,-5 0|0:0:-0.06,-0.91,-5 22 50614386 rs182716744 G A 100 PASS RSQ=0.8471;LDAF=0.0068;AA=G;AN=2184;AVGPOST=0.9967;VT=SNP;AC=14;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.02,-1.26,-5 0|1:0.75:-0.07,-0.81,-4.1 0|0:0:-0,-1.99,-5 0|0:0:-0.06,-0.89,-5 22 50614476 rs5771204 T C 100 PASS AA=T;AN=2184;AVGPOST=0.9776;AC=815;VT=SNP;ERATE=0.001;LDAF=0.3716;SNPSOURCE=LOWCOV;RSQ=0.9634;THETA=0.0003;AF=0.37;ASN_AF=0.32;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.39 GT:DS:GL 1|1:1.8:-5,-1.71,-0.01 0|0:0.15:-0.21,-0.46,-1.36 0|1:1:-2.15,-0.12,-0.62 1|0:1:-3.44,-0.51,-0.16 0|0:0:-0.12,-0.63,-4.7 22 50614511 rs187400339 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;ERATE=0.0008;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=1;RSQ=0.2936;LDAF=0.0017;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.84,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.18,-0.47,-3.08 22 50614549 rs138194734 A G 100 PASS AC=17;LDAF=0.0083;AN=2184;AVGPOST=0.9979;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.8769;THETA=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.6,-2.21 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.11,-0.65,-4.7 22 50614596 rs78889708 G A 100 PASS AC=7;ERATE=0.0004;RSQ=0.7635;AA=G;AN=2184;LDAF=0.0037;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.0032;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.03,-1.15,-5 0|0:0:-0.15,-0.53,-2.97 22 50614622 rs192249600 C T 100 PASS LDAF=0.0027;AA=C;AN=2184;RSQ=0.7201;AVGPOST=0.9981;VT=SNP;THETA=0.0018;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AF=0.0018;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.07,-0.82,-5 22 50614873 rs114334367 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;AVGPOST=0.9967;VT=SNP;LDAF=0.01;SNPSOURCE=LOWCOV;RSQ=0.8765;AC=19;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.12,-0.63,-3.3 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.18,-0.47,-3.09 22 50614941 rs34539068 G GC 495 PASS ERATE=0.0013;AN=2184;AVGPOST=0.9757;VT=INDEL;LDAF=0.2143;AC=457;THETA=0.0003;RSQ=0.9459;AF=0.21;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.05;EUR_AF=0.27 GT:DS:GL 0|0:0:0,-1.5,-15.1 0|0:0:0,0,0 1|0:1:-3.6,0,-3 0|0:0:0,-0.9,-9.6 0|0:0:0,-0.3,-3.6 22 50615289 rs149618200 G A 100 PASS RSQ=0.9391;LDAF=0.0086;AC=18;THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.11,-0.64,-3.22 0|0:0:-0.01,-1.85,-5 0|0:0:-0.03,-1.22,-5 22 50615417 . G A 100 PASS AA=G;AN=2184;AC=6;VT=SNP;RSQ=0.9618;AVGPOST=0.9998;LDAF=0.0029;SNPSOURCE=EXOME;THETA=0.0029;ERATE=0.0003;AF=0.0027;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.92,-5 0|0:0:-0,-2.35,-5 0|0:0:-0,-2.75,-5 0|0:0:-0.01,-1.63,-5 22 50615777 . G A 100 PASS THETA=0.0035;RSQ=0.6978;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50616005 rs35195493 C G 100 PASS AC=12;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.996;VT=SNP;THETA=0.0007;ERATE=0.0003;LDAF=0.0055;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50616122 . G A 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;THETA=0.0052;ERATE=0.0003;RSQ=0.8316;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50616215 . C A 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.43,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50616224 rs150592820 C G 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;VT=SNP;THETA=0.0006;AVGPOST=0.9998;RSQ=0.9692;LDAF=0.0028;ERATE=0.0003;AF=0.0027;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-2.91,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50616266 rs148797329 C T 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8745;VT=SNP;LDAF=0.002;AC=4;ERATE=0.0003;AVGPOST=0.9995;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.42,-5 0|0:0.05:-0.08,-0.79,-3.21 0|0:0:-0,-3.44,-5 0|0:0:-0,-4.4,-5 22 50616386 . C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=14;LDAF=0.0074;SNPSOURCE=EXOME;AVGPOST=0.9973;RSQ=0.8515;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.36,-0.41,-0.77 0|0:0:-0.21,-0.43,-2.43 22 50616483 rs143361988 G T 100 PASS ERATE=0.0005;AVGPOST=0.9963;LDAF=0.0036;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.5875;THETA=0.0007;AF=0.0027;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.01,-1.53,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.65,-5 22 50616656 rs7286904 T C 100 PASS LDAF=0.7943;THETA=0.0015;AVGPOST=0.9089;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=1782;RSQ=0.8147;VT=SNP;ERATE=0.0056;AF=0.82;ASN_AF=0.6;AMR_AF=0.79;AFR_AF=0.98;EUR_AF=0.89 GT:DS:GL 1|1:1.9:-0.48,-0.48,-0.48 1|1:1.9:-0.48,-0.48,-0.48 1|1:1.95:-0.48,-0.48,-0.48 1|0:1:-0.11,-0.66,-4.4 0|0:0.05:-0.48,-0.48,-0.48 22 50616806 rs5771206 A G 100 PASS LDAF=0.5569;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.8615;AVGPOST=0.9077;AC=1229;VT=SNP;ERATE=0.0122;THETA=0.0003;AF=0.56;ASN_AF=0.48;AMR_AF=0.57;AFR_AF=0.52;EUR_AF=0.65 GT:DS:GL 1|1:1.75:-5,-0.68,-0.1 0|0:0.4:-0.48,-0.48,-0.48 1|1:1.9:-0.48,-0.48,-0.48 1|0:1:-0.16,-0.51,-2.54 0|0:0.05:-0.06,-0.89,-5 22 50616851 rs192666336 G C 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;AC=14;SNPSOURCE=LOWCOV;LDAF=0.007;AVGPOST=0.9984;RSQ=0.8979;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.02,-1.26,-5 0|0:0:-0.12,-0.62,-2.38 0|0:0:-0.23,-0.46,-1.21 0|0:0:-0.03,-1.16,-5 0|0:0:-0.1,-0.67,-5 22 50616863 rs147532885 G A 100 PASS ERATE=0.0004;THETA=0.0002;RSQ=0.8801;AA=G;AN=2184;AC=16;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;LDAF=0.0082;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.22,-0.46,-1.25 0|0:0:-0.03,-1.16,-5 0|0:0:-0.1,-0.67,-5 22 50617052 rs184405821 C T 100 PASS AA=C;THETA=0.0002;RSQ=0.6197;AN=2184;VT=SNP;LDAF=0.0034;AVGPOST=0.9971;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0023;AMR_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.12,-0.62,-3.21 0|0:0:-0.03,-1.17,-5 0|0:0:-0.17,-0.5,-2.84 0|0:0:-0.05,-0.93,-5 22 50617065 rs112559575 G C 100 PASS ERATE=0.0004;THETA=0.0014;AA=G;AN=2184;VT=SNP;LDAF=0.0019;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7962;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.02,-1.35,-5 22 50617078 rs140328537 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.0015;VT=SNP;THETA=0.0018;RSQ=0.6277;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.13,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.02,-1.36,-5 22 50617093 rs116075742 G T 100 PASS ERATE=0.0004;RSQ=0.8549;AVGPOST=0.9977;THETA=0.0004;LDAF=0.0066;AA=G;AN=2184;VT=SNP;AC=14;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.66,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.05,-0.96,-5 22 50617355 rs181953058 G A 100 PASS ERATE=0.0005;LDAF=0.0013;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0031;RSQ=0.7863;VT=SNP;AC=2;AVGPOST=0.9992;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.4,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.13,-0.59,-2.13 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 22 50617443 rs185079396 G A 100 PASS THETA=0.0015;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.6896;VT=SNP;LDAF=0.0007;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0,-3.49,-5 0|0:0:-0,-3.49,-5 22 50617544 . G A 100 PASS LDAF=0.0004;THETA=0.0032;RSQ=0.8054;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.9,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.34,-5 0|0:0:0,-5,-5 22 50617574 . C A 100 PASS RSQ=0.9049;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0051;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.18,-5 0|0:0:-0,-3.07,-5 0|0:0:-0,-2.49,-5 0|0:0:-0,-3.22,-5 0|0:0:0,-5,-5 22 50617589 . C T 100 PASS AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;THETA=0.0033;AA=A;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.05,-0.97,-4.1 0|0:0:-0,-4.1,-5 0|0:0:-0,-4.22,-5 22 50617599 rs144174262 C T 100 PASS AC=7;LDAF=0.0033;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.001;ERATE=0.0003;RSQ=0.9624;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.13,-0.59,-2.24 0|0:0:-0.23,-0.45,-1.19 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.62,-5 22 50617606 rs189061233 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;AC=1;RSQ=0.7571;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.09,-0.75,-3.11 0|0:0.05:-1.32,-0.02,-3.92 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50617618 rs147802589 G A 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.7933;AC=1;THETA=0.0098;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.01,-1.65,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50617653 rs114088468 C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.97,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50617717 . C T 100 PASS RSQ=0.7559;AA=C;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;THETA=0.0051;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.25,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0,-2.93,-5 0|0:0:-0,-3.92,-5 22 50617726 rs73187236 C T 100 PASS ERATE=0.0036;AA=C;AVGPOST=0.9946;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0008;VT=SNP;AC=172;LDAF=0.0794;RSQ=0.9727;AF=0.08;ASN_AF=0.07;AMR_AF=0.07;AFR_AF=0.05;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-3.4,-5 1|0:1:-5,-0,-1.96 0|0:0:-0.13,-0.59,-2.13 0|0:0:-0,-2.35,-5 0|0:0:-0,-3.07,-5 22 50617738 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.753;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.08,-0.79,-4 0|0:0:-0,-2,-5 0|0:0:-0,-3.85,-5 22 50617823 rs114455597 G A 100 PASS LDAF=0.0053;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0109;AC=11;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.9547;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.96,-5 0|0:0:-0.01,-1.76,-5 22 50617829 rs73893132 C T 100 PASS RSQ=0.9859;LDAF=0.0263;AA=C;AN=2184;AC=57;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.03;AMR_AF=0.02;AFR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.67,-5 0|0:0:-0.2,-0.44,-2.06 0|0:0:-0.21,-0.43,-1.92 0|0:0:-0.05,-0.99,-5 0|0:0:-0.01,-1.77,-5 22 50617862 rs76879368 C T 100 PASS ERATE=0.0005;AA=C;RSQ=0.9628;AN=2184;AVGPOST=0.9979;AC=55;VT=SNP;LDAF=0.0257;THETA=0.0012;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.06;AMR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.77,-5 22 50617884 rs9617114 C T 100 PASS RSQ=0.9632;AA=C;LDAF=0.2214;AN=2184;VT=SNP;ERATE=0.0035;SNPSOURCE=LOWCOV;AC=479;THETA=0.0003;AVGPOST=0.9832;AF=0.22;ASN_AF=0.26;AMR_AF=0.22;AFR_AF=0.13;EUR_AF=0.25 GT:DS:GL 0|0:0:-0.01,-1.56,-5 0|0:0:-0.48,-0.48,-0.48 1|0:1:-3.02,-0.48,-0.17 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.89,-5 22 50617968 rs7292533 T C 100 PASS AC=623;LDAF=0.2882;AA=C;AN=2184;VT=SNP;RSQ=0.9523;AVGPOST=0.9756;SNPSOURCE=LOWCOV;ERATE=0.0037;THETA=0.0003;AF=0.29;ASN_AF=0.27;AMR_AF=0.27;AFR_AF=0.33;EUR_AF=0.28 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0.1:-0.48,-0.48,-0.48 1|0:1:-3.92,-0,-3.15 0|0:0:-0.17,-0.49,-2.74 0|0:0:-0.1,-0.67,-5 22 50618001 rs74515099 G A 100 PASS AA=G;AN=2184;AC=29;VT=SNP;THETA=0.0006;RSQ=0.8838;LDAF=0.014;AVGPOST=0.9956;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.96,-4 0|0:0:-0.04,-1.1,-5 0|0:0:-0.11,-0.66,-4.7 22 50618045 rs149932269 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0168;VT=SNP;AVGPOST=0.9971;THETA=0.0012;SNPSOURCE=LOWCOV;AC=36;RSQ=0.9248;AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.92,-5 0|0:0.15:-0.12,-0.63,-4.7 22 50618066 rs9628302 G A 100 PASS AA=G;AN=2184;ERATE=0.0009;AC=104;VT=SNP;RSQ=0.9568;LDAF=0.0491;SNPSOURCE=LOWCOV;AVGPOST=0.9949;THETA=0.0003;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.18;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.34,-5 0|0:0:-0.06,-0.86,-5 22 50618078 rs181690300 C T 100 PASS LDAF=0.0027;AA=C;RSQ=0.2839;AN=2184;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9955;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.08,-0.77,-5 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.39,-5 0|0:0:-0.03,-1.11,-5 22 50618113 rs77673147 G C 100 PASS ERATE=0.0004;LDAF=0.0172;AC=35;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9209;SNPSOURCE=LOWCOV;AVGPOST=0.9965;AF=0.02;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.15,-0.54,-3.28 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.48,-5 0|0:0:-0.19,-0.46,-2.16 22 50618278 rs6010152 A G 100 PASS AN=2184;RSQ=0.9847;AC=191;VT=SNP;LDAF=0.0873;THETA=0.0006;AA=A;AVGPOST=0.997;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.09;ASN_AF=0.07;AMR_AF=0.08;AFR_AF=0.09;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 1|0:1:-5,0,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.86,-5 22 50618322 rs186460052 A G 100 PASS THETA=0.0032;AN=2184;RSQ=0.9027;AC=6;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0031;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.56,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-3.42,-5 22 50618486 rs191258266 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;RSQ=0.631;VT=SNP;AVGPOST=0.9976;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.07,-0.83,-5 0|0:0:-0.05,-0.98,-4.4 0|0:0:-0.09,-0.75,-4.4 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.06,-0.87,-5 22 50618512 rs145036669 G A 100 PASS AVGPOST=0.9977;LDAF=0.0016;AA=G;AN=2184;RSQ=0.4385;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.05,-0.99,-5 0|0:0:-0.04,-1.11,-5 0|0:0:-0.11,-0.65,-4.7 22 50618515 rs149083493 T C 100 PASS ERATE=0.0004;RSQ=0.9345;THETA=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.0049;SNPSOURCE=LOWCOV;AC=11;AVGPOST=0.9992;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.11,-0.65,-3.34 0|0:0:-0.04,-1.01,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.12,-0.63,-3.92 22 50618583 rs144918511 G A 100 PASS 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THETA=0.0009;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;AC=9;LDAF=0.0044;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8377;AF=0.0041;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.21,-0.47,-1.35 0|0:0:-0.03,-1.14,-5 0|0:0:-0.03,-1.11,-5 22 50620867 rs8137535 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9976;RSQ=0.9924;LDAF=0.1391;AC=303;SNPSOURCE=LOWCOV;AF=0.14;ASN_AF=0.19;AMR_AF=0.22;AFR_AF=0.02;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.19,-0.46,-2.68 0|1:1:-0.12,-0.62,-3.21 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.19,-0.45,-2.28 0|0:0:-0.06,-0.89,-5 22 50621004 rs111913574 G A 100 PASS ERATE=0.0004;LDAF=0.0052;AA=G;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.9079;AC=11;THETA=0.0007;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.07,-0.84,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.07,-0.85,-5 22 50621107 rs117327817 G A 100 PASS 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ERATE=0.0004;AVGPOST=0.9986;THETA=0.0002;AA=G;AN=2184;RSQ=0.9732;VT=SNP;AC=51;LDAF=0.0238;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.07;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.66,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.17,-0.5,-3.52 22 50621285 rs139583495 T C 100 PASS AC=12;ERATE=0.0004;LDAF=0.0066;AA=T;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.8078;AVGPOST=0.997;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.65,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-2,-5 0|0:0:-0.02,-1.39,-5 1|0:0.75:-0.17,-0.5,-3.55 22 50621366 rs13056445 C T 100 PASS LDAF=0.522;AA=C;AN=2184;RSQ=0.9713;VT=SNP;AVGPOST=0.9823;ERATE=0.0018;SNPSOURCE=LOWCOV;AC=1142;THETA=0.0003;AF=0.52;ASN_AF=0.48;AMR_AF=0.55;AFR_AF=0.51;EUR_AF=0.55 GT:DS:GL 0|1:1:-0.21,-0.43,-1.94 1|1:1.95:-3,-0.48,-0.17 1|0:1:-4.7,-0.01,-1.91 0|0:0:-0.14,-0.57,-3.55 0|0:0:-0.16,-0.52,-3.8 22 50621411 rs114441924 C T 100 PASS AA=C;THETA=0.0004;AN=2184;LDAF=0.0032;AC=6;VT=SNP;RSQ=0.781;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.0027;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-1,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.06,-0.91,-5 22 50621413 rs80196623 G T 100 PASS ERATE=0.0005;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=51;RSQ=0.9348;SNPSOURCE=LOWCOV;AVGPOST=0.9958;LDAF=0.025;AF=0.02;ASN_AF=0.06;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.17,-0.5,-2.8 0|0:0:-0.06,-0.91,-5 22 50621433 rs9617115 T C 100 PASS AA=C;LDAF=0.5264;AN=2184;AC=1152;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9893;THETA=0.0003;AVGPOST=0.9937;AF=0.53;ASN_AF=0.49;AMR_AF=0.56;AFR_AF=0.51;EUR_AF=0.55 GT:DS:GL 0|1:1:-2.56,-0,-5 1|1:2:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0.03,-1.16,-5 22 50621784 . A AC 138 PASS LDAF=0.0132;AC=28;AN=2184;AVGPOST=0.9944;RSQ=0.8217;VT=INDEL;ERATE=0.001;THETA=0.0003;AF=0.01;ASN_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.3,-3.4 0|0:0:0,0,0 0|0:0.05:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50621900 rs111347761 C T 100 PASS ERATE=0.0004;LDAF=0.0053;AA=C;RSQ=0.9253;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.12,-0.63,-2.33 0|0:0:-0.06,-0.87,-5 0|0:0:-0.04,-1.08,-5 22 50621949 rs67631962 TC T 456 PASS RSQ=0.982;AN=2184;VT=INDEL;LDAF=0.5249;ERATE=0.0011;AC=1148;THETA=0.0003;AVGPOST=0.9891;AF=0.53;ASN_AF=0.49;AMR_AF=0.57;AFR_AF=0.51;EUR_AF=0.54 GT:DS:GL 0|1:1:-11.3,0,-21.3 1|1:2:0,0,0 1|0:1:0,0,0 0|0:0:0,-0.3,-4.8 0|0:0:0,0,0 22 50621951 rs34610977 TC T 469 PASS THETA=0.0002;AVGPOST=0.9888;LDAF=0.5264;AN=2184;VT=INDEL;ERATE=0.001;RSQ=0.981;AC=1154;AF=0.53;ASN_AF=0.49;AMR_AF=0.57;AFR_AF=0.51;EUR_AF=0.55 GT:DS:GL 0|1:1:-10.3,0,-17.8 1|1:2:0,0,0 1|0:1:0,0,0 0|0:0:0,-0.3,-3.9 0|0:0:0,0,0 22 50621969 rs140371541 C T 100 PASS ERATE=0.0005;LDAF=0.0036;AVGPOST=0.9977;AA=C;AN=2184;AC=8;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7501;THETA=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:-0.12,-0.64,-2.5 0|0:0:-0.05,-0.99,-4.22 0|0:0:-0.15,-0.54,-2.95 0|0:0:-0.02,-1.35,-5 22 50621973 rs9617116 C T 100 PASS AC=307;AA=C;AN=2184;RSQ=0.9944;LDAF=0.1407;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AVGPOST=0.9982;AF=0.14;ASN_AF=0.19;AMR_AF=0.23;AFR_AF=0.02;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-2.63,-5 0|1:1:-2.02,-0.03,-1.21 0|0:0:-0.08,-0.8,-3.21 0|0:0:-0.15,-0.54,-2.96 0|0:0:-0.03,-1.17,-5 22 50622068 rs187569370 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;LDAF=0.0032;RSQ=0.4563;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9958;AC=3;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.03,-1.16,-5 0|0:0:-0.04,-1.07,-5 22 50622079 rs117599373 C G 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=C;THETA=0.0004;RSQ=0.9707;AN=2184;VT=SNP;LDAF=0.0242;SNPSOURCE=LOWCOV;AC=53;AF=0.02;ASN_AF=0.06;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.49,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.12,-0.62,-3.14 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.64,-4 22 50622173 rs144202460 C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0019;AVGPOST=0.9969;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.4148;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.05,-1,-4.4 0|0:0:-0.21,-0.47,-1.35 0|0:0:-0,-1.95,-5 0|0:0:-0.11,-0.65,-4.7 22 50622197 rs28708629 G A 100 PASS ERATE=0.0005;RSQ=0.9911;THETA=0.0014;AA=G;AN=2184;VT=SNP;LDAF=0.3452;SNPSOURCE=LOWCOV;AC=755;AVGPOST=0.9951;AF=0.35;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.31;EUR_AF=0.4 GT:DS:GL 0|1:1:-1.33,-0.02,-5 1|0:1:-5,-0.19,-0.45 1|0:1:-2.15,-0.11,-0.66 0|0:0:-0,-1.97,-5 0|0:0:-0.1,-0.68,-4.7 22 50622214 rs5771212 A C 100 PASS ERATE=0.0013;AA=C;THETA=0.0002;AVGPOST=0.9907;AN=2184;LDAF=0.4606;VT=SNP;RSQ=0.9852;AC=1007;SNPSOURCE=LOWCOV;AF=0.46;ASN_AF=0.43;AMR_AF=0.4;AFR_AF=0.65;EUR_AF=0.39 GT:DS:GL 1|0:1.05:-5,-1.03,-0.04 0|0:0:-0.04,-1.11,-5 0|1:1:-0.13,-0.59,-2.13 1|0:1:-1.91,-0.01,-4 1|0:1:-2.82,-0.02,-1.43 22 50622227 rs5771213 A G 100 PASS RSQ=0.9885;AN=2184;AC=1006;LDAF=0.4603;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9925;THETA=0.0003;AF=0.46;ASN_AF=0.43;AMR_AF=0.4;AFR_AF=0.65;EUR_AF=0.39 GT:DS:GL 1|0:1:-5,-0,-3.38 0|0:0:-0.02,-1.29,-5 0|1:1:-0.21,-0.47,-1.33 1|0:1:-4,-0.01,-1.48 1|0:1:-5,-0.03,-1.16 22 50622235 rs191607038 G C 100 PASS AC=7;ERATE=0.0004;AA=G;AN=2184;LDAF=0.0054;AVGPOST=0.9935;VT=SNP;THETA=0.0027;SNPSOURCE=LOWCOV;RSQ=0.5909;AF=0.0032;ASN_AF=0.01;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.11,-0.64,-3.22 0|0:0:-0.06,-0.91,-5 0|0:0:-0.06,-0.87,-5 22 50622367 rs184830094 C T 100 PASS THETA=0.0009;AA=C;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.02,-1.4,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.48,-0.48,-0.48 22 50622404 rs41283477 G C 100 PASS AC=254;AA=G;AN=2184;AVGPOST=0.9947;LDAF=0.1166;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0034;ERATE=0.0007;RSQ=0.9804;AF=0.12;ASN_AF=0.05;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.19 GT:DS:GL 1|0:1:-1.59,-0.01,-4 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.48,-5 1|0:1.05:-5,-1.26,-0.02 0|0:0:-0,-2.34,-5 22 50622441 rs189611618 G A 100 PASS ERATE=0.0004;LDAF=0.0024;AA=G;AN=2184;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;RSQ=0.5497;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.44,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.9,-5 22 50622562 rs75711073 G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=G;AN=2184;RSQ=0.9877;THETA=0.0005;VT=SNP;AC=51;SNPSOURCE=LOWCOV;LDAF=0.0236;AF=0.02;ASN_AF=0.07;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.07,-0.83,-4.22 0|0:0:-0.03,-1.16,-5 0|0:0:-0.08,-0.75,-5 22 50622627 rs181502677 C A 100 PASS AC=7;ERATE=0.0005;AA=C;THETA=0.0002;AVGPOST=0.9966;AN=2184;LDAF=0.004;VT=SNP;RSQ=0.6686;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0.05:-2.25,-0.12,-0.64 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.18,-0.47,-2.14 0|0:0:-0.02,-1.32,-5 22 50622631 rs73435203 T C 100 PASS AA=T;AN=2184;LDAF=0.0394;RSQ=0.9536;THETA=0.0005;VT=SNP;AC=82;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9949;AF=0.04;AMR_AF=0.01;AFR_AF=0.16 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.13,-0.61,-2.34 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0.03,-1.15,-5 22 50622724 rs145218816 G A 100 PASS RSQ=0.6064;AA=G;AN=2184;LDAF=0.0043;AC=6;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9961;ERATE=0.0007;THETA=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.94,-5 0|0:0:-0.34,-0.39,-0.87 22 50623151 rs115725421 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;AC=16;RSQ=0.9147;VT=SNP;LDAF=0.0072;SNPSOURCE=LOWCOV;AVGPOST=0.9984;THETA=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.12,-0.62,-2.31 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.86,-5 22 50623352 . A AGCGGGGCAGGCGGACG 820 PASS AN=2184;VT=INDEL;AC=796;THETA=0.0033;RSQ=0.6718;AVGPOST=0.7892;LDAF=0.3886;ERATE=0.0169;AF=0.36;ASN_AF=0.16;AMR_AF=0.38;AFR_AF=0.55;EUR_AF=0.39 GT:DS:GL 1|1:1.95:0,0,0 1|0:1.35:0,0,0 0|0:0.3:0,0,0 0|0:0.45:0,0,0 1|0:0.95:0,0,0 22 50623976 rs78424351 G C 100 PASS AC=12;ERATE=0.0004;LDAF=0.0067;AA=g;AN=2184;AVGPOST=0.9975;VT=SNP;RSQ=0.8343;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.71,-5 0|0:0.05:-0.2,-0.44,-2.01 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.77,-5 22 50624082 rs41283479 C G 100 PASS THETA=0.0004;AVGPOST=0.9714;AN=2184;RSQ=0.943;VT=SNP;LDAF=0.2649;AA=c;ERATE=0.0019;SNPSOURCE=LOWCOV;AC=570;AF=0.26;ASN_AF=0.11;AMR_AF=0.3;AFR_AF=0.34;EUR_AF=0.3 GT:DS:GL 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.55,-3.32 0|0:0.15:-0.48,-0.48,-0.48 0|0:0.45:-0.12,-0.62,-4.1 1|0:1:-5,-0.9,-0.06 22 50624110 rs9617117 G A 100 PASS THETA=0.0002;AA=g;AN=2184;RSQ=0.9463;VT=SNP;AC=456;SNPSOURCE=LOWCOV;ERATE=0.0022;AVGPOST=0.9751;LDAF=0.2146;AF=0.21;ASN_AF=0.27;AMR_AF=0.23;AFR_AF=0.09;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.07,-0.83,-5 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.16 22 50624198 rs7288306 C T 100 PASS ERATE=0.0334;RSQ=0.4857;THETA=0.0002;AN=2184;AC=684;LDAF=0.3527;VT=SNP;AVGPOST=0.7199;SNPSOURCE=LOWCOV;AA=N;AF=0.31;ASN_AF=0.14;AMR_AF=0.36;AFR_AF=0.33;EUR_AF=0.42 GT:DS:GL 1|1:1.9:-3.02,-0.46,-0.18 1|0:1.1:-0.48,-0.48,-0.48 0|0:0.95:-0.48,-0.48,-0.48 1|1:1.35:-0.86,-0.39,-0.34 0|0:0.85:-0.48,-0.48,-0.48 22 50624257 rs117588167 C T 100 PASS ERATE=0.0023;AN=2184;AVGPOST=0.947;THETA=0.0005;VT=SNP;AC=321;RSQ=0.8447;AA=c;LDAF=0.1535;SNPSOURCE=LOWCOV;AF=0.15;ASN_AF=0.08;AMR_AF=0.2;AFR_AF=0.1;EUR_AF=0.2 GT:DS:GL 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.1 22 50624909 rs4838860 G C 100 PASS AVGPOST=0.8165;AA=g;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0177;AC=908;RSQ=0.7073;LDAF=0.4279;SNPSOURCE=LOWCOV;AF=0.42;ASN_AF=0.36;AMR_AF=0.36;AFR_AF=0.59;EUR_AF=0.38 GT:DS:GL 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.51,-1.69 0|1:1.1:-0.48,-0.48,-0.48 1|0:1.4:-0.48,-0.48,-0.48 1|0:1.4:-3.52,-0.48,-0.18 22 50625079 rs13054650 G C 100 PASS AVGPOST=0.9348;AA=G;AN=2184;AC=753;ERATE=0.0089;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.8878;LDAF=0.3519;AF=0.34;ASN_AF=0.28;AMR_AF=0.34;AFR_AF=0.35;EUR_AF=0.39 GT:DS:GL 0|1:1.45:-3.09,-0.47,-0.18 1|0:0.9:-0.21,-0.46,-1.36 1|0:0.9:-0.48,-0.48,-0.48 0|0:0.5:-0.48,-0.48,-0.48 0|0:0.45:-0.48,-0.48,-0.48 22 50625166 rs7288889 T G 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0006;AC=1732;LDAF=0.7932;RSQ=0.9891;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.79;ASN_AF=0.73;AMR_AF=0.71;AFR_AF=0.98;EUR_AF=0.76 GT:DS:GL 1|1:2:-5,-1.01,-0.04 1|0:1:-5,-0.51,-0.16 1|1:2:-2.05,-0.02,-1.44 1|0:1:-5,-0.66,-0.11 1|0:0.95:-0.06,-0.88,-5 22 50625214 rs115824976 C T 100 PASS ERATE=0.0004;LDAF=0.0053;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.942;SNPSOURCE=LOWCOV;AC=11;THETA=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.19,-0.46,-2.41 0|0:0:-0.12,-0.63,-3.92 22 50625271 rs73187244 T C 100 PASS ERATE=0.0005;AVGPOST=0.9977;AA=T;AN=2184;RSQ=0.9899;VT=SNP;SNPSOURCE=LOWCOV;AC=218;LDAF=0.0997;THETA=0.0003;AF=0.1;ASN_AF=0.03;AMR_AF=0.09;AFR_AF=0.1;EUR_AF=0.16 GT:DS:GL 0|1:1:-4.7,-0,-5 1|0:1:-5,-0,-3.55 0|0:0:-0,-2.53,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.56,-5 22 50625424 rs148318116 C G 100 PASS ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9979;VT=SNP;AC=9;LDAF=0.0049;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.8583;AF=0.0041;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.22,-0.42,-1.69 0|0:0:-0.08,-0.78,-5 0|0:0:-0.16,-0.5,-3.59 22 50625449 rs73187245 C T 100 PASS THETA=0.0009;LDAF=0.0966;RSQ=0.9885;AA=C;AN=2184;VT=SNP;AVGPOST=0.9971;AC=210;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.1;ASN_AF=0.03;AMR_AF=0.09;AFR_AF=0.08;EUR_AF=0.16 GT:DS:GL 0|1:1:-3.3,-0.01,-1.64 1|0:1:-0.24,-0.44,-1.16 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.07,-0.84,-5 0|0:0:-0.1,-0.7,-5 22 50625625 rs141770527 G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.5118;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9984;LDAF=0.0012;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.18,-0.47,-2.8 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.09,-0.72,-5 22 50625631 rs185263225 A T 100 PASS ERATE=0.0004;LDAF=0.0041;AN=2184;THETA=0.0001;AC=6;RSQ=0.7311;VT=SNP;AA=A;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.81 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.13,-0.6,-2.19 0|0:0:-0.19,-0.46,-2.39 0|0:0:-0.09,-0.71,-5 22 50625800 rs738338 A G 100 PASS ERATE=0.0004;AC=525;THETA=0.0002;AN=2184;VT=SNP;AA=A;RSQ=0.9956;SNPSOURCE=LOWCOV;LDAF=0.2407;AVGPOST=0.9982;AF=0.24;ASN_AF=0.26;AMR_AF=0.25;AFR_AF=0.23;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.11,-0.64,-4.1 1|0:1:-1.63,-0.02,-1.97 0|0:0:-0.03,-1.17,-5 0|0:0:-0.02,-1.36,-5 22 50625935 rs8141426 G C 100 PASS THETA=0.0002;AA=G;AN=2184;AC=89;LDAF=0.0407;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.999;AVGPOST=0.9999;AF=0.04;AMR_AF=0.01;AFR_AF=0.18 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.39,-5 22 50625936 rs189675525 G A 100 PASS THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;RSQ=0.7318;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.39,-5 22 50626211 rs111258408 T C 100 PASS LDAF=0.0378;AN=2184;AVGPOST=0.9979;THETA=0.0005;VT=SNP;RSQ=0.9794;AC=81;SNPSOURCE=LOWCOV;ERATE=0.0003;AA=t;AF=0.04;AMR_AF=0.01;AFR_AF=0.16 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0.08,-0.76,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-1.2,-0.38,-0.29 0|0:0:-0.08,-0.79,-5 22 50626301 rs5771214 C T 100 PASS THETA=0.0026;LDAF=0.2339;AN=2184;AVGPOST=0.9834;VT=SNP;AA=c;RSQ=0.9653;AC=514;ERATE=0.0011;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.23;EUR_AF=0.22 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 1|0:0.95:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50626478 rs181301031 A T 100 PASS ERATE=0.0005;AN=2184;VT=SNP;AVGPOST=0.9959;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4002;AA=a;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.48,-0.48,-0.48 22 50626557 rs186720853 A C 100 PASS ERATE=0.0004;THETA=0.0004;RSQ=0.6159;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AA=a;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.42,-1.79 0|0:0:-0.01,-1.66,-5 0|0:0:-0.48,-0.48,-0.48 22 50626692 . CAG C 243 PASS AC=62;ERATE=0.0005;AN=2184;LDAF=0.0286;VT=INDEL;AVGPOST=0.9991;THETA=0.0003;RSQ=0.9862;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:0,-1.2,-22.5 0|0:0:0,-0.3,-5.6 0|0:0:0,-0.9,-16.9 0|0:0:0,-0.3,-5.6 0|0:0:0,0,0 22 50626791 rs5771215 C A 100 PASS AA=C;LDAF=0.328;RSQ=0.9871;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=719;AVGPOST=0.9931;ERATE=0.0007;THETA=0.0003;AF=0.33;ASN_AF=0.29;AMR_AF=0.34;AFR_AF=0.33;EUR_AF=0.36 GT:DS:GL 0|1:1:-4.7,-0,-3.74 1|0:1:-2.08,-0.01,-2.3 1|0:1:-5,-0,-4.7 0|0:0:-0.17,-0.5,-2.84 0|0:0:-0.02,-1.36,-5 22 50626818 rs112907587 C A 100 PASS AC=12;AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.988;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0055;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.37,-5 0|0:0:-0,-2.13,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.02,-1.32,-5 22 50626870 rs150690789 A G 100 PASS ERATE=0.0004;LDAF=0.0016;AN=2184;RSQ=0.5633;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-2.33,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.48,-0.48,-0.48 22 50626974 rs137944013 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AC=3;RSQ=0.5119;THETA=0.0003;LDAF=0.0017;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.08,-0.79,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.13 22 50626998 rs149451587 C T 100 PASS AVGPOST=0.9986;AA=C;THETA=0.0004;AN=2184;RSQ=0.545;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.2,-0.45,-2.1 22 50627027 rs189690122 C G 100 PASS AN=2184;AVGPOST=0.9996;VT=SNP;AA=c;SNPSOURCE=LOWCOV;RSQ=0.9652;AC=11;ERATE=0.0003;LDAF=0.005;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-1.94,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.12,-0.62,-3.85 22 50627060 rs143963136 G A 100 PASS AC=7;LDAF=0.0033;THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.9792;ERATE=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.01,-1.7,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.04,-1.07,-5 22 50627188 rs11912419 C T 100 PASS AA=C;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.9971;LDAF=0.0968;SNPSOURCE=LOWCOV;AC=211;THETA=0.0003;RSQ=0.9862;AF=0.1;ASN_AF=0.03;AMR_AF=0.09;AFR_AF=0.08;EUR_AF=0.16 GT:DS:GL 0|1:1:-5,-0.92,-0.06 1|0:1:-5,-0.97,-0.05 0|0:0:-0.04,-1.08,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 22 50627238 rs180936156 G A 100 PASS ERATE=0.0005;AVGPOST=0.9986;LDAF=0.0021;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.7021;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.52,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.05,-0.99,-5 22 50627253 rs1555050 C T 100 PASS ERATE=0.0005;AVGPOST=0.9927;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=1653;LDAF=0.7581;SNPSOURCE=LOWCOV;RSQ=0.9854;AF=0.76;ASN_AF=0.74;AMR_AF=0.71;AFR_AF=0.8;EUR_AF=0.77 GT:DS:GL 1|1:2:-5,-0.64,-0.11 1|0:1:-5,-0,-2.85 1|1:2:-5,-1.28,-0.02 1|0:1.05:-5,-0.78,-0.08 1|0:1:-3.19,-0.49,-0.17 22 50627289 rs139847203 C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9998;RSQ=0.7933;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.3,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.07,-0.84,-5 22 50627307 rs143385518 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.8919;AC=6;VT=SNP;AVGPOST=0.9993;THETA=0.0006;LDAF=0.0029;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.51,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.11,-0.64,-4 22 50627429 rs146228358 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.0005;VT=SNP;AC=9;RSQ=0.8445;LDAF=0.0044;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.92,-5 0|0:0:-0.01,-1.56,-5 22 50627547 rs186194529 C T 100 PASS AA=C;LDAF=0.0016;AN=2184;RSQ=0.6198;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;ERATE=0.0007;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.02,-1.38,-5 22 50627581 rs190953264 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;RSQ=0.7004;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0.19,-0.46,-2.27 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.2,-0.45,-2.1 22 50627584 rs139299347 A G 100 PASS ERATE=0.0004;RSQ=0.9042;THETA=0.0002;AN=2184;VT=SNP;AA=A;AC=14;LDAF=0.0061;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02;EUR_AF=0.0013 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LDAF=0.7814;AA=C;RSQ=0.9881;AN=2184;THETA=0.0001;AC=1712;VT=SNP;ERATE=0.0008;AVGPOST=0.9948;SNPSOURCE=LOWCOV;AF=0.78;ASN_AF=0.73;AMR_AF=0.71;AFR_AF=0.98;EUR_AF=0.73 GT:DS:GL 1|1:2:-5,-1.65,-0.01 1|0:1:-4,-0,-2.7 1|1:2:-2.73,-0.49,-0.17 1|0:0.95:-0.19,-0.45,-2.28 1|0:1:-5,-0.07,-0.85 22 50631284 rs78143127 C T 100 PASS AA=G;AN=2184;RSQ=0.9789;LDAF=0.0274;VT=SNP;AC=59;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.19,-0.45,-2.29 0|0:0:-0.02,-1.39,-5 22 50631354 rs139338321 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9983;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.5923;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.23,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.02,-1.41,-5 22 50631562 rs115646978 G A 100 PASS 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0|0:0:-0.02,-1.25,-5 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.27,-5 22 50631907 rs148680758 G A 100 PASS AC=18;AN=2184;VT=SNP;RSQ=0.9749;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AA=N;THETA=0.0003;LDAF=0.0082;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.92,-5 0|0:0:-0,-2.39,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50631945 rs77316590 C T 100 PASS AVGPOST=1;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0247;AA=c;AC=54;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.06;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50631963 . G A 100 PASS AA=g;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50632028 rs61473705 G A 100 PASS AC=30;LDAF=0.0137;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9967;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50632045 . C T 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50632055 rs144604113 G C 100 PASS THETA=0.0002;AA=g;RSQ=0.876;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50632110 . G A 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50632116 . C T 100 PASS AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.8088;SNPSOURCE=EXOME;ERATE=0.0003;LDAF=0.0012;AA=N;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50632117 rs62239319 G A 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0046;VT=SNP;AC=10;RSQ=0.9952;ERATE=0.0003;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50632359 rs75490560 G A 100 PASS AC=7;AA=G;AN=2184;RSQ=0.866;VT=SNP;AVGPOST=0.9989;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.91,-5 22 50632505 rs732710 C T 100 PASS AA=C;AC=486;AN=2184;LDAF=0.2233;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0007;RSQ=0.9921;THETA=0.0003;AF=0.22;ASN_AF=0.26;AMR_AF=0.25;AFR_AF=0.21;EUR_AF=0.2 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:-0.48,-0.48,-0.48 1|0:1:-0.19,-0.45,-2.16 0|0:0:-0.02,-1.26,-5 0|0:0:-0.06,-0.9,-5 22 50632590 rs142275925 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;AC=10;THETA=0.0006;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.8978;LDAF=0.0051;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.21,-0.43,-1.88 0|0:0:-0.06,-0.92,-5 0|0:0:-0.02,-1.46,-5 22 50632682 rs183844399 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.6738;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.2,-0.44,-1.96 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-3.07,-5 0|0:0:-0,-2.82,-5 22 50632771 . G A 100 PASS ERATE=0.0005;RSQ=0.7608;LDAF=0.0016;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;SNPSOURCE=EXOME;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.0035;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.3,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.05,-1,-4.22 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50632774 . G A 100 PASS RSQ=0.6978;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0,-2.17,-5 0|0:0:-0.03,-1.23,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50632820 . G A 100 PASS RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.1,-5 22 50632839 . G A 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0002;RSQ=0.9768;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=2;ERATE=0.0007;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-3.15,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.94,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-4.7,-5 22 50632841 rs147889489 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.53,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.22,-5 0|0:0:-0,-3.15,-5 0|0:0:-0,-4.7,-5 22 50632869 rs4838813 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=78;AVGPOST=0.9998;LDAF=0.0357;ERATE=0.0003;RSQ=0.9975;THETA=0.0003;AF=0.04;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.0041;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-3.22,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.62,-5 22 50632917 rs189156769 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.09,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.03,-1.21,-5 22 50632963 rs6537637 G T 100 PASS LDAF=0.0494;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=108;RSQ=0.9754;AVGPOST=0.9968;ERATE=0.0003;THETA=0.0003;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.15;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.79,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.06,-0.89,-5 22 50632964 rs6537638 A T 100 PASS LDAF=0.0494;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AC=108;AVGPOST=0.9968;ERATE=0.0003;THETA=0.0003;RSQ=0.975;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.15;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.75,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.06,-0.89,-5 22 50633009 rs139862873 C T 100 PASS AA=C;AN=2184;THETA=0.0005;RSQ=0.7895;VT=SNP;LDAF=0.0023;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0007;AF=0.0018;ASN_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.18,-0.46,-2.99 22 50633048 rs730559 T G 100 PASS THETA=0.0002;AVGPOST=0.9966;LDAF=0.2666;AA=G;AN=2184;VT=SNP;AC=582;SNPSOURCE=LOWCOV;RSQ=0.9933;ERATE=0.0003;AF=0.27;ASN_AF=0.24;AMR_AF=0.25;AFR_AF=0.41;EUR_AF=0.2 GT:DS:GL 0|0:0:-0,-2.57,-5 0|0:0:-0.01,-1.53,-5 1|0:0.95:-0.18,-0.47,-2.28 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.46,-2.16 22 50633222 rs145485627 A G 100 PASS AN=2184;VT=SNP;LDAF=0.0019;AA=A;RSQ=0.9535;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;THETA=0.0003;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0.11,-0.65,-3.4 0|0:0:-0.04,-1.05,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.6,-5 22 50633291 rs147688101 C T 100 PASS AC=7;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0032;VT=SNP;RSQ=1;ERATE=0.0003;THETA=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.15,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50633358 rs78610463 G A 100 PASS LDAF=0.0013;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.0003;AC=3;RSQ=0.9533;AVGPOST=0.9999;AF=0.0014;ASN_AF=0.0035;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50633382 rs150236084 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50633394 . G A 100 PASS THETA=0.0002;RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.66,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 22 50633436 rs145870754 C T 100 PASS RSQ=0.9604;AA=C;LDAF=0.0042;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;AC=9;ERATE=0.0003;THETA=0.0003;AF=0.0041;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:0,-5,-5 0|1:1:-5,-0,-4.7 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.28,-5 22 50633461 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.66,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-3.11,-5 0|0:0:-0.02,-1.46,-5 22 50633490 rs73435224 G A 100 PASS AC=12;THETA=0.0004;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;LDAF=0.0057;VT=SNP;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.47,-5 0|0:0:-0,-2.5,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.02,-1.4,-5 22 50633686 rs6537639 T C 100 PASS ERATE=0.0004;AVGPOST=0.9977;THETA=0.0004;AA=T;AN=2184;LDAF=0.1457;VT=SNP;SNPSOURCE=LOWCOV;AC=318;RSQ=0.9932;AF=0.15;ASN_AF=0.04;AMR_AF=0.1;AFR_AF=0.28;EUR_AF=0.16 GT:DS:GL 0|1:1:-5,-0,-2.55 1|0:1:-5,-0.14,-0.56 0|0:0:-0.01,-1.68,-5 0|0:0:-0.09,-0.75,-5 0|0:0:-0.01,-1.57,-5 22 50633852 rs117069858 C T 100 PASS ERATE=0.0004;AVGPOST=0.9936;AA=C;THETA=0.0002;AN=2184;RSQ=0.9206;AC=65;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0306;AF=0.03;ASN_AF=0.11;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.66,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.06,-0.88,-5 22 50633868 rs57634529 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.0101;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=21;RSQ=0.9521;THETA=0.0003;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0.05:-0.35,-0.26,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.06,-0.89,-5 22 50633890 rs9617045 G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=504;ERATE=0.0006;RSQ=0.9932;LDAF=0.2312;AF=0.23;ASN_AF=0.26;AMR_AF=0.25;AFR_AF=0.23;EUR_AF=0.2 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0,-1.96,-5 1|0:1:-5,-0.09,-0.75 0|0:0:-0.19,-0.46,-2.01 0|0:0:-0.48,-0.48,-0.48 22 50633898 rs192867368 T G 100 PASS AC=7;RSQ=0.5731;AN=2184;LDAF=0.0043;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9951;AA=t;THETA=0.0003;AF=0.0032;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.56,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.21,-0.44,-1.74 0|0:0:-0.48,-0.48,-0.48 22 50634004 rs185343639 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;RSQ=0.608;AC=3;AVGPOST=0.9982;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.05 22 50634103 rs188434719 G A 100 PASS ERATE=0.0004;RSQ=0.3959;AA=G;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.09,-0.72,-3.74 0|0:0:-0.02,-1.3,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.19,-0.45,-2.12 22 50634132 rs143815611 A G 100 PASS AN=2184;LDAF=0.011;AC=20;THETA=0.0005;AVGPOST=0.9942;VT=SNP;AA=A;ERATE=0.0011;SNPSOURCE=LOWCOV;RSQ=0.7855;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.19,-0.46,-2.28 0|0:0:-0.24,-0.45,-1.14 0|0:0:-0.06,-0.88,-5 0|0:0:-0.23,-0.41,-1.6 22 50634183 rs138546553 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;RSQ=0.6888;AVGPOST=0.9908;SNPSOURCE=LOWCOV;AC=21;LDAF=0.0115;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0.2:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.47 0|0:0:-0.24,-0.41,-1.45 22 50634212 rs114455386 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0032;THETA=0.0005;VT=SNP;RSQ=0.6276;AVGPOST=0.9964;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.97,-5 0|0:0.4:-0.2,-0.44,-2.08 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0.18,-0.47,-3.09 22 50634258 rs73893133 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;LDAF=0.0267;AN=2184;AVGPOST=0.9996;VT=SNP;AC=58;RSQ=0.9936;SNPSOURCE=LOWCOV;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0.09,-0.73,-5 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.07,-5 22 50634307 rs191687048 C T 100 PASS ERATE=0.0004;LDAF=0.0021;AA=C;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9989;RSQ=0.7684;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.11,-0.65,-3.8 0|0:0:-0.04,-1.04,-5 22 50634312 . GGCGCCT G 301 PASS ERATE=0.0004;THETA=0.0002;AN=2184;VT=INDEL;LDAF=0.0195;AVGPOST=0.9941;RSQ=0.8764;AC=42;AF=0.02;AMR_AF=0.04;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-0.9,-27.3 0|0:0:0,0,0 0|0:0:0,0,0 0|1:1:-7.2,-0.3,0 0|1:1:0,0,0 22 50634366 rs183482999 A C 100 PASS LDAF=0.0036;THETA=0.0004;AN=2184;AVGPOST=0.9942;VT=SNP;RSQ=0.4035;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-1.95,-5 0|0:0.05:-0.08,-0.78,-4.7 0|0:0:-0.12,-0.62,-3.18 0|0:0:-0.03,-1.14,-5 0|0:0.1:-0.19,-0.46,-2.16 22 50634401 rs188145881 G A 100 PASS ERATE=0.0005;RSQ=0.6625;AA=G;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9984;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.05,-0.94,-5 0|0:0:-0.19,-0.46,-2.16 22 50634486 rs181010989 C T 100 PASS ERATE=0.0005;RSQ=0.8733;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=10;SNPSOURCE=LOWCOV;AVGPOST=0.9984;LDAF=0.0051;AF=0.0046;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 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0|0:0:-0.06,-0.89,-5 0|0:0:-0.19,-0.46,-2.16 22 50634587 rs12152137 C T 100 PASS AVGPOST=0.9939;LDAF=0.2101;RSQ=0.9848;AA=C;AN=2184;VT=SNP;ERATE=0.0018;SNPSOURCE=LOWCOV;AC=455;THETA=0.0003;AF=0.21;ASN_AF=0.26;AMR_AF=0.24;AFR_AF=0.11;EUR_AF=0.22 GT:DS:GL 0|0:0:-0.02,-1.28,-5 0|0:0:-0.48,-0.48,-0.48 1|0:1:-3.02,-0.48,-0.17 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 22 50634689 rs117431860 G T 100 PASS ERATE=0.0004;RSQ=0.6042;AA=G;AN=2184;VT=SNP;AVGPOST=0.9989;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.05,-0.95,-4.7 0|0:0:-0.11,-0.63,-4.1 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50634808 rs73893134 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9873;SNPSOURCE=LOWCOV;AC=63;LDAF=0.0289;AVGPOST=0.9992;AF=0.03;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.11;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.19,-0.46,-2.3 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.04,-1.08,-5 0|0:0:-0.48,-0.48,-0.48 22 50634898 rs187138891 A G 100 PASS ERATE=0.0005;LDAF=0.0024;AVGPOST=0.9983;THETA=0.0004;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6874;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.29 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.7 22 50634899 rs141511494 C A 100 PASS ERATE=0.0004;AA=C;AC=18;THETA=0.0002;AVGPOST=0.9966;AN=2184;VT=SNP;LDAF=0.0094;RSQ=0.8854;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.13 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.7 22 50634900 rs190702379 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9979;THETA=0.0005;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;RSQ=0.5918;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.47,-2.25 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.7 22 50634943 rs181619951 A G 100 PASS 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AA=C;THETA=0.0002;ERATE=0.0023;AN=2184;AVGPOST=0.9893;VT=SNP;SNPSOURCE=LOWCOV;AC=11;RSQ=0.4702;LDAF=0.0076;AF=0.01;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.57,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.12,-0.61,-3.05 0|0:0:-0.03,-1.12,-5 0|0:0:-0.04,-1.09,-5 22 50635120 rs4084289 A G 100 PASS AVGPOST=0.9912;THETA=0.0002;AA=G;AN=2184;AC=1705;RSQ=0.9826;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.7782;AF=0.78;ASN_AF=0.72;AMR_AF=0.71;AFR_AF=0.97;EUR_AF=0.74 GT:DS:GL 1|1:2:-5,-2.83,-0 1|0:1:-0.22,-0.46,-1.3 1|1:2:-2.79,-0.5,-0.17 1|0:1:-0.1,-0.67,-4.22 1|0:1:-5,-0.7,-0.1 22 50635168 rs190094641 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0002;AN=2184;LDAF=0.0037;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9961;RSQ=0.5902;AF=0.0023;AMR_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.03,-1.17,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.11,-0.65,-4.7 22 50635193 rs4084288 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;VT=SNP;AC=478;SNPSOURCE=LOWCOV;LDAF=0.2195;RSQ=0.9955;AVGPOST=0.9982;AF=0.22;ASN_AF=0.33;AMR_AF=0.25;AFR_AF=0.08;EUR_AF=0.21 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.13,-0.59,-2.87 1|0:1:-0.3,-0.3,-4.4 0|0:0:-0.07,-0.85,-5 0|0:0:-0.2,-0.45,-2.04 22 50635249 rs182656765 G A 100 PASS LDAF=0.0095;RSQ=0.3895;AVGPOST=0.9843;THETA=0.0002;AA=G;AN=2184;AC=8;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0037;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.34,-5 0|0:0:-0.11,-0.65,-3.74 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.48,-0.48,-0.48 22 50635273 rs145373335 G A 100 PASS ERATE=0.0005;RSQ=0.8321;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AC=11;THETA=0.0003;LDAF=0.006;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.11,-0.65,-3.74 0|0:0:-0.2,-0.44,-2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50635285 rs12157931 G A 100 PASS ERATE=0.0004;THETA=0.0014;AA=G;AN=2184;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4243;AVGPOST=0.9992;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0.28,-0.43,-1 0|0:0.05:-0.2,-0.44,-2.02 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50635332 rs9628304 C T 100 PASS ERATE=0.0133;AA=C;AC=790;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9209;SNPSOURCE=LOWCOV;LDAF=0.3614;AVGPOST=0.9532;AF=0.36;ASN_AF=0.34;AMR_AF=0.33;AFR_AF=0.42;EUR_AF=0.35 GT:DS:GL 1|0:1:-4.7,-0,-3.44 0|0:0:-0.13,-0.6,-2.94 0|1:0.7:-0.03,-1.21,-5 1|0:1:-2.17,-0.02,-1.43 1|0:0.95:-0.24,-0.41,-1.48 22 50635407 rs137919095 G A 100 PASS ERATE=0.0005;RSQ=0.9316;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;AC=22;SNPSOURCE=LOWCOV;LDAF=0.0108;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.24,-5 0|0:0:-0.54,-0.15,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.2,-0.45,-2.08 22 50635411 rs190683767 G A 100 PASS AVGPOST=0.9986;AA=G;AN=2184;VT=SNP;RSQ=0.4568;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.53,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.2,-0.45,-2.1 22 50635627 rs5771095 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9983;LDAF=0.3742;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.997;AC=818;AF=0.37;ASN_AF=0.36;AMR_AF=0.34;AFR_AF=0.43;EUR_AF=0.36 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:-0,-2.47,-5 0|1:1:-0.12,-0.61,-3.02 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50635628 rs73893135 G C 100 PASS AA=C;AVGPOST=0.9966;AC=145;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9825;VT=SNP;LDAF=0.0668;ERATE=0.0006;AF=0.07;AMR_AF=0.02;AFR_AF=0.28 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.21,-5 0|0:0:-0.13,-0.58,-2.74 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635634 . G A 100 PASS AVGPOST=1;LDAF=0.0027;THETA=0.0002;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=EXOME;RSQ=1;ERATE=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.08,-0.78,-3.12 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635714 . G C 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635729 rs141382688 C T 100 PASS THETA=0.0009;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9844;VT=SNP;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.11,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635795 rs112280002 A G 100 PASS RSQ=0.9497;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;LDAF=0.0028;AC=5;ERATE=0.0003;AF=0.0023;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635801 . G T 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635831 . G A 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635848 rs2272844 C G 100 PASS AC=430;RSQ=0.9992;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.197;THETA=0.0003;AF=0.2;ASN_AF=0.26;AMR_AF=0.23;AFR_AF=0.1;EUR_AF=0.2 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.98,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635874 rs150550520 C G 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635917 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50635949 rs139568052 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636043 . C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;RSQ=0.5581;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.9,-0.06,-3.85 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636058 . T C 100 PASS ERATE=0.0004;AA=T;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.02,-1.43,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636086 rs117073176 C A 100 PASS AC=30;LDAF=0.0137;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.99;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.02,-1.46,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636097 rs115013776 G A 100 PASS RSQ=0.9838;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;LDAF=0.018;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=39;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.04,-1.04,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50636139 rs193274007 G T 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.0023;AC=5;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-1.96,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50636177 rs76160157 G A 100 PASS AA=G;AN=2184;LDAF=0.0274;VT=SNP;AVGPOST=0.9993;RSQ=0.9878;SNPSOURCE=LOWCOV;AC=60;THETA=0.0073;ERATE=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.05,-0.99,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636211 . G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;THETA=0.0003;RSQ=0.8303;LDAF=0.0008;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.59,-5 0|0:0:-0.01,-1.9,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636238 . A G 100 PASS ERATE=0.0005;LDAF=0.0009;AN=2184;RSQ=0.5736;AVGPOST=0.999;VT=SNP;AA=A;SNPSOURCE=EXOME;AC=1;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-3.74,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636357 . C T 100 PASS RSQ=0.9049;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636391 . G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7819;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-1.12,-0.03,-4.7 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636429 . C T 100 PASS AVGPOST=0.9977;AA=C;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;RSQ=0.4798;ERATE=0.0003;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.2,-0.47,-1.45 0|0:0:-0.22,-0.46,-1.27 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636514 rs145908973 G A 100 PASS ERATE=0.0005;RSQ=0.9882;AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0019;AC=4;THETA=0.0007;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636520 . C T 100 PASS AA=C;THETA=0.0002;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636526 . C T 100 PASS AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0024;RSQ=0.7497;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50636674 rs114510223 C T 100 PASS LDAF=0.0152;RSQ=0.9431;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9975;VT=SNP;AC=32;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.85,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-2.18,-5 0|0:0:-0,-2.72,-5 22 50636755 . C T 100 PASS AC=7;ERATE=0.0004;RSQ=0.5295;LDAF=0.0036;THETA=0.0014;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;AVGPOST=0.9951;AF=0.0032;ASN_AF=0.01;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-1.96,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.9,-5 0|0:0:-0.03,-1.24,-5 22 50636770 . A T 100 PASS ERATE=0.0005;THETA=0.0002;RSQ=0.5256;AN=2184;VT=SNP;SNPSOURCE=EXOME;AVGPOST=0.9988;LDAF=0.0011;AC=1;AA=N;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.23,-0.38,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0.05:-0.38,-0.44,-0.65 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-1.99,-5 22 50636774 rs149334847 C T 100 PASS LDAF=0.0041;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.6325;AC=6;VT=SNP;AA=c;ERATE=0.0006;AVGPOST=0.9961;AF=0.0027;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.84,-0.07,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0.05:-0.24,-0.45,-1.15 0|0:0:-0.02,-1.33,-5 0|0:0:-0.01,-1.93,-5 22 50636816 rs147427342 C T 100 PASS AN=2184;AVGPOST=0.9975;VT=SNP;AA=c;ERATE=0.0008;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;RSQ=0.5263;THETA=0.0003;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.57,-0.14,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.45,-1.17 0|0:0:-0.01,-1.54,-5 0|0:0:-0.01,-1.79,-5 22 50636965 rs78423345 C T 100 PASS 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ERATE=0.0004;RSQ=0.6362;AA=T;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9991;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0,-2.2,-5 22 50637597 rs8238 G C 100 PASS RSQ=0.9682;AA=C;AN=2184;AC=1220;VT=SNP;LDAF=0.5586;SNPSOURCE=LOWCOV;ERATE=0.0066;AVGPOST=0.98;THETA=0.0003;AF=0.56;ASN_AF=0.58;AMR_AF=0.6;AFR_AF=0.52;EUR_AF=0.55 GT:DS:GL 0|1:1:-5,0,-5 1|1:2:-5,-3.74,-0 1|0:1:-5,-0.07,-0.8 0|0:0:-0.04,-1.11,-5 0|0:0:-0.01,-1.87,-5 22 50637625 rs55810238 A C 100 PASS ERATE=0.0005;RSQ=0.9514;AVGPOST=0.9966;AN=2184;THETA=0.0005;VT=SNP;AC=67;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0312;AF=0.03;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.11,-0.66,-4.22 1|0:1:-5,-0,-3.01 0|0:0:-0.01,-1.75,-5 22 50637672 rs192257463 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9975;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=2;RSQ=0.5322;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.01,-5 0|0:0:-0.13,-0.6,-3.01 0|0:0:-0.2,-0.48,-1.43 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.71,-5 22 50637825 rs73893137 C T 100 PASS ERATE=0.0005;RSQ=0.9759;AA=C;THETA=0.0002;AN=2184;LDAF=0.0275;VT=SNP;SNPSOURCE=LOWCOV;AC=60;AVGPOST=0.9984;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0.23,-0.41,-1.64 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.67,-5 22 50637922 rs6712 G C 100 PASS ERATE=0.0005;RSQ=0.9731;THETA=0.0004;AN=2184;AVGPOST=0.9952;VT=SNP;AA=A;AC=147;LDAF=0.0679;SNPSOURCE=LOWCOV;AF=0.07;ASN_AF=0.02;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.12 GT:DS:GL 0|1:1:-0.18,-0.47,-2.41 1|0:1:-2.03,-0.02,-1.51 0|0:0:-0.02,-1.45,-5 0|0:0:-0.17,-0.5,-2.84 0|0:0:-0.02,-1.34,-5 22 50637972 rs145334530 C T 100 PASS ERATE=0.0005;AA=C;AVGPOST=0.9983;LDAF=0.0047;AN=2184;RSQ=0.8603;VT=SNP;AC=9;SNPSOURCE=LOWCOV;THETA=0.002;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-1.1,-0.04,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.01,-1.59,-5 22 50637977 rs183902725 C T 100 PASS AA=C;AN=2184;LDAF=0.0018;RSQ=0.5785;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;THETA=0.0003;AF=0.0018;ASN_AF=0.0035;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.51,-5 22 50638086 rs2272845 C G 100 PASS AA=C;AC=440;THETA=0.0002;AN=2184;VT=SNP;ERATE=0.0008;RSQ=0.9809;LDAF=0.2029;SNPSOURCE=LOWCOV;AVGPOST=0.992;AF=0.2;ASN_AF=0.24;AMR_AF=0.24;AFR_AF=0.08;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.13,-0.6,-3.74 1|0:1:-1.87,-0.03,-1.23 0|0:0:-0.05,-0.95,-5 0|0:0:-0.07,-0.84,-5 22 50638107 rs111346160 C A 100 PASS AC=17;ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.8725;SNPSOURCE=LOWCOV;THETA=0.0003;LDAF=0.0077;AF=0.01;ASN_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.2,-0.48,-1.46 0|0:0:-0.07,-0.8,-4.1 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.48,-0.48,-0.48 22 50638110 rs41283481 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9959;LDAF=0.0097;SNPSOURCE=LOWCOV;AC=19;RSQ=0.8223;AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.13,-0.6,-2.31 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.18,-0.46,-2.43 0|0:0.05:-0.48,-0.48,-0.48 22 50638171 rs113214100 C CA 454 PASS AC=343;RSQ=0.9042;AN=2184;VT=INDEL;AVGPOST=0.9646;LDAF=0.1645;ERATE=0.0066;THETA=0.0003;AF=0.16;ASN_AF=0.08;AMR_AF=0.11;AFR_AF=0.25;EUR_AF=0.18 GT:DS:GL 0|1:1:-8.2,0,-7.2 1|0:1:0,0,0 0|0:0.1:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50638194 rs147697284 G A 100 PASS 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ERATE=0.0004;THETA=0.0004;RSQ=0.9755;AA=G;AN=2184;VT=SNP;AC=56;SNPSOURCE=LOWCOV;LDAF=0.0261;AVGPOST=0.9984;AF=0.03;ASN_AF=0.07;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.12,-0.63,-4 0|0:0:-0.05,-0.99,-5 0|0:0:-0.18,-0.46,-3.02 22 50638612 rs73893138 C G 100 PASS THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9878;AC=100;VT=SNP;ERATE=0.001;LDAF=0.0492;RSQ=0.9035;SNPSOURCE=LOWCOV;AF=0.05;ASN_AF=0.07;AMR_AF=0.04;AFR_AF=0.08;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.08,-0.77,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.47,-5 0|0:0:-0.07,-0.85,-5 22 50638811 rs151311757 G A 100 PASS AA=G;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.8143;AVGPOST=0.9938;SNPSOURCE=LOWCOV;LDAF=0.0128;AC=25;THETA=0.0003;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.12,-0.62,-4 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.04,-1.09,-5 22 50638864 rs114153455 G A 100 PASS ERATE=0.0005;RSQ=0.705;LDAF=0.0058;AA=G;AN=2184;VT=SNP;AVGPOST=0.9956;SNPSOURCE=LOWCOV;AC=11;THETA=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.13 0|0:0:-0.18,-0.46,-2.99 22 50638953 rs1009610 A G 100 PASS RSQ=0.9651;LDAF=0.5799;AA=G;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0016;AC=1279;SNPSOURCE=LOWCOV;AVGPOST=0.9764;AF=0.59;ASN_AF=0.51;AMR_AF=0.47;AFR_AF=0.82;EUR_AF=0.54 GT:DS:GL 1|1:2:-5,-0.65,-0.11 1|0:1:-0.48,-0.48,-0.48 0|1:0.95:-0.23,-0.46,-1.24 1|0:1:-0.36,-0.41,-0.78 1|0:0.95:-0.95,-0.38,-0.33 22 50639059 rs28668373 G T 100 PASS ERATE=0.0082;THETA=0.0004;AA=G;AN=2184;LDAF=0.387;VT=SNP;AVGPOST=0.8793;SNPSOURCE=LOWCOV;AC=823;RSQ=0.8076;AF=0.38;ASN_AF=0.37;AMR_AF=0.34;AFR_AF=0.43;EUR_AF=0.36 GT:DS:GL 0|0:0.45:-0.18,-0.48,-2.47 0|0:0.05:-0.48,-0.48,-0.48 0|1:0.75:-0.48,-0.48,-0.48 1|0:1:-2.98,-0.47,-0.18 1|0:1:-0.48,-0.48,-0.48 22 50639250 rs140544546 C G 100 PASS AA=C;AN=2184;AC=77;VT=SNP;ERATE=0.0017;AVGPOST=0.966;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0429;RSQ=0.6728;AF=0.04;ASN_AF=0.06;AMR_AF=0.03;AFR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.19,-0.45,-2.18 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50639320 rs145912868 C A 100 PASS AA=C;AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.8013;SNPSOURCE=LOWCOV;LDAF=0.0213;AC=39;THETA=0.0003;AVGPOST=0.9891;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.06;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.04 0|1:0.95:-0.36,-0.41,-0.78 0|1:0.95:-0.48,-0.48,-0.48 22 50639360 . T TC 30 PASS ERATE=0.0189;AN=2184;VT=INDEL;RSQ=0.6092;LDAF=0.4016;AVGPOST=0.7486;AC=818;THETA=0.0003;AF=0.37;ASN_AF=0.39;AMR_AF=0.33;AFR_AF=0.55;EUR_AF=0.27 GT:DS:GL 1|0:1:0,-0.3,-1.3 0|0:0.15:0,0,0 0|1:0.7:0,0,0 0|0:0.05:0,0,0 1|0:0.9:0,0,0 22 50639366 . CA C 63 PASS AVGPOST=0.8007;RSQ=0.7035;AN=2184;ERATE=0.0105;VT=INDEL;LDAF=0.4471;AC=950;THETA=0.0003;AF=0.43;ASN_AF=0.41;AMR_AF=0.29;AFR_AF=0.72;EUR_AF=0.34 GT:DS:GL 1|1:1.5:0,-0.2,-0.4 0|0:0.45:0,0,0 0|1:1:0,0,0 0|0:0.05:0,0,0 1|0:0.95:0,0,0 22 50639367 rs7293065 A C 100 PASS RSQ=0.7174;LDAF=0.5207;AN=2184;ERATE=0.0126;AVGPOST=0.8201;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AC=1185;THETA=0.0003;AF=0.54;ASN_AF=0.52;AMR_AF=0.45;AFR_AF=0.73;EUR_AF=0.49 GT:DS:GL 1|0:1.3:-3,-0.46,-0.19 1|0:0.9:-0.48,-0.48,-0.48 0|1:1.15:-0.48,-0.48,-0.48 1|0:1:-0.19,-0.46,-2.36 1|0:0.75:-0.48,-0.48,-0.48 22 50639473 rs5771225 T C 100 PASS THETA=0.0009;AA=C;AVGPOST=0.9388;AN=2184;RSQ=0.9087;VT=SNP;AC=1279;ERATE=0.0049;SNPSOURCE=LOWCOV;LDAF=0.5762;AF=0.59;ASN_AF=0.5;AMR_AF=0.48;AFR_AF=0.83;EUR_AF=0.55 GT:DS:GL 1|1:2:-5,-0.59,-0.13 1|0:0.8:-0.48,-0.48,-0.48 0|1:1:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 1|0:0.8:-0.48,-0.48,-0.48 22 50639528 rs5771226 T C 100 PASS THETA=0.0009;AA=C;AN=2184;VT=SNP;ERATE=0.0017;RSQ=0.942;AVGPOST=0.9612;LDAF=0.5824;SNPSOURCE=LOWCOV;AC=1267;AF=0.58;ASN_AF=0.52;AMR_AF=0.47;AFR_AF=0.78;EUR_AF=0.55 GT:DS:GL 1|1:1.85:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 0|1:0.95:-0.48,-0.48,-0.48 1|0:0.75:-0.48,-0.48,-0.48 1|0:1:-0.19,-0.46,-2.16 22 50639606 rs146628870 G A 100 PASS AC=88;RSQ=0.55;THETA=0.0004;AA=G;AN=2184;LDAF=0.0565;VT=SNP;AVGPOST=0.9379;ERATE=0.0018;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.06;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.21,-0.43,-1.94 0|0:0.05:-0.48,-0.48,-0.48 0|1:0.85:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50639636 rs6010201 C G 100 PASS AC=1174;LDAF=0.5357;AA=G;AN=2184;ERATE=0.0044;THETA=0.0005;VT=SNP;RSQ=0.8926;AVGPOST=0.9263;SNPSOURCE=LOWCOV;AF=0.54;ASN_AF=0.5;AMR_AF=0.43;AFR_AF=0.66;EUR_AF=0.53 GT:DS:GL 1|1:1.95:-0.87,-0.39,-0.34 1|0:0.95:-0.48,-0.48,-0.48 0|1:1.1:-0.48,-0.48,-0.48 1|0:1.5:-2.72,-0.45,-0.19 1|0:1.5:-0.48,-0.48,-0.48 22 50639778 rs3747942 T C 100 PASS LDAF=0.5463;AA=C;AVGPOST=0.8713;AN=2184;RSQ=0.8034;AC=1180;ERATE=0.01;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AF=0.54;ASN_AF=0.51;AMR_AF=0.45;AFR_AF=0.67;EUR_AF=0.53 GT:DS:GL 1|1:2:-0.48,-0.48,-0.48 1|0:0.9:-0.48,-0.48,-0.48 0|1:1.05:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 22 50639784 rs184575812 G A 100 PASS THETA=0.0004;AA=G;AN=2184;LDAF=0.0569;VT=SNP;AC=78;AVGPOST=0.9156;ERATE=0.0049;SNPSOURCE=LOWCOV;RSQ=0.4009;AF=0.04;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.06;EUR_AF=0.04 GT:DS:GL 0|0:0.45:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.4:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50639915 rs190207485 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9717;VT=SNP;AC=34;LDAF=0.0223;SNPSOURCE=LOWCOV;ERATE=0.0012;RSQ=0.5318;THETA=0.0003;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.16,-5 0|0:0.05:-0.48,-0.48,-0.48 22 50639965 rs2272846 C A 100 PASS LDAF=0.5572;AA=C;RSQ=0.8862;AN=2184;ERATE=0.0047;AVGPOST=0.9234;AC=1220;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0024;AF=0.56;ASN_AF=0.52;AMR_AF=0.46;AFR_AF=0.72;EUR_AF=0.53 GT:DS:GL 1|1:2:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 0|1:0.55:-0.48,-0.48,-0.48 1|1:1.75:-5,-0.66,-0.11 1|1:1.7:-0.48,-0.48,-0.48 22 50640208 rs182438828 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9979;AC=6;VT=SNP;THETA=0.0046;LDAF=0.0034;RSQ=0.7389;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.28,-5 0|0:0.05:-0.13,-0.6,-2.2 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.11,-0.66,-4.7 22 50640322 rs185085425 G C 100 PASS ERATE=0.0005;LDAF=0.0036;AA=G;AN=2184;AC=8;THETA=0.0005;VT=SNP;AVGPOST=0.9969;RSQ=0.7007;SNPSOURCE=LOWCOV;AF=0.0037;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.11,-0.65,-2.58 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.77,-5 22 50640336 rs145201192 G T 100 PASS AC=12;AA=G;AN=2184;AVGPOST=0.9952;ERATE=0.0009;VT=SNP;RSQ=0.6954;SNPSOURCE=LOWCOV;LDAF=0.0065;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.9,-5 0|0:0:-0.02,-1.43,-5 22 50640353 rs73435239 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9975;VT=SNP;AC=95;LDAF=0.0447;RSQ=0.9797;SNPSOURCE=LOWCOV;AF=0.04;AMR_AF=0.01;AFR_AF=0.19 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.06,-0.92,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.42,-1.91 0|0:0:-0.02,-1.3,-5 22 50640608 rs189051159 T C 100 PASS AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.6007;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-3.66,-5 22 50640645 . G GAAA 386 PASS ERATE=0.0014;AVGPOST=0.981;THETA=0.0002;AN=2184;RSQ=0.9705;VT=INDEL;AC=1117;LDAF=0.5081;AF=0.51;ASN_AF=0.51;AMR_AF=0.45;AFR_AF=0.53;EUR_AF=0.53 GT:DS:GL 1|1:1.95:-7.1,-0.6,0 1|0:1:0,0,0 0|1:0.95:0,0,0 1|0:1:-3,0,-4.2 1|0:1:0,0,0 22 50640646 rs76246236 A C 100 PASS ERATE=0.0005;AN=2184;AC=100;LDAF=0.0467;VT=SNP;AA=A;RSQ=0.9663;SNPSOURCE=LOWCOV;AVGPOST=0.9955;THETA=0.0003;AF=0.05;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.19 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.92,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.12,-0.61,-5 0|0:0:-0,-2.11,-5 22 50640646 rs55778043 A AAAACAATACCCAC 2137 PASS AC=1115;THETA=0.0004;AN=2184;RSQ=0.9641;VT=INDEL;ERATE=0.0012;LDAF=0.505;AVGPOST=0.9755;AF=0.51;ASN_AF=0.51;AMR_AF=0.45;AFR_AF=0.53;EUR_AF=0.53 GT:DS:GL 1|1:1.95:-31,-0.6,0 1|0:0.95:0,0,0 0|1:0.95:0,0,0 1|0:1:-19.3,0,-11.3 1|0:1:0,0,0 22 50640843 rs74833777 C T 100 PASS AC=62;AA=C;LDAF=0.0288;AN=2184;RSQ=0.9612;AVGPOST=0.9972;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.03;ASN_AF=0.05;AMR_AF=0.09;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-2.12,-5 22 50640864 rs137939518 C T 100 PASS RSQ=0.6058;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0019;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.02,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.02,-1.41,-5 22 50640906 rs149496957 G T 100 PASS RSQ=0.9391;AVGPOST=0.9986;AA=G;AN=2184;AC=16;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0029;ERATE=0.0003;LDAF=0.008;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.03,-1.2,-5 22 50640948 rs79163610 C G 100 PASS ERATE=0.0004;AA=C;LDAF=0.0016;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.4734;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 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ERATE=0.0004;LDAF=0.7934;AN=2184;AVGPOST=0.9979;THETA=0.0005;VT=SNP;AA=A;AC=1735;SNPSOURCE=LOWCOV;RSQ=0.9947;AF=0.79;ASN_AF=0.76;AMR_AF=0.71;AFR_AF=0.97;EUR_AF=0.75 GT:DS:GL 1|1:2:-5,-2.61,-0 1|0:1:-5,-0.72,-0.09 1|1:2:-5,-2.2,-0 1|0:1:-4.7,-0.02,-1.41 1|0:1:-4.1,-0,-5 22 50641436 rs79753353 T G 100 PASS LDAF=0.0305;AA=T;AN=2184;THETA=0.0031;RSQ=0.9778;AC=65;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.03;ASN_AF=0.08;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.66,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-3.44,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-3.25,-5 22 50641813 rs148255818 A G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-2.85,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.11,-0.64,-4.1 22 50641840 rs186092274 C A 100 PASS 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rs55817868 T G 100 PASS AA=T;AN=2184;LDAF=0.0178;VT=SNP;RSQ=0.8294;SNPSOURCE=LOWCOV;AC=36;ERATE=0.0007;AVGPOST=0.992;THETA=0.0003;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.05;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.12,-0.62,-3.85 22 50644444 rs59892095 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=78;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0359;RSQ=0.9947;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.12,-0.62,-3.25 0|0:0:-0.12,-0.64,-2.4 0|0:0:-0.17,-0.49,-2.44 0|0:0:-0.1,-0.67,-5 22 50644480 rs56109781 T C 100 PASS AC=1309;RSQ=0.9931;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9958;LDAF=0.598;AF=0.6;ASN_AF=0.57;AMR_AF=0.5;AFR_AF=0.73;EUR_AF=0.58 GT:DS:GL 1|1:2:-5,-1.38,-0.02 1|0:1:-0.12,-0.6,-3.05 0|1:0.9:-0.12,-0.62,-3.17 1|0:1:-4.4,-0.03,-1.2 1|0:1:-1.91,-0.01,-5 22 50644505 rs138206175 G A 100 PASS 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G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50644957 rs148307279 C T 100 PASS LDAF=0.0004;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.8499;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50644960 rs141402017 G C 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=22;LDAF=0.0101;RSQ=0.9942;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.01;AMR_AF=0.06;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50644969 rs2294399 G A 100 PASS RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=853;LDAF=0.39;ERATE=0.0028;THETA=0.0003;AVGPOST=0.996;AF=0.39;ASN_AF=0.37;AMR_AF=0.37;AFR_AF=0.43;EUR_AF=0.39 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|1:1:-5,-0.09,-0.74 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AC=12;ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;LDAF=0.0057;VT=SNP;AVGPOST=0.9989;RSQ=0.9119;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.75,-4.7 0|0:0:-0.06,-0.87,-5 1|0:1:-5,-0.02,-1.38 22 50646835 . GACA G 106 PASS ERATE=0.0004;THETA=0.0004;AN=2184;LDAF=0.0043;VT=INDEL;RSQ=0.9496;AC=9;AVGPOST=0.9995;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-1.5,-33.5 0|0:0:0,0,0 0|0:0:0,-0.3,-6.7 0|0:0:0,0,0 0|0:0:0,0,0 22 50646936 rs5771102 G C 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.7075;AC=1546;VT=SNP;RSQ=0.9983;ERATE=0.0008;AVGPOST=0.9992;AF=0.71;ASN_AF=0.76;AMR_AF=0.62;AFR_AF=0.87;EUR_AF=0.61 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:0,-5,-5 1|1:2:-5,-4.7,-0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50646944 rs117080345 C T 100 PASS AC=7;LDAF=0.0033;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8711;VT=SNP;AVGPOST=0.9989;ERATE=0.0003;THETA=0.0003;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50646965 . G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50646998 rs77054338 T C 100 PASS AVGPOST=1;LDAF=0.0004;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;RSQ=0.95;VT=SNP;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50647038 rs151171493 G A 100 PASS RSQ=0.7151;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50647085 rs115291919 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9641;AVGPOST=0.9997;LDAF=0.0043;VT=SNP;AC=9;ERATE=0.0003;THETA=0.0003;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50647086 rs141180808 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9767;VT=SNP;LDAF=0.0019;AC=4;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50647098 . G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50647166 rs146956333 C T 100 PASS AC=17;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9991;ERATE=0.0003;LDAF=0.0076;RSQ=0.9591;THETA=0.0003;AF=0.01;ASN_AF=0.0035;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.21,-5 0|0:0:-0,-2.58,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50647178 rs182724775 G A 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;AC=1;RSQ=0.7844;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3,-5 0|0:0:-0.01,-1.71,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50647256 rs8140726 C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;AC=10;LDAF=0.0049;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9452;THETA=0.0003;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0,-2.1,-5 0|0:0:0,-5,-5 22 50647274 rs2272850 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0002;AN=2184;LDAF=0.0463;VT=SNP;AC=101;SNPSOURCE=LOWCOV;RSQ=0.9918;AVGPOST=0.9992;AF=0.05;ASN_AF=0.14;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-4.7,-5 22 50647375 rs760743 C T 100 PASS AA=C;THETA=0.0002;LDAF=0.3928;AN=2184;VT=SNP;AC=859;AVGPOST=0.9964;SNPSOURCE=LOWCOV;RSQ=0.9933;ERATE=0.0007;AF=0.39;ASN_AF=0.37;AMR_AF=0.38;AFR_AF=0.43;EUR_AF=0.39 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:-0.48,-0.48,-0.48 0|1:1:-2.3,-0.02,-1.5 1|0:1:-1.52,-0.01,-3.7 1|0:1:-5,-0.02,-1.46 22 50647410 rs142151439 G A 100 PASS THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9878;VT=SNP;AC=31;LDAF=0.0162;SNPSOURCE=LOWCOV;RSQ=0.7116;ERATE=0.0007;AF=0.01;ASN_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.23,-0.46,-1.21 0|0:0:-0.06,-0.87,-5 0|0:0:-0.03,-1.2,-5 22 50647448 rs55958053 T G 100 PASS AC=187;THETA=0.0002;AA=T;AN=2184;AVGPOST=0.9934;VT=SNP;RSQ=0.9679;SNPSOURCE=LOWCOV;LDAF=0.0869;ERATE=0.0007;AF=0.09;ASN_AF=0.03;AMR_AF=0.08;AFR_AF=0.08;EUR_AF=0.14 GT:DS:GL 0|1:1:-5,-0,-3.92 1|0:1:-2.18,-0.11,-0.67 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.01,-1.5,-5 0|0:0:-0.03,-1.15,-5 22 50647525 rs188703448 G A 100 PASS ERATE=0.0005;RSQ=0.6155;AA=G;AN=2184;VT=SNP;AC=10;AVGPOST=0.9938;SNPSOURCE=LOWCOV;LDAF=0.0069;THETA=0.0003;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.19 0|0:0:-0.03,-1.13,-5 0|0:0:-0.02,-1.39,-5 22 50647568 rs138628551 G A 100 PASS ERATE=0.0005;AVGPOST=0.9985;RSQ=0.5181;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0012;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.96,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.21,-0.43,-1.9 22 50647730 rs149354222 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9944;VT=SNP;AC=9;LDAF=0.0056;SNPSOURCE=LOWCOV;RSQ=0.6415;THETA=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50647893 rs144654277 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;LDAF=0.0026;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7047;AVGPOST=0.9984;THETA=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.12,-0.63,-3.27 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.03,-1.19,-5 0|0:0:-0.04,-1.08,-5 22 50647966 rs4602327 A G 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9927;VT=SNP;LDAF=0.5826;AC=1272;AVGPOST=0.9954;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.58;ASN_AF=0.63;AMR_AF=0.59;AFR_AF=0.57;EUR_AF=0.55 GT:DS:GL 0|1:1:-5,-0.03,-1.21 1|1:2:-2.9,-0.49,-0.17 1|0:1:-4.7,-0.22,-0.39 0|0:0:-0.03,-1.2,-5 0|0:0:-0.04,-1.06,-5 22 50647969 rs4611754 C T 100 PASS AC=461;AA=C;AN=2184;VT=SNP;LDAF=0.2116;RSQ=0.991;AVGPOST=0.9964;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.21;ASN_AF=0.25;AMR_AF=0.21;AFR_AF=0.23;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.12,-0.62,-2.4 1|0:1:-4.7,-0.23,-0.39 0|0:0:-0.05,-0.99,-5 0|0:0:-0.06,-0.87,-5 22 50648002 rs116517135 T A 100 PASS AC=301;ERATE=0.0004;AA=T;AN=2184;AVGPOST=0.9924;LDAF=0.1383;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9784;THETA=0.0003;AF=0.14;ASN_AF=0.33;AMR_AF=0.06;AFR_AF=0.09;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.07,-0.81,-3.47 0|1:1:-4.7,-0.24,-0.38 0|0:0:-0.29,-0.39,-1.12 0|0:0:-0.06,-0.9,-5 22 50648031 rs138214255 G A 100 PASS ERATE=0.0005;RSQ=0.7947;THETA=0.0004;AA=G;AN=2184;LDAF=0.0018;VT=SNP;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9992;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.53,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.33,-0.41,-0.87 0|0:0:-0.12,-0.63,-4 22 50648099 rs142897683 G A 100 PASS AC=18;THETA=0.0002;AA=G;AN=2184;LDAF=0.0084;VT=SNP;AVGPOST=0.9959;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.7956;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.08,-0.77,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.09,-0.73,-4.7 0|0:0:-0.08,-0.76,-5 0|0:0:-0.04,-1.06,-5 22 50648183 rs191761386 G A 100 PASS THETA=0.0002;AA=g;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.29,-0.38,-1.17 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.21,-0.47,-1.35 0|0:0:-0.17,-0.5,-2.83 0|0:0:-0.07,-0.85,-5 22 50648220 rs183275329 T C 100 PASS ERATE=0.0005;LDAF=0.0013;AA=T;AN=2184;AVGPOST=0.9981;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.3501;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.28,-0.39,-1.13 0|0:0:-0.12,-0.61,-2.35 0|0:0:-0.08,-0.78,-3.15 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.11,-0.64,-4.1 22 50648221 . T TG 139 PASS THETA=0.0002;AN=2184;RSQ=0.5806;VT=INDEL;ERATE=0.0051;LDAF=0.0488;AVGPOST=0.9475;AC=71;AF=0.03;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.06 GT:DS:GL 1|0:0.95:-2.8,-0.3,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50648223 rs140144566 G T 100 PASS AVGPOST=0.9983;AA=G;AN=2184;AC=57;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9738;ERATE=0.0006;LDAF=0.0268;THETA=0.0003;AF=0.03;ASN_AF=0.04;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.17,-0.5,-2.74 0|0:0:-0.1,-0.68,-2.75 0|0:0:-0.08,-0.76,-3.06 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.48,-0.48,-0.48 22 50648459 rs79379438 G A 100 PASS ERATE=0.0004;LDAF=0.0021;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=4;THETA=0.001;AVGPOST=0.9995;RSQ=0.8799;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.44,-5 0|0:0:-0,-2.21,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0,-2,-5 0|0:0:0,-5,-5 22 50648481 rs73187260 C G 100 PASS AA=C;AN=2184;VT=SNP;LDAF=0.0303;AC=66;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9828;THETA=0.0003;AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.94,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.01,-1.49,-5 1|0:1:-4.22,-0,-5 0|0:0:0,-5,-5 22 50648482 rs62239322 G T 100 PASS ERATE=0.0005;AA=G;AN=2184;LDAF=0.055;AC=119;VT=SNP;RSQ=0.9671;AVGPOST=0.9954;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.05;AMR_AF=0.07;AFR_AF=0.04;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.97,-5 0|0:0:-0,-2.76,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-3.24,-5 1|0:1:-5,0,-5 22 50648557 rs142115826 G T 100 PASS RSQ=0.7559;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.72,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.36,-5 22 50648577 rs2294401 C T 100 PASS RSQ=0.9911;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=c;LDAF=0.1765;ERATE=0.0011;AC=385;AVGPOST=0.9968;AF=0.18;ASN_AF=0.24;AMR_AF=0.2;AFR_AF=0.08;EUR_AF=0.18 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.17,-5 1|0:1:-3.3,-0,-4.22 0|0:0:0,-5,-5 0|0:0:-0,-2.81,-5 22 50648617 . G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=g;AN=2184;AVGPOST=0.9996;VT=SNP;SNPSOURCE=EXOME;AC=0;LDAF=0.0002;RSQ=0.0607;AF=0 GT:DS:GL 0|0:0:-0,-3.34,-5 0|0:0:-0,-2.63,-5 0|0:0:-0.01,-1.67,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50648681 rs116038918 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0303;AVGPOST=0.9998;AC=66;ERATE=0.0003;RSQ=0.9962;AF=0.03;AMR_AF=0.02;AFR_AF=0.12 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.15,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50648788 . G A 100 PASS ERATE=0.0005;THETA=0.0004;RSQ=0.1875;AA=G;AN=2184;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=0;AVGPOST=0.9988;AF=0 GT:DS:GL 0|0:0:-0.13,-0.6,-4.7 0|0:0:-0.07,-0.84,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.42,-5 22 50648789 . T C 100 PASS LDAF=0.0067;AA=T;AN=2184;RSQ=0.8738;VT=SNP;AVGPOST=0.998;SNPSOURCE=EXOME;AC=15;ERATE=0.0006;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.47,-2.82 0|0:0:-0.08,-0.79,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.76,-5 22 50648792 rs80199909 G A 100 PASS LDAF=0.0436;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=95;RSQ=0.9915;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.04;AMR_AF=0.01;AFR_AF=0.19 GT:DS:GL 0|0:0:-0.07,-0.82,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.83,-5 22 50648984 rs188081821 C T 100 PASS AA=C;RSQ=0.93;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0006;AC=9;LDAF=0.0044;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.38,-0.44,-0.65 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50648988 rs191353603 T G 100 PASS AA=T;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.7176;AVGPOST=0.9991;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.65,-5 0|0:0:-0.23,-0.46,-1.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649011 . C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AC=1;RSQ=0.6021;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.12,-0.62,-2.28 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649034 . C T 100 PASS ERATE=0.0004;RSQ=0.9405;AA=C;THETA=0.0002;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.05,-1,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649051 rs182343661 G A 100 PASS LDAF=0.0152;ERATE=0.0074;AA=G;AN=2184;VT=SNP;AC=24;AVGPOST=0.9845;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.605;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.11,-0.66,-2.49 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649103 rs187774731 C T 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;RSQ=0.8497;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.02,-1.28,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649104 . G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.7255;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.04,-1.09,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649120 . G T 100 PASS AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.6907;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.04,-1.05,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649126 rs150909406 C T 100 PASS AC=7;AVGPOST=1;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0032;VT=SNP;RSQ=1;ERATE=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0.01,-1.67,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649210 . C T 100 PASS RSQ=0.0664;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0001;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.97,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649211 rs139388622 G A 100 PASS ERATE=0.0004;RSQ=0.6889;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1;THETA=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.56,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649223 . G C 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649273 rs56372991 C T 100 PASS RSQ=0.9655;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0019;AC=4;ERATE=0.0003;AVGPOST=0.9999;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649297 rs36098069 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.996;THETA=0.0008;VT=SNP;AVGPOST=0.9998;AC=63;ERATE=0.0003;LDAF=0.0289;AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50649355 rs149667170 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0043;AVGPOST=0.9996;VT=SNP;AC=9;ERATE=0.0003;RSQ=0.963;THETA=0.0003;AF=0.0041;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649384 . G C 100 PASS RSQ=0.8036;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649491 rs145484074 A G 100 PASS ERATE=0.0004;RSQ=0.9393;AN=2184;VT=SNP;AA=A;AC=9;SNPSOURCE=LOWCOV;LDAF=0.0045;THETA=0.0003;AVGPOST=0.9992;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-3.02,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50649515 rs185004614 G C 100 PASS ERATE=0.0004;AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8231;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-2.76,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50649535 rs139443972 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9156;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.08,-5 0|0:0:-0,-2.21,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50649545 rs4838863 A G 100 PASS AC=2054;RSQ=0.9963;AA=G;AN=2184;LDAF=0.9396;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.94;ASN_AF=0.92;AMR_AF=0.94;AFR_AF=1;EUR_AF=0.92 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-4.4,-0 1|1:2:-5,-2.57,-0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50649560 rs7292228 C G 100 PASS AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9981;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9967;ERATE=0.0003;LDAF=0.4042;AC=885;AF=0.41;ASN_AF=0.4;AMR_AF=0.38;AFR_AF=0.45;EUR_AF=0.4 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:-0,-2.51,-5 0|1:1:-5,-0.03,-1.13 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50649641 rs76840692 T C 100 PASS AA=T;AN=2184;AC=13;AVGPOST=0.9997;THETA=0.0005;RSQ=0.9781;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.006;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-2.62,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-3.04,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-2.09,-5 22 50649653 rs12169305 G A 100 PASS AC=35;THETA=0.0004;RSQ=0.9761;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0162;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.94,-5 0|0:0:-0,-2.59,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.39,-5 22 50649684 rs145164480 C T 100 PASS AA=C;THETA=0.0004;AN=2184;RSQ=0.9088;VT=SNP;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.36,-5 22 50649710 rs147582251 C T 100 PASS AA=C;AN=2184;LDAF=0.004;AC=8;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9267;THETA=0.0003;AVGPOST=0.9992;AF=0.0037;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.95,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.01,-1.59,-5 22 50649711 rs142188546 G A 100 PASS ERATE=0.0004;THETA=0.0002;RSQ=0.6897;AA=g;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0,-3.22,-5 0|0:0:-0,-2.06,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.58,-5 22 50649870 rs59201916 G A 100 PASS AC=47;LDAF=0.0218;RSQ=0.9707;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9982;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.25,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.11,-5 22 50649871 rs56850037 A T 100 PASS AC=47;AVGPOST=0.9983;LDAF=0.0218;RSQ=0.9707;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.3,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.12,-5 22 50649908 rs143112707 G C 100 PASS AC=7;LDAF=0.0033;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9677;THETA=0.0003;AF=0.0032;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0,-2.89,-5 0|0:0:-0,-2.65,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.01,-1.82,-5 22 50649966 rs151223323 A G 100 PASS THETA=0.0002;AN=2184;AVGPOST=0.9996;VT=SNP;AA=A;LDAF=0.0006;RSQ=0.7318;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2.45,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.04,-1.09,-5 22 50650030 rs184824800 T C 100 PASS THETA=0.0002;AA=T;AN=2184;VT=SNP;RSQ=0.8939;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AVGPOST=0.9995;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.19,-0.46,-2.17 22 50650050 rs140419084 A G 100 PASS ERATE=0.0004;AN=2184;AC=16;VT=SNP;RSQ=0.8625;LDAF=0.0072;AA=A;AVGPOST=0.9973;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.19,-0.46,-2.17 22 50650172 rs150374537 G A 100 PASS RSQ=0.9806;AA=G;AN=2184;VT=SNP;AC=66;SNPSOURCE=LOWCOV;LDAF=0.0306;ERATE=0.0003;AVGPOST=0.9987;THETA=0.0003;AF=0.03;AMR_AF=0.02;AFR_AF=0.12 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.02,-1.29,-5 0|0:0:-0.48,-0.48,-0.48 22 50650226 rs188607584 G C 100 PASS ERATE=0.0005;AVGPOST=0.9977;RSQ=0.3283;AA=G;AN=2184;THETA=0.0005;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 22 50650275 rs180743974 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=3;THETA=0.0036;RSQ=0.7236;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.14,-0.56,-2.71 0|0:0:-0.14,-0.57,-3.42 0|0:0:-0.11,-0.64,-3.66 0|0:0:-0.48,-0.48,-0.48 22 50650276 rs138254804 G A 100 PASS ERATE=0.0005;THETA=0.0002;LDAF=0.0035;AA=G;AN=2184;VT=SNP;AC=5;RSQ=0.7341;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0.14,-0.56,-2.72 0|0:0:-0.14,-0.57,-3.42 0|0:0:-0.16,-0.52,-2.61 0|0:0:-0.48,-0.48,-0.48 22 50650418 rs75505866 C T 100 PASS ERATE=0.0004;AA=C;LDAF=0.0112;RSQ=0.8163;AN=2184;AVGPOST=0.9947;AC=20;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0:-0.02,-1.27,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0.07,-0.85,-5 22 50650419 rs113871714 A C 100 PASS THETA=0.0004;AN=2184;RSQ=0.5904;VT=SNP;AVGPOST=0.9971;AA=A;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;LDAF=0.0031;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0:-0.02,-1.31,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0.07,-0.84,-5 22 50650421 rs142742216 C T 100 PASS AA=C;AN=2184;AC=13;RSQ=0.9424;VT=SNP;AVGPOST=0.9991;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0:-0.02,-1.29,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.07,-0.85,-5 22 50650473 rs77350583 A C 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AC=95;LDAF=0.044;AA=A;RSQ=0.988;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.13;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-3.38,-5 0|0:0:-0,-3.1,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-3.44,-5 22 50650515 rs189177232 T G 100 PASS AA=T;AN=2184;VT=SNP;RSQ=0.8339;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0012;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-3.18,-5 22 50650597 rs5771237 G C 100 PASS AVGPOST=0.9977;AA=C;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.7047;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9955;AC=1542;AF=0.71;ASN_AF=0.76;AMR_AF=0.62;AFR_AF=0.89;EUR_AF=0.59 GT:DS:GL 1|0:1:-5,-0,-2.54 0|0:0:-0,-2.92,-5 1|1:2:-5,-1.83,-0.01 1|0:1:-0.18,-0.47,-2.44 1|0:1:-0.73,-0.09,-5 22 50650816 rs181852235 G A 100 PASS 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100 PASS RSQ=0.9345;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0045;THETA=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-2.84,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.37,-5 22 50652427 rs11703673 C T 100 PASS ERATE=0.0004;LDAF=0.2567;AA=C;AC=561;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9903;AVGPOST=0.9951;AF=0.26;ASN_AF=0.06;AMR_AF=0.32;AFR_AF=0.34;EUR_AF=0.32 GT:DS:GL 1|0:1:-3.13,-0,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-3.74,-5 1|0:1:-5,-0,-3.38 1|0:1:-5,0,-5 22 50652448 rs115167642 G A 100 PASS RSQ=0.9926;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;THETA=0.0024;AVGPOST=0.9999;LDAF=0.005;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.44,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-3.62,-5 22 50652546 rs5771238 A G 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AC=275;AA=A;RSQ=0.9922;SNPSOURCE=LOWCOV;AVGPOST=0.9978;LDAF=0.1263;AF=0.13;ASN_AF=0.33;AMR_AF=0.06;AFR_AF=0.04;EUR_AF=0.06 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CA C 305 PASS AC=12;ERATE=0.0004;LDAF=0.0058;THETA=0.0004;AN=2184;VT=INDEL;AVGPOST=0.9993;RSQ=0.9494;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-2.1,-33.5 0|0:0:0,0,0 0|0:0:0,-0.3,-4.7 0|0:0:0,-0.6,-9.6 0|0:0:0,0,0 22 50653688 rs139158744 C T 100 PASS AC=7;AA=C;RSQ=0.8816;AN=2184;LDAF=0.0037;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.07,-0.86,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.01,-1.89,-5 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.4,-5 22 50653858 rs149922172 G C 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=g;AN=2184;VT=SNP;AC=10;RSQ=0.8793;SNPSOURCE=LOWCOV;LDAF=0.005;THETA=0.0003;AF=0.0046;ASN_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.03,-1.11,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.1,-0.67,-5 22 50653895 rs909687 G C 100 PASS AC=1536;THETA=0.0002;AN=2184;LDAF=0.6998;VT=SNP;AA=c;ERATE=0.0048;AVGPOST=0.9802;SNPSOURCE=LOWCOV;RSQ=0.9659;AF=0.7;ASN_AF=0.75;AMR_AF=0.62;AFR_AF=0.87;EUR_AF=0.6 GT:DS:GL 1|0:1:-1.99,-0,-3.7 0|0:0:-0.04,-1.01,-5 1|1:2:-2.65,-0.44,-0.2 1|0:1:-5,-0,-4.7 0|0:0.25:-0.18,-0.47,-3.06 22 50653987 rs146520157 C T 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;RSQ=0.7132;VT=SNP;LDAF=0.0019;AA=c;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.19,-0.46,-2.32 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.89,-5 0|0:0:-0.2,-0.45,-2.1 22 50653988 rs191723907 G A 100 PASS ERATE=0.0004;RSQ=0.9105;AA=g;AN=2184;THETA=0.0005;VT=SNP;AC=9;AVGPOST=0.9991;SNPSOURCE=LOWCOV;LDAF=0.0045;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.9,-5 0|0:0:-0.19,-0.46,-2.15 22 50654153 . C T 100 PASS RSQ=0.9405;THETA=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AA=c;AVGPOST=0.9998;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654168 . C T 100 PASS ERATE=0.0004;RSQ=0.739;AN=2184;AVGPOST=0.9996;VT=SNP;AA=c;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654186 rs117539518 C T 100 PASS RSQ=0.9469;LDAF=0.0068;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=c;AC=14;ERATE=0.0003;THETA=0.0003;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654198 . A G 100 PASS AN=2184;RSQ=0.8455;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AA=a;ERATE=0.0003;AC=3;THETA=0.0003;LDAF=0.0017;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654204 rs184139976 G A 100 PASS ERATE=0.0004;RSQ=0.6746;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0006;AC=1;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.61,-5 0|0:0:-0,-2.79,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654253 . C T 100 PASS THETA=0.0002;RSQ=0.876;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654263 . T A 100 PASS AN=2184;THETA=0.0008;LDAF=0.001;VT=SNP;RSQ=0.7139;AVGPOST=0.9993;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AA=t;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654305 rs76359305 T C 100 PASS AC=12;RSQ=0.9886;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0056;ERATE=0.0003;AVGPOST=0.9999;AA=t;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654328 rs188153820 G A 100 PASS LDAF=0.0024;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9998;AC=5;RSQ=0.9671;ERATE=0.0003;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50654376 rs180991849 T A 100 PASS AN=2184;VT=SNP;LDAF=0.0019;RSQ=0.787;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;ERATE=0.0003;AA=t;AF=0.0018;ASN_AF=0.0035;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-1.97,-5 0|0:0:0,-5,-5 22 50654426 rs143479736 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0012;AC=2;RSQ=0.8496;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.48,-5 0|0:0:0,-5,-5 22 50654428 rs2294402 T G 100 PASS LDAF=0.4881;AA=T;AN=2184;AVGPOST=0.9967;VT=SNP;AC=1067;RSQ=0.9946;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.49;ASN_AF=0.5;AMR_AF=0.41;AFR_AF=0.65;EUR_AF=0.41 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|1:1:-5,0,-5 1|0:1:-4,-0,-5 1|0:1:-5,0,-5 22 50654456 rs146798618 G A 100 PASS THETA=0.0002;AA=G;AN=2184;AC=8;AVGPOST=0.9997;LDAF=0.0037;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9652;ERATE=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.09,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-4.4,-5 22 50654555 rs80216828 C T 100 PASS LDAF=0.0234;AA=C;RSQ=0.9651;AN=2184;AVGPOST=0.9975;VT=SNP;AC=51;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.02;ASN_AF=0.02;AMR_AF=0.1;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 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ERATE=0.0004;AVGPOST=0.9986;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=3;RSQ=0.642;THETA=0.0003;LDAF=0.0017;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.19,-0.46,-2.71 0|0:0:-0.01,-1.93,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.17,-0.5,-2.85 0|0:0:-0.1,-0.67,-5 22 50654848 rs181675219 C T 100 PASS LDAF=0.0021;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.8688;THETA=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.46,-2.76 0|0:0:-0,-2.5,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.54,-5 0|0:0.05:-0.04,-1.03,-5 22 50654888 rs2038049 G C 100 PASS LDAF=0.3941;THETA=0.0004;AA=G;AN=2184;RSQ=0.9818;VT=SNP;ERATE=0.0011;AVGPOST=0.9886;SNPSOURCE=LOWCOV;AC=861;AF=0.39;ASN_AF=0.38;AMR_AF=0.38;AFR_AF=0.44;EUR_AF=0.39 GT:DS:GL 1|0:1:-2.62,-0.12,-0.62 0|0:0:-0,-2.21,-5 0|1:1:-0.13,-0.61,-2.22 1|0:1:-3.8,-0,-3.7 1|0:1:-5,-0,-3.59 22 50654902 rs139351367 C T 100 PASS AA=C;THETA=0.0002;LDAF=0.0068;AN=2184;VT=SNP;AVGPOST=0.9953;RSQ=0.7377;SNPSOURCE=LOWCOV;ERATE=0.0015;AC=11;AF=0.01;ASN_AF=0.0035;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.15,-0.54,-3.34 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.02,-1.45,-5 0|0:0:-0.11,-0.67,-5 22 50654906 rs143358267 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=24;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.0108;RSQ=0.8905;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.15,-0.54,-3.32 0|0:0:-0.07,-0.85,-4.4 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.01,-1.52,-5 0|0:0:-0.18,-0.46,-3 22 50654963 rs147532433 C T 100 PASS RSQ=0.6578;AA=C;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.46,-2.77 0|0:0:-0.12,-0.62,-3.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.28,-5 22 50654990 rs75962939 G A 100 PASS ERATE=0.0004;AC=28;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8903;SNPSOURCE=LOWCOV;AVGPOST=0.9961;LDAF=0.0135;AF=0.01;ASN_AF=0.05 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.2,-0.44,-2.06 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.01,-1.88,-5 0|0:0:-0,-2.51,-5 22 50655098 rs2272851 A G 100 PASS RSQ=0.9966;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.7148;VT=SNP;AC=1563;AVGPOST=0.998;ERATE=0.0003;AF=0.72;ASN_AF=0.75;AMR_AF=0.63;AFR_AF=0.9;EUR_AF=0.61 GT:DS:GL 1|0:1:-5,-0,-2.43 0|0:0:-0,-2.01,-5 1|1:2:-4.7,-0.26,-0.35 1|0:1:-3.8,-0,-3.85 1|0:1:-5,0,-5 22 50655196 . G A 100 PASS RSQ=0.0498;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0001;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.99,-5 0|0:0:-0,-2.37,-5 0|0:0:-0,-2.74,-5 0|0:0:-0,-2.05,-5 22 50655230 rs186097492 G T 100 PASS THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.8177;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-3.19,-5 0|0:0:-0,-3.15,-5 22 50655320 . C T 100 PASS AA=C;AN=2184;RSQ=0.7534;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0,-3.66,-5 0|0:0:0,-5,-5 22 50655329 rs73435262 C T 100 PASS ERATE=0.0005;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9796;VT=SNP;AVGPOST=0.9991;LDAF=0.0193;AC=42;THETA=0.0003;AF=0.02;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.07;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.38,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 22 50655344 . C T 100 PASS ERATE=0.0004;RSQ=0.5562;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;LDAF=0.002;AVGPOST=0.9978;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.15,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.08,-0.79,-4.7 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.49,-5 22 50655355 . A G 100 PASS ERATE=0.0013;RSQ=0.6246;AN=2184;AC=6;VT=SNP;AA=A;SNPSOURCE=EXOME;LDAF=0.0051;AVGPOST=0.9949;THETA=0.0003;AF=0.0027;ASN_AF=0.0017;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.09,-0.72,-2.97 0|0:0:-0.02,-1.28,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.7,-5 22 50655370 rs77548543 C A 100 PASS THETA=0.0023;AA=C;RSQ=0.7437;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9942;VT=SNP;AC=15;ERATE=0.0003;LDAF=0.0082;AF=0.01;ASN_AF=0.02;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:-0.05,-1,-4.4 0|0:0:-0.12,-0.61,-3.06 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655389 . A C 100 PASS THETA=0.0002;RSQ=0.5469;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;AVGPOST=0.9988;LDAF=0.0011;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.78,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.11,-0.64,-3.27 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655468 . G A 100 PASS LDAF=0.0021;RSQ=0.6081;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9976;SNPSOURCE=EXOME;AC=4;ERATE=0.0007;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-3.12,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655487 rs181226117 C T 100 PASS LDAF=0.0009;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.4628;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-2.99,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655488 rs34195747 G A 100 PASS ERATE=0.0005;LDAF=0.0021;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;RSQ=0.8483;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.04,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655494 . C T 100 PASS AA=C;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AVGPOST=0.9987;AC=3;THETA=0.0003;RSQ=0.7938;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.32,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655528 . G A 100 PASS ERATE=0.0004;THETA=0.0002;RSQ=0.8519;AA=G;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.89,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655543 rs34163881 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9138;AC=8;LDAF=0.0037;VT=SNP;ERATE=0.0003;THETA=0.0003;AVGPOST=0.9992;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.49,-5 0|1:1:-5,-0,-4.7 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655628 . C T 100 PASS LDAF=0.0013;AA=C;THETA=0.0002;AN=2184;RSQ=0.6348;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AVGPOST=0.9987;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.02,-1.44,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655669 . C T 100 PASS LDAF=0.0027;AA=C;AN=2184;VT=SNP;AVGPOST=0.9969;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;RSQ=0.5851;THETA=0.0003;AF=0.0014;ASN_AF=0.0035;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.64,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.22,-0.46,-1.25 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655676 rs2272852 G A 100 PASS ERATE=0.0004;RSQ=0.9632;LDAF=0.0273;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=58;AVGPOST=0.9974;THETA=0.0003;AF=0.03;ASN_AF=0.04;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.93,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 22 50655700 rs17013238 G A 100 PASS THETA=0.0009;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=67;LDAF=0.0308;ERATE=0.0003;AVGPOST=0.9995;AF=0.03;AMR_AF=0.02;AFR_AF=0.12 GT:DS:GL 0|0:0:-0,-3.06,-5 0|0:0:-0,-2.51,-5 0|0:0:-0.08,-0.79,-4.7 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655722 rs144505070 C T 100 PASS ERATE=0.0004;RSQ=0.9325;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=5;LDAF=0.0025;AVGPOST=0.9995;THETA=0.0003;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.78,-0.08,-5 0|0:0:-0.02,-1.26,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655723 rs148419153 G A 100 PASS LDAF=0.0052;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9702;AC=11;ERATE=0.0003;THETA=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.02,-1.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655736 rs144100029 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;AC=1;RSQ=0.6941;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.86,-5 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655758 . C T 100 PASS LDAF=0.0004;AA=C;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.2438;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AVGPOST=0.9992;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655781 . G A 100 PASS AC=7;LDAF=0.0033;THETA=0.0004;AA=G;AN=2184;RSQ=0.9799;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655799 rs146013649 C T 100 PASS LDAF=0.0086;AA=C;AC=18;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9989;ERATE=0.0003;RSQ=0.9489;THETA=0.0003;AF=0.01;ASN_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655815 rs139913333 C T 100 PASS AC=7;LDAF=0.0033;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9989;ERATE=0.0003;RSQ=0.8931;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0.05:-0.4,-0.22,-5 0|0:0:-0,-2.14,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50655822 rs2272853 C T 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=104;VT=SNP;RSQ=0.9662;LDAF=0.0495;ERATE=0.0003;AVGPOST=0.9951;AF=0.05;ASN_AF=0.17;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.28,-5 0|0:0:-0,-2.6,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50655848 rs185883369 C T 100 PASS RSQ=0.9336;AA=C;THETA=0.0004;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.51,-5 0|0:0:-0,-1.95,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.66,-5 22 50655980 rs143516483 T A 100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;RSQ=0.552;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0.12,-0.61,-2.37 0|0:0:-0.13,-0.59,-3.62 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.53,-5 22 50656034 rs113121446 C T 100 PASS RSQ=0.9917;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;AC=41;LDAF=0.0189;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-3.14,-5 0|0:0:-0,-2.24,-5 0|0:0:-0,-2.94,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.01,-1.76,-5 22 50656043 rs115016508 C T 100 PASS AA=C;AN=2184;AC=8;RSQ=0.9905;LDAF=0.0037;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.11,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.02,-1.42,-5 22 50656053 rs2281116 T A 100 PASS LDAF=0.1841;AA=T;AN=2184;RSQ=0.9977;THETA=0.0005;VT=SNP;AC=400;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.18;ASN_AF=0.24;AMR_AF=0.21;AFR_AF=0.07;EUR_AF=0.2 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.31,-5 0|0:0:-0.05,-1,-5 22 50656072 rs2281117 C A 100 PASS THETA=0.0009;LDAF=0.043;AA=C;AC=94;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.999;AVGPOST=0.9999;AF=0.04;ASN_AF=0.13;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.47,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0,-1.98,-5 22 50656096 rs2038050 A G 100 PASS ERATE=0.0036;THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9979;RSQ=0.993;VT=SNP;AC=1888;SNPSOURCE=LOWCOV;LDAF=0.8641;AF=0.86;ASN_AF=0.85;AMR_AF=0.78;AFR_AF=0.86;EUR_AF=0.92 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-3.24,-0 1|1:2:-5,-2.22,-0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50656109 rs55955211 A C 100 PASS AN=2184;VT=SNP;AC=58;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0272;ERATE=0.0003;AVGPOST=0.9984;THETA=0.0003;RSQ=0.9804;AF=0.03;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.06 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.2,-5 0|0:0:-0,-4.1,-5 22 50656126 rs9628305 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=13;VT=SNP;LDAF=0.0059;THETA=0.0012;RSQ=1;ERATE=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.71,-5 0|0:0:0,-5,-5 22 50656147 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50656192 rs189757808 G A 100 PASS ERATE=0.0004;AVGPOST=1;LDAF=0.0009;RSQ=0.9768;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656247 . T C 100 PASS AA=T;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50656269 . G A 100 PASS ERATE=0.0004;RSQ=0.9336;THETA=0.0002;AA=G;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;AC=2;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.17,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 22 50656317 . C G 100 PASS AA=C;RSQ=0.876;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656322 . C T 100 PASS ERATE=0.0004;LDAF=0.0027;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=5;RSQ=0.8628;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.64,-2.51 0|0:0:-0.22,-0.46,-1.26 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656428 rs35381394 G A 100 PASS THETA=0.0032;AVGPOST=0.9864;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;ERATE=0.0032;VT=SNP;RSQ=0.9008;LDAF=0.0549;AC=114;AF=0.05;ASN_AF=0.0017;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0.1:-0.32,-0.43,-0.83 0|0:0.4:-2.42,-0.42,-0.21 0|0:0:0,-5,-5 1|0:1:-5,0,-5 22 50656430 . G A 100 PASS THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;SNPSOURCE=EXOME;LDAF=0.002;AC=4;ERATE=0.0003;RSQ=0.9025;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.32,-0.43,-0.81 0|0:0:-0.13,-0.6,-2.16 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656461 rs140456896 T C 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=0.8803;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.47,-5 0|0:0:-0,-2.83,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656534 rs35231253 C T 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0046;VT=SNP;AC=10;RSQ=0.9904;ERATE=0.0003;AVGPOST=0.9999;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656587 rs145252088 C G 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.7,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50656647 . G A 100 PASS AA=G;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9993;ERATE=0.0011;SNPSOURCE=EXOME;RSQ=0.7775;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.09,-0.73,-3.01 0|0:0:-0.05,-0.94,-3.92 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656650 rs142373772 C T 100 PASS RSQ=0.4282;AA=C;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0006;AVGPOST=0.9984;LDAF=0.0012;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.16,-5 0|0:0.05:-0.34,-0.44,-0.74 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656736 rs146532216 T C 100 PASS RSQ=0.9687;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=6;VT=SNP;AVGPOST=0.9998;LDAF=0.0028;ERATE=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0,-2.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656818 . G A 100 PASS AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.13,-0.59,-2.25 0|0:0:-0.08,-0.79,-3.21 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656942 rs147939592 G A 100 PASS AC=7;LDAF=0.0033;THETA=0.0002;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9684;VT=SNP;AVGPOST=0.9998;ERATE=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.12,-5 0|0:0:-0.02,-1.42,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656951 . C T 100 PASS LDAF=0.0009;THETA=0.0015;AN=2184;RSQ=0.8656;AVGPOST=0.9997;VT=SNP;AA=c;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0,-3.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50656995 . C T 100 PASS RSQ=0.9049;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.47,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657010 rs4838864 C G 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9767;VT=SNP;AC=2180;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.9981;AF=1;ASN_AF=1;AMR_AF=1;AFR_AF=1;EUR_AF=0.99 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-3.36,-0 1|1:2:-5,-5,0 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50657032 . G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657058 rs141728151 A C 100 PASS AN=2184;THETA=0.0005;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;RSQ=0.8457;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3,-5 0|0:0:-0,-3.38,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657059 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.19,-5 0|0:0:-0.15,-0.54,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657112 rs11912397 C T 100 PASS LDAF=0.0807;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9936;AC=177;ERATE=0.0003;AVGPOST=0.9987;AF=0.08;ASN_AF=0.02;AMR_AF=0.08;AFR_AF=0.06;EUR_AF=0.14 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0.79,-0.08 0|0:0:-0.13,-0.6,-2.16 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657118 rs55985560 G A 100 PASS AVGPOST=0.9994;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=10;RSQ=0.9419;LDAF=0.0048;ERATE=0.0003;AF=0.0046;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.13,-0.59,-2.13 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657176 . G C 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657189 rs78122876 G A 100 PASS RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=11;ERATE=0.0003;LDAF=0.0051;AVGPOST=0.9999;THETA=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657206 . C T 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657207 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657219 rs34104775 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.037;VT=SNP;AC=81;THETA=0.0006;RSQ=1;ERATE=0.0003;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657225 rs34562250 G A 100 PASS AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0142;THETA=0.0008;VT=SNP;AC=31;RSQ=0.9956;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;AFR_AF=0.06;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657310 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657381 rs148158491 C T 100 PASS ERATE=0.0005;LDAF=0.0009;AA=C;AN=2184;VT=SNP;RSQ=0.5571;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AVGPOST=0.9992;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.23,-0.45,-1.21 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657387 rs141156818 C T 100 PASS AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7497;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.15,-0.55,-1.9 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657419 rs150285388 G A 100 PASS ERATE=0.0004;LDAF=0.0016;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8782;AVGPOST=0.9995;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.03,-1.23,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50657469 rs137904544 C A 100 PASS AA=C;AVGPOST=0.9994;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;RSQ=0.7231;ERATE=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.13,-0.61,-2.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657610 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.28,-5 0|0:0:-0,-3.49,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657611 rs17013240 G A 100 PASS AVGPOST=1;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=57;VT=SNP;RSQ=1;LDAF=0.0261;ERATE=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0,-3.74,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657616 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657617 . G A 100 PASS AA=g;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50657666 . G A 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8316;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 22 50657803 rs142496306 G A 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;RSQ=0.8254;AC=3;LDAF=0.0017;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.71,-5 0|0:0.1:-0,-2.24,-5 0|0:0:-0.1,-0.7,-2.72 0|0:0:-0,-2.69,-5 0|0:0:-0,-3.25,-5 22 50657827 rs145964003 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;LDAF=0.0007;RSQ=0.4286;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.15,-5 0|0:0:-0.01,-1.52,-5 0|0:0.05:-1.58,-0.01,-2.89 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.8,-5 22 50657854 rs188946019 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0019;RSQ=0.8078;SNPSOURCE=LOWCOV;THETA=0.0016;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-3.44,-5 0|0:0:-0.08,-0.79,-4.1 0|0:0:-0.14,-0.56,-3.28 0|0:0:0,-5,-5 0|0:0:-0,-2.79,-5 22 50657875 rs76633938 G A 100 PASS LDAF=0.0131;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9626;AC=27;ERATE=0.0003;AVGPOST=0.9984;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.9,-5 0|0:0:-0,-3.7,-5 22 50657884 rs79022493 G T 100 PASS ERATE=0.0005;LDAF=0.0078;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=16;VT=SNP;RSQ=0.9104;AVGPOST=0.9982;AF=0.01;ASN_AF=0.03 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0,-3.05,-5 0|0:0:-0,-4.1,-5 22 50657962 rs191978159 C G 100 PASS AA=C;AN=2184;VT=SNP;LDAF=0.0034;AVGPOST=0.9969;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;THETA=0.0003;RSQ=0.6987;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.73,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-4.22,-5 0|0:0:-0,-4,-5 22 50657978 rs141711240 T C 100 PASS LDAF=0.0016;RSQ=0.8552;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=3;AA=t;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.99,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50657982 rs144625530 C T 100 PASS THETA=0.0002;AN=2184;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9876;VT=SNP;AC=22;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50658018 rs115789722 G A 100 PASS AC=12;ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0056;SNPSOURCE=LOWCOV;AVGPOST=0.9995;RSQ=0.9582;AF=0.01;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.2,-0.48,-1.46 0|0:0:-0.08,-0.79,-3.21 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658033 . C T 100 PASS LDAF=0.0009;THETA=0.0023;AA=C;AN=2184;RSQ=0.6468;VT=SNP;AVGPOST=0.9991;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.61,-2.37 0|0:0:-0.01,-1.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658035 . G A 100 PASS RSQ=0.9336;AA=G;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AVGPOST=0.9999;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.62,-2.39 0|0:0:-0,-2.2,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658045 rs34617177 C T 100 PASS RSQ=0.9655;AVGPOST=0.9986;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=37;LDAF=0.0168;VT=SNP;ERATE=0.0003;AF=0.02;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0:-0,-2.2,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658053 rs6537642 A G 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9732;LDAF=0.9745;VT=SNP;AC=2130;ERATE=0.0006;AVGPOST=0.9984;AF=0.98;ASN_AF=1;AMR_AF=0.95;AFR_AF=1;EUR_AF=0.95 GT:DS:GL 1|1:2:-5,-5,0 1|1:1.8:-0.17,-0.52,-1.76 1|1:2:-5,-2.18,-0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50658082 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-3.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658099 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-2.63,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658161 . C T 100 PASS RSQ=0.0498;AA=C;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0001;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.16,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658162 . G A 100 PASS RSQ=0.7124;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-2.13,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658165 rs142798996 G A 100 PASS RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;AC=23;LDAF=0.0107;ERATE=0.0003;THETA=0.0003;AF=0.01;ASN_AF=0.03;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-2.03,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658170 . T C 100 PASS AVGPOST=1;LDAF=0.0004;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AA=t;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.35,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658203 rs115418729 C A 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;VT=SNP;AVGPOST=0.9998;RSQ=0.974;LDAF=0.0028;ERATE=0.0003;THETA=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658244 rs183500899 C G 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658253 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658260 rs187343849 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.8178;AVGPOST=0.9998;LDAF=0.0006;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658261 rs56036519 G A 100 PASS AC=12;RSQ=0.9886;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0056;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.66,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658274 rs2272854 C G 100 PASS THETA=0.0009;AA=C;AVGPOST=0.9946;AN=2184;LDAF=0.3845;VT=SNP;AC=844;ERATE=0.0019;RSQ=0.9912;SNPSOURCE=LOWCOV;AF=0.39;ASN_AF=0.38;AMR_AF=0.36;AFR_AF=0.4;EUR_AF=0.39 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|1:1:-0.87,-0.06,-5 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50658319 rs114413694 C T 100 PASS AC=7;AVGPOST=1;AA=C;AN=2184;LDAF=0.0032;VT=SNP;THETA=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9947;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.19,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658339 . G C 100 PASS RSQ=0.9049;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658357 rs76476219 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=40;RSQ=0.9905;LDAF=0.0186;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.02;ASN_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658424 rs11703226 T C 100 PASS AVGPOST=0.9977;RSQ=0.9963;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;LDAF=0.425;VT=SNP;AC=929;ERATE=0.0086;AF=0.43;ASN_AF=0.38;AMR_AF=0.42;AFR_AF=0.46;EUR_AF=0.44 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50658430 . C T 100 PASS LDAF=0.0004;AA=C;AN=2184;RSQ=0.8551;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658466 rs192294480 C T 100 PASS AA=C;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50658467 rs183909336 G A 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9844;VT=SNP;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658494 rs5771241 C A 100 PASS ERATE=0.0104;AVGPOST=0.9957;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.1785;AA=A;AC=385;RSQ=0.9883;THETA=0.0003;AF=0.18;ASN_AF=0.29;AMR_AF=0.17;AFR_AF=0.04;EUR_AF=0.18 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0,-3.44,-5 0|0:0.05:-0,-3.12,-5 0|0:0:-0,-2.47,-5 0|0:0:-0,-4.7,-5 22 50658501 rs9617119 A G 100 PASS RSQ=0.9806;AN=2184;AVGPOST=0.9883;VT=SNP;ERATE=0.0162;AA=A;SNPSOURCE=LOWCOV;LDAF=0.3674;AC=801;THETA=0.0003;AF=0.37;ASN_AF=0.21;AMR_AF=0.42;AFR_AF=0.43;EUR_AF=0.42 GT:DS:GL 1|0:1:-5,-0,-4.4 0|0:0:-0,-2.84,-5 0|1:1:-0.31,-0.29,-5 1|0:1:-4.22,-0,-2.15 0|0:0:-0,-3.92,-5 22 50658561 rs187156164 C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0016;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.08,-0.77,-3.07 0|0:0:-0,-3.44,-5 0|0:0:0,-5,-5 22 50658570 rs17248273 A G 100 PASS AVGPOST=0.9936;AN=2184;THETA=0.0001;VT=SNP;AC=883;LDAF=0.4047;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0087;RSQ=0.99;AF=0.4;ASN_AF=0.38;AMR_AF=0.37;AFR_AF=0.48;EUR_AF=0.39 GT:DS:GL 1|0:1:-5,0,-5 0|0:0.2:-0.27,-0.33,-5 0|1:1:-4.4,-0.19,-0.46 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50658615 rs192576518 G A 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.79,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50658686 rs184425523 C T 100 PASS ERATE=0.0004;AVGPOST=1;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658695 rs150838239 C G 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658698 rs5771107 T A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=380;LDAF=0.1748;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.9984;AF=0.17;ASN_AF=0.24;AMR_AF=0.2;AFR_AF=0.09;EUR_AF=0.17 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658847 . A G 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.8098;AA=A;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.93,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.08,-0.8,-3.21 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50658885 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.04,-1.03,-4.7 0|0:0:-0.03,-1.2,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.76,-5 22 50658906 rs182155017 T C 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0,-2.5,-5 0|0:0:0,-5,-5 0|0:0:-0,-1.98,-5 22 50659033 . A G 100 PASS ERATE=0.0004;LDAF=0.0013;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AA=a;RSQ=0.897;AC=3;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659056 rs140699312 G A 100 PASS ERATE=0.0005;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;AVGPOST=0.9996;VT=SNP;LDAF=0.0029;RSQ=0.9357;AF=0.0027;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.14,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 22 50659082 . G A 100 PASS AA=g;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-3.92,-5 22 50659094 rs17248287 C T 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=26;VT=SNP;AA=c;RSQ=0.9833;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;LDAF=0.0121;AF=0.01;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 22 50659095 rs144750345 G A 100 PASS THETA=0.0002;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.894;ERATE=0.0003;LDAF=0.0012;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 22 50659149 . G A 100 PASS THETA=0.0014;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AA=N;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50659275 rs61745994 C T 100 PASS LDAF=0.0133;RSQ=0.878;AN=2184;AC=26;VT=SNP;AA=-;ERATE=0.002;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.996;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.72,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.51,-5 22 50659292 rs3747943 C T 100 PASS AN=2184;VT=SNP;AC=10;LDAF=0.0056;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0012;AVGPOST=0.9961;THETA=0.0003;RSQ=0.7235;AF=0.0046;ASN_AF=0.0035;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.22,-5 0|0:0:-0,-2.93,-5 0|0:0:-0,-2.31,-5 0|0:0:-0,-2.57,-5 0|0:0:-0.15,-0.53,-4 22 50659329 . G A 100 PASS AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.7246;LDAF=0.0007;AA=-;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.03,-5 0|0:0:-0,-2.91,-5 0|0:0:-0,-2.46,-5 22 50659341 rs181687065 C T 100 PASS ERATE=0.0004;RSQ=0.6563;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;AVGPOST=0.9991;AA=-;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659347 rs73893142 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;AC=97;AA=-;RSQ=0.997;ERATE=0.0003;LDAF=0.0445;AF=0.04;AMR_AF=0.02;AFR_AF=0.18 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659380 rs17013247 G A 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0006;LDAF=0.01;AC=21;RSQ=0.9696;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659386 rs116961572 G A 100 PASS ERATE=0.0004;RSQ=0.6555;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659480 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659481 rs61739385 G A 100 PASS ERATE=0.0004;AVGPOST=1;RSQ=0.9966;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0064;AC=14;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659500 . A C 100 PASS LDAF=0.0004;AN=2184;THETA=0.0005;RSQ=0.8999;VT=SNP;SNPSOURCE=EXOME;AC=1;AA=a;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659548 rs145410588 G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659595 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659598 rs149231425 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=36;ERATE=0.0003;LDAF=0.0164;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659599 rs117613659 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659613 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0029;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659690 rs185642293 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659696 rs115728769 C G 100 PASS RSQ=0.9859;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9998;AC=11;ERATE=0.0003;LDAF=0.0051;THETA=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50659788 . C A 100 PASS THETA=0.0009;AA=C;RSQ=0.8255;AN=2184;AVGPOST=0.9996;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;LDAF=0.0008;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.36,-5 0|0:0:-0,-2.66,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 22 50659796 . C T 100 PASS RSQ=0.8338;AN=2184;THETA=0.0008;VT=SNP;AA=c;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-1.97,-5 0|0:0:-0,-2.13,-5 0|0:0:-0,-2.89,-5 0|0:0:0,-5,-5 22 50659797 rs143388326 G A 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.8731;LDAF=0.0011;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.65,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0,-3.34,-5 0|0:0:0,-5,-5 22 50659874 . C G 100 PASS AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;LDAF=0.0011;ERATE=0.0003;RSQ=0.8435;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.98,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-4.7,-5 22 50660043 . G A 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0016;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660122 . G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.24,-5 0|0:0:-0,-2.6,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660137 rs34455105 G A 100 PASS AVGPOST=0.9977;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0347;VT=SNP;RSQ=0.9717;AC=75;ERATE=0.0003;AF=0.03;ASN_AF=0.0017;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|1:1:-5,-0,-3 0|0:0:-0.13,-0.59,-2.11 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660176 . G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.38,-5 0|0:0:-0.04,-1.01,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660214 rs147989796 C G 100 PASS THETA=0.0009;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=10;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;LDAF=0.0045;AF=0.0046;AMR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.08,-5 0|0:0:-0,-2.63,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660296 . G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.8138;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.84,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660298 . C G 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;RSQ=0.9768;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660301 rs139343360 G C 100 PASS RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.0028;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0027;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660341 rs180684296 G A 100 PASS AVGPOST=1;LDAF=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.95;VT=SNP;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660437 . G T 100 PASS AVGPOST=1;LDAF=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.16,-0.51,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660498 . G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660549 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;THETA=0.001;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660581 . C A 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;RSQ=0.9768;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50660611 rs77274938 C T 100 PASS AVGPOST=1;AA=C;LDAF=0.0256;THETA=0.0004;AN=2184;VT=SNP;AC=56;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9991;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660771 rs2294403 G A 100 PASS AVGPOST=1;AA=g;AN=2184;AC=26;VT=SNP;LDAF=0.0119;RSQ=0.9981;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.62,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660773 rs185994692 A C 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0012;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-2.69,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660896 . T C 100 PASS AVGPOST=1;AA=T;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50660972 rs144692967 G A 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50661058 rs138563998 G A 100 PASS AVGPOST=1;LDAF=0.0036;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=8;THETA=0.0005;VT=SNP;RSQ=0.994;ERATE=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50661146 rs191193843 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.12,-0.61,-3.07 0|0:0:-0,-3.15,-5 0|0:0:-0,-3.47,-5 22 50661304 rs150759038 T A 100 PASS THETA=0.0004;LDAF=0.0047;AA=T;AN=2184;VT=SNP;AC=10;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9812;AF=0.0046;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-2.66,-5 0|0:0:-0.17,-0.5,-2.84 0|0:0:-0.06,-0.91,-5 22 50661496 rs139144619 C T 100 PASS THETA=0.0009;RSQ=0.8655;AA=C;AN=2184;AC=6;AVGPOST=0.999;VT=SNP;LDAF=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0.2,-0.44,-1.98 22 50661501 rs9617120 G A 100 PASS ERATE=0.0004;LDAF=0.0021;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=4;RSQ=0.8957;AVGPOST=0.9995;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.56,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0,-2,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.2,-0.44,-1.98 22 50661579 rs183870870 G C 100 PASS LDAF=0.0009;RSQ=0.5852;THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 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RSQ=0.722;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.06,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.06,-0.86,-5 22 50661724 rs144121849 A C 100 PASS AN=2184;AC=8;LDAF=0.0037;THETA=0.0005;VT=SNP;AA=A;RSQ=0.9824;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0,-3.02,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.03,-1.13,-5 22 50661751 rs140736988 G T 100 PASS ERATE=0.0004;LDAF=0.0016;AA=G;AN=2184;RSQ=0.5736;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.08,-0.78,-4.7 0|0:0:-0.01,-1.68,-5 0|0:0:-0.18,-0.46,-3.02 22 50661765 rs76091185 C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.998;AC=54;RSQ=0.9697;SNPSOURCE=LOWCOV;LDAF=0.0253;ERATE=0.0003;AF=0.02;ASN_AF=0.02;AMR_AF=0.1;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.12,-0.61,-3.14 0|0:0:-0.03,-1.2,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.18,-0.47,-3.04 22 50661869 rs5771242 T C 100 PASS ERATE=0.0005;AA=C;AC=1788;AN=2184;VT=SNP;LDAF=0.8176;SNPSOURCE=LOWCOV;RSQ=0.9908;THETA=0.0003;AVGPOST=0.9965;AF=0.82;ASN_AF=0.82;AMR_AF=0.71;AFR_AF=0.98;EUR_AF=0.77 GT:DS:GL 1|1:2:-5,-0.67,-0.11 1|0:1:-4.22,-0,-3.03 1|1:2:-5,-1,-0.05 1|0:1:-1.79,-0.02,-1.64 1|0:1:-2.49,-0.02,-1.32 22 50661879 rs182928306 C G 100 PASS LDAF=0.0021;AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.8796;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.12,-0.61,-3.1 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.19,-0.46,-2.16 22 50661881 rs147906724 C T 100 PASS AC=17;AA=C;AN=2184;RSQ=0.949;AVGPOST=0.999;LDAF=0.0079;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.12,-0.62,-3.14 0|0:0:-0.11,-0.64,-4 0|0:0:-0.19,-0.46,-2.16 22 50661893 rs139931125 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.5358;AVGPOST=0.9981;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.07,-0.82,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50661900 rs142870381 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5044;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50661944 rs58886922 G A 100 PASS ERATE=0.0004;RSQ=0.9855;AVGPOST=0.9994;AA=G;AN=2184;AC=45;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;LDAF=0.0207;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.09,-0.74,-3.8 0|0:0:-0.45,-0.47,-0.51 0|0:0:-0.03,-1.17,-5 0|0:0:-0.12,-0.63,-4 22 50662000 rs186893961 G C 100 PASS THETA=0.005;AA=G;AN=2184;VT=SNP;RSQ=0.5733;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9978;ERATE=0.0006;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.19,-5 0|0:0:-0.48,-0.48,-0.48 22 50662017 rs141034941 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;THETA=0.0002;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8043;LDAF=0.0031;AF=0.0027;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.12,-0.63,-4 0|0:0:-0.01,-1.71,-5 0|0:0:-0.15,-0.53,-2.97 22 50662037 rs5771243 G A 100 PASS AC=848;THETA=0.0004;AA=G;AN=2184;LDAF=0.387;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.983;RSQ=0.9724;AF=0.39;ASN_AF=0.38;AMR_AF=0.37;AFR_AF=0.42;EUR_AF=0.39 GT:DS:GL 1|0:1:-1.52,-0.01,-5 0|0:0:-0.1,-0.68,-3.47 0|1:1:-1.93,-0.01,-3.85 1|0:1:-1.25,-0.03,-5 1|0:1:-2.09,-0.07,-0.87 22 50662290 rs146869052 G C 100 PASS AC=12;LDAF=0.0053;RSQ=0.9682;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.52,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.01,-1.76,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.71,-5 22 50662440 rs192708475 T C 100 PASS AA=T;AN=2184;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.06,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.57,-5 0|0:0:-0,-2.94,-5 22 50662470 rs115824792 G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;LDAF=0.0096;AC=21;ERATE=0.0003;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-2.91,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 22 50662531 rs184277113 C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0031;VT=SNP;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.34,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662558 rs187563075 G A 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.52,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662586 . G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662633 rs192806961 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.854;AVGPOST=0.9998;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662705 . T C 100 PASS AVGPOST=1;AA=T;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662731 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662860 rs113592725 A G 100 PASS AVGPOST=1;LDAF=0.0027;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0077;AC=6;VT=SNP;AA=A;RSQ=1;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662925 . C G 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662928 . G A 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662959 rs140814808 C T 100 PASS THETA=0.0021;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662984 rs35446002 G A 100 PASS THETA=0.0021;AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0046;VT=SNP;AC=10;RSQ=0.9952;ERATE=0.0003;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50662986 rs144571651 G A 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50663015 rs138592738 G A 100 PASS AVGPOST=1;LDAF=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.95;VT=SNP;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50663060 rs189601358 G C 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0023;AC=5;RSQ=1;ERATE=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50663306 rs181513987 C A 100 PASS AA=C;LDAF=0.0042;AN=2184;VT=SNP;RSQ=0.5865;AC=5;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.17,-0.49,-2.72 0|0:0:-0.04,-1.1,-5 22 50663421 rs73187269 C T 100 PASS AA=C;AN=2184;RSQ=0.9732;VT=SNP;AC=176;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0812;AVGPOST=0.9949;THETA=0.0003;AF=0.08;ASN_AF=0.03;AMR_AF=0.08;AFR_AF=0.06;EUR_AF=0.13 GT:DS:GL 0|1:1:-4.22,-0,-3.28 1|0:1:-5,-0.01,-1.69 0|0:0:-0.03,-1.22,-5 0|0:0:-0.09,-0.74,-4.7 0|0:0:-0.07,-0.82,-5 22 50663492 rs5771244 A C 100 PASS AA=C;THETA=0.0002;AVGPOST=0.8968;LDAF=0.2263;AN=2184;ERATE=0.0031;RSQ=0.7708;VT=SNP;AC=442;SNPSOURCE=LOWCOV;AF=0.2;ASN_AF=0.26;AMR_AF=0.2;AFR_AF=0.14;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:0.85:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50663607 rs113516115 C G 100 PASS ERATE=0.0005;RSQ=0.8733;AVGPOST=0.9977;AA=C;AN=2184;AC=16;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.008;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.12,-0.63,-3.27 0|0:0:-0.04,-1.04,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.02,-1.35,-5 22 50663642 rs140313209 G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=14;AVGPOST=0.9959;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.7816;LDAF=0.0075;AF=0.01;ASN_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.18,-0.47,-2.26 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.06,-0.86,-5 22 50663786 rs77740560 G A 100 PASS ERATE=0.0004;LDAF=0.0404;AA=g;AN=2184;AVGPOST=0.9952;THETA=0.0005;VT=SNP;RSQ=0.9567;SNPSOURCE=LOWCOV;AC=86;AF=0.04;ASN_AF=0.12;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.24,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.02,-1.37,-5 22 50663912 rs143492517 G A 100 PASS AC=18;THETA=0.0002;AA=g;LDAF=0.0092;AN=2184;VT=SNP;RSQ=0.7712;AVGPOST=0.9948;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.87,-5 0|1:1:-5,-0.07,-0.81 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.06,-0.88,-5 22 50664065 rs115409671 A G 100 PASS RSQ=0.923;AVGPOST=0.976;THETA=0.0004;AN=2184;AC=283;LDAF=0.1305;VT=SNP;ERATE=0.013;AA=A;SNPSOURCE=LOWCOV;AF=0.13;ASN_AF=0.09;AMR_AF=0.09;AFR_AF=0.16;EUR_AF=0.16 GT:DS:GL 0|1:0.75:-0.03,-1.13,-5 1|0:1:-0.71,-0.09,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0,-2.23,-5 22 50664072 rs141721069 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9972;VT=SNP;AC=31;RSQ=0.918;SNPSOURCE=LOWCOV;LDAF=0.0139;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 1|0:1:-5,-0,-2.65 0|0:0:-0,-2.77,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-2.19,-5 22 50664076 rs150593229 G A 100 PASS ERATE=0.0004;THETA=0.0022;AA=G;AN=2184;RSQ=0.9246;VT=SNP;AC=31;AVGPOST=0.9973;SNPSOURCE=LOWCOV;LDAF=0.0138;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 1|0:1:-5,-0,-2.6 0|0:0:-0,-2.53,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-2.39,-5 22 50664202 rs189693106 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.38,-5 0|0:0:0,-5,-5 22 50664252 rs181249457 G A 100 PASS ERATE=0.0004;AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664312 . C G 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664351 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664381 . G A 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664402 . A G 100 PASS AVGPOST=1;THETA=0.0004;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664448 rs186759860 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0023;AC=5;RSQ=1;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664523 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664611 rs142499686 C T 100 PASS ERATE=0.0013;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0013;RSQ=0.8265;AVGPOST=0.9995;LDAF=0.0012;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664612 rs4838865 A G 100 PASS ERATE=0.0021;AC=1798;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;RSQ=0.9976;VT=SNP;LDAF=0.8227;AVGPOST=0.9992;AF=0.82;ASN_AF=0.83;AMR_AF=0.71;AFR_AF=0.98;EUR_AF=0.77 GT:DS:GL 1|1:2:-5,-5,0 1|0:1:-5,0,-5 1|1:2:-5,-5,0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50664618 . T C 100 PASS AVGPOST=1;AA=T;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664640 . G A 100 PASS RSQ=0.9181;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664646 . C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664683 . C T 100 PASS THETA=0.0048;AA=C;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664684 . G A 100 PASS LDAF=0.0013;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;RSQ=0.9427;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664735 . G A 100 PASS LDAF=0.0009;RSQ=0.9525;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;ERATE=0.0006;AC=2;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664797 rs139934957 C T 100 PASS AVGPOST=1;THETA=0.0026;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0023;AC=5;RSQ=1;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664798 . G A 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664801 . G A 100 PASS LDAF=0.0004;AA=G;AN=2184;THETA=0.0005;RSQ=0.8999;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50664818 . G A 100 PASS AVGPOST=1;LDAF=0.0009;AA=g;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;THETA=0.002;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50665126 rs147470039 T C 100 PASS ERATE=0.0004;AVGPOST=0.9963;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;RSQ=0.8217;VT=SNP;LDAF=0.0087;AC=15;THETA=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.66,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.13,-0.6,-2.15 0|0:0:-0.06,-0.89,-5 0|0:0:-0.09,-0.74,-5 22 50665128 rs186133442 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;RSQ=0.721;LDAF=0.002;SNPSOURCE=LOWCOV;THETA=0.0052;AVGPOST=0.9987;AC=3;AF=0.0014;ASN_AF=0.0035;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.51,-5 22 50665129 rs190965868 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0018;VT=SNP;THETA=0.0006;AVGPOST=0.9991;RSQ=0.7817;ERATE=0.0003;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.49,-5 22 50665137 rs182713525 C T 100 PASS LDAF=0.0024;RSQ=0.8938;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.014;AC=5;ERATE=0.0003;AVGPOST=0.9995;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.13,-0.6,-2.17 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-2.09,-5 22 50665287 . G C 100 PASS THETA=0.0039;RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-2.38,-5 0|0:0:-0.01,-1.88,-5 0|0:0:-0,-2.23,-5 22 50665306 rs139864746 C T 100 PASS AC=17;AVGPOST=0.9985;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.9448;LDAF=0.0085;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.13,-0.6,-2.18 0|0:0:-0,-2.13,-5 0|0:0:-0.03,-1.12,-5 22 50665341 rs186785232 G A 100 PASS ERATE=0.0005;RSQ=0.7735;THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0034;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.39,-5 0|0:0:-0.11,-0.65,-5 22 50665428 rs192038717 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0008;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.14,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-3.7,-5 22 50665446 . G A 100 PASS RSQ=0.9049;AA=G;AN=2184;VT=SNP;THETA=0.0027;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.96,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.72,-5 0|0:0:-0,-2.75,-5 22 50665467 rs114942206 C T 100 PASS RSQ=0.9063;AA=C;THETA=0.0044;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=4;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0017;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.63,-5 0|0:0:-0,-3.34,-5 0|0:0:-0,-3.59,-5 22 50665476 . A G 100 PASS AC=7;ERATE=0.0004;AN=2184;LDAF=0.0032;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=0.9863;AVGPOST=0.9999;THETA=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.55,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.47,-5 22 50665539 . C T 100 PASS LDAF=0.0009;RSQ=0.693;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AVGPOST=0.9992;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.3,-5 0|0:0:-0,-3.13,-5 0|0:0:-0,-3.09,-5 22 50665619 rs28574877 T C 100 PASS THETA=0.0004;AA=T;AN=2184;AC=8;AVGPOST=0.9997;VT=SNP;LDAF=0.0038;RSQ=0.9594;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.01,-1.66,-5 22 50665644 rs150018214 G A 100 PASS AC=7;AA=G;AN=2184;RSQ=0.9004;VT=SNP;LDAF=0.0034;THETA=0.0006;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AMR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.28,-5 0|0:0:-0,-3.28,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.01,-1.63,-5 22 50665776 rs730937 G A 100 PASS RSQ=0.9746;AVGPOST=0.9943;AA=G;AN=2184;VT=SNP;LDAF=0.0781;SNPSOURCE=LOWCOV;AC=168;THETA=0.0007;ERATE=0.0003;AF=0.08;ASN_AF=0.24;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0,-2.52,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0,-2.12,-5 22 50665778 rs144273765 A G 100 PASS RSQ=0.955;LDAF=0.0047;AN=2184;VT=SNP;AC=10;THETA=0.0011;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-2.39,-5 22 50665860 rs730936 T C 100 PASS THETA=0.0088;ERATE=0.0036;AA=T;AN=2184;VT=SNP;RSQ=0.9653;SNPSOURCE=LOWCOV;AC=487;AVGPOST=0.985;LDAF=0.2272;AF=0.22;ASN_AF=0.22;AMR_AF=0.24;AFR_AF=0.26;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-2.26,-5 1|0:1:-5,-0,-4.7 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.08,-5 22 50665862 rs148775609 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;THETA=0.0064;RSQ=0.6862;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.91,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-2.91,-5 22 50665863 rs142384028 C T 100 PASS AA=C;THETA=0.0004;RSQ=0.9609;LDAF=0.0066;AN=2184;VT=SNP;AC=14;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.95,-5 0|0:0:-0,-2.12,-5 0|0:0:-0,-2.39,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.96,-5 22 50665904 rs146881202 C T 100 PASS LDAF=0.0088;AA=C;AC=18;AN=2184;VT=SNP;AVGPOST=0.998;RSQ=0.9052;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0.1:-0.15,-0.54,-3.32 0|0:0:-0,-2.55,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-3.24,-5 22 50666087 rs62239325 T C 100 PASS ERATE=0.0005;RSQ=0.9308;AVGPOST=0.9903;THETA=0.0032;AA=T;AN=2184;LDAF=0.055;VT=SNP;AC=113;SNPSOURCE=LOWCOV;AF=0.05;AMR_AF=0.08;AFR_AF=0.0041;EUR_AF=0.11 GT:DS:GL 0|0:0:-0,-1.96,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.13,-0.59,-2.14 0|0:0:-0.05,-0.99,-5 1|0:1:-5,-0,-4.1 22 50666113 rs188370549 C T 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=C;THETA=0.0118;AN=2184;VT=SNP;RSQ=0.7854;LDAF=0.0029;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.16,-0.54,-1.89 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.03,-1.14,-5 22 50666210 rs77515604 G A 100 PASS RSQ=0.9589;AN=2184;THETA=0.0005;VT=SNP;AA=A;LDAF=0.0417;SNPSOURCE=LOWCOV;AC=90;ERATE=0.0006;AVGPOST=0.9958;AF=0.04;ASN_AF=0.12;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.66,-5 22 50666223 rs56133520 G A 100 PASS AA=G;AN=2184;ERATE=0.0009;THETA=0.0005;RSQ=0.9661;VT=SNP;AC=179;AVGPOST=0.993;LDAF=0.0837;SNPSOURCE=LOWCOV;AF=0.08;ASN_AF=0.06;AMR_AF=0.04;AFR_AF=0.04;EUR_AF=0.15 GT:DS:GL 0|1:1:-4.7,-0,-3.38 0|0:0.05:-0.44,-0.46,-0.54 0|0:0:-0.12,-0.6,-3.01 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.44,-5 22 50666284 rs192252360 C G 100 PASS AA=C;AVGPOST=0.9994;RSQ=0.9076;AN=2184;AC=6;VT=SNP;THETA=0.0033;LDAF=0.0026;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.84,-5 0|0:0:-0,-2.96,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0,-3.62,-5 22 50666399 . G A 100 PASS THETA=0.0004;AA=G;AN=2184;RSQ=0.7052;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.7,-5 22 50666409 rs182347943 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.17,-5 0|0:0:-0,-3.05,-5 22 50666463 . G A 100 PASS LDAF=0.0013;THETA=0.0061;AA=G;AN=2184;RSQ=0.8824;AVGPOST=0.9996;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-3.4,-5 22 50666507 rs55899818 C T 100 PASS RSQ=0.9745;LDAF=0.2172;ERATE=0.0101;AC=467;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;THETA=0.0003;AVGPOST=0.9874;AF=0.21;ASN_AF=0.29;AMR_AF=0.31;AFR_AF=0.03;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.25,-5 0|1:1:-5,0,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.88,-5 22 50666546 rs187703493 G A 100 PASS AA=G;AN=2184;THETA=0.0041;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.5229;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-2.79,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.13,-0.59,-3.62 0|0:0:-0,-2.4,-5 22 50666615 rs71318410 C T 100 PASS AA=C;AN=2184;VT=SNP;LDAF=0.0342;RSQ=0.9247;SNPSOURCE=LOWCOV;AC=71;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9941;AF=0.03;AMR_AF=0.05;AFR_AF=0.002;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.02,-1.28,-5 0|0:0.1:-0.13,-0.6,-2.19 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.7,-5 22 50666669 rs192550738 C T 100 PASS THETA=0.005;ERATE=0.0004;AVGPOST=0.9986;LDAF=0.0013;AA=C;AN=2184;RSQ=0.5936;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.09,-0.73,-3 0|0:0:-0.07,-0.8,-4.1 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.01,-1.92,-5 22 50666733 rs185079222 C T 100 PASS AA=C;LDAF=0.0301;AN=2184;RSQ=0.7147;AVGPOST=0.9791;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=60;THETA=0.0034;AF=0.03;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50666781 rs35082019 C T 100 PASS RSQ=0.8777;LDAF=0.0305;AN=2184;THETA=0.0008;VT=SNP;AA=-;AVGPOST=0.9918;SNPSOURCE=LOWCOV;AC=63;ERATE=0.0006;AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.06,-0.86,-5 0|0:0:-0.16,-0.54,-1.89 0|0:0.05:-0.22,-0.46,-1.25 1|0:0.95:-0.18,-0.47,-2.44 0|0:0:-0.18,-0.47,-3.08 22 50666804 rs12168266 G A 100 PASS ERATE=0.0005;LDAF=0.0035;AA=G;AN=2184;VT=SNP;AVGPOST=0.9976;AC=5;SNPSOURCE=LOWCOV;THETA=0.0098;RSQ=0.7059;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.12,-0.62,-3.12 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0.02,-1.42,-5 22 50666859 rs189980760 A G 100 PASS AN=2184;AC=8;VT=SNP;RSQ=0.5699;AA=A;LDAF=0.0056;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0007;AVGPOST=0.9932;AF=0.0037;ASN_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.09,-0.75,-5 0|0:0:-0.05,-0.99,-5 22 50666883 rs146677178 C G 100 PASS LDAF=0.0027;AA=C;AN=2184;VT=SNP;AVGPOST=0.9993;AC=5;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;RSQ=0.8891;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.58,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.05,-0.98,-5 22 50666885 rs193184401 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.6678;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.01,-1.94,-5 0|0:0:-0.06,-0.88,-5 22 50667054 rs140071911 G A 100 PASS AA=G;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9998;THETA=0.0037;RSQ=0.9135;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0,-2.91,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-2.45,-5 22 50667112 rs150329591 C T 100 PASS LDAF=0.0041;AA=C;AN=2184;VT=SNP;AC=9;AVGPOST=0.9998;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;RSQ=0.9735;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.12,-0.62,-3.14 0|0:0:-0.02,-1.41,-5 0|0:0:-0.11,-0.64,-5 22 50667207 rs116092239 G A 100 PASS LDAF=0.0068;AA=G;AN=2184;THETA=0.006;VT=SNP;AC=14;SNPSOURCE=LOWCOV;RSQ=0.8942;ERATE=0.0003;AVGPOST=0.9984;AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.38,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.05,-1,-4.22 0|0:0:-0.04,-1.09,-5 0|0:0:-0.06,-0.88,-5 22 50667247 rs137964963 G A 100 PASS RSQ=0.6169;LDAF=0.0016;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9984;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.21,-5 0|0:0:-0.17,-0.49,-2.78 0|0:0:-0.01,-1.6,-5 22 50667352 rs184694229 A C 100 PASS AN=2184;LDAF=0.001;VT=SNP;AA=A;AVGPOST=0.9998;THETA=0.0012;RSQ=0.9135;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.07,-0.84,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.76,-5 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0,-2.08,-5 22 50667389 rs78427480 C A 100 PASS AC=12;AA=C;AN=2184;VT=SNP;RSQ=0.9593;LDAF=0.0056;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.44,-5 0|0:0:-0.01,-1.59,-5 0|0:0:-0,-2.26,-5 22 50667480 rs189918269 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.4559;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.56,-5 0|0:0:-0.01,-1.92,-5 0|0:0:-0.03,-1.24,-5 0|0:0.1:-0.21,-0.42,-1.9 0|0:0.05:-0.01,-1.9,-5 22 50667565 rs73187272 G A 100 PASS AC=167;AVGPOST=0.9963;AA=G;AN=2184;LDAF=0.0774;RSQ=0.9814;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0042;ERATE=0.0003;AF=0.08;ASN_AF=0.02;AMR_AF=0.06;AFR_AF=0.06;EUR_AF=0.14 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0.01,-1.73 0|0:0:-0.05,-1,-4.7 0|0:0:-0.02,-1.33,-5 0|0:0:-0.01,-1.52,-5 22 50667619 rs149088280 C G 100 PASS AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.8313;THETA=0.0006;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.85,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.43,-5 22 50667697 rs180730655 C T 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.71,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-4.22,-5 22 50667698 rs143108699 G A 100 PASS ERATE=0.0004;RSQ=0.8105;AA=G;AN=2184;THETA=0.009;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.36,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-2.62,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0,-4.4,-5 22 50667795 rs115962963 C T 100 PASS RSQ=0.9882;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0019;THETA=0.0006;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50667807 . T C 100 PASS AVGPOST=1;LDAF=0.0004;AA=T;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0034;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.62,-5 0|0:0:0,-5,-5 22 50667836 . G C 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50667842 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50667859 rs6010211 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0467;VT=SNP;AA=A;AVGPOST=0.9998;AC=102;ERATE=0.0003;RSQ=0.9985;THETA=0.0003;AF=0.05;AMR_AF=0.01;AFR_AF=0.2 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50667868 . G C 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50667872 . G A 100 PASS LDAF=0.0013;ERATE=0.0014;AA=G;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.927;AC=3;AF=0.0014;ASN_AF=0.0017;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50667905 rs185080513 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50667930 . G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;RSQ=0.7622;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.72,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50667981 . C T 100 PASS AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0025;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.04,-5 0|0:0:-0,-3.62,-5 22 50667982 rs74767375 G A 100 PASS ERATE=0.0004;LDAF=0.0009;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0013;AC=2;RSQ=0.8424;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.07,-5 0|0:0:-0,-3.7,-5 22 50668005 rs34273213 G A 100 PASS RSQ=0.9723;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;LDAF=0.0043;VT=SNP;AC=9;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.93,-5 0|0:0:-0,-2.49,-5 0|0:0:-0,-3.7,-5 22 50668322 rs189161921 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;RSQ=0.7844;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.74,-5 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rs190695755 G A 100 PASS THETA=0.0009;ERATE=0.0005;LDAF=0.0013;AA=g;AN=2184;VT=SNP;RSQ=0.5713;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.28,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.07,-0.81,-5 22 50671462 rs181565065 C T 100 PASS ERATE=0.0005;THETA=0.0032;AN=2184;RSQ=0.5128;VT=SNP;AA=c;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.62,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.01,-1.85,-5 22 50671472 rs17836661 A T 100 PASS LDAF=0.047;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0006;RSQ=0.9912;SNPSOURCE=LOWCOV;AC=102;AA=a;ERATE=0.0003;AF=0.05;ASN_AF=0.14;AMR_AF=0.03;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.58,-5 0|0:0:-0,-2.06,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.01,-1.84,-5 22 50671835 . C T 100 PASS LDAF=0.0004;AA=C;AN=2184;THETA=0.0005;RSQ=0.8999;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.35,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50671849 . C T 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.854;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.97,-5 0|0:0:-0,-1.96,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50671889 . 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50673054 rs78279484 T G 100 PASS AN=2184;RSQ=0.9876;VT=SNP;AC=110;AVGPOST=0.998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0512;AA=t;THETA=0.0003;AF=0.05;ASN_AF=0.13;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.54,-5 0|0:0:-0.01,-1.65,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.07,-0.86,-5 22 50673240 rs185815554 T C 100 PASS AVGPOST=0.9977;AN=2184;AC=20;THETA=0.0005;RSQ=0.8937;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0089;AA=N;ERATE=0.0007;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.2,-0.45,-2.21 0|0:0:-0.08,-0.8,-5 22 50673245 . AC A 96 PASS AVGPOST=0.9939;AN=2184;RSQ=0.7789;VT=INDEL;AC=20;THETA=0.0005;ERATE=0.0007;LDAF=0.0104;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-0.6,-8.1 0|0:0.05:0,-0.6,-8.2 0|0:0:0,0,0 0|0:0:0,-0.3,-2.8 0|0:0:0,-0.9,-12.1 22 50673250 rs111569990 C T 100 PASS THETA=0.0002;AN=2184;VT=SNP;AC=373;LDAF=0.1712;RSQ=0.9913;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0003;AA=N;AF=0.17;ASN_AF=0.25;AMR_AF=0.25;AFR_AF=0.04;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.05,-0.98,-5 0|0:0:-0.02,-1.4,-5 1|0:1:-2.37,-0.44,-0.2 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.02,-1.28,-5 22 50673382 rs115404171 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.0026;RSQ=0.7504;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.12,-0.62,-3.21 0|0:0:-0.05,-1,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.57,-5 22 50673439 rs67881086 G A 100 PASS ERATE=0.0004;AVGPOST=0.9983;RSQ=0.9969;AA=G;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.6851;SNPSOURCE=LOWCOV;AC=1498;AF=0.69;ASN_AF=0.65;AMR_AF=0.62;AFR_AF=0.73;EUR_AF=0.72 GT:DS:GL 1|1:2:-5,-2.72,-0 1|0:1:-2.53,-0.22,-0.41 1|1:2:-5,-0.37,-0.24 1|0:1:-0.1,-0.68,-4.1 1|0:1:-1.33,-0.02,-5 22 50673451 rs73893145 C G 100 PASS AVGPOST=0.9983;AN=2184;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=21;ERATE=0.0003;RSQ=0.9364;LDAF=0.0104;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.08,-5 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.11,-0.63,-4 0|0:0:-0.03,-1.19,-5 0|0:0:-0.07,-0.85,-5 22 50673453 . CCT C 385 PASS ERATE=0.0004;THETA=0.0002;AN=2184;AC=57;VT=INDEL;RSQ=0.9417;AVGPOST=0.9959;LDAF=0.0272;AF=0.03;ASN_AF=0.03;AMR_AF=0.1;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-2.1,-39.7 0|0:0:0,0,0 0|0:0.05:0,-0.6,-12.2 0|0:0:0,-1.2,-24.4 0|0:0:0,-0.3,-6.1 22 50673540 rs59435273 T C 100 PASS THETA=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.9359;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-2.68,-5 22 50673826 rs78646727 A G 100 PASS THETA=0.0002;AA=G;AN=2184;LDAF=0.0503;AVGPOST=0.9997;VT=SNP;AC=110;SNPSOURCE=LOWCOV;RSQ=0.9971;ERATE=0.0003;AF=0.05;ASN_AF=0.13;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.04,-1.06,-4.7 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0,-2.02,-5 0|0:0:-0,-1.95,-5 22 50673849 rs111664556 C G 100 PASS AVGPOST=1;AA=C;AN=2184;AC=6;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;RSQ=0.9921;AF=0.0027;AFR_AF=0.01 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ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;AC=13;RSQ=0.8251;VT=SNP;LDAF=0.0059;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0.05:-0.03,-1.17,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.57,-5 22 50673981 rs76530694 G A 100 PASS AA=g;AN=2184;AVGPOST=0.9981;THETA=0.0005;RSQ=0.8392;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0051;AF=0.0041;ASN_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.65,-5 0|0:0:-0.01,-1.61,-5 22 50673984 rs117438449 G A 100 PASS ERATE=0.0005;LDAF=0.0013;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4272;AVGPOST=0.9982;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.81,-5 22 50674057 rs188675436 C T 100 PASS AVGPOST=0.9986;AA=C;LDAF=0.0016;AN=2184;ERATE=0.0009;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=2;RSQ=0.6747;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.12,-5 22 50674099 rs192318867 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;RSQ=0.4902;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.46,-2.77 0|0:0:-0.08,-0.77,-4.7 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0.02,-1.46,-5 0|0:0:-0.11,-0.66,-4.7 22 50674152 rs138738822 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4296;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.29,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.02,-1.27,-5 0|0:0:-0.18,-0.46,-2.98 22 50674166 rs183249093 C T 100 PASS ERATE=0.0004;LDAF=0.0021;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8205;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9992;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.13,-0.59,-3.66 0|0:0:-0.01,-1.75,-5 0|0:0:-0.48,-0.48,-0.48 22 50674232 rs5771256 G A 100 PASS THETA=0.0002;AA=G;AN=2184;LDAF=0.6892;VT=SNP;ERATE=0.001;AVGPOST=0.9922;AC=1509;RSQ=0.9867;SNPSOURCE=LOWCOV;AF=0.69;ASN_AF=0.66;AMR_AF=0.61;AFR_AF=0.75;EUR_AF=0.72 GT:DS:GL 1|1:2:-5,-0.89,-0.06 1|0:1.05:-1.94,-0.42,-0.22 1|1:2:-2.31,-0.13,-0.61 1|0:1:-5,-0,-2.64 1|0:1:-0.22,-0.43,-1.78 22 50674238 rs79916336 G A 100 PASS RSQ=0.9728;AA=g;AC=94;AN=2184;AVGPOST=0.9972;THETA=0.0005;VT=SNP;LDAF=0.0444;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.04;ASN_AF=0.13;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0.05:-0.27,-0.43,-1 0|0:0:-0.14,-0.57,-3.47 0|0:0:-0.02,-1.33,-5 0|0:0:-0.14,-0.57,-3.38 22 50674251 rs187325544 C T 100 PASS ERATE=0.0005;RSQ=0.8221;AA=C;AN=2184;VT=SNP;AVGPOST=0.998;AC=9;SNPSOURCE=LOWCOV;LDAF=0.0051;THETA=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0.05:-0.2,-0.44,-2.05 0|0:0:-0.15,-0.55,-3.19 0|0:0:-0.03,-1.21,-5 0|0:0:-0.12,-0.63,-3.92 22 50674531 rs76117282 G A 100 PASS 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G GT 315 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=INDEL;RSQ=0.989;AVGPOST=0.9989;LDAF=0.0402;AC=87;AF=0.04;AMR_AF=0.02;AFR_AF=0.16 GT:DS:GL 0|0:0:0,-0.9,-11.7 0|0:0:0,-1.2,-15.6 0|0:0:0,-0.9,-11.7 0|0:0:0,-0.3,-3.9 0|0:0:0,-0.3,-3.9 22 50674543 rs192278680 G A 100 PASS AVGPOST=0.9985;RSQ=0.9597;AA=G;AN=2184;VT=SNP;AC=34;LDAF=0.0157;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.02;ASN_AF=0.06 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.8,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.07,-0.83,-5 22 50674587 rs138278808 C T 100 PASS AA=T;AN=2184;RSQ=0.9612;THETA=0.0008;VT=SNP;AVGPOST=0.9953;AC=110;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.051;AF=0.05;ASN_AF=0.13;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.45,-0.47,-0.52 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.41 0|0:0:-0.48,-0.48,-0.48 22 50674589 rs142960073 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9641;THETA=0.0005;VT=SNP;AC=15;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0069;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.45,-0.47,-0.52 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50674607 rs183896634 C T 100 PASS LDAF=0.0033;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.5862;AVGPOST=0.9969;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0023;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.45,-0.47,-0.52 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50674642 rs75286427 G T 100 PASS ERATE=0.0004;RSQ=0.9885;LDAF=0.0403;AA=G;AN=2184;VT=SNP;AVGPOST=0.9989;AC=87;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.04;AMR_AF=0.02;AFR_AF=0.16 GT:DS:GL 0|0:0:-0.08,-0.77,-5 0|0:0:-0.14,-0.56,-2.56 0|0:0:-0.04,-1.06,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 22 50674678 rs148768667 C A 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AC=23;AA=c;LDAF=0.0107;RSQ=0.7547;AVGPOST=0.9928;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;ASN_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.16,-0.5,-2.78 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.16,-5 0|0:0:-0.48,-0.48,-0.48 22 50674692 rs187144559 G A 100 PASS ERATE=0.0004;AVGPOST=0.9957;AA=G;AN=2184;VT=SNP;RSQ=0.4749;LDAF=0.003;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.13,-0.58,-3.55 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.02,-1.43,-5 0|0:0:-0.48,-0.48,-0.48 22 50674693 rs112891455 T C 100 PASS AA=T;AN=2184;LDAF=0.0093;VT=SNP;ERATE=0.0008;RSQ=0.7843;SNPSOURCE=LOWCOV;AC=19;AVGPOST=0.995;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.13,-0.59,-3.66 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.02,-1.4,-5 0|0:0:-0.48,-0.48,-0.48 22 50674807 rs56075714 G T 100 PASS LDAF=0.0172;RSQ=0.8778;AA=g;AN=2184;ERATE=0.0009;VT=SNP;SNPSOURCE=LOWCOV;AC=36;AVGPOST=0.9949;THETA=0.0003;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.05;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.32,-5 0|0:0:-0.48,-0.48,-0.48 22 50674948 rs191142799 C A 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.02,-1.36,-5 22 50675017 rs77925564 T C 100 PASS AVGPOST=0.9927;THETA=0.0004;AA=T;AN=2184;VT=SNP;AC=56;RSQ=0.913;SNPSOURCE=LOWCOV;LDAF=0.027;ERATE=0.0003;AF=0.03;ASN_AF=0.1;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.1,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.04,-1.08,-5 22 50675059 rs115603705 C A 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;RSQ=0.8315;THETA=0.0003;AVGPOST=0.9992;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.4,-0.23,-1.88 0|0:0:-0.01,-1.61,-5 22 50675447 rs77044695 C T 100 PASS AA=C;LDAF=0.0511;AN=2184;AC=111;THETA=0.0005;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.99;AF=0.05;ASN_AF=0.13;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-2.62,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.18,-0.47,-3.07 22 50675473 rs184568776 A C 100 PASS LDAF=0.0036;AVGPOST=0.9994;AN=2184;AC=8;VT=SNP;RSQ=0.9254;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0,-2.38,-5 22 50675593 rs190224042 G A 100 PASS 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PASS AC=17;ERATE=0.0004;AA=C;RSQ=0.9127;AN=2184;AVGPOST=0.9979;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0082;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-2.71,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.19,-0.45,-2.88 22 50675962 rs5771259 G A 100 PASS AVGPOST=0.9946;AA=G;AN=2184;RSQ=0.9857;THETA=0.0005;LDAF=0.1848;VT=SNP;AC=400;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.18;ASN_AF=0.25;AMR_AF=0.25;AFR_AF=0.1;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.21,-0.46,-1.36 1|0:1:-4.7,-0.01,-1.93 0|0:0:-0.01,-1.49,-5 0|0:0:-0.04,-1.04,-5 22 50676032 rs188980445 C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;AC=6;VT=SNP;LDAF=0.0028;RSQ=0.9047;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0.1:-1.78,-0.01,-3.12 0|0:0:-0.06,-0.9,-5 0|0:0:-0.04,-1.11,-5 22 50676089 rs181703046 C T 100 PASS 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GT G 179 PASS THETA=0.0002;AVGPOST=0.7676;AN=2184;VT=INDEL;LDAF=0.6609;AC=1551;ERATE=0.0493;RSQ=0.5902;AF=0.71;ASN_AF=0.73;AMR_AF=0.61;AFR_AF=0.86;EUR_AF=0.64 GT:DS:GL 1|0:0.75:0,-0.3,-3 1|0:1.05:0,0,0 1|1:1.65:0,0,0 0|0:0.35:0,-0.3,-3 1|0:0.75:0,0,0 22 50677022 rs76617415 A G 100 PASS THETA=0.0002;AN=2184;VT=SNP;AC=113;AA=A;RSQ=0.9802;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0006;LDAF=0.0523;AF=0.05;ASN_AF=0.14;AMR_AF=0.03;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.26,-0.44,-1.03 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50677123 rs186135261 C G 100 PASS RSQ=0.8168;AA=C;AN=2184;VT=SNP;AVGPOST=0.998;AC=9;LDAF=0.0049;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.0041;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.16,-0.52,-2.71 0|0:0:-0.48,-0.48,-0.48 22 50677202 rs138212214 G A 100 PASS 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T C 100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682234 . C A 100 PASS THETA=0.0009;RSQ=0.9882;AVGPOST=1;AA=C;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=EXOME;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682300 . A G 100 PASS AVGPOST=1;AN=2184;RSQ=0;VT=SNP;LDAF=0;AA=A;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682313 rs149449911 G T 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682351 rs143957857 G T 100 PASS RSQ=0.8614;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682361 rs180777137 C G 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682446 . T C 100 PASS AVGPOST=1;THETA=0.0002;AA=T;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682536 . G A 100 PASS RSQ=0.8665;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682550 . G C 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682578 rs8137873 A G 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=40;VT=SNP;AA=A;LDAF=0.0183;ERATE=0.0003;RSQ=0.999;AF=0.02;AFR_AF=0.08 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.31,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682644 . A C 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.88,-5 0|0:0:-0,-2.32,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682758 . G A 100 PASS AVGPOST=1;LDAF=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682771 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;THETA=0.0012;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682785 . C T 100 PASS AA=C;RSQ=0.9181;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682800 rs148626062 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9844;VT=SNP;LDAF=0.0014;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682865 rs5771270 G A 100 PASS RSQ=0.9992;AC=637;LDAF=0.2911;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.001;ERATE=0.0003;AF=0.29;ASN_AF=0.34;AMR_AF=0.23;AFR_AF=0.13;EUR_AF=0.39 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:-0,-4.7,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50682879 rs61736756 T C 100 PASS THETA=0.0014;LDAF=0.0398;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;AC=87;ERATE=0.0003;RSQ=0.9989;AVGPOST=0.9999;AF=0.04;AMR_AF=0.02;AFR_AF=0.16 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.64,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50682913 rs113946237 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=6;VT=SNP;RSQ=0.9852;LDAF=0.0028;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.4,-5 0|0:0:-0,-2.53,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50683032 rs33967671 A AT 501 PASS LDAF=0.3554;THETA=0.0004;AN=2184;VT=INDEL;RSQ=0.9754;AC=785;AVGPOST=0.986;ERATE=0.0007;AF=0.36;ASN_AF=0.34;AMR_AF=0.24;AFR_AF=0.46;EUR_AF=0.36 GT:DS:GL 1|0:1:-2.9,0,-5.2 0|0:0:0,0,0 0|1:1:-2.8,-0.3,0 1|0:0.7:0,0,0 1|0:1:0,0,0 22 50683191 rs185093932 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.4234;AVGPOST=0.999;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.03,-1.14,-5 22 50683304 rs189169901 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.472;AC=2;AVGPOST=0.9974;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.06 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.18,-0.47,-3.08 22 50683395 rs45480691 G A 100 PASS AA=g;THETA=0.0004;RSQ=0.9706;AN=2184;VT=SNP;AC=108;LDAF=0.0508;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9965;AF=0.05;ASN_AF=0.13;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.61,-4 0|0:0:-0.48,-0.48,-0.48 22 50683418 rs181863609 T C 100 PASS THETA=0.0004;AVGPOST=0.9864;AN=2184;VT=SNP;AA=c;AC=123;ERATE=0.0011;LDAF=0.0601;SNPSOURCE=LOWCOV;RSQ=0.907;AF=0.06;ASN_AF=0.14;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.18,-0.47,-2.3 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.38,-0.24,-2.48 0|0:0:-0.48,-0.48,-0.48 22 50683553 rs186381457 C T 100 PASS AC=7;THETA=0.0004;AN=2184;RSQ=0.6803;VT=SNP;AA=c;AVGPOST=0.9969;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0032;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.19,-0.46,-2.74 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.17,-3.38 0|0:0:-0.19,-0.46,-2.16 22 50683564 rs146255228 G C 100 PASS THETA=0.0009;AA=g;RSQ=0.3535;AN=2184;LDAF=0.0043;VT=SNP;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0012;AVGPOST=0.9937;AF=0.0018;ASN_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.47,-2.8 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.82,-5 0|0:0:-0.19,-0.46,-2.17 22 50683658 rs78244765 G C 100 PASS ERATE=0.0004;AVGPOST=0.9977;AC=94;AA=G;AN=2184;VT=SNP;LDAF=0.044;RSQ=0.9802;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.04;ASN_AF=0.13;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.33,-5 22 50683698 rs191771005 G T 100 PASS AVGPOST=0.9939;LDAF=0.0066;AA=G;AN=2184;AC=8;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.6046;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.26,-0.39,-1.31 0|0:0:-0.34,-0.39,-0.87 22 50683792 rs7292864 A G 100 PASS AC=1716;AA=G;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.9656;THETA=0.0053;SNPSOURCE=LOWCOV;AVGPOST=0.9844;LDAF=0.7802;AF=0.79;ASN_AF=0.79;AMR_AF=0.66;AFR_AF=0.96;EUR_AF=0.73 GT:DS:GL 1|1:2:-0.48,-0.48,-0.48 1|0:0.95:-0.48,-0.48,-0.48 1|1:2:-0.48,-0.48,-0.48 1|0:1:-2.01,-0,-3.21 1|0:1:-2.15,-0.01,-2.27 22 50683935 . T A 100 PASS ERATE=0.0005;AVGPOST=0.9985;AA=T;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5281;SNPSOURCE=EXOME;AC=1;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.74,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.8,-5 0|0:0:-0,-2.86,-5 0|0:0:-0,-3.92,-5 22 50683973 . C G 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0003;AC=3;AVGPOST=0.9999;RSQ=0.9693;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.03,-5 0|0:0:0,-5,-5 22 50683997 . C A 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.72,-5 0|0:0:0,-5,-5 22 50684097 rs144165433 G A 100 PASS LDAF=0.0036;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=8;RSQ=0.9826;VT=SNP;THETA=0.0006;ERATE=0.0003;AVGPOST=0.9999;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.09,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684256 rs75596977 T C 100 PASS AC=112;AA=C;LDAF=0.0511;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;ERATE=0.0003;RSQ=0.9975;THETA=0.0003;AF=0.05;ASN_AF=0.14;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.98,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.48,-5 0|0:0:0,-5,-5 22 50684279 . A G 100 PASS LDAF=0.0009;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;THETA=0.0003;RSQ=0.7213;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.9,-5 0|0:0:-0,-3.28,-5 22 50684289 rs146510222 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.9359;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.11,-5 0|0:0:-0,-4,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-3.4,-5 22 50684296 rs13058062 T C 100 PASS AA=C;AVGPOST=0.9943;SNPSOURCE=LOWCOV,EXOME;AN=2184;ERATE=0.0024;VT=SNP;LDAF=0.8182;RSQ=0.9867;AC=1793;THETA=0.001;AF=0.82;ASN_AF=0.85;AMR_AF=0.77;AFR_AF=0.97;EUR_AF=0.73 GT:DS:GL 1|1:2:-5,-3.85,-0 1|0:1:-5,-0,-4.4 1|1:2:-5,-1.19,-0.03 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50684312 rs5771271 G A 100 PASS AC=316;ERATE=0.0064;RSQ=0.9565;LDAF=0.149;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.984;AF=0.14;ASN_AF=0.34;AMR_AF=0.06;AFR_AF=0.02;EUR_AF=0.13 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0.05:-0.82,-0.07,-5 0|1:0.95:-1.46,-0.02,-3.34 1|0:1:-5,-0,-2.76 0|0:0:-0,-4.22,-5 22 50684374 . G T 100 PASS LDAF=0.0009;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;RSQ=0.711;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.05,-1,-4.22 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50684415 rs11553697 T C 100 PASS ERATE=0.0004;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;LDAF=0.0464;AC=101;RSQ=0.9919;AVGPOST=0.9992;AF=0.05;ASN_AF=0.14;AMR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.36,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0,-2.82,-5 0|0:0:-0,-3.34,-5 22 50684471 . G C 100 PASS AVGPOST=1;AA=G;AN=2184;AC=6;VT=SNP;THETA=0.0006;LDAF=0.0028;SNPSOURCE=EXOME;ERATE=0.0003;RSQ=0.9921;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684515 . C T 100 PASS RSQ=0.9336;AA=C;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;ERATE=0.001;SNPSOURCE=EXOME;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684561 rs140033763 C G 100 PASS AVGPOST=1;LDAF=0.0041;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0006;AC=9;RSQ=1;ERATE=0.0003;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684655 rs149760482 G A 100 PASS AVGPOST=1;THETA=0.0044;AA=G;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=0.9941;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684675 rs186392057 C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0019;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684702 rs191185971 C T 100 PASS AC=7;THETA=0.0009;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0032;VT=SNP;ERATE=0.0003;RSQ=0.9932;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684708 rs2294404 G A 100 PASS AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9952;LDAF=0.176;RSQ=0.9876;VT=SNP;AC=384;ERATE=0.0003;THETA=0.0003;AF=0.18;ASN_AF=0.24;AMR_AF=0.23;AFR_AF=0.09;EUR_AF=0.15 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-2.09,-0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684710 rs145761730 G A 100 PASS LDAF=0.0033;THETA=0.0004;AA=G;AN=2184;ERATE=0.0032;VT=SNP;SNPSOURCE=LOWCOV;AC=3;RSQ=0.6261;AVGPOST=0.9965;AF=0.0014;ASN_AF=0.0017;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0.65:-2.16,-0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684747 rs76578729 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=95;AVGPOST=0.9998;LDAF=0.0434;THETA=0.0007;ERATE=0.0003;RSQ=0.9975;AF=0.04;ASN_AF=0.14;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684748 . A G 100 PASS AN=2184;RSQ=0.8498;VT=SNP;AA=A;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.0013;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684822 . G C 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684852 rs77096954 G C 100 PASS RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.006;VT=SNP;AC=95;AVGPOST=0.9998;LDAF=0.0434;ERATE=0.0003;AF=0.04;ASN_AF=0.14;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684863 rs182113508 G A 100 PASS LDAF=0.0024;THETA=0.0047;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;AC=5;SNPSOURCE=LOWCOV;RSQ=0.9652;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684869 rs148966896 G A 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0014;AA=G;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684902 rs116551091 C T 100 PASS AA=C;AN=2184;AC=13;AVGPOST=0.9997;VT=SNP;LDAF=0.0061;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;RSQ=0.9805;AF=0.01;ASN_AF=0.0017;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.01,-1.9,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50684968 rs76980022 C G 100 PASS ERATE=0.0004;RSQ=0.9306;AA=C;AN=2184;THETA=0.0041;VT=SNP;AC=9;SNPSOURCE=LOWCOV;LDAF=0.0045;AVGPOST=0.9992;AF=0.0041;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.08,-5 0|0:0:-0,-2.36,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50685051 rs111248040 C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;RSQ=0.9566;AVGPOST=0.9995;LDAF=0.0051;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.2,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50685063 . C T 100 PASS RSQ=0.9049;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.39,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50685069 rs143703422 C T 100 PASS AVGPOST=1;LDAF=0.0027;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;THETA=0.0005;VT=SNP;RSQ=1;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50685086 . A G 100 PASS RSQ=0.9049;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;THETA=0.0019;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50685154 . C A 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0052;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50685290 rs2142849 C T 100 PASS AVGPOST=1;THETA=0.0015;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;VT=SNP;LDAF=0.0028;ERATE=0.0003;RSQ=0.9921;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50685310 . G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50685332 rs61748567 G A 100 PASS THETA=0.0047;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0054;RSQ=0.9516;VT=SNP;AC=11;ERATE=0.0003;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.27,-5 0|0:0:0,-5,-5 22 50685370 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50685402 . G T 100 PASS AA=G;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 22 50685477 rs111657073 G A 100 PASS ERATE=0.0005;RSQ=0.9469;LDAF=0.0068;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0028;AC=14;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.02,-1.36,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 22 50685478 rs146910186 G A 100 PASS AC=7;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.8854;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.01,-1.59,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.4,-5 22 50685508 rs4838866 A G 100 PASS LDAF=0.8702;AA=G;AN=2184;AC=1903;VT=SNP;AVGPOST=0.9976;ERATE=0.0018;RSQ=0.9913;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.87;ASN_AF=0.88;AMR_AF=0.83;AFR_AF=0.93;EUR_AF=0.85 GT:DS:GL 1|1:2:-5,-4.4,-0 1|1:2:-5,-3.02,-0 1|1:2:-5,-3.08,-0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50685700 rs183306663 T A 100 PASS RSQ=0.7772;AVGPOST=0.9994;AA=T;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.1,-0.67,-5 22 50685748 rs188919653 G T 100 PASS ERATE=0.0004;RSQ=0.6168;LDAF=0.0009;THETA=0.0022;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.46,-5 22 50685896 rs77250110 C G 100 PASS RSQ=0.9336;AA=C;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0027;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.59,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-4.4,-5 22 50685921 rs150100348 A G 100 PASS ERATE=0.0005;LDAF=0.0024;RSQ=0.9565;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;THETA=0.0017;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.48,-5 0|0:0:0,-5,-5 22 50685945 rs58193546 C T 100 PASS THETA=0.0009;ERATE=0.0005;AA=C;AN=2184;RSQ=0.9823;LDAF=0.0093;AC=20;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.24,-5 0|0:0:-0,-2.74,-5 0|0:0:-0,-3.49,-5 0|0:0:0,-5,-5 22 50685957 rs114491287 A G 100 PASS AC=12;THETA=0.0009;AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;RSQ=0.9734;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0055;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.8,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 22 50685980 rs115053950 A G 100 PASS ERATE=0.0004;RSQ=0.9958;AN=2184;LDAF=0.0106;VT=SNP;AC=23;THETA=0.0018;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9999;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.86,-5 0|0:0:-0,-3.14,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50686031 rs193044347 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.52,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686034 rs116146084 T C 100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.8803;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686210 . G T 100 PASS RSQ=0.9049;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686283 . C T 100 PASS AVGPOST=1;THETA=0.0137;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-2.11,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686284 rs78536991 G A 100 PASS THETA=0.0009;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0019;RSQ=0.9546;AVGPOST=0.9998;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.38,-5 0|0:0:-0,-2.72,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686333 . T G 100 PASS AVGPOST=1;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.68,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686371 rs34402301 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9794;LDAF=0.0294;AC=64;ERATE=0.0003;AVGPOST=0.9984;AF=0.03;AMR_AF=0.05;AFR_AF=0.0041;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.01,-1.9,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686399 . C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;RSQ=0.8457;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686400 . G A 100 PASS THETA=0.0004;RSQ=0.9181;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686403 rs112311672 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0018;VT=SNP;RSQ=1;AC=4;THETA=0.0007;ERATE=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686424 . C A 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.68,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686473 rs138377809 G A 100 PASS ERATE=0.0004;LDAF=0.0021;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0027;RSQ=0.8328;AC=4;AVGPOST=0.9992;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.64,-5 0|0:0:-0.05,-1,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686501 rs36039258 A T 100 PASS RSQ=0.9678;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0117;VT=SNP;THETA=0.0028;AA=A;AVGPOST=0.9991;ERATE=0.0003;AC=25;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.05,-1,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686558 rs188078440 C A 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.9359;THETA=0.0019;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.03,-1.23,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686588 rs149280657 G A 100 PASS RSQ=0.9882;AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0033;LDAF=0.0019;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686590 rs146206923 A G 100 PASS ERATE=0.0004;RSQ=0.8292;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;AVGPOST=0.9996;LDAF=0.001;VT=SNP;AA=A;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686607 rs139329825 A G 100 PASS AC=17;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9619;AVGPOST=0.999;VT=SNP;ERATE=0.0003;THETA=0.0003;LDAF=0.0082;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.75,-5 0|0:0:-0,-3.27,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686617 rs191719342 G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.75,-5 0|0:0:-0,-3.28,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686642 . G A 100 PASS LDAF=0.0021;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9379;SNPSOURCE=EXOME;AC=5;ERATE=0.0003;THETA=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.73,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686679 rs79969721 C T 100 PASS AA=C;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.8015;LDAF=0.0007;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686737 . A G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8194;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686767 rs114219302 G C 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0142;VT=SNP;AC=31;THETA=0.0007;ERATE=0.0003;RSQ=0.9984;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686772 . G C 100 PASS RSQ=0.9181;AA=G;AN=2184;VT=SNP;THETA=0.0018;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.03,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686775 . C T 100 PASS AA=C;AN=2184;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;RSQ=0.0999;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0036;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.87,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686807 rs184151274 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0006;AA=A;AC=1;ERATE=0.0003;LDAF=0.0005;RSQ=0.7497;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.34,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 22 50686830 rs35820251 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0006;RSQ=0.9943;LDAF=0.039;AC=86;ERATE=0.0003;AF=0.04;ASN_AF=0.08;AMR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50686938 . A G 100 PASS AN=2184;AVGPOST=0.9997;THETA=0.0008;VT=SNP;AA=A;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.7617;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.15,-5 0|0:0:-0,-2.74,-5 22 50687099 . C T 100 PASS RSQ=0.9049;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0,-3,-5 0|0:0:-0.05,-1,-4.22 0|0:0:-0.01,-1.79,-5 0|0:0:-0.02,-1.36,-5 22 50687115 rs148677619 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.08,-0.78,-3.15 0|0:0:-0.01,-1.52,-5 0|0:0:-0.01,-1.71,-5 22 50687117 . C T 100 PASS RSQ=0.3914;LDAF=0.0009;AA=C;AVGPOST=0.9983;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0,-2.68,-5 0|0:0:-0.05,-0.98,-4.1 0|0:0:-0.01,-1.87,-5 0|0:0:-0,-2.02,-5 22 50687118 . G A 100 PASS ERATE=0.0004;RSQ=0.7645;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0018;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.4,-5 0|0:0:-0,-2.3,-5 0|0:0:-0.08,-0.77,-3.09 0|0:0:-0.01,-1.89,-5 0|0:0:-0,-1.99,-5 22 50687178 rs41283469 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;THETA=0.0008;VT=SNP;AC=86;ERATE=0.0003;LDAF=0.0392;RSQ=0.9968;AF=0.04;ASN_AF=0.08;AMR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-3.36,-5 22 50687190 . G C 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7461;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.0036;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.09,-5 0|0:0:-0,-3.52,-5 22 50687294 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.001;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 22 50687302 rs188063629 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0011;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50687328 rs76646287 C A 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;AC=86;THETA=0.0007;ERATE=0.0003;RSQ=0.9974;LDAF=0.0392;AF=0.04;ASN_AF=0.08;AMR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.22,-5 22 50687334 . G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;AVGPOST=0.9995;RSQ=0.6288;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.56,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-3.85,-5 22 50687487 . C A 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.9157;THETA=0.0005;LDAF=0.001;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-3.49,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.11,-0.66,-4.7 22 50687521 . C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0007;RSQ=0.7129;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-3.03,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.07,-0.85,-5 22 50687558 . G A 100 PASS AA=g;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.65,-5 22 50687573 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;RSQ=0;THETA=0.0008;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.02,-1.33,-5 22 50687595 rs75455741 A G 100 PASS ERATE=0.0004;AC=120;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0042;AVGPOST=0.9995;LDAF=0.0548;AF=0.05;ASN_AF=0.09;AMR_AF=0.04;AFR_AF=0.05;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.18,-0.48,-2.48 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.63,-5 0|0:0:-0.06,-0.89,-5 22 50687614 . G A 100 PASS AA=g;RSQ=0.7337;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.002;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.06,-0.89,-5 22 50687618 . A G 100 PASS RSQ=0.581;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=EXOME;AC=1;AA=a;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.11,-0.66,-4.7 22 50687800 rs117636118 C T 100 PASS AC=7;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9694;AVGPOST=0.9996;VT=SNP;LDAF=0.0034;ERATE=0.0003;AF=0.0032;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.57,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50687882 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50687946 rs185543852 C G 100 PASS AVGPOST=1;AA=C;AN=2184;AC=8;LDAF=0.0037;VT=SNP;THETA=0.0006;RSQ=0.9941;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50687970 rs3830750 CAT C 460 PASS ERATE=0.0005;RSQ=0.9772;AC=85;AN=2184;AVGPOST=0.9981;VT=INDEL;LDAF=0.0395;THETA=0.001;AF=0.04;ASN_AF=0.08;AMR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-2.4,-48.6 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-6.1 0|0:0:0,0,0 22 50688049 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688051 rs190466805 C T 100 PASS THETA=0.0009;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688235 rs738334 T C 100 PASS AC=1798;AA=C;AVGPOST=0.9994;AN=2184;LDAF=0.822;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9985;AF=0.82;ASN_AF=0.86;AMR_AF=0.8;AFR_AF=0.97;EUR_AF=0.71 GT:DS:GL 1|1:2:-5,-5,0 1|0:1:-0.21,-0.46,-1.36 1|1:2:-0.44,-0.46,-0.54 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50688236 rs742182 G A 100 PASS AA=G;AN=2184;LDAF=0.0105;VT=SNP;AC=23;AVGPOST=0.9998;RSQ=0.9897;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0034;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.24,-0.45,-1.17 0|0:0:-0,-3.66,-5 0|0:0:0,-5,-5 22 50688259 . C A 100 PASS RSQ=0.9049;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.01,-1.93,-5 0|0:0:0,-5,-5 22 50688335 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8803;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688348 rs1555048 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9987;THETA=0.0005;VT=SNP;LDAF=0.8225;AC=1799;ERATE=0.0003;AVGPOST=0.9995;AF=0.82;ASN_AF=0.86;AMR_AF=0.8;AFR_AF=0.97;EUR_AF=0.71 GT:DS:GL 1|1:2:-5,-5,0 1|0:1:-5,0,-5 1|1:2:-5,-3.7,-0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50688398 rs181606017 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688434 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.12,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688456 rs151258201 C T 100 PASS AA=C;RSQ=0.867;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.94,-5 0|0:0:-0,-2.18,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688532 . C T 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688533 . A T 100 PASS THETA=0.0015;RSQ=0.876;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688550 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688572 . C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.7784;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.36,-5 0|0:0:-0.01,-1.84,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688573 . G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;THETA=0.0019;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.01,-1.89,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688605 . C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;THETA=0.0025;AC=1;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.22,-0.46,-1.25 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50688635 . C T 100 PASS ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0011;RSQ=0.8758;THETA=0.0016;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.21,-0.47,-1.42 0|0:0:-0.21,-0.47,-1.35 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50688696 rs150016700 G C 100 PASS AA=G;AN=2184;LDAF=0.0148;VT=SNP;RSQ=0.9834;AC=32;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;ASN_AF=0.05;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.08,-0.78,-3.14 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 22 50688703 rs73893147 C T 100 PASS RSQ=0.9966;AA=C;AN=2184;VT=SNP;AC=135;LDAF=0.0617;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.06;AMR_AF=0.02;AFR_AF=0.26 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.62,-2.38 0|0:0:-0.13,-0.59,-2.13 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 22 50688781 rs73435285 G A 100 PASS THETA=0.0022;AA=G;AN=2184;RSQ=0.9935;VT=SNP;LDAF=0.0064;AC=14;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0.03,-1.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50688893 rs186782930 G A 100 PASS LDAF=0.0013;RSQ=0.2774;AA=G;AN=2184;VT=SNP;AVGPOST=0.9976;AC=0;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.38,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50689002 rs77003572 G A 100 PASS LDAF=0.0428;AC=94;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;RSQ=0.9971;ERATE=0.0003;AF=0.04;ASN_AF=0.09;AMR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.62,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50689030 rs909688 A G 100 PASS AA=G;AN=2184;THETA=0.0005;LDAF=0.7589;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=1660;RSQ=0.9979;AF=0.76;ASN_AF=0.86;AMR_AF=0.77;AFR_AF=0.72;EUR_AF=0.71 GT:DS:GL 1|1:2:-5,-4.22,-0 1|0:1:-5,0,-5 1|1:2:-5,-0.9,-0.06 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50689076 rs147686171 C T 100 PASS AA=C;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;ERATE=0.0008;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;RSQ=0.8011;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.28,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-3.01,-5 0|0:0:0,-5,-5 22 50689122 rs79802996 G C 100 PASS ERATE=0.0004;RSQ=0.6753;AA=G;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.46,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.04,-1.02,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.01,-1.87,-5 22 50689267 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:-0.01,-1.63,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0,-3.25,-5 0|0:0:-0.01,-1.69,-5 22 50689311 rs146669691 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0008;LDAF=0.001;VT=SNP;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.87,-5 0|0:0:-0.13,-0.6,-2.16 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.55,-5 22 50689427 rs147929426 G A 100 PASS AVGPOST=1;LDAF=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.25,-5 22 50689460 . A G 100 PASS AN=2184;VT=SNP;RSQ=0.9546;AA=A;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0003;AC=3;AVGPOST=0.9999;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.83,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|1:1:-5,0,-5 0|1:1:-5,0,-5 22 50689654 rs76662439 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.998;RSQ=0.9275;LDAF=0.0122;SNPSOURCE=LOWCOV;AC=25;AF=0.01;ASN_AF=0.04;EUR_AF=0.004 GT:DS:GL 0|0:0.05:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.37 0|0:0:-0,-2.07,-5 22 50689900 rs117898360 T C 100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.8701;AVGPOST=0.9859;ERATE=0.0016;SNPSOURCE=LOWCOV;AC=98;LDAF=0.0493;AF=0.04;ASN_AF=0.09;AMR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.15,-0.53,-3.25 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.92 22 50690050 rs79016563 G A 100 PASS RSQ=0.8116;AA=g;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0585;AVGPOST=0.9727;AC=117;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.05;ASN_AF=0.05;AMR_AF=0.1;AFR_AF=0.02;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.04,-1.03,-5 0|0:0.05:-0.48,-0.48,-0.48 1|0:0.7:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.7 22 50690208 rs143811174 G T 100 PASS RSQ=0.6094;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.15,-0.54,-3.3 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.02,-1.47,-5 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0,-2.09,-5 22 50690322 rs2341111 G C 100 PASS AVGPOST=0.9963;AA=C;AN=2184;AC=1790;LDAF=0.8173;VT=SNP;RSQ=0.9915;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0007;AF=0.82;ASN_AF=0.86;AMR_AF=0.79;AFR_AF=0.96;EUR_AF=0.71 GT:DS:GL 1|1:2:-5,-0.89,-0.06 1|0:1:-5,-0,-4.1 1|1:2:-5,-0.95,-0.05 1|0:1:-5,-0,-2.79 1|0:1:-5,-0.04,-1.1 22 50690355 rs148201785 G A 100 PASS LDAF=0.0013;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.3078;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.35,-5 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.05,-0.96,-4 0|0:0:-0,-1.97,-5 0|0:0:-0.12,-0.63,-3.92 22 50690357 rs113256600 G C 100 PASS ERATE=0.0004;RSQ=0.9063;AVGPOST=0.9994;AA=G;AN=2184;AC=6;THETA=0.0005;VT=SNP;LDAF=0.003;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.05,-1,-4.22 0|0:0:-0.01,-1.93,-5 0|0:0:-0.11,-0.64,-4.1 22 50690365 rs75847948 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0452;SNPSOURCE=LOWCOV;AC=98;RSQ=0.9791;THETA=0.0003;AF=0.04;ASN_AF=0.09;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.07,-0.86,-5 0|0:0:-0.05,-0.99,-4.22 0|0:0:-0,-1.95,-5 0|0:0:-0.12,-0.62,-3.8 22 50690373 rs74791157 GC G 160 PASS AC=94;AN=2184;VT=INDEL;THETA=0.0008;RSQ=0.9622;AVGPOST=0.9964;LDAF=0.0439;ERATE=0.0007;AF=0.04;ASN_AF=0.09;AMR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-1.5,-19.1 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50690437 rs181278975 C A 100 PASS AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9952;LDAF=0.0037;VT=SNP;RSQ=0.4635;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.11,-0.67,-2.69 0|0:0:-0.48,-0.48,-0.48 0|0:0.3:-0.18,-0.47,-2.43 0|0:0.3:-0.48,-0.48,-0.48 22 50690512 rs77329779 A G 100 PASS ERATE=0.0004;LDAF=0.0431;AC=94;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.9903;AF=0.04;ASN_AF=0.09;AMR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.18,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.18,-0.47,-3.08 22 50690522 rs141136478 C G 100 PASS ERATE=0.0004;AA=C;LDAF=0.0083;AN=2184;AC=16;THETA=0.0008;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;RSQ=0.8796;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.22,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.06,-0.88,-5 1|0:1:-2.1,-0,-5 22 50690583 rs185820090 G C 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;RSQ=0.6918;VT=SNP;LDAF=0.0026;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9982;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.18,-0.47,-2.28 0|0:0:-0.05,-0.97,-5 0|0:0:-0.01,-1.91,-5 22 50690655 rs145367317 C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8694;AVGPOST=0.9993;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.04,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0,-1.99,-5 0|0:0:-0.02,-1.44,-5 22 50690703 rs71318412 T C 100 PASS RSQ=0.6062;AA=T;AN=2184;AC=8;THETA=0.0008;VT=SNP;LDAF=0.0061;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9941;AF=0.0037;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.63,-3.32 0|0:0.05:-0.22,-0.46,-1.26 0|0:0:-0.03,-1.19,-5 0|0:0:-0.06,-0.9,-5 22 50690730 rs116823937 G A 100 PASS AVGPOST=0.9966;LDAF=0.0132;AA=g;AN=2184;RSQ=0.888;AC=26;ERATE=0.0009;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.08,-0.79,-4 0|0:0:-0.19,-0.47,-2.25 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.06,-0.89,-5 22 50690750 rs189792779 C T 100 PASS AA=C;AN=2184;RSQ=0.5832;VT=SNP;THETA=0.0006;LDAF=0.0028;AC=5;AVGPOST=0.997;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;ASN_AF=0.0017;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.08,-0.8,-3.21 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.02,-1.31,-5 22 50690791 rs182355564 T G 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=T;AN=2184;VT=SNP;THETA=0.0006;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;RSQ=0.7919;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.07,-0.84,-5 22 50690835 rs188949841 C G 100 PASS 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AVGPOST=0.8651;ERATE=0.0063;AN=2184;AC=1487;THETA=0.0005;VT=SNP;AA=A;RSQ=0.8049;LDAF=0.6597;SNPSOURCE=LOWCOV;AF=0.68;ASN_AF=0.69;AMR_AF=0.7;AFR_AF=0.84;EUR_AF=0.56 GT:DS:GL 1|1:2:-4.7,-0.66,-0.11 1|0:0.9:-0.48,-0.48,-0.48 1|1:1.75:-0.48,-0.48,-0.48 0|0:0.2:-0.23,-0.41,-1.62 1|0:1:-0.48,-0.48,-0.48 22 50692853 rs2880034 G A 100 PASS THETA=0.0002;LDAF=0.659;AA=g;AN=2184;VT=SNP;RSQ=0.8456;AC=1471;ERATE=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.8912;AF=0.67;ASN_AF=0.64;AMR_AF=0.66;AFR_AF=0.88;EUR_AF=0.57 GT:DS:GL 1|1:1.95:-5,-0.65,-0.11 1|0:0.95:-0.48,-0.48,-0.48 1|1:1.55:-0.48,-0.48,-0.48 0|0:0.2:-0.21,-0.42,-1.9 1|0:1:-0.48,-0.48,-0.48 22 50692856 rs2009815 C T 100 PASS AA=T;AN=2184;RSQ=0.8478;THETA=0.0008;VT=SNP;LDAF=0.6639;SNPSOURCE=LOWCOV;AC=1492;AVGPOST=0.8932;ERATE=0.0007;AF=0.68;ASN_AF=0.66;AMR_AF=0.7;AFR_AF=0.88;EUR_AF=0.57 GT:DS:GL 1|1:1.95:-3.03,-0.46,-0.18 1|0:0.75:-0.48,-0.48,-0.48 1|1:1.85:-0.48,-0.48,-0.48 0|0:0.2:-0.2,-0.44,-2.06 1|0:1:-0.48,-0.48,-0.48 22 50692908 rs4077315 C T 100 PASS AA=C;LDAF=0.698;AN=2184;ERATE=0.0031;AVGPOST=0.9391;VT=SNP;RSQ=0.8956;AC=1556;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.71;ASN_AF=0.74;AMR_AF=0.72;AFR_AF=0.8;EUR_AF=0.63 GT:DS:GL 1|1:1.95:-2.93,-0.46,-0.19 1|0:1:-0.48,-0.48,-0.48 1|1:1.9:-0.48,-0.48,-0.48 1|0:1:-2.61,-0.45,-0.19 1|0:1:-0.2,-0.44,-2.66 22 50692966 rs2002766 G A 100 PASS AA=g;AN=2184;LDAF=0.6988;THETA=0.0005;VT=SNP;ERATE=0.0171;SNPSOURCE=LOWCOV;AC=1574;RSQ=0.834;AVGPOST=0.9072;AF=0.72;ASN_AF=0.76;AMR_AF=0.73;AFR_AF=0.8;EUR_AF=0.63 GT:DS:GL 1|1:1.95:-5,-1.08,-0.04 1|0:0.95:-0.13,-0.59,-2.96 1|1:1.4:-0.22,-0.42,-1.78 1|0:1:-4.1,-0,-2.75 1|0:0.65:-0.12,-0.61,-4.4 22 50692981 rs182049515 T C 100 PASS RSQ=0.6344;AA=T;AN=2184;AC=6;VT=SNP;THETA=0.0006;AVGPOST=0.9959;LDAF=0.0044;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.39,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.06,-5 22 50693120 rs185862996 C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.11,-0.65,-4.7 22 50693130 rs76976245 G A 100 PASS THETA=0.0021;ERATE=0.0004;AA=G;AN=2184;LDAF=0.0018;VT=SNP;RSQ=0.7324;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9987;AF=0.0018;ASN_AF=0.0035;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:-0,-2.52,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.11,-0.66,-4.7 22 50693158 rs13433665 C T 100 PASS THETA=0.0009;ERATE=0.0004;AA=C;AC=188;AN=2184;RSQ=0.9857;VT=SNP;AVGPOST=0.9971;LDAF=0.0861;SNPSOURCE=LOWCOV;AF=0.09;ASN_AF=0.12;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.71,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.65,-5 0|0:0:-0.07,-0.84,-5 22 50693204 rs148827239 C T 100 PASS AA=C;AN=2184;RSQ=0.7148;AVGPOST=0.999;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.91,-5 0|0:0:-0,-2.29,-5 0|0:0:-0.12,-0.64,-2.4 0|0:0:-0.06,-0.87,-5 0|0:0:-0.48,-0.48,-0.48 22 50693312 rs188999075 G A 100 PASS ERATE=0.0005;LDAF=0.0021;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.7882;SNPSOURCE=LOWCOV;AC=4;THETA=0.0013;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.03,-1.13,-5 22 50693340 rs5771280 A T 100 PASS AC=1783;ERATE=0.0004;AA=T;AN=2184;VT=SNP;AVGPOST=0.9989;LDAF=0.8152;RSQ=0.9973;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.82;ASN_AF=0.86;AMR_AF=0.78;AFR_AF=0.96;EUR_AF=0.7 GT:DS:GL 1|1:2:-5,-1.46,-0.02 1|0:1:-4,-0,-2.94 1|1:2:-5,-2.93,-0 1|0:1:-5,-0.04,-1.06 1|0:1:-4.7,-0,-5 22 50693380 rs137880367 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9991;RSQ=0.7887;SNPSOURCE=LOWCOV;THETA=0.0051;ERATE=0.0003;AC=3;LDAF=0.0017;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.98,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.39,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.01,-1.92,-5 22 50693474 rs181718127 C A 100 PASS ERATE=0.0005;AA=C;RSQ=0.5072;AN=2184;THETA=0.0008;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0.05:-0.22,-0.46,-1.3 0|0:0:-0.13,-0.6,-2.21 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2.27,-5 22 50693479 rs5771281 A G 100 PASS AA=C;AN=2184;VT=SNP;LDAF=0.8155;AVGPOST=0.9989;SNPSOURCE=LOWCOV;THETA=0.0013;RSQ=0.9971;AC=1784;ERATE=0.0003;AF=0.82;ASN_AF=0.86;AMR_AF=0.78;AFR_AF=0.96;EUR_AF=0.7 GT:DS:GL 1|1:2:-5,-2.72,-0 1|0:1:-2.39,-0.4,-0.22 1|1:2:-0.3,-0.43,-0.88 1|0:0.9:-0.02,-1.41,-5 1|0:1:-4.4,-0,-5 22 50693499 rs112218364 C T 100 PASS ERATE=0.0004;AA=C;AC=18;THETA=0.0014;AN=2184;VT=SNP;RSQ=0.9512;AVGPOST=0.9988;LDAF=0.0085;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.66,-5 0|0:0:-0.14,-0.56,-2.07 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.64,-5 22 50693501 rs76251763 G A 100 PASS THETA=0.0002;RSQ=0.7328;AA=G;AN=2184;AC=236;ERATE=0.054;VT=SNP;LDAF=0.127;AVGPOST=0.9267;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.09;AMR_AF=0.07;AFR_AF=0.17;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-3.74,-5 0|0:0.05:-0.08,-0.78,-3.28 0|0:0.4:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.86,-5 0|0:0:-0,-2.1,-5 22 50693517 rs144655674 G A 100 PASS AC=7;RSQ=0.9443;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0034;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.1,-5 0|0:0:-0.05,-1,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.15,-0.55,-2.99 0|0:0:-0.01,-1.72,-5 22 50693521 rs5771282 C T 100 PASS AC=1490;RSQ=0.8852;AA=C;LDAF=0.6768;AN=2184;AVGPOST=0.9351;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0258;AF=0.68;ASN_AF=0.71;AMR_AF=0.69;AFR_AF=0.76;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-3.44,-0 1|0:0.9:-0.11,-0.65,-2.6 1|1:1.7:-0.48,-0.48,-0.48 1|0:0.95:-0.15,-0.55,-3 1|0:1.5:-5,-1.56,-0.01 22 50693534 rs6010218 A G 100 PASS AC=1597;THETA=0.0004;LDAF=0.7198;AN=2184;ERATE=0.0089;VT=SNP;AA=A;AVGPOST=0.9542;SNPSOURCE=LOWCOV;RSQ=0.9204;AF=0.73;ASN_AF=0.75;AMR_AF=0.72;AFR_AF=0.86;EUR_AF=0.64 GT:DS:GL 1|1:2:-5,-2.61,-0 1|0:1:-3.74,-0.02,-1.38 1|1:1.6:-0.48,-0.48,-0.48 1|0:1.3:-0.48,-0.48,-0.48 1|0:1.35:-5,-0.2,-0.43 22 50693536 rs148253816 C T 100 PASS AA=C;THETA=0.0014;AN=2184;RSQ=0.0872;AVGPOST=0.9996;VT=SNP;AC=0;SNPSOURCE=LOWCOV;LDAF=0.0002;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0,-2.66,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.48 0|0:0:-0,-3.08,-5 22 50693538 rs6010219 G A 100 PASS AA=G;AN=2184;RSQ=0.9214;VT=SNP;AC=1663;ERATE=0.0092;AVGPOST=0.9577;LDAF=0.7565;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.76;ASN_AF=0.84;AMR_AF=0.73;AFR_AF=0.83;EUR_AF=0.67 GT:DS:GL 1|1:2:-5,-3.27,-0 1|0:1:-3.04,-0,-3.59 1|1:1.5:-2.6,-0.48,-0.18 1|0:1:-2.18,-0.01,-1.74 1|0:1:-5,-0,-2.43 22 50693554 rs6010220 A G 100 PASS AC=1783;ERATE=0.0004;AVGPOST=0.9986;AA=G;AN=2184;LDAF=0.8154;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9968;THETA=0.0003;AF=0.82;ASN_AF=0.86;AMR_AF=0.78;AFR_AF=0.96;EUR_AF=0.7 GT:DS:GL 1|1:2:-5,-4.4,-0 1|0:1:-5,-0.5,-0.17 1|1:2:-5,-1.62,-0.01 1|0:1:-4.22,-0,-3.28 1|0:1:-5,0,-5 22 50693558 rs74798979 C T 100 PASS AVGPOST=0.967;THETA=0.0004;AN=2184;ERATE=0.0173;VT=SNP;AA=c;RSQ=0.856;SNPSOURCE=LOWCOV;AC=202;LDAF=0.1007;AF=0.09;ASN_AF=0.12;AMR_AF=0.09;AFR_AF=0.12;EUR_AF=0.06 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.14,-5 0|0:0.5:-0.64,-0.11,-5 0|0:0.05:-0.03,-1.14,-5 0|0:0:-0,-4.7,-5 22 50693604 . G C 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50693619 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693699 . C T 100 PASS AN=2184;VT=SNP;AA=c;THETA=0.0006;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693704 . C T 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=c;THETA=0.0006;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693705 rs45606035 G A 100 PASS AVGPOST=1;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0018;VT=SNP;RSQ=1;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693740 . C T 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693741 . G A 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693764 . C T 100 PASS THETA=0.0009;AVGPOST=1;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693889 rs2066770 G A 100 PASS AVGPOST=0.9994;LDAF=0.0371;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AC=81;RSQ=0.9942;ERATE=0.0003;AF=0.04;ASN_AF=0.08;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693899 . G A 100 PASS AA=g;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693919 rs55861809 C T 100 PASS ERATE=0.0004;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=11;LDAF=0.005;THETA=0.0003;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693934 rs62239359 G A 100 PASS AVGPOST=1;LDAF=0.0009;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50693939 . G C 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9594;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0006;AC=3;AVGPOST=0.9999;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50694083 rs180690992 C T 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.8148;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50694131 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50694251 . T C 100 PASS AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;THETA=0.0034;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50694297 rs1129880 A G 100 PASS AVGPOST=0.9936;AC=1726;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.0075;AA=A;LDAF=0.7896;RSQ=0.988;AF=0.79;ASN_AF=0.86;AMR_AF=0.77;AFR_AF=0.88;EUR_AF=0.7 GT:DS:GL 1|1:2:-5,-5,0 1|0:1:-5,0,-5 1|1:2:-5,-5,0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50694528 rs138065172 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50694529 rs2230823 G A 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.9682;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0014;AC=3;AVGPOST=0.9999;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50694568 . G A 100 PASS THETA=0.0009;AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50694676 . G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695045 . C T 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695167 rs114938273 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;RSQ=0.8188;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.003;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.08,-0.77,-3.08 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50695270 rs5771284 A C 100 PASS AA=C;AVGPOST=0.9966;AN=2184;ERATE=0.0009;THETA=0.0005;VT=SNP;AC=1757;RSQ=0.9924;LDAF=0.8024;SNPSOURCE=LOWCOV;AF=0.8;ASN_AF=0.87;AMR_AF=0.77;AFR_AF=0.91;EUR_AF=0.7 GT:DS:GL 1|1:2:-5,-5,0 1|0:1:-0.05,-0.93,-4.7 1|1:2:-5,-0.46,-0.18 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50695311 rs79874643 G A 100 PASS LDAF=0.0047;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;AC=10;THETA=0.0006;RSQ=0.9629;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0046;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.47,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-3.34,-5 0|0:0:0,-5,-5 22 50695355 rs140699276 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.8138;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 22 50695370 rs2072876 G A 100 PASS LDAF=0.043;AC=94;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.9984;AF=0.04;ASN_AF=0.09;AMR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50695379 rs144750295 G A 100 PASS AC=7;THETA=0.0009;LDAF=0.0033;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9666;ERATE=0.0006;AF=0.0032;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695401 . G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695412 . T G 100 PASS AVGPOST=1;AA=T;AN=2184;RSQ=0;THETA=0.0008;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695427 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695439 rs144718926 A T 100 PASS RSQ=0.9882;AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0019;AA=A;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695488 rs185994207 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.38,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0,-2.16,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695500 rs2066773 G A 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9796;LDAF=0.0098;VT=SNP;AC=21;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-3.36,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695503 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0,-3.47,-5 0|0:0:-0.01,-1.87,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695506 . C T 100 PASS AA=C;AN=2184;RSQ=0.6781;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695586 . G T 100 PASS RSQ=0.9049;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695593 . T A 100 PASS RSQ=0.9181;AA=T;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695594 rs191191851 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695615 . C G 100 PASS RSQ=0.8665;AA=C;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50695651 rs148564423 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=6;VT=SNP;RSQ=0.9852;LDAF=0.0028;ERATE=0.0003;AVGPOST=0.9999;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 22 50695673 rs142903546 C A 100 PASS AA=C;LDAF=0.0103;AN=2184;AVGPOST=0.9996;VT=SNP;AC=22;RSQ=0.9853;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.01;ASN_AF=0.04;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.01,-5 0|0:0:-0.14,-0.55,-5 0|0:0:-0,-2.91,-5 0|0:0:0,-5,-5 22 50695687 rs151118032 A G 100 PASS THETA=0.0014;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.84,-5 0|0:0:-0.1,-0.69,-5 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.85,-5 0|0:0:0,-5,-5 22 50695707 rs111326730 C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:-0,-2.97,-5 0|0:0:-0,-2.14,-5 0|0:0:-0,-2.22,-5 0|0:0:-0,-4.4,-5 22 50695816 rs143887978 G A 100 PASS AA=G;AN=2184;AC=8;RSQ=0.9767;LDAF=0.0037;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.64,-5 0|0:0:-0.01,-1.51,-5 0|0:0.05:-1.53,-0.01,-2.85 0|0:0:-0.02,-1.41,-5 0|0:0:-0.17,-0.49,-3.49 22 50695908 rs5771285 G T 100 PASS ERATE=0.0005;THETA=0.0002;AA=G;AN=2184;VT=SNP;AC=1780;RSQ=0.994;SNPSOURCE=LOWCOV;AVGPOST=0.9974;LDAF=0.8138;AF=0.82;ASN_AF=0.87;AMR_AF=0.78;AFR_AF=0.95;EUR_AF=0.7 GT:DS:GL 1|1:2:-5,-1.08,-0.04 1|0:1:-5,-0.96,-0.05 1|1:2:-5,-1,-0.05 1|0:1:-4.7,-0.02,-1.37 1|0:1:-2.84,-0,-5 22 50695946 rs5771111 C G 100 PASS AC=1788;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;THETA=0.0006;RSQ=0.9956;SNPSOURCE=LOWCOV;LDAF=0.8175;ERATE=0.0003;AF=0.82;ASN_AF=0.87;AMR_AF=0.78;AFR_AF=0.96;EUR_AF=0.7 GT:DS:GL 1|1:2:-5,-1.69,-0.01 1|0:1:-4.7,-0.05,-0.96 1|1:2:-5,-1.63,-0.01 1|0:1:-5,-0.55,-0.14 1|0:1:-2.42,-0,-4 22 50696053 rs146433111 T C 100 PASS ERATE=0.0004;RSQ=0.8367;AA=T;AN=2184;AC=13;THETA=0.0005;VT=SNP;LDAF=0.0063;SNPSOURCE=LOWCOV;AVGPOST=0.9974;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.21,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.03,-1.13,-5 22 50696069 rs183783364 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6432;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.14,-0.58,-2.09 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.11,-0.66,-4.7 22 50696294 rs150119714 C G 100 PASS AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;AC=15;RSQ=0.9749;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;LDAF=0.0069;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.99,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0,-2.56,-5 22 50696515 rs73435298 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9993;LDAF=0.0014;SNPSOURCE=LOWCOV;RSQ=0.8003;THETA=0.0007;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.24,-5 0|0:0:-0.22,-0.46,-1.34 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-2.14,-5 0|0:0:-0.11,-0.65,-5 22 50696623 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.003;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50696639 . C T 100 PASS AN=2184;VT=SNP;AA=c;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50696644 rs138424244 C T 100 PASS AC=7;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0032;THETA=0.0005;VT=SNP;ERATE=0.0003;RSQ=0.9932;AF=0.0032;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50696648 rs2235355 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9979;VT=SNP;AC=379;RSQ=0.9946;LDAF=0.1738;THETA=0.0007;ERATE=0.0003;AF=0.17;ASN_AF=0.24;AMR_AF=0.28;AFR_AF=0.07;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50696662 rs73187284 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0006;RSQ=0.9981;AC=635;ERATE=0.0003;LDAF=0.2901;AF=0.29;ASN_AF=0.39;AMR_AF=0.2;AFR_AF=0.14;EUR_AF=0.36 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50696678 rs34422484 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9983;LDAF=0.0851;THETA=0.0006;AC=186;ERATE=0.0003;AF=0.09;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.09;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50696724 . C T 100 PASS ERATE=0.0005;AVGPOST=1;LDAF=0.0009;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50696827 rs73891203 C T 100 PASS AA=C;THETA=0.0002;AN=2184;AC=104;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.998;LDAF=0.0476;AF=0.05;AMR_AF=0.01;AFR_AF=0.2 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.73,-5 0|0:0:-0,-3.32,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50696900 rs114912815 C T 100 PASS LDAF=0.0036;AN=2184;AC=8;AVGPOST=0.9996;VT=SNP;AA=c;THETA=0.0006;RSQ=0.9606;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.22,-0.46,-1.31 0|0:0:-0.02,-1.28,-5 0|0:0:-0,-3.19,-5 0|0:0:-0,-3.66,-5 22 50696974 rs148879163 C T 100 PASS AC=7;AA=C;AN=2184;VT=SNP;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8748;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.0032;ASN_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.11,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.11,-0.63,-4 0|0:0:-0.02,-1.34,-5 22 50696984 rs143525456 T C 100 PASS LDAF=0.0013;AA=T;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.8675;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.94,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.19,-0.47,-2.11 0|0:0:-0.03,-1.11,-5 22 50697032 rs74974905 G A 100 PASS ERATE=0.0004;LDAF=0.0058;AA=G;AN=2184;THETA=0.0031;VT=SNP;AC=10;AVGPOST=0.9976;RSQ=0.8464;SNPSOURCE=LOWCOV;AF=0.0046;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.21,-0.44,-1.79 0|0:0:-0.04,-1.11,-5 22 50697119 rs742184 C T 100 PASS AA=C;RSQ=0.9843;AN=2184;VT=SNP;AVGPOST=0.9922;AC=540;SNPSOURCE=LOWCOV;LDAF=0.2491;ERATE=0.0007;THETA=0.0003;AF=0.25;ASN_AF=0.26;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.28 GT:DS:GL 0|1:1:-1.74,-0.01,-5 1|0:1:-4.7,-0.19,-0.45 1|0:1:-0.2,-0.45,-2.1 0|0:0:-0,-2.24,-5 0|0:0:-0.08,-0.76,-5 22 50697155 rs117095205 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.7027;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0.05:-0.15,-0.55,-1.9 0|0:0:-0.03,-1.14,-5 0|0:0:-0.04,-1.06,-5 22 50697213 rs76487910 G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;AC=31;THETA=0.003;RSQ=0.9802;SNPSOURCE=LOWCOV;LDAF=0.0144;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.04,-1.1,-5 22 50697374 rs112649731 A G 100 PASS ERATE=0.0004;THETA=0.0032;RSQ=0.9565;AN=2184;AC=40;AVGPOST=0.9981;VT=SNP;AA=A;LDAF=0.0189;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.91,-5 0|0:0:-0,-2.06,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-2.62,-5 0|0:0:-0.01,-1.62,-5 22 50697455 rs190359664 G T 100 PASS THETA=0.0022;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6913;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0.07,-0.83,-4.22 0|0:0:-0.05,-0.98,-5 0|0:0:-0,-2.33,-5 0|0:0:-0.03,-1.13,-5 22 50697509 rs143767309 C T 100 PASS THETA=0.0009;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;AC=10;RSQ=0.966;SNPSOURCE=LOWCOV;LDAF=0.0048;ERATE=0.0003;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.39,-5 22 50697518 rs1076649 T C 100 PASS AC=991;AA=C;AN=2184;THETA=0.0038;VT=SNP;RSQ=0.9897;AVGPOST=0.9928;LDAF=0.4533;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.45;ASN_AF=0.49;AMR_AF=0.57;AFR_AF=0.5;EUR_AF=0.34 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|0:1:-5,-0,-2.61 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-3.52,-5 22 50697636 rs1076650 G A 100 PASS ERATE=0.0014;AC=923;AVGPOST=0.9888;AA=G;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;LDAF=0.423;RSQ=0.9841;AF=0.42;ASN_AF=0.48;AMR_AF=0.5;AFR_AF=0.43;EUR_AF=0.34 GT:DS:GL 0|1:1:-5,-0,-3.34 1|0:1:-5,-0,-4.7 1|0:1:-5,0,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.01,-1.68,-5 22 50697691 rs146115920 C T 100 PASS THETA=0.0009;ERATE=0.0005;LDAF=0.0041;AA=C;AN=2184;VT=SNP;AC=9;RSQ=0.7774;SNPSOURCE=LOWCOV;AVGPOST=0.9974;AF=0.0041;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-2.26,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.63,-5 22 50697711 rs139061504 G A 100 PASS LDAF=0.0042;AA=G;AN=2184;AC=8;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;RSQ=0.8607;AF=0.0037;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.11,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.81,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.69,-5 22 50697911 rs142965199 G A 100 PASS AC=7;AVGPOST=0.9986;AA=G;AN=2184;LDAF=0.0037;VT=SNP;RSQ=0.8737;THETA=0.0066;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.18,-0.46,-2.43 0|0:0:-0.06,-0.89,-5 22 50698000 rs115160725 G C 100 PASS ERATE=0.0005;LDAF=0.0047;AA=G;AN=2184;RSQ=0.7702;AC=8;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9974;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.91,-5 0|0:0:-0.09,-0.71,-5 22 50698024 rs116702369 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;VT=SNP;LDAF=0.0064;RSQ=0.8094;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=11;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.17,-0.49,-2.75 0|0:0:-0.06,-0.89,-5 22 50698110 rs182956062 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;LDAF=0.0037;AC=6;THETA=0.0005;VT=SNP;RSQ=0.7973;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.15,-0.54,-3.18 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.85,-5 22 50698129 rs150854219 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;AC=26;AVGPOST=0.9942;VT=SNP;RSQ=0.8201;THETA=0.0066;SNPSOURCE=LOWCOV;LDAF=0.0135;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.01,-5 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.85 22 50698157 rs2267983 C A 100 PASS RSQ=0.9018;AA=C;ERATE=0.0074;AN=2184;VT=SNP;LDAF=0.4399;SNPSOURCE=LOWCOV;AC=961;THETA=0.0063;AVGPOST=0.9315;AF=0.44;ASN_AF=0.48;AMR_AF=0.57;AFR_AF=0.49;EUR_AF=0.32 GT:DS:GL 0|1:1:-2.05,-0,-4 1|0:1:-2.82,-0.47,-0.18 0|0:0.45:-0.24,-0.41,-1.5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.97,-5 22 50698217 rs186830971 G A 100 PASS RSQ=0.4751;AA=G;AN=2184;AVGPOST=0.9947;VT=SNP;THETA=0.0056;LDAF=0.0039;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0007;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.04,-1.05,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.7 22 50698337 rs2267984 C T 100 PASS ERATE=0.0013;AA=C;AVGPOST=0.9561;AN=2184;VT=SNP;THETA=0.0028;RSQ=0.9054;SNPSOURCE=LOWCOV;AC=452;LDAF=0.2147;AF=0.21;ASN_AF=0.29;AMR_AF=0.3;AFR_AF=0.1;EUR_AF=0.17 GT:DS:GL 0|0:0.05:-0.15,-0.54,-3.32 1|0:0.85:-0.19,-0.45,-2.18 0|0:0.15:-0.1,-0.69,-3.55 0|0:0:-0.19,-0.46,-2.36 0|0:0:-0.48,-0.48,-0.48 22 50698452 rs2267985 T G 100 PASS RSQ=0.6012;THETA=0.0047;ERATE=0.0313;AA=G;AN=2184;VT=SNP;LDAF=0.4691;AC=1059;SNPSOURCE=LOWCOV;AVGPOST=0.7515;AF=0.48;ASN_AF=0.44;AMR_AF=0.58;AFR_AF=0.46;EUR_AF=0.49 GT:DS:GL 0|0:0:-0.11,-0.64,-4.22 0|1:1.2:-0.48,-0.48,-0.48 1|0:1.05:-0.48,-0.48,-0.48 0|1:0.95:-0.48,-0.48,-0.48 0|1:0.9:-0.48,-0.48,-0.48 22 50698586 rs115334265 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.0093;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.939;AC=19;THETA=0.0003;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.92,-5 0|0:0:-0.06,-0.86,-5 22 50698652 rs67428259 GGGACGGGGCACTTTGCTGGT G 501 PASS RSQ=0.6707;LDAF=0.5799;AN=2184;AC=1321;VT=INDEL;AVGPOST=0.7909;ERATE=0.0244;THETA=0.0052;AF=0.6;ASN_AF=0.51;AMR_AF=0.7;AFR_AF=0.61;EUR_AF=0.63 GT:DS:GL 0|1:1:-15.3,0,-26.9 1|1:1.75:0,0,0 1|0:0.8:0,0,0 0|1:0.8:0,0,0 0|1:1:0,0,0 22 50698731 rs2267986 A G 100 PASS ERATE=0.0014;LDAF=0.6324;AA=G;AN=2184;RSQ=0.9602;VT=SNP;AVGPOST=0.975;SNPSOURCE=LOWCOV;AC=1387;THETA=0.0007;AF=0.64;ASN_AF=0.58;AMR_AF=0.74;AFR_AF=0.61;EUR_AF=0.65 GT:DS:GL 0|1:1:-5,0,-5 1|1:2:-5,-0.72,-0.09 1|0:1:-0.12,-0.62,-3.15 0|1:1:-2.59,-0.01,-1.64 0|1:0.95:-0.05,-0.97,-5 22 50698788 rs191712891 A T 100 PASS ERATE=0.0005;AN=2184;LDAF=0.0018;VT=SNP;THETA=0.0033;RSQ=0.4315;AA=A;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.19 0|0:0:-0.03,-1.17,-5 0|0:0:-0.2,-0.44,-2.67 22 50698895 rs144357998 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;LDAF=0.0072;RSQ=0.9593;AC=15;SNPSOURCE=LOWCOV;THETA=0.0097;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.45,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.96,-5 22 50698935 rs113592000 C T 100 PASS THETA=0.005;ERATE=0.0004;AA=C;AN=2184;LDAF=0.0117;VT=SNP;AC=24;AVGPOST=0.9971;SNPSOURCE=LOWCOV;RSQ=0.9069;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.02,-1.38,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.2,-0.48,-1.44 0|0:0:-0.02,-1.44,-5 0|0:0:-0.02,-1.38,-5 22 50699164 rs77551271 G A 100 PASS AN=2184;VT=SNP;AVGPOST=0.9928;SNPSOURCE=LOWCOV;AA=a;THETA=0.0051;ERATE=0.0006;AC=39;RSQ=0.8516;LDAF=0.0198;AF=0.02;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.22,-0.46,-1.25 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.87,-5 22 50699331 rs3817818 C G 100 PASS THETA=0.0002;AN=2184;AC=966;LDAF=0.4414;VT=SNP;AVGPOST=0.9724;AA=c;ERATE=0.0016;RSQ=0.9599;SNPSOURCE=LOWCOV;AF=0.44;ASN_AF=0.33;AMR_AF=0.49;AFR_AF=0.42;EUR_AF=0.52 GT:DS:GL 0|1:1:-5,0,-5 1|0:0.95:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.07,-0.82,-5 0|0:0.1:-0.11,-0.65,-4.7 22 50699399 rs183420433 G T 100 PASS ERATE=0.0004;LDAF=0.0013;AA=g;AN=2184;RSQ=0.4162;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;AVGPOST=0.9982;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.56,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.09,-0.71,-5 0|0:0:-0.01,-1.63,-5 22 50699404 rs2272855 C T 100 PASS AC=1013;RSQ=0.9555;AN=2184;THETA=0.004;VT=SNP;ERATE=0.0019;LDAF=0.465;SNPSOURCE=LOWCOV;AVGPOST=0.9685;AA=t;AF=0.46;ASN_AF=0.34;AMR_AF=0.48;AFR_AF=0.52;EUR_AF=0.51 GT:DS:GL 0|1:1:-4.7,-0,-5 1|0:0.95:-0.21,-0.46,-1.36 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.04,-1.03,-5 22 50699477 rs3830751 AC A 323 PASS AVGPOST=0.9055;AN=2184;AC=993;ERATE=0.0044;VT=INDEL;THETA=0.0025;LDAF=0.4515;RSQ=0.8623;AF=0.45;ASN_AF=0.34;AMR_AF=0.48;AFR_AF=0.48;EUR_AF=0.52 GT:DS:GL 0|1:1:-8.7,0,-5.5 1|0:0.75:0,0,0 0|0:0.1:0,0,0 0|1:0.75:0,0,0 0|1:0.65:0,0,0 22 50699487 rs2272856 G C 100 PASS AC=1484;AVGPOST=0.9568;LDAF=0.6697;AN=2184;VT=SNP;AA=c;THETA=0.0071;RSQ=0.929;SNPSOURCE=LOWCOV;ERATE=0.0041;AF=0.68;ASN_AF=0.58;AMR_AF=0.79;AFR_AF=0.62;EUR_AF=0.74 GT:DS:GL 0|1:1:-5,-0.07,-0.8 1|1:2:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 0|1:1:-4.22,-0,-3.22 0|1:1.1:-0.48,-0.48,-0.48 22 50699625 . 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GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-2.1,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.02,-1.4,-5 22 50702796 rs61760602 C T 100 PASS AVGPOST=0.9986;LDAF=0.0133;AN=2184;AC=29;VT=SNP;AA=c;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.963;AF=0.01;AMR_AF=0.01;AFR_AF=0.05;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.1,-0.68,-4.7 22 50702876 rs186140576 A T 100 PASS ERATE=0.0004;RSQ=0.627;AN=2184;THETA=0.0005;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AA=a;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.12,-0.63,-3.28 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.06,-0.91,-5 0|0:0:-0.2,-0.45,-2.04 22 50702970 rs2072877 C T 100 PASS ERATE=0.0004;RSQ=0.9762;AN=2184;THETA=0.0005;VT=SNP;AA=c;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=106;LDAF=0.0497;AF=0.05;ASN_AF=0.11;AMR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.07,-0.8,-3.4 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.06,-0.88,-5 0|0:0:-0.06,-0.89,-5 22 50703059 rs2072878 A G 100 PASS LDAF=0.0494;AN=2184;VT=SNP;AVGPOST=0.9976;RSQ=0.981;SNPSOURCE=LOWCOV;AA=a;AC=106;ERATE=0.0003;THETA=0.0003;AF=0.05;ASN_AF=0.11;AMR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.04,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.03,-1.11,-5 22 50703179 rs190901415 C T 100 PASS THETA=0.0015;AN=2184;LDAF=0.001;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.93,-5 0|0:0:-0,-2.45,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.02,-1.38,-5 22 50703205 rs34349740 CAT C 910 PASS AC=12;ERATE=0.0005;AN=2184;VT=INDEL;AVGPOST=0.9971;THETA=0.0025;LDAF=0.0063;RSQ=0.8223;AF=0.01;ASN_AF=0.02;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-1.5,-29.9 0|0:0:0,-0.6,-12 0|0:0:0,-1.2,-24.4 0|0:0:0,0,0 0|0:0:0,-0.3,-6.1 22 50703253 rs34429046 G C 100 PASS ERATE=0.0004;AA=g;AN=2184;AC=8;LDAF=0.0037;THETA=0.0005;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9558;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.15,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.46,-5 0|0:0:0,-5,-5 22 50703501 rs148083668 G A 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-3.01,-5 0|0:0:0,-5,-5 22 50703560 rs41283473 G A 100 PASS THETA=0.0004;LDAF=0.0047;AA=G;AN=2184;RSQ=0.9771;VT=SNP;AC=10;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0046;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 22 50703572 rs10626765 C CAG 1217 PASS RSQ=0.9722;THETA=0.0004;AN=2184;VT=INDEL;AVGPOST=0.9831;ERATE=0.0008;LDAF=0.6914;AC=1511;AF=0.69;ASN_AF=0.57;AMR_AF=0.8;AFR_AF=0.66;EUR_AF=0.75 GT:DS:GL 0|1:0.75:0,-0.6,-8.8 1|1:2:-4.3,-0.6,0 1|0:0.75:0,0,0 0|1:1:0,0,0 0|1:1:0,0,0 22 50703672 rs61760600 G A 100 PASS THETA=0.0026;AA=G;AN=2184;AC=8;VT=SNP;RSQ=0.9532;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.54,-5 0|0:0:-0.03,-1.25,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50703710 . G A 100 PASS RSQ=0.9882;AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0027;LDAF=0.0019;SNPSOURCE=EXOME;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.06,-5 0|0:0:-0,-2.15,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50703849 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0014;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50703850 . G A 100 PASS AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0025;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-1.99,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50703960 rs185822823 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50704028 rs33932986 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=37;VT=SNP;THETA=0.0011;AVGPOST=0.9998;RSQ=0.9938;LDAF=0.017;ERATE=0.0003;AF=0.02;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50704075 . G C 100 PASS THETA=0.0032;RSQ=0.8692;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;LDAF=0.0008;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50704267 rs9617128 C T 100 PASS THETA=0.0009;ERATE=0.0005;AA=C;AN=2184;RSQ=0.9953;AVGPOST=0.9975;LDAF=0.6878;VT=SNP;SNPSOURCE=LOWCOV;AC=1502;AF=0.69;ASN_AF=0.59;AMR_AF=0.8;AFR_AF=0.63;EUR_AF=0.75 GT:DS:GL 0|1:1:-5,-0,-3.59 1|1:2:-5,-1.95,-0 1|0:1:-5,-0,-2.81 0|1:1:-2.52,-0,-5 0|1:1:-0.06,-0.91,-5 22 50704357 rs11704249 C T 100 PASS AA=C;AC=768;AN=2184;LDAF=0.3869;VT=SNP;RSQ=0.5804;ERATE=0.0585;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.7824;AF=0.35;ASN_AF=0.32;AMR_AF=0.4;AFR_AF=0.25;EUR_AF=0.42 GT:DS:GL 0|1:1:-2.3,-0.01,-1.99 1|0:0.7:-0.48,-0.48,-0.48 1|0:0.85:-0.12,-0.62,-2.28 0|1:0.6:-0.18,-0.47,-2.16 0|1:1.1:-3.55,-0.48,-0.18 22 50704383 rs61760599 G A 100 PASS AC=260;AA=G;AN=2184;RSQ=0.4697;VT=SNP;LDAF=0.1921;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.8125;ERATE=0.0509;AF=0.12;ASN_AF=0.1;AMR_AF=0.11;AFR_AF=0.09;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0.45:-0.29,-0.43,-0.93 0|0:0.15:-0.25,-0.45,-1.11 0|0:0.4:-0.18,-0.47,-2.43 0|0:0.1:-0.18,-0.47,-3.06 22 50704402 rs80139320 C T 100 PASS AC=603;AVGPOST=0.8262;LDAF=0.3215;AA=C;ERATE=0.0797;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.6028;AF=0.28;ASN_AF=0.23;AMR_AF=0.29;AFR_AF=0.3;EUR_AF=0.29 GT:DS:GL 0|0:0.2:-0.06,-0.92,-5 0|1:0.6:-0.23,-0.45,-1.26 1|0:1.2:-2.38,-0.46,-0.19 0|0:0.15:-0.18,-0.47,-2.44 0|0:0.25:-0.1,-0.67,-5 22 50704428 rs5771289 G A 100 PASS AC=1319;LDAF=0.5981;AA=G;AN=2184;ERATE=0.0459;RSQ=0.8237;VT=SNP;AVGPOST=0.9005;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.6;ASN_AF=0.55;AMR_AF=0.66;AFR_AF=0.57;EUR_AF=0.64 GT:DS:GL 0|1:0.95:-2.04,-0,-4 1|1:1.8:-5,-0.76,-0.08 1|0:1:-1.83,-0.01,-2.11 0|1:0.75:-0.19,-0.46,-2.41 0|1:1:-2.72,-0.01,-1.89 22 50704525 rs188410889 G T 100 PASS AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;RSQ=0.8143;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.91,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-3.49,-5 22 50704568 rs142107539 C G 100 PASS THETA=0.0022;AN=2184;AVGPOST=0.9997;RSQ=0.9139;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0012;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.42,-5 0|0:0:-0,-3.52,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.39,-5 22 50704655 rs144167518 G A 100 PASS RSQ=0.7959;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.21,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0,-2.16,-5 22 50704661 rs2076139 T C 100 PASS AC=1525;RSQ=0.9982;LDAF=0.6983;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0029;ERATE=0.0003;AA=N;AF=0.7;ASN_AF=0.59;AMR_AF=0.8;AFR_AF=0.67;EUR_AF=0.75 GT:DS:GL 0|1:1:-4.4,-0,-5 1|1:2:-5,-5,0 1|0:1:-5,0,-5 0|1:1:-3.74,-0,-5 0|1:1:-5,0,-5 22 50704871 rs182944021 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;AVGPOST=0.9997;LDAF=0.0015;VT=SNP;THETA=0.0027;SNPSOURCE=LOWCOV;AC=3;RSQ=0.9134;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.74,-5 0|0:0:-0,-2.89,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50704889 rs36014260 G A 100 PASS AC=7;LDAF=0.0033;THETA=0.0002;RSQ=0.9621;AA=g;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50704951 . A C 100 PASS AVGPOST=1;AN=2184;VT=SNP;THETA=0.0017;SNPSOURCE=EXOME;RSQ=1;AC=1;AA=a;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50704956 rs187709335 G T 100 PASS AVGPOST=1;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;THETA=0.0016;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.19,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50704979 . C T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=c;LDAF=0.0007;RSQ=0.8078;SNPSOURCE=EXOME;AC=1;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.18,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50705047 . G A 100 PASS AA=g;AN=2184;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.789;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50705059 rs742185 A G 100 PASS AC=1529;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9977;VT=SNP;THETA=0.0006;ERATE=0.0016;AVGPOST=0.9988;LDAF=0.7002;AF=0.7;ASN_AF=0.59;AMR_AF=0.81;AFR_AF=0.67;EUR_AF=0.75 GT:DS:GL 0|1:1:-5,0,-5 1|1:2:-5,-5,0 1|0:1:-5,0,-5 0|1:1:-5,0,-5 0|1:1:-5,0,-5 22 50705060 rs192553473 C T 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.809;AA=c;LDAF=0.0006;THETA=0.0019;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50705083 rs150060830 C T 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=c;AC=1;THETA=0.007;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50705127 rs185075384 T C 100 PASS AVGPOST=1;AN=2184;RSQ=0.9844;VT=SNP;THETA=0.0028;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AA=t;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-3.12,-5 0|0:0:-0,-3.34,-5 0|0:0:-0,-4.7,-5 22 50705180 rs35792846 A G 100 PASS ERATE=0.0004;AVGPOST=0.9985;AN=2184;AC=29;THETA=0.0005;RSQ=0.9564;VT=SNP;SNPSOURCE=LOWCOV;AA=a;LDAF=0.0135;AF=0.01;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.1,-0.69,-2.66 0|0:0:-0,-2.41,-5 0|0:0:0,-5,-5 22 50705304 rs760747 C T 100 PASS THETA=0.0047;AN=2184;VT=SNP;AA=c;LDAF=0.2325;SNPSOURCE=LOWCOV;AC=506;ERATE=0.0028;AVGPOST=0.9978;RSQ=0.995;AF=0.23;ASN_AF=0.24;AMR_AF=0.37;AFR_AF=0.12;EUR_AF=0.24 GT:DS:GL 0|0:0:-0,-3.25,-5 0|1:1:-5,-0,-3.47 1|0:1:-5,-0.18,-0.47 0|1:1:-5,0,-5 0|1:1:-5,0,-5 22 50705466 rs760748 A G 100 PASS AVGPOST=0.971;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.7061;VT=SNP;LDAF=0.9612;ERATE=0.0195;AC=2113;THETA=0.0003;AF=0.97;ASN_AF=0.98;AMR_AF=0.98;AFR_AF=0.95;EUR_AF=0.97 GT:DS:GL 1|1:2:-5,-3.49,-0 1|1:1.65:-5,-0.19,-0.46 1|1:1.8:-5,-0.12,-0.61 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50705528 rs145478446 C T 100 PASS AVGPOST=0.9985;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0026;AA=c;AC=4;ERATE=0.0003;RSQ=0.7903;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.08,-0.79,-3.32 0|0:0:-0.1,-0.68,-2.63 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.85,-5 22 50705547 rs2066777 G C 100 PASS LDAF=0.0088;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.973;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AC=19;AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.3,-5 0|0:0:-0.05,-0.96,-4.22 0|0:0:-0.1,-0.7,-2.73 0|0:0:-0,-4.22,-5 0|0:0:-0,-4,-5 22 50705730 rs148397210 T C 100 PASS AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.7664;THETA=0.0089;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AA=t;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.09,-0.75,-5 0|0:0:-0,-2.97,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.05,-1,-5 22 50705749 . C T 100 PASS AVGPOST=0.9983;LDAF=0.0016;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;THETA=0.001;RSQ=0.5151;AC=2;ERATE=0.0007;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.07,-0.81,-5 0|0:0:-0.13,-0.6,-2.3 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.03,-5 0|0:0:-0.04,-1.02,-5 22 50705821 rs2066762 G A 100 PASS AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=76;THETA=0.0027;AVGPOST=0.9998;ERATE=0.0003;RSQ=0.9975;LDAF=0.0348;AF=0.03;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.18,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-1.99,-5 22 50705921 rs35998394 G A 100 PASS ERATE=0.0004;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9578;AVGPOST=0.9989;THETA=0.0037;LDAF=0.0097;AC=21;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.24,-5 0|0:0:-0,-2.39,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.07,-5 22 50705947 . C T 100 PASS THETA=0.0009;ERATE=0.0005;LDAF=0.0035;AN=2184;RSQ=0.7321;AC=6;VT=SNP;AA=c;SNPSOURCE=EXOME;AVGPOST=0.9974;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0.3,-0.43,-0.89 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.05,-0.96,-5 22 50706150 rs35325850 TG T 126 PASS AN=2184;VT=INDEL;THETA=0.0005;RSQ=0.6809;LDAF=0.0911;AC=156;AVGPOST=0.9191;ERATE=0.0037;AF=0.07;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.26;EUR_AF=0.01 GT:DS:GL 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50706381 rs36083586 G A 100 PASS AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9913;AC=263;ERATE=0.0008;RSQ=0.9673;LDAF=0.1221;AF=0.12;ASN_AF=0.11;AMR_AF=0.18;AFR_AF=0.09;EUR_AF=0.11 GT:DS:GL 0|1:1:-5,-0.04,-1.01 0|0:0:-0.11,-0.64,-3.34 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.78,-5 0|0:0:-0.09,-0.72,-5 22 50706546 rs2076140 A C 100 PASS ERATE=0.0014;AVGPOST=0.979;AN=2184;RSQ=0.9627;VT=SNP;AC=1530;THETA=0.0019;SNPSOURCE=LOWCOV;AA=a;LDAF=0.6975;AF=0.7;ASN_AF=0.65;AMR_AF=0.83;AFR_AF=0.65;EUR_AF=0.71 GT:DS:GL 0|1:1:-5,-0.2,-0.43 0|1:1.1:-0.48,-0.48,-0.48 1|0:0.95:-0.22,-0.46,-1.26 0|1:1:-5,-0.03,-1.2 0|1:0.85:-0.48,-0.48,-0.48 22 50706662 rs61760594 G T 100 PASS RSQ=0.6112;LDAF=0.0035;AA=g;AN=2184;AC=6;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0006;AF=0.0027;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.9,-5 0|0:0:-0.11,-0.64,-4.1 22 50706688 rs184610155 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.744;AC=5;THETA=0.0012;SNPSOURCE=LOWCOV;LDAF=0.0031;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.22,-0.42,-1.69 22 50706691 rs742186 A G 100 PASS RSQ=0.9759;LDAF=0.4688;AN=2184;VT=SNP;THETA=0.0006;AC=1021;ERATE=0.0008;AVGPOST=0.984;SNPSOURCE=LOWCOV;AA=a;AF=0.47;ASN_AF=0.42;AMR_AF=0.58;AFR_AF=0.28;EUR_AF=0.56 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|1:1.05:-2.33,-0.1,-0.69 1|0:1:-0.22,-0.46,-1.26 0|1:1:-0.11,-0.64,-4.4 0|1:1:-0.13,-0.59,-3.59 22 50706879 rs189926738 G A 100 PASS RSQ=0.8259;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9996;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.36,-5 22 50706921 rs180679923 G A 100 PASS THETA=0.0021;ERATE=0.0005;RSQ=0.8579;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.04,-1.11,-5 0|0:0:-0.02,-1.37,-5 22 50707012 rs35018662 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;AC=127;LDAF=0.0585;RSQ=0.9708;SNPSOURCE=LOWCOV;AVGPOST=0.9955;THETA=0.0003;AF=0.06;ASN_AF=0.08;AMR_AF=0.14;AFR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.19,-5 0|0:0:-0.08,-0.79,-3.18 0|0:0:-0.02,-1.41,-5 0|0:0:-0.06,-0.91,-5 22 50707116 rs61760592 G C 100 PASS AC=12;ERATE=0.0004;LDAF=0.0058;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.9402;AVGPOST=0.9992;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.11,-5 22 50707163 rs147579992 T G 100 PASS ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0103;AA=T;AN=2184;RSQ=0.9397;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;AC=21;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0.05:-0.07,-0.84,-3.59 0|0:0:-0.01,-1.75,-5 0|0:0.35:-0.05,-0.94,-5 0|0:0:-0.11,-0.64,-4.1 22 50707282 rs185106898 C A 100 PASS 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THETA=0.0002;LDAF=0.0361;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;AC=79;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9918;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:-0,-1.95,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.23,-0.46,-1.22 0|0:0:-0.07,-0.82,-5 0|0:0:-0.02,-1.31,-5 22 50707522 rs34655450 C T 100 PASS ERATE=0.0004;LDAF=0.1228;AN=2184;AC=267;THETA=0.0005;VT=SNP;AA=c;RSQ=0.9817;SNPSOURCE=LOWCOV;AVGPOST=0.9949;AF=0.12;ASN_AF=0.12;AMR_AF=0.18;AFR_AF=0.1;EUR_AF=0.11 GT:DS:GL 0|1:1:-3.7,-0,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.06,-0.86,-5 22 50707537 rs2009788 T G 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;LDAF=0.7131;VT=SNP;AC=1560;RSQ=0.9817;SNPSOURCE=LOWCOV;AVGPOST=0.9899;AF=0.71;ASN_AF=0.68;AMR_AF=0.83;AFR_AF=0.66;EUR_AF=0.72 GT:DS:GL 0|1:1:-5,0,-5 0|1:1.15:-5,-0.95,-0.05 1|0:1:-3.66,-0,-2.5 0|1:1:-3.01,-0.48,-0.18 0|1:1:-2.44,-0,-2.28 22 50707541 rs35232755 C A 100 PASS 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AC=88;ERATE=0.0004;AA=C;AN=2184;VT=SNP;LDAF=0.042;RSQ=0.9357;SNPSOURCE=LOWCOV;THETA=0.0052;AVGPOST=0.9931;AF=0.04;ASN_AF=0.08;AMR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.01,-1.66,-5 0|0:0:-0.48,-0.48,-0.48 22 50709452 rs35562240 TTCC T 131 PASS ERATE=0.0014;LDAF=0.0127;AN=2184;AVGPOST=0.989;VT=INDEL;THETA=0.0005;AC=21;RSQ=0.6953;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-1.2,-25.2 0|0:0:0,-0.6,-10.2 0|0:0:0,0,0 0|0:0:0,-0.6,-12.4 0|0:0.1:0,-0.3,-2.8 22 50709495 rs909691 A G 100 PASS AVGPOST=0.9389;ERATE=0.0064;AN=2184;THETA=0.0005;VT=SNP;AC=1029;AA=A;SNPSOURCE=LOWCOV;RSQ=0.9094;LDAF=0.4709;AF=0.47;ASN_AF=0.49;AMR_AF=0.45;AFR_AF=0.45;EUR_AF=0.48 GT:DS:GL 0|1:1:-5,-0.06,-0.87 0|0:0.05:-0.07,-0.84,-5 0|0:0.05:-0.13,-0.6,-2.98 0|0:0:-0.01,-1.52,-5 0|0:0:-0.04,-1.09,-5 22 50709630 rs34969462 G C 100 PASS 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C CT 146 PASS RSQ=0.6343;AN=2184;VT=INDEL;ERATE=0.0017;AVGPOST=0.9724;THETA=0.0006;AC=38;LDAF=0.0278;AF=0.02;ASN_AF=0.02;AMR_AF=0.08;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-1.8,-18.4 0|0:0.05:0,0,0 0|0:0:0,-0.6,-5.9 0|0:0:0,-0.3,-2.7 0|0:0.05:0,0,0 22 50709957 rs34778589 A C 100 PASS AC=122;RSQ=0.8895;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9826;AA=A;ERATE=0.0008;LDAF=0.0592;SNPSOURCE=LOWCOV;AF=0.06;ASN_AF=0.05;AMR_AF=0.04;AFR_AF=0.05;EUR_AF=0.07 GT:DS:GL 0|1:1:-5,-0,-3.92 0|0:0.1:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50709987 rs1003969 T C 100 PASS AA=C;AC=1130;AN=2184;VT=SNP;RSQ=0.8975;AVGPOST=0.9284;LDAF=0.5251;THETA=0.0121;SNPSOURCE=LOWCOV;ERATE=0.0029;AF=0.52;ASN_AF=0.42;AMR_AF=0.67;AFR_AF=0.62;EUR_AF=0.45 GT:DS:GL 0|1:1:-5,-0,-3.47 0|1:1:-0.37,-0.44,-0.67 0|0:0.15:-0.48,-0.48,-0.48 0|1:1:-0.1,-0.7,-4.7 0|1:1:-0.19,-0.46,-2.18 22 50710349 rs2235356 G A 100 PASS 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LDAF=0.4943;AA=g;RSQ=0.9466;AN=2184;THETA=0.0005;VT=SNP;AC=1078;ERATE=0.0038;SNPSOURCE=LOWCOV;AVGPOST=0.9603;AF=0.49;ASN_AF=0.42;AMR_AF=0.63;AFR_AF=0.64;EUR_AF=0.39 GT:DS:GL 0|1:1.1:-5,-1.17,-0.03 0|1:1:-5,-0.07,-0.84 0|0:0:-0,-2.65,-5 0|1:1:-4.7,-0.04,-1.09 0|1:1:-0.48,-0.48,-0.48 22 50710810 rs3761899 T C 100 PASS RSQ=0.9136;LDAF=0.1657;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0029;AVGPOST=0.9685;THETA=0.007;AC=346;AF=0.16;ASN_AF=0.11;AMR_AF=0.19;AFR_AF=0.25;EUR_AF=0.12 GT:DS:GL 0|1:1:-1.94,-0.01,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.19,-0.46,-2.2 0|0:0:-0.06,-0.9,-5 0|0:0.15:-0.48,-0.48,-0.48 22 50710822 rs142146491 C T 100 PASS ERATE=0.0005;RSQ=0.891;LDAF=0.0095;THETA=0.0023;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=19;AVGPOST=0.9974;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.48,-0.48,-0.48 22 50710857 rs115771889 C T 100 PASS 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0|1:0.7:-0.48,-0.48,-0.48 0|0:0.45:-0.48,-0.48,-0.48 1|1:1.85:-0.48,-0.48,-0.48 0|1:1.05:-0.48,-0.48,-0.48 22 50713263 rs183912555 C T 100 PASS AA=C;AC=228;RSQ=0.4459;AN=2184;AVGPOST=0.8178;THETA=0.0008;VT=SNP;ERATE=0.0059;SNPSOURCE=LOWCOV;LDAF=0.1491;AF=0.1;ASN_AF=0.07;AMR_AF=0.08;AFR_AF=0.18;EUR_AF=0.09 GT:DS:GL 0|1:0.75:-0.1,-0.68,-4.7 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50713274 rs13057131 T C 100 PASS AA=C;AC=1150;AVGPOST=0.7966;AN=2184;ERATE=0.0054;LDAF=0.5312;VT=SNP;THETA=0.0028;RSQ=0.6898;SNPSOURCE=LOWCOV;AF=0.53;ASN_AF=0.54;AMR_AF=0.62;AFR_AF=0.5;EUR_AF=0.49 GT:DS:GL 0|1:1:-0.18,-0.48,-2.47 0|1:0.75:-0.48,-0.48,-0.48 1|0:0.65:-0.48,-0.48,-0.48 0|1:1.45:-0.48,-0.48,-0.48 0|1:1.3:-0.48,-0.48,-0.48 22 50713282 rs13053868 C T 100 PASS THETA=0.0021;AC=1108;AA=C;RSQ=0.6632;AN=2184;AVGPOST=0.778;LDAF=0.5173;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0087;AF=0.51;ASN_AF=0.49;AMR_AF=0.65;AFR_AF=0.47;EUR_AF=0.47 GT:DS:GL 0|0:0.35:-0.18,-0.48,-2.47 0|1:0.7:-0.48,-0.48,-0.48 0|0:0.5:-0.48,-0.48,-0.48 0|1:1.45:-0.48,-0.48,-0.48 0|1:1.15:-0.48,-0.48,-0.48 22 50713283 rs13053871 C T 100 PASS RSQ=0.6179;AN=2184;AC=1117;LDAF=0.5257;VT=SNP;AA=c;THETA=0.0006;ERATE=0.0121;SNPSOURCE=LOWCOV;AVGPOST=0.7559;AF=0.51;ASN_AF=0.51;AMR_AF=0.67;AFR_AF=0.47;EUR_AF=0.47 GT:DS:GL 0|1:1:-0.18,-0.48,-2.47 0|1:0.65:-0.48,-0.48,-0.48 0|0:0.6:-0.48,-0.48,-0.48 1|1:1.8:-0.48,-0.48,-0.48 0|1:1.05:-0.48,-0.48,-0.48 22 50713290 rs190232269 A T 100 PASS RSQ=0.8055;THETA=0.0035;AN=2184;VT=SNP;LDAF=0.0545;ERATE=0.0008;AVGPOST=0.9691;SNPSOURCE=LOWCOV;AA=a;AC=106;AF=0.05;AMR_AF=0.02;AFR_AF=0.19;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.09 22 50713294 rs13053877 C T 100 PASS AA=C;RSQ=0.7242;AN=2184;THETA=0.0038;LDAF=0.5412;VT=SNP;AVGPOST=0.8175;AC=1159;SNPSOURCE=LOWCOV;ERATE=0.0087;AF=0.53;ASN_AF=0.46;AMR_AF=0.67;AFR_AF=0.56;EUR_AF=0.5 GT:DS:GL 0|1:1:-5,-0.02,-1.44 0|1:1:-0.48,-0.48,-0.48 0|0:0.4:-0.48,-0.48,-0.48 1|1:1.85:-0.48,-0.48,-0.48 0|1:1.05:-3.1,-0.48,-0.17 22 50713371 rs4838869 G A 100 PASS AVGPOST=0.977;AA=G;AN=2184;RSQ=0.9641;AC=948;VT=SNP;THETA=0.0006;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.4353;AF=0.43;ASN_AF=0.38;AMR_AF=0.61;AFR_AF=0.41;EUR_AF=0.41 GT:DS:GL 0|1:1:-4.7,-0,-2.86 0|1:1:-5,-0.07,-0.83 0|0:0.3:-0.8,-0.07,-5 0|1:1:-2.95,-0.47,-0.18 0|1:1:-5,-0.01,-1.66 22 50713375 rs4838870 C T 100 PASS AA=C;AC=1058;AN=2184;LDAF=0.4856;VT=SNP;AVGPOST=0.9724;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0012;RSQ=0.9591;AF=0.48;ASN_AF=0.46;AMR_AF=0.65;AFR_AF=0.45;EUR_AF=0.45 GT:DS:GL 0|1:1:-4.4,-0,-3.4 0|1:1.05:-5,-0.07,-0.83 0|0:0.35:-0.88,-0.06,-5 0|1:1:-2.01,-0.01,-1.68 0|1:1:-5,-0.01,-1.65 22 50713387 rs114409950 G A 100 PASS THETA=0.0009;ERATE=0.0005;RSQ=0.9141;AA=G;AN=2184;AVGPOST=0.9962;LDAF=0.0201;VT=SNP;AC=41;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.52,-5 0|0:0.25:-0.01,-1.51,-5 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.02,-1.36,-5 22 50713409 rs4838815 A G 100 PASS RSQ=0.9731;AN=2184;AC=1040;THETA=0.0005;LDAF=0.4784;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9816;AF=0.48;ASN_AF=0.46;AMR_AF=0.65;AFR_AF=0.4;EUR_AF=0.46 GT:DS:GL 0|1:1:-1.95,-0,-3.7 0|1:1:-5,0,-5 0|0:0.3:-0.66,-0.11,-5 0|1:1:-2.25,-0.01,-1.68 0|1:1:-5,0,-5 22 50713422 rs113489660 C CG 363 PASS ERATE=0.0005;RSQ=0.9647;AC=145;AN=2184;AVGPOST=0.9934;VT=INDEL;THETA=0.0027;LDAF=0.0673;AF=0.07;AMR_AF=0.04;AFR_AF=0.27;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-1.2,-15.6 0|0:0:0,0,0 0|0:0:0,-0.3,-3.9 0|0:0:0,0,0 0|0:0.15:0,0,0 22 50713445 rs116092960 C A 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=C;AN=2184;AC=20;VT=SNP;LDAF=0.0094;THETA=0.0017;SNPSOURCE=LOWCOV;RSQ=0.9364;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-3.32,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-1.07,-0.04,-5 0|0:0:-0.02,-1.36,-5 22 50713450 rs185746898 T G 100 PASS ERATE=0.0004;AVGPOST=0.9983;AA=T;AN=2184;LDAF=0.0015;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.576;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.62,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.87,-5 22 50713485 rs190155453 C G 100 PASS ERATE=0.0005;AVGPOST=0.9985;AA=C;AN=2184;RSQ=0.6857;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;THETA=0.001;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.04,-1.03,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.06,-0.89,-5 22 50713496 rs73891204 C T 100 PASS AA=C;AN=2184;VT=SNP;AC=147;LDAF=0.0681;RSQ=0.9797;AVGPOST=0.9959;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AF=0.07;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.27;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.13,-0.61,-2.33 0|0:0:-0.13,-0.59,-2.89 0|0:0:-0.05,-1,-5 0|0:0:-0.03,-1.12,-5 22 50713623 rs14186 C T 100 PASS AC=12;RSQ=0.6062;AA=C;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0011;AVGPOST=0.9928;SNPSOURCE=LOWCOV;LDAF=0.0075;AF=0.01;ASN_AF=0.0035;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.11,-0.67,-2.67 0|0:0:-0.07,-0.84,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.19,-0.46,-2.98 22 50713646 rs56014721 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=G;AN=2184;RSQ=0.5142;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0016;LDAF=0.0012;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.27,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.04,-1.03,-5 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.11,-0.64,-4.7 22 50713866 rs1042979 G C 100 PASS AVGPOST=0.9963;AA=C;AN=2184;RSQ=0.8532;AC=2165;THETA=0.0005;VT=SNP;LDAF=0.9912;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.99;ASN_AF=1;AMR_AF=0.99;AFR_AF=1;EUR_AF=0.98 GT:DS:GL 1|1:2:-5,-0.96,-0.05 1|1:2:-5,-3.12,-0 0|1:1:-4.4,-0.03,-1.24 1|1:2:-5,-0.89,-0.06 1|1:2:-5,-0.92,-0.06 22 50713906 rs149919901 G A 100 PASS THETA=0.0009;AVGPOST=0.9994;AA=G;AN=2184;RSQ=0.6204;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0.06,-0.87,-5 22 50713939 rs185590865 G A 100 PASS AN=2184;VT=SNP;THETA=0.0006;AA=A;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.8719;AVGPOST=0.9992;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-3.25,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.11,-0.63,-4 22 50714211 rs190255875 A G 100 PASS THETA=0.0009;RSQ=0.9272;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;AA=A;LDAF=0.002;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50714244 . G A 100 PASS AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.6786;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50714247 . G A 100 PASS THETA=0.0015;AA=G;AN=2184;RSQ=0.7417;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50714250 rs73891205 C T 100 PASS AA=C;LDAF=0.0371;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=81;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.9984;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:-0,-2.81,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50714289 rs5771118 T C 100 PASS AVGPOST=0.9669;AC=1657;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;ERATE=0.0078;VT=SNP;THETA=0.0011;RSQ=0.936;LDAF=0.7533;AF=0.76;ASN_AF=0.67;AMR_AF=0.84;AFR_AF=0.86;EUR_AF=0.73 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-5,0,-5 0|0:0:-0,-2.4,-5 0|1:1:-5,0,-5 0|1:1:-5,0,-5 22 50714298 . C T 100 PASS AVGPOST=0.9985;LDAF=0.0021;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=4;ERATE=0.0006;RSQ=0.7059;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.86,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50714320 rs149124212 C T 100 PASS LDAF=0.0024;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0012;AC=4;ERATE=0.0003;RSQ=0.9099;AVGPOST=0.9995;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50714389 rs180698014 G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50714461 rs143473905 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.5534;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-1.95,-5 22 50714491 rs6010224 A C 100 PASS RSQ=0.9882;AA=C;THETA=0.0014;LDAF=0.538;AN=2184;VT=SNP;ERATE=0.001;AC=1178;SNPSOURCE=LOWCOV;AVGPOST=0.9925;AF=0.54;ASN_AF=0.46;AMR_AF=0.66;AFR_AF=0.67;EUR_AF=0.46 GT:DS:GL 0|1:1:-5,0,-5 0|1:0.95:-1.39,-0.02,-3.28 0|0:0:-0.13,-0.6,-2.15 0|1:1:-5,0,-5 0|1:1:-5,-0,-3.44 22 50714541 rs6010225 A G 100 PASS ERATE=0.0013;AVGPOST=0.9912;AA=G;AN=2184;VT=SNP;THETA=0.0006;AC=1178;SNPSOURCE=LOWCOV;RSQ=0.986;LDAF=0.537;AF=0.54;ASN_AF=0.46;AMR_AF=0.66;AFR_AF=0.67;EUR_AF=0.46 GT:DS:GL 0|1:1:-5,0,-5 0|1:1:-0.12,-0.62,-2.4 0|0:0:-0.12,-0.62,-3.13 0|1:1:-1.09,-0.04,-5 0|1:1:-5,0,-5 22 50714616 rs6010226 G A 100 PASS THETA=0.0009;AVGPOST=0.9409;AA=G;AN=2184;RSQ=0.9124;AC=1056;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.4798;ERATE=0.0086;AF=0.48;ASN_AF=0.37;AMR_AF=0.62;AFR_AF=0.64;EUR_AF=0.4 GT:DS:GL 0|1:1:-5,0,-5 0|1:0.85:-2.07,-0.02,-1.59 0|0:0.1:-0.15,-0.56,-1.97 0|1:1:-5,0,-5 0|1:1:-5,-0,-4.7 22 50714893 rs186044003 C A 100 PASS AVGPOST=0.9986;AA=C;AN=2184;AC=6;VT=SNP;RSQ=0.8122;LDAF=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-3.25,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.23,-0.46,-1.23 0|0:0:-0,-2.08,-5 0|0:0:-0,-3.09,-5 22 50714939 rs118175447 G A 100 PASS LDAF=0.0071;AA=g;RSQ=0.8932;AN=2184;THETA=0.0041;VT=SNP;AVGPOST=0.998;AC=14;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 22 50714964 rs76914436 C G 100 PASS LDAF=0.043;AA=C;AN=2184;AC=93;VT=SNP;ERATE=0.0008;RSQ=0.9833;SNPSOURCE=LOWCOV;AVGPOST=0.9984;THETA=0.0003;AF=0.04;ASN_AF=0.08;AMR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.22,-5 0|0:0:-0.13,-0.6,-2.2 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50715029 . T C 100 PASS AC=2148;AA=C;AN=2184;ERATE=0.0024;VT=SNP;AVGPOST=0.9909;SNPSOURCE=EXOME;RSQ=0.8138;LDAF=0.982;THETA=0.0003;AF=0.98;ASN_AF=0.99;AMR_AF=0.99;AFR_AF=1;EUR_AF=0.96 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-5,0 0|1:1:-5,0,-5 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50715127 . G A 100 PASS RSQ=0.9336;AA=G;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50715165 . C T 100 PASS RSQ=0.0498;AA=C;AN=2184;VT=SNP;LDAF=0.0001;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=0;THETA=0.001;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50715271 . T C 100 PASS LDAF=0.0013;AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;RSQ=0.8355;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50715339 . T C 100 PASS AVGPOST=1;LDAF=0.0004;THETA=0.0004;AA=T;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.7,-5 22 50715531 rs190955801 T G 100 PASS RSQ=0.4637;THETA=0.0004;AA=T;AN=2184;LDAF=0.0032;ERATE=0.0009;VT=SNP;AVGPOST=0.9956;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.64,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50715609 rs28451513 A G 100 PASS ERATE=0.0004;THETA=0.0014;AN=2184;VT=SNP;LDAF=0.0162;AA=A;AC=32;SNPSOURCE=LOWCOV;RSQ=0.9111;AVGPOST=0.996;AF=0.01;AMR_AF=0.02;AFR_AF=0.05;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.01,-1.79,-5 0|0:0:-0.04,-1.09,-5 22 50715693 rs113406645 G A 100 PASS AC=12;ERATE=0.0005;LDAF=0.0058;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.8625;AVGPOST=0.998;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.61,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50715791 rs139561039 G A 100 PASS LDAF=0.0009;AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;RSQ=0.8446;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-4.7,-5 22 50715812 rs28730370 C G 100 PASS AC=47;AA=C;AN=2184;VT=SNP;LDAF=0.0214;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9984;RSQ=0.975;AF=0.02;AMR_AF=0.02;AFR_AF=0.08;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0,-2.64,-5 0|0:0:-0,-2.57,-5 0|0:0:-0,-4.22,-5 22 50715857 rs60566030 C T 100 PASS ERATE=0.0004;AN=2184;THETA=0.0005;VT=SNP;AA=c;AC=15;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.941;LDAF=0.0075;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.08,-0.8,-3.21 0|0:0:-0,-3.34,-5 0|0:0:-0,-3.36,-5 22 50715888 rs75930249 G A 100 PASS THETA=0.0004;RSQ=0.8889;AA=G;AN=2184;VT=SNP;AVGPOST=0.998;AC=14;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0069;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0.05:-1.17,-0.03,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.8,-5 22 50715970 rs146745870 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0054;VT=SNP;RSQ=0.9396;AC=11;ERATE=0.0003;AVGPOST=0.9992;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.85,-4.4 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50715973 rs28637964 G T 100 PASS ERATE=0.0004;THETA=0.0004;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.4524;VT=SNP;AVGPOST=0.9976;AC=988;AF=0.45;ASN_AF=0.54;AMR_AF=0.34;AFR_AF=0.3;EUR_AF=0.54 GT:DS:GL 1|0:1:-5,0,-5 1|0:1:-1.69,-0.02,-1.53 1|1:2:-5,-0.92,-0.06 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50716010 rs139527301 C T 100 PASS THETA=0.0009;AVGPOST=0.9985;AA=C;LDAF=0.0071;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9203;VT=SNP;AC=14;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2,-5 0|0:0:-0.7,-0.1,-4.4 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716044 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0011;LDAF=0;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716068 rs11547732 C T 100 PASS LDAF=0.0739;AA=C;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=161;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AF=0.07;AMR_AF=0.04;AFR_AF=0.3;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.21,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716167 rs1127000 G A 100 PASS ERATE=0.0004;AVGPOST=0.9977;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=1103;LDAF=0.5053;THETA=0.0005;VT=SNP;RSQ=0.9964;AF=0.51;ASN_AF=0.61;AMR_AF=0.46;AFR_AF=0.31;EUR_AF=0.58 GT:DS:GL 1|0:1:-5,0,-5 1|0:1:-5,0,-5 1|1:2:-5,-5,0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50716302 rs144178635 G A 100 PASS RSQ=0.8928;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.002;AC=4;ERATE=0.0003;AVGPOST=0.9995;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716375 rs187332808 G A 100 PASS AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.17,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716479 . G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AVGPOST=0.9988;LDAF=0.0012;AC=2;THETA=0.0003;RSQ=0.5431;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.22,-0.46,-1.27 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716480 rs117265627 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.998;AC=32;LDAF=0.0157;RSQ=0.9407;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0.05:-0.22,-0.46,-1.27 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716490 . G T 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9969;SNPSOURCE=EXOME;AC=5;LDAF=0.003;ERATE=0.0006;RSQ=0.6054;THETA=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.62,-2.38 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50716492 rs190353943 G A 100 PASS LDAF=0.0067;AVGPOST=0.9994;THETA=0.0004;RSQ=0.9597;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=14;ERATE=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.22,-0.46,-1.31 0|0:0:-0.13,-0.61,-2.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716538 . G T 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8098;THETA=0.0006;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716606 . T C 100 PASS AA=T;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50716816 rs76904825 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;AC=0;SNPSOURCE=LOWCOV;LDAF=0.0002;RSQ=0.0607;AF=0 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0,-4,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-2.54,-5 22 50717015 rs145193730 A G 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0064;AA=A;AC=14;RSQ=0.9652;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.15,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-4.4,-5 22 50717060 rs182970183 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8586;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.49,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.77,-5 22 50717103 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.73,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 22 50717129 rs28718510 T G 100 PASS ERATE=0.0004;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=1121;VT=SNP;LDAF=0.5133;AVGPOST=0.9988;RSQ=0.998;AF=0.51;ASN_AF=0.61;AMR_AF=0.46;AFR_AF=0.35;EUR_AF=0.58 GT:DS:GL 1|0:1:-5,0,-5 1|0:1:-5,-0,-3.92 1|1:2:-5,-2.95,-0 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50717263 . C T 100 PASS LDAF=0.0009;AA=C;AN=2184;RSQ=0.6371;AVGPOST=0.999;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.22,-5 22 50717291 rs186846228 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;ERATE=0.0006;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0,-3.44,-5 0|0:0:-0.02,-1.44,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50717405 . G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.8603;AVGPOST=0.9997;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0011;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50717476 rs28622189 C A 100 PASS AA=C;THETA=0.0004;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.059;VT=SNP;AC=129;ERATE=0.0003;AVGPOST=0.9995;AF=0.06;AMR_AF=0.03;AFR_AF=0.24;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50717547 rs28633213 T C 100 PASS RSQ=0.9902;AA=C;AC=1070;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9941;LDAF=0.4899;AF=0.49;ASN_AF=0.39;AMR_AF=0.47;AFR_AF=0.57;EUR_AF=0.52 GT:DS:GL 1|0:1:-5,0,-5 1|0:1:-0.04,-1.01,-4.4 1|1:2:-5,-0.7,-0.1 0|0:0:-0.01,-1.47,-5 1|0:1:-5,0,-5 22 50717663 . G GAACC 464 PASS ERATE=0.0004;AN=2184;AC=37;RSQ=0.888;VT=INDEL;LDAF=0.0177;AVGPOST=0.9951;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-2.1,-39.1 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50717752 rs191729225 C T 100 PASS ERATE=0.0004;LDAF=0.0033;AA=C;THETA=0.0004;AN=2184;RSQ=0.7275;AVGPOST=0.9979;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;ASN_AF=0.0035;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.03,-1.13,-5 22 50717787 rs76461841 C A 100 PASS ERATE=0.0005;AC=30;AA=C;AN=2184;VT=SNP;LDAF=0.0147;AVGPOST=0.9964;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9029;AF=0.01;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-4.7,-5 0|1:0.9:-1.94,-0.02,-1.39 0|0:0:-0.14,-0.57,-1.99 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.61,-5 22 50717833 rs28418659 C T 100 PASS ERATE=0.0013;AA=C;THETA=0.0004;AN=2184;AC=934;LDAF=0.4278;VT=SNP;RSQ=0.9887;SNPSOURCE=LOWCOV;AVGPOST=0.9937;AF=0.43;ASN_AF=0.38;AMR_AF=0.43;AFR_AF=0.34;EUR_AF=0.52 GT:DS:GL 1|0:1:-5,0,-5 1|0:1:-1.83,-0.01,-2.37 1|1:1.95:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.59,-5 1|0:1:-5,-0,-2.05 22 50717956 rs183199836 T C 100 PASS ERATE=0.0005;AVGPOST=0.9966;AA=T;AN=2184;VT=SNP;RSQ=0.8088;AC=15;SNPSOURCE=LOWCOV;LDAF=0.0076;THETA=0.0003;AF=0.01;ASN_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.24,-0.45,-1.13 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50717984 rs73891207 C A 100 PASS AA=C;LDAF=0.0374;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9928;AVGPOST=0.9993;AC=81;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.09,-5 0|0:0:-0.03,-1.2,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50718101 . G A 100 PASS AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.6867;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50718104 rs149176335 G T 100 PASS RSQ=0.7635;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50718217 . C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0001;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.0499;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50718290 rs112116434 C A 100 PASS LDAF=0.0009;AA=C;AN=2184;RSQ=0.7691;VT=SNP;THETA=0.0018;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0.05:-0.04,-1.07,-4.7 0|0:0:-0.14,-0.58,-2.04 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50718397 rs28611220 A G 100 PASS ERATE=0.0229;RSQ=0.9431;THETA=0.0004;LDAF=0.5772;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9644;AC=1267;AF=0.58;ASN_AF=0.65;AMR_AF=0.51;AFR_AF=0.54;EUR_AF=0.59 GT:DS:GL 1|0:1:-5,0,-5 1|0:0.6:-0.06,-0.91,-5 1|1:2:-5,-0.99,-0.05 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50718517 rs151308310 G A 100 PASS AA=g;THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.8558;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50718757 rs78659355 T C 100 PASS ERATE=0.0005;AC=94;AN=2184;VT=SNP;AA=c;RSQ=0.9686;LDAF=0.0434;SNPSOURCE=LOWCOV;AVGPOST=0.9968;THETA=0.002;AF=0.04;ASN_AF=0.08;AMR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0.2,-0.48,-1.46 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.06,-0.89,-5 0|0:0:-0.06,-0.91,-5 22 50718793 rs147117578 C G 100 PASS ERATE=0.0004;AVGPOST=0.99;AN=2184;VT=SNP;RSQ=0.8398;AA=c;LDAF=0.0229;SNPSOURCE=LOWCOV;AC=50;THETA=0.0003;AF=0.02;ASN_AF=0.0017;AMR_AF=0.03;AFR_AF=0.0041;EUR_AF=0.05 GT:DS:GL 0|0:0:-0,-3.44,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.06,-0.91,-5 22 50718873 rs115482689 G A 100 PASS ERATE=0.0004;LDAF=0.0368;RSQ=0.9914;THETA=0.0002;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=80;VT=SNP;AVGPOST=0.9993;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:-0,-2.24,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:-0,-3.36,-5 22 50718893 rs187855623 C T 100 PASS ERATE=0.0005;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.4979;VT=SNP;AA=c;LDAF=0.0011;AC=1;AVGPOST=0.9987;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50718894 . G A 100 PASS ERATE=0.0005;AN=2184;VT=SNP;AVGPOST=0.9991;RSQ=0.6451;SNPSOURCE=EXOME;LDAF=0.0011;THETA=0.0007;AA=N;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50718941 rs73891209 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=80;VT=SNP;LDAF=0.0366;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;RSQ=0.9984;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50719040 . C A 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.7109;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;THETA=0.0007;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50719046 . G A 100 PASS RSQ=0.0498;AA=G;AN=2184;VT=SNP;LDAF=0.0001;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=0;THETA=0.0007;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50719062 . G A 100 PASS LDAF=0.0009;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.5392;SNPSOURCE=EXOME;AC=1;ERATE=0.0006;AVGPOST=0.9992;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50719113 . C T 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0019;RSQ=0.6438;SNPSOURCE=EXOME;AC=3;AVGPOST=0.9982;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.3,-5 0|0:0:-0,-3.74,-5 0|0:0.05:-0,-2.14,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.24,-5 22 50719155 . G A 100 PASS AA=G;AN=2184;RSQ=0.6105;AC=6;THETA=0.0008;VT=SNP;ERATE=0.0008;SNPSOURCE=EXOME;LDAF=0.0048;AVGPOST=0.9951;AF=0.0027;ASN_AF=0.0017;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0.05:-0,-2,-5 0|0:0:-0.14,-0.57,-2.02 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.92,-5 22 50719161 . C T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;RSQ=0.1254;AVGPOST=0.999;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=0;LDAF=0.0005;AF=0 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.11,-0.66,-2.5 0|0:0:-0,-2.53,-5 0|0:0:-0.01,-1.62,-5 22 50719165 rs28540713 T C 100 PASS AA=C;LDAF=0.548;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9729;THETA=0.0005;ERATE=0.0032;VT=SNP;AVGPOST=0.9831;AC=1195;AF=0.55;ASN_AF=0.47;AMR_AF=0.5;AFR_AF=0.64;EUR_AF=0.57 GT:DS:GL 1|0:1:-4.7,-0,-5 1|0:1:-5,-0,-4 1|1:2:-4.7,-0.34,-0.27 1|0:1:-5,0,-5 1|0:1:-4.7,-0,-5 22 50719166 . G A 100 PASS ERATE=0.0004;THETA=0.0004;RSQ=0.3827;AA=G;AN=2184;LDAF=0.0018;VT=SNP;SNPSOURCE=EXOME;AVGPOST=0.9973;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0.04,-1.01,-4.22 0|0:0:-0,-2.81,-5 0|0:0:-0.01,-1.52,-5 22 50719237 . G A 100 PASS ERATE=0.0004;LDAF=0.0016;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.8639;AVGPOST=0.9995;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.68,-5 0|0:0:-0.02,-1.3,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.08,-5 22 50719251 rs11547734 A G 100 PASS AC=1306;LDAF=0.5982;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9857;VT=SNP;THETA=0.0011;ERATE=0.001;AVGPOST=0.9915;AF=0.6;ASN_AF=0.61;AMR_AF=0.51;AFR_AF=0.66;EUR_AF=0.59 GT:DS:GL 1|0:1:-5,0,-5 1|0:1:-0.02,-1.4,-5 1|1:2:-5,-1.02,-0.04 1|0:1:-5,0,-5 1|0:1:-5,0,-5 22 50719293 rs138514376 G A 100 PASS ERATE=0.0005;RSQ=0.6343;THETA=0.0032;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.03,-5 22 50719317 . G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.638;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 22 50719356 . G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50719443 rs142698988 G A 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.9508;LDAF=0.0064;AC=14;THETA=0.0007;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 22 50719484 . G A 100 PASS THETA=0.0014;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.22,-5 0|0:0:-0.01,-1.52,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50719632 rs192431671 C A 100 PASS ERATE=0.0004;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.5465;VT=SNP;AVGPOST=0.9991;AC=1;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.1,-5 22 50719643 . G C 100 PASS RSQ=0.6505;THETA=0.0004;AA=G;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9989;SNPSOURCE=EXOME;ERATE=0.0006;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.11,-0.65,-2.58 0|0:0.05:-0.22,-0.46,-1.27 0|0:0:-0,-3.66,-5 0|0:0:-0,-3.55,-5 22 50719652 rs185630451 G A 100 PASS THETA=0.0015;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.009;VT=SNP;RSQ=0.9578;ERATE=0.0003;AC=19;AVGPOST=0.9992;AF=0.01;AMR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-3.38,-5 0|0:0:-0,-3.47,-5 22 50719774 . G A 100 PASS AA=G;AN=2184;RSQ=0.7199;AVGPOST=0.999;LDAF=0.0015;VT=SNP;SNPSOURCE=EXOME;THETA=0.0007;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.0035;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.97,-5 0|0:0:-1.38,-0.02,-2.73 0|0:0:0,-5,-5 0|0:0:-0,-2.29,-5 22 50719814 rs150309152 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;RSQ=0.7534;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.21,-5 22 50719842 rs137895110 C T 100 PASS ERATE=0.0004;RSQ=0.6;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9987;LDAF=0.0012;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.66,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.52,-5 22 50719843 rs190470503 G A 100 PASS AA=G;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;RSQ=0.5873;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 22 50719860 rs80199648 C T 100 PASS AC=62;ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0287;RSQ=0.973;AVGPOST=0.9982;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.15,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.44,-5 22 50719869 . G A 100 PASS RSQ=0.6009;THETA=0.0035;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=5;AVGPOST=0.997;ERATE=0.0007;LDAF=0.0031;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.36,-5 22 50719942 . C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.7001;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=EXOME;THETA=0.0049;AVGPOST=0.9984;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.06,-0.88,-3.8 0|0:0:-0.07,-0.81,-4.1 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50719976 rs111925803 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9627;LDAF=0.1447;VT=SNP;THETA=0.0028;AC=313;ERATE=0.0008;AVGPOST=0.9865;AF=0.14;ASN_AF=0.07;AMR_AF=0.17;AFR_AF=0.02;EUR_AF=0.26 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.05,-0.99,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720181 rs28442189 C G 100 PASS AC=793;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.363;ERATE=0.0024;VT=SNP;AVGPOST=0.9915;RSQ=0.985;AF=0.36;ASN_AF=0.31;AMR_AF=0.3;AFR_AF=0.35;EUR_AF=0.44 GT:DS:GL 1|0:1:-5,0,-5 1|0:1:-5,-0,-2.6 1|1:2:-5,-2.96,-0 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50720191 rs149492800 C T 100 PASS ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0105;VT=SNP;THETA=0.0018;AVGPOST=0.997;AC=21;RSQ=0.8814;AF=0.01;ASN_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.53,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50720215 . G A 100 PASS AA=G;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;RSQ=0.9282;THETA=0.0003;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-1.97,-5 0|0:0:-0,-2.85,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 22 50720264 rs143935470 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0031;LDAF=0.0015;VT=SNP;RSQ=0.6611;AVGPOST=0.9988;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.03,-1.21,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720295 rs116468936 G A 100 PASS ERATE=0.0005;THETA=0.0002;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=26;VT=SNP;LDAF=0.0122;AVGPOST=0.9995;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.32,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720319 rs79484015 G A 100 PASS THETA=0.0002;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.018;ERATE=0.0003;AC=39;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720361 rs191961835 G A 100 PASS ERATE=0.0005;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0007;AC=1;RSQ=0.6933;AVGPOST=0.9995;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720408 rs139926938 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.004;AC=8;RSQ=0.9292;VT=SNP;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720418 . C T 100 PASS THETA=0.0009;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;RSQ=0.7318;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720430 rs56110807 G C 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=154;AVGPOST=0.9996;VT=SNP;ERATE=0.0003;RSQ=0.998;LDAF=0.0706;AF=0.07;AMR_AF=0.03;AFR_AF=0.29 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720580 rs141701432 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.6944;THETA=0.0005;VT=SNP;ERATE=0.0003;LDAF=0.0012;AC=2;AVGPOST=0.9992;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.06,-0.87,-3.74 0|0:0.05:-0.13,-0.59,-2.14 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50720591 . C G 100 PASS ERATE=0.0004;RSQ=0.9306;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;LDAF=0.0025;AC=4;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.1,-0.7,-2.88 0|0:0:-0.13,-0.59,-2.11 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50720622 rs11547728 C T 100 PASS ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.377;AVGPOST=0.9879;AC=819;THETA=0.0012;RSQ=0.9804;AF=0.38;ASN_AF=0.31;AMR_AF=0.31;AFR_AF=0.33;EUR_AF=0.48 GT:DS:GL 1|0:1:-5,0,-5 1|0:1.1:-5,-1,-0.05 1|1:2:-5,-0.74,-0.09 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50720802 rs80056853 C A 100 PASS ERATE=0.0005;AA=C;AN=2184;RSQ=0.9549;AVGPOST=0.9952;VT=SNP;THETA=0.0006;LDAF=0.0424;SNPSOURCE=LOWCOV;AC=91;AF=0.04;ASN_AF=0.08;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 22 50720874 rs184568395 A C 100 PASS ERATE=0.0004;AN=2184;RSQ=0.821;VT=SNP;AA=A;LDAF=0.0101;SNPSOURCE=LOWCOV;AC=21;AVGPOST=0.9951;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.95,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.25,-0.45,-1.12 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-3.55,-5 22 50720903 rs142679259 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0074;AC=15;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.8867;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.16,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.01,-1.66,-5 0|0:0:-0,-2.12,-5 22 50720904 rs35278490 G C 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;RSQ=0.9644;VT=SNP;LDAF=0.0888;SNPSOURCE=LOWCOV;AC=192;AVGPOST=0.9925;AF=0.09;ASN_AF=0.22;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.06 GT:DS:GL 0|0:0:-0,-2.11,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.61,-2.21 1|0:1:-5,-0,-2.95 0|0:0:-0,-2.43,-5 22 50720909 rs116583531 T A 100 PASS AA=T;AN=2184;VT=SNP;AVGPOST=0.9989;RSQ=0.9553;SNPSOURCE=LOWCOV;LDAF=0.0089;THETA=0.0007;ERATE=0.0003;AC=19;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.49,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.6,-2.18 0|0:0:-0.04,-1.1,-5 0|0:0:-0,-1.97,-5 22 50720914 rs189230942 C T 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=c;AVGPOST=0.9971;AC=9;SNPSOURCE=LOWCOV;THETA=0.0016;RSQ=0.7413;LDAF=0.0045;AF=0.0041;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-2.52,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.03,-1.12,-5 0|0:0:-0.01,-1.52,-5 22 50721000 rs112225081 A G 100 PASS RSQ=0.9432;AA=G;AN=2184;AC=13;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.002;ERATE=0.0003;LDAF=0.006;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.17,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.04,-1.02,-4.22 0|0:0:-0.32,-0.28,-5 0|0:0:-0.01,-1.72,-5 22 50721003 rs28404597 G A 100 PASS RSQ=0.9514;LDAF=0.213;ERATE=0.0014;THETA=0.0032;AA=G;AN=2184;VT=SNP;AC=465;SNPSOURCE=LOWCOV;AVGPOST=0.978;AF=0.21;ASN_AF=0.17;AMR_AF=0.24;AFR_AF=0.22;EUR_AF=0.22 GT:DS:GL 1|0:1:-5,0,-5 1|0:1.1:-5,-1.23,-0.03 1|1:2:-5,-0.48,-0.18 0|0:0:-0,-2.87,-5 0|0:0:-0.01,-1.73,-5 22 50721054 rs186471538 C T 100 PASS AVGPOST=0.9986;AA=C;AN=2184;VT=SNP;THETA=0.0055;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;RSQ=0.6926;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.44,-5 0|0:0:-0,-2.95,-5 0|0:0:-0.05,-0.98,-4.1 0|0:0:-0,-2.76,-5 0|0:0:-0.02,-1.41,-5 22 50721118 rs56335823 G C 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=84;VT=SNP;RSQ=0.9938;LDAF=0.0386;THETA=0.0016;ERATE=0.0003;AVGPOST=0.9995;AF=0.04;AMR_AF=0.02;AFR_AF=0.15 GT:DS:GL 0|0:0:-0,-3.3,-5 0|0:0:-0,-2.94,-5 0|0:0:-0,-2.38,-5 0|0:0:-0,-2.69,-5 0|0:0:-0.01,-1.48,-5 22 50721123 . G GCA 177 PASS AVGPOST=0.9682;LDAF=0.0346;ERATE=0.0023;RSQ=0.6505;AN=2184;VT=INDEL;THETA=0.0008;AC=63;AF=0.03;ASN_AF=0.05;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-1.5,-23.7 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50721170 . C T 100 PASS LDAF=0.0013;AA=C;THETA=0.0061;AN=2184;AVGPOST=0.999;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;RSQ=0.7068;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.25,-5 22 50721177 . C T 100 PASS THETA=0.0021;LDAF=0.0024;AA=C;AN=2184;RSQ=0.6444;AVGPOST=0.9979;VT=SNP;ERATE=0.0008;SNPSOURCE=EXOME;AC=4;AF=0.0018;ASN_AF=0.0035;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.76,-5 22 50721187 rs189387400 G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.59,-5 22 50721188 rs79500228 C T 100 PASS ERATE=0.0005;AA=C;RSQ=0.7399;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0012;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.54,-5 22 50721207 . C T 100 PASS THETA=0.0048;AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.7,-5 22 50721244 . C T 100 PASS ERATE=0.0014;AA=C;AN=2184;RSQ=0.6105;AVGPOST=0.9981;VT=SNP;LDAF=0.0022;SNPSOURCE=EXOME;THETA=0.0007;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.42,-0.21,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 22 50721252 . T C 100 PASS ERATE=0.0004;AA=T;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.8357;SNPSOURCE=EXOME;AC=5;LDAF=0.0025;THETA=0.0062;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.38,-5 22 50721295 . C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.6557;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;THETA=0.0016;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.79,-5 0|0:0:-0,-2.95,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 22 50721296 rs149805063 G A 100 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9986;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0057;VT=SNP;RSQ=0.9013;AC=11;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.04,-5 0|0:0:-0,-3.38,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 22 50721412 rs180908061 A C 100 PASS LDAF=0.0021;RSQ=0.5438;AN=2184;VT=SNP;AA=A;AVGPOST=0.9973;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.92,-5 0|0:0:-0,-2.4,-5 0|0:0:-0,-3.66,-5 0|0:0:-0,-3.74,-5 22 50721492 rs62621372 C T 100 PASS AA=C;AC=73;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9638;THETA=0.0008;AVGPOST=0.9967;VT=SNP;LDAF=0.0339;ERATE=0.0003;AF=0.03;ASN_AF=0.07;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.9,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.3,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-3.92,-5 22 50721495 rs141762500 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;AC=0;SNPSOURCE=LOWCOV;RSQ=0.0971;THETA=0.0034;LDAF=0.0005;AF=0 GT:DS:GL 0|0:0:-0,-3.08,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-2.06,-5 0|0:0:-0,-3.38,-5 0|0:0:-0,-3.66,-5 22 50721497 . T C 100 PASS RSQ=0.9059;AA=T;AN=2184;LDAF=0.004;AC=8;VT=SNP;THETA=0.0045;AVGPOST=0.9991;SNPSOURCE=EXOME;ERATE=0.0003;AF=0.0037;AMR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.24,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-2.68,-5 0|0:0:-0,-3.21,-5 0|0:0:-0,-3.47,-5 22 50721723 rs187268347 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;LDAF=0.0019;RSQ=0.8127;ERATE=0.0003;AC=3;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.14,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.08,-0.79,-4 0|0:0:0,-5,-5 0|0:0:-0,-3.55,-5 22 50721732 . C T 100 PASS AA=C;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.1825;THETA=0.0059;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;LDAF=0.0005;AF=0 GT:DS:GL 0|0:0:-0,-2.69,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.02,-1.42,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 22 50721756 rs28497828 G A 100 PASS THETA=0.0039;ERATE=0.0077;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;LDAF=0.0968;AC=202;RSQ=0.948;AVGPOST=0.9881;AF=0.09;ASN_AF=0.08;AMR_AF=0.06;AFR_AF=0.22;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.44,-5 0|0:0:-0,-4.4,-5 0|1:1:-5,0,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50721758 . G A 100 PASS ERATE=0.0004;THETA=0.0032;AA=G;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=EXOME;AC=4;AVGPOST=0.9995;RSQ=0.8662;AF=0.0018;ASN_AF=0.0035;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50721835 rs190910795 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;THETA=0.0008;LDAF=0.0015;VT=SNP;ERATE=0.0003;RSQ=0.9225;AC=3;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50721879 rs116229426 C T 100 PASS ERATE=0.0013;AA=C;THETA=0.0061;AVGPOST=0.9966;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=13;VT=SNP;RSQ=0.7992;LDAF=0.0069;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50722007 . C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;THETA=0.0049;AC=1;RSQ=0.6624;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.71,-5 0|0:0:-0,-3.06,-5 0|0:0:-0,-3.85,-5 22 50722021 . G A 100 PASS AVGPOST=0.9994;AA=G;AN=2184;RSQ=0.7206;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;THETA=0.0064;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4,-5 0|0:0:-0,-4.22,-5 22 50722049 . C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;THETA=0.0077;RSQ=0.6307;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 22 50722131 . G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.5995;THETA=0.0037;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.73,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50722134 rs11547731 T C 100 PASS AC=1382;THETA=0.0014;ERATE=0.0462;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;AVGPOST=0.9197;LDAF=0.6282;RSQ=0.8761;AF=0.63;ASN_AF=0.53;AMR_AF=0.59;AFR_AF=0.76;EUR_AF=0.64 GT:DS:GL 0|1:1:-5,0,-5 1|1:2:-5,-5,0 1|1:2:-5,-4.22,-0 0|1:1:-5,0,-5 1|1:2:-5,-5,0 22 50722167 rs28470336 T C 100 PASS LDAF=0.0273;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;RSQ=0.8151;VT=SNP;ERATE=0.0038;AC=53;THETA=0.001;AVGPOST=0.9867;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 0|0:0:-0,-2.53,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50722227 . G A 100 PASS AA=G;AN=2184;THETA=0.0105;RSQ=0.8184;VT=SNP;LDAF=0.0019;AVGPOST=0.9989;SNPSOURCE=EXOME;AC=4;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.73,-5 0|0:0:-0,-2.97,-5 0|0:0:-0.03,-1.11,-4.7 0|0:0:0,-5,-5 0|0:0:-0,-2.97,-5 22 50722233 rs145506041 A G 100 PASS ERATE=0.0004;AN=2184;THETA=0.0031;RSQ=0.7292;VT=SNP;AA=A;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9982;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.6,-5 0|0:0:-0,-2.51,-5 0|0:0:-0.02,-1.45,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.15,-5 22 50722277 rs77569471 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=45;RSQ=0.8768;LDAF=0.0239;VT=SNP;THETA=0.0095;ERATE=0.003;AVGPOST=0.992;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-3.74,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.03,-5 22 50722289 . G A 100 PASS ERATE=0.0004;RSQ=0.8284;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0006;SNPSOURCE=EXOME;AC=3;LDAF=0.0017;AF=0.0014;ASN_AF=0.0035;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-3.34,-5 22 50722408 rs79966207 T C 100 PASS AC=199;LDAF=0.1035;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.008;AVGPOST=0.9604;ERATE=0.0055;RSQ=0.844;AA=t;AF=0.09;ASN_AF=0.07;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.17 GT:DS:GL 0|1:0.95:-0.78,-0.08,-2.31 0|1:1:-5,-0.01,-1.64 0|0:0.05:-0.23,-0.38,-5 0|0:0:-0.09,-0.73,-5 0|0:0.45:-0.06,-0.9,-5 22 50722424 . G A 100 PASS AA=g;AN=2184;THETA=0.004;LDAF=0.0054;RSQ=0.7752;VT=SNP;AC=10;AVGPOST=0.9969;SNPSOURCE=EXOME;ERATE=0.0003;AF=0.0046;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.67,-5 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.09,-0.72,-5 22 50722468 rs114307199 G A 100 PASS AA=g;RSQ=0.7821;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=46;VT=SNP;THETA=0.0011;LDAF=0.0254;ERATE=0.0012;AVGPOST=0.9847;AF=0.02;AMR_AF=0.01;AFR_AF=0.08;EUR_AF=0.004 GT:DS:GL 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-4.22 0|0:0:-0.06,-0.89,-5 22 50722534 . G A 100 PASS THETA=0.0015;AA=g;AVGPOST=0.9946;LDAF=0.0047;AN=2184;RSQ=0.5245;VT=SNP;ERATE=0.0008;SNPSOURCE=EXOME;AC=5;AF=0.0023;ASN_AF=0.0035;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-4.7,-5 0|0:0:-0.02,-1.33,-5 22 50722646 . G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=g;AN=2184;VT=SNP;RSQ=0.7948;THETA=0.003;SNPSOURCE=EXOME;LDAF=0.0012;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50722691 . C T 100 PASS AVGPOST=0.9994;AN=2184;RSQ=0.7789;VT=SNP;AA=c;SNPSOURCE=EXOME;THETA=0.0007;ERATE=0.0003;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.08,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.03,-1.22,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50722746 rs79526162 C A 100 PASS ERATE=0.0005;AN=2184;AVGPOST=0.9979;VT=SNP;AC=22;AA=c;RSQ=0.9183;LDAF=0.0107;THETA=0.0053;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.17,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.25 0|0:0:0,-5,-5 0|0:0:-0,-2.33,-5 22 50722777 rs73437452 G A 100 PASS ERATE=0.0005;AC=35;AA=g;AN=2184;RSQ=0.9045;VT=SNP;THETA=0.0067;SNPSOURCE=LOWCOV;AVGPOST=0.9955;LDAF=0.0179;AF=0.02;AFR_AF=0.07 GT:DS:GL 0|0:0:-0,-3.38,-5 0|0:0:-0.19,-0.45,-2.13 0|0:0:-0.07,-0.8,-4.1 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.53,-5 22 50722911 rs28504007 T A 100 PASS ERATE=0.0013;AA=T;AN=2184;RSQ=0.9638;AVGPOST=0.9853;VT=SNP;THETA=0.0046;LDAF=0.142;SNPSOURCE=LOWCOV;AC=312;AF=0.14;ASN_AF=0.05;AMR_AF=0.06;AFR_AF=0.48;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.81,-3.3 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-2,-5 22 50722939 . A AC 290 PASS THETA=0.0039;AN=2184;AC=434;VT=INDEL;ERATE=0.0089;RSQ=0.717;AVGPOST=0.8671;LDAF=0.2258;AF=0.2;ASN_AF=0.37;AMR_AF=0.22;AFR_AF=0.1;EUR_AF=0.12 GT:DS:GL 0|0:0.25:0,0,0 0|0:0.4:0,0,0 0|0:0:0,0,0 1|0:0.8:0,0,0 0|0:0.05:0,0,0 22 50723013 . G A 100 PASS AVGPOST=0.9994;AA=G;AN=2184;LDAF=0.0018;VT=SNP;THETA=0.0011;RSQ=0.8546;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.3,-5 0|0:0:-0.02,-1.43,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50723068 . G C 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.8138;THETA=0.0051;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50723282 rs73437453 G C 100 PASS RSQ=0.98;THETA=0.0054;AA=G;AN=2184;VT=SNP;AC=34;LDAF=0.0153;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.02;AFR_AF=0.07 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0,-2.52,-5 0|0:0:-0,-2.44,-5 0|0:0:-0.01,-1.59,-5 0|0:0:0,-5,-5 22 50723411 rs111638781 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9944;RSQ=0.8345;VT=SNP;THETA=0.0037;LDAF=0.0126;SNPSOURCE=LOWCOV;AC=25;AF=0.01;AMR_AF=0.03;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.49,-5 0|1:0.65:-0.99,-0.05,-4.22 0|0:0:-0.01,-1.65,-5 0|0:0:-0,-2.85,-5 22 50723474 rs4076566 G A 100 PASS AC=641;AA=G;AN=2184;THETA=0.0008;RSQ=0.9699;VT=SNP;LDAF=0.2949;SNPSOURCE=LOWCOV;AVGPOST=0.9816;ERATE=0.0007;AF=0.29;ASN_AF=0.23;AMR_AF=0.4;AFR_AF=0.14;EUR_AF=0.39 GT:DS:GL 0|1:1:-1.62,-0.01,-5 1|0:1:-5,0,-5 1|1:2:-5,-1.92,-0.01 0|1:1:-1.23,-0.03,-5 1|1:1.9:-5,-0.93,-0.05 22 50723501 rs4075185 G C 100 PASS ERATE=0.0004;RSQ=0.9886;AA=G;AN=2184;AC=411;VT=SNP;THETA=0.0011;AVGPOST=0.9956;LDAF=0.1892;SNPSOURCE=LOWCOV;AF=0.19;ASN_AF=0.27;AMR_AF=0.14;AFR_AF=0.02;EUR_AF=0.26 GT:DS:GL 0|0:0:-0.09,-0.71,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0.02,-1.47,-5 1|0:1:-5,-0,-2.46 0|0:0:-0.11,-0.67,-5 22 50723506 rs142665281 A G 100 PASS LDAF=0.0013;AN=2184;VT=SNP;THETA=0.0011;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.6579;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.87,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.1,-0.67,-5 22 50723543 rs182751953 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.4559;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.19,-0.46,-2.35 0|0:0:-0.03,-1.12,-5 22 50723568 rs34407639 T C 100 PASS RSQ=0.9858;AC=422;THETA=0.0004;AVGPOST=0.9946;AA=T;AN=2184;VT=SNP;LDAF=0.1939;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.19;ASN_AF=0.27;AMR_AF=0.14;AFR_AF=0.02;EUR_AF=0.27 GT:DS:GL 0|0:0:-0.08,-0.78,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.12,-0.62,-3.17 1|0:0.95:-0.18,-0.46,-2.43 0|0:0:-0.03,-1.13,-5 22 50723590 rs185841147 G T 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.998;LDAF=0.0023;RSQ=0.6553;SNPSOURCE=LOWCOV;THETA=0.0016;AC=3;ERATE=0.0007;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.12,-0.61,-3.09 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0.1,-0.67,-5 22 50723608 rs28564290 G A 100 PASS AA=G;AN=2184;VT=SNP;AC=423;ERATE=0.0017;AVGPOST=0.9836;LDAF=0.1964;RSQ=0.9606;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.19;ASN_AF=0.27;AMR_AF=0.14;AFR_AF=0.03;EUR_AF=0.27 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.09,-0.75,-3.8 1|0:0.95:-0.11,-0.65,-4.4 0|0:0:-0.12,-0.63,-5 22 50723631 rs147988804 A G 100 PASS THETA=0.0009;AC=73;AA=G;AN=2184;VT=SNP;ERATE=0.0026;SNPSOURCE=LOWCOV;AVGPOST=0.9661;LDAF=0.0448;RSQ=0.6914;AF=0.03;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.05 GT:DS:GL 0|0:0.05:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.14,-0.57,-2.02 0|0:0:-0.19,-0.46,-2.4 0|0:0.05:-0.11,-0.66,-5 22 50723863 rs76142425 G T 100 PASS AC=774;LDAF=0.4135;RSQ=0.4688;AA=T;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.7339;ERATE=0.0756;SNPSOURCE=LOWCOV;AF=0.35;ASN_AF=0.3;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.36 GT:DS:GL 0|0:0.15:-0.11,-0.65,-4.22 1|0:1.05:-3.92,-0.14,-0.57 1|0:1:-1.66,-0.03,-1.31 1|0:1:-0.48,-0.48,-0.48 0|0:0.6:-0.48,-0.48,-0.48 22 50724190 rs28604596 G T 100 PASS AC=1386;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.021;LDAF=0.6236;RSQ=0.8881;AVGPOST=0.933;AA=t;AF=0.63;ASN_AF=0.52;AMR_AF=0.59;AFR_AF=0.73;EUR_AF=0.68 GT:DS:GL 0|1:1:-3.17,-0,-5 1|0:1:-4.7,-0,-4.4 1|1:2:-5,-2.61,-0 1|1:2:-5,-1.4,-0.02 1|1:1.55:-5,-0.19,-0.45 22 50724206 . A G 100 PASS THETA=0.0014;AN=2184;VT=SNP;AC=31;ERATE=0.0075;AA=A;RSQ=0.7055;LDAF=0.02;SNPSOURCE=EXOME;AVGPOST=0.9841;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.28,-5 0|0:0.5:-1.81,-0.01,-5 22 50724207 rs28553432 G A 100 PASS AC=387;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.1765;RSQ=0.9946;AVGPOST=0.9973;ERATE=0.0003;AF=0.18;ASN_AF=0.06;AMR_AF=0.08;AFR_AF=0.57;EUR_AF=0.06 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724209 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724324 rs138005986 T A 100 PASS AA=T;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;RSQ=0.7073;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-3.18,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724401 rs149543177 G C 100 PASS THETA=0.0009;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=13;RSQ=0.9744;LDAF=0.0062;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.08,-0.79,-3.21 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724473 rs190686647 G C 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;RSQ=0.7457;VT=SNP;LDAF=0.0006;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.73,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724504 rs144108995 C T 100 PASS AA=C;LDAF=0.0068;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9152;AC=15;ERATE=0.0003;AVGPOST=0.9984;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.52,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.99,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724515 . G A 100 PASS AA=G;AN=2184;RSQ=0.8251;AVGPOST=0.9996;VT=SNP;THETA=0.0017;SNPSOURCE=EXOME;LDAF=0.0011;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724593 rs117199604 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0178;VT=SNP;AVGPOST=0.9993;RSQ=0.9868;ERATE=0.0003;AC=39;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724648 . G A 100 PASS RSQ=0.7151;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724666 rs148722170 G A 100 PASS LDAF=0.0013;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.8296;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724712 . G T 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724731 rs183184653 G T 100 PASS AC=7;LDAF=0.0033;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9734;THETA=0.0007;ERATE=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724733 rs55709850 G T 100 PASS LDAF=0.2782;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=605;ERATE=0.0003;AVGPOST=0.9965;AF=0.28;ASN_AF=0.33;AMR_AF=0.17;AFR_AF=0.29;EUR_AF=0.28 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50724751 . G A 100 PASS THETA=0.0023;RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.74,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50724910 rs116107692 G A 100 PASS AA=G;AN=2184;AC=13;THETA=0.0008;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0069;RSQ=0.8882;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.32,-5 0|0:0:-0.22,-0.46,-1.3 0|0:0:-0.1,-0.69,-3.8 0|0:0:-0.06,-0.87,-5 0|0:0:-0.03,-1.14,-5 22 50724970 rs112205322 G A 100 PASS ERATE=0.0005;LDAF=0.0024;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.4238;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.05,-5 0|0:0:-0.11,-0.65,-4.7 22 50725136 rs188122612 C T 100 PASS ERATE=0.0004;AN=2184;LDAF=0.001;VT=SNP;AA=c;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5696;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.88,-5 0|0:0:-0.19,-0.46,-2.97 22 50725182 rs192593603 C T 100 PASS ERATE=0.0004;LDAF=0.0021;AA=C;AN=2184;RSQ=0.3648;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9968;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.07,-0.83,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0.2:-0.13,-0.59,-2.11 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.18,-0.46,-3.04 22 50725237 rs140030949 G C 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9969;AC=43;SNPSOURCE=LOWCOV;RSQ=0.9437;ERATE=0.0007;LDAF=0.021;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.07,-0.84,-5 0|0:0:-0.3,-0.43,-0.88 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.15,-0.54,-3.24 0|0:0:-0.19,-0.45,-2.15 22 50725301 rs28366595 G A 100 PASS RSQ=0.9739;AVGPOST=0.9912;AC=322;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.1488;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.15;ASN_AF=0.27;AMR_AF=0.07;AFR_AF=0.14;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.08,-0.79,-3.19 0|0:0:-0.1,-0.7,-4.7 0|0:0.05:-0.34,-0.39,-0.87 22 50725425 rs115683129 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=3;LDAF=0.0031;RSQ=0.5605;AVGPOST=0.9965;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.09,-0.74,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50725427 rs182582563 G A 100 PASS ERATE=0.0004;LDAF=0.0036;AVGPOST=0.9983;AA=G;AN=2184;AC=6;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.7732;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50725498 rs187717634 C A 100 PASS ERATE=0.0005;RSQ=0.6578;AA=T;AN=2184;VT=SNP;AVGPOST=0.9922;AC=15;THETA=0.0012;SNPSOURCE=LOWCOV;LDAF=0.0089;AF=0.01;ASN_AF=0.02;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.18,-0.47,-3.08 22 50725514 rs192488861 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;AC=13;RSQ=0.8809;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;LDAF=0.0069;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.05,-0.94,-5 0|0:0:-0.18,-0.47,-3.07 22 50725516 rs56942534 C T 100 PASS LDAF=0.0384;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=78;RSQ=0.8616;ERATE=0.0007;THETA=0.0003;AVGPOST=0.9856;AF=0.04;ASN_AF=0.12;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.89,-5 0|0:0:-0.2,-0.48,-1.46 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.05,-0.94,-5 0|0:0:-0.18,-0.47,-3.08 22 50725553 rs28513473 T C 100 PASS LDAF=0.1633;AA=C;AVGPOST=0.9896;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.001;AC=355;RSQ=0.9693;AF=0.16;ASN_AF=0.27;AMR_AF=0.07;AFR_AF=0.2;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.12,-0.63,-3.28 0|0:0:-0.13,-0.6,-2.15 0|0:0:-0.09,-0.75,-5 0|0:0:-0.11,-0.67,-5 22 50725610 rs185099497 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;RSQ=0.4344;LDAF=0.0017;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 0|0:0:-0.03,-1.22,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.15,-0.52,-3.92 22 50725919 rs188975544 C T 100 PASS AC=12;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9944;VT=SNP;RSQ=0.7122;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.0075;AF=0.01;ASN_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.2,-0.45,-2.1 0|0:0:-0.07,-0.81,-5 0|0:0.05:-0.48,-0.48,-0.48 22 50726237 . G T 100 PASS ERATE=0.0005;AVGPOST=0.9985;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.4815;SNPSOURCE=EXOME;AC=1;LDAF=0.0012;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-1.95,-5 0|0:0:-0.22,-0.46,-1.34 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0,-2.12,-5 0|0:0:-0.02,-1.42,-5 22 50726240 rs77645973 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.998;ERATE=0.0003;LDAF=0.0184;AC=39;RSQ=0.9562;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.91,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.23,-0.45,-1.2 0|0:0:-0.01,-1.6,-5 0|0:0:-0.02,-1.41,-5 22 50726286 rs113531897 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.9565;AN=2184;AC=26;VT=SNP;THETA=0.0006;LDAF=0.0122;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.62,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.02,-1.26,-5 0|0:0:-0.02,-1.45,-5 22 50726459 rs192965378 C T 100 PASS ERATE=0.0004;AVGPOST=0.9977;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=5;SNPSOURCE=LOWCOV;RSQ=0.6881;LDAF=0.0031;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.25,-5 0|0:0:-0.01,-1.58,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.12,-5 0|0:0:-0.06,-0.9,-5 22 50726477 rs184734526 G A 100 PASS ERATE=0.0005;RSQ=0.4273;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0019;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0.05:-0.37,-0.24,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.23,-0.46,-1.23 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.06,-0.91,-5 22 50726510 rs114105729 C T 100 PASS ERATE=0.0004;RSQ=0.9405;AVGPOST=0.9986;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=20;LDAF=0.0098;VT=SNP;THETA=0.0003;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.13,-0.59,-2.84 0|0:0:-0.05,-0.97,-5 0|0:0:-0.11,-0.66,-5 22 50726524 rs114655723 A C 100 PASS THETA=0.0009;AN=2184;AVGPOST=0.9947;RSQ=0.9305;VT=SNP;AA=A;AC=59;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0293;AF=0.03;AMR_AF=0.01;AFR_AF=0.11;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.05,-0.99,-5 0|0:0:-0.1,-0.67,-5 22 50726611 rs75164234 G A 100 PASS RSQ=0.9848;LDAF=0.0305;AA=G;AN=2184;VT=SNP;AC=67;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.03;AMR_AF=0.01;AFR_AF=0.13 GT:DS:GL 0|0:0:-0.04,-1.03,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.23,-0.46,-1.24 0|0:0:-0.04,-1.09,-5 0|0:0:-0.06,-0.87,-5 22 50726627 rs58705604 G A 100 PASS AC=88;ERATE=0.0005;AVGPOST=0.9963;AA=G;AN=2184;VT=SNP;LDAF=0.0415;RSQ=0.9636;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.04;ASN_AF=0.05;AMR_AF=0.02;AFR_AF=0.08;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.04,-1.02,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.23,-0.46,-1.21 0|0:0:-0.05,-1,-5 0|0:0:-0.19,-0.45,-2.15 22 50726661 rs77224694 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;RSQ=0.7021;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.05,-0.93,-5 0|0:0:-0.11,-0.64,-4 22 50726673 rs117439977 G A 100 PASS RSQ=0.8763;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=71;ERATE=0.0006;LDAF=0.0359;AVGPOST=0.9882;AF=0.03;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.02,-1.4,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.19,-0.45,-2.16 0|0:0:-0.02,-1.42,-5 0|0:0:-0.11,-0.64,-4 22 50726701 rs145440088 G A 100 PASS AC=7;ERATE=0.0004;AA=G;AN=2184;RSQ=0.7954;THETA=0.0008;VT=SNP;LDAF=0.0038;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.0032;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.08,-0.79,-3.36 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.02,-1.42,-5 0|0:0:-0.06,-0.89,-5 22 50726776 rs189660980 C A 100 PASS AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0029;ERATE=0.0003;AVGPOST=0.9987;RSQ=0.3517;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.22,-0.46,-1.34 0|0:0:-0.02,-1.4,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.01,-1.64,-5 22 50726967 rs113214119 G A 100 PASS AA=G;AN=2184;VT=SNP;LDAF=0.0019;RSQ=0.6761;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=3;ERATE=0.0007;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.4,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-1.96,-5 22 50727152 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727290 rs147728569 G A 100 PASS ERATE=0.0005;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.7882;AVGPOST=0.9989;LDAF=0.0023;AC=4;THETA=0.0007;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727308 rs142515133 C A 100 PASS AN=2184;AC=6;THETA=0.0005;VT=SNP;AA=c;RSQ=0.9195;LDAF=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727327 rs117798886 G T 100 PASS AVGPOST=0.9985;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=8;LDAF=0.0037;THETA=0.0008;VT=SNP;ERATE=0.0003;RSQ=0.8432;AF=0.0037;ASN_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.4,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727333 rs149855949 G A 100 PASS AA=C;AVGPOST=0.9994;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.6373;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727340 rs185998657 G C 100 PASS THETA=0.0009;ERATE=0.0005;RSQ=0.6829;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727350 rs188324222 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7571;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-2.57,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727399 rs145844372 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.7933;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.03,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727443 . G C 100 PASS THETA=0.0023;AA=G;AN=2184;VT=SNP;LDAF=0.0019;RSQ=0.9546;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=4;ERATE=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.08,-0.78,-5 0|0:0:-0.01,-1.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50727512 rs28696899 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9593;AVGPOST=0.9991;ERATE=0.0003;AC=19;LDAF=0.0091;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-1.96,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.62,-5 22 50727513 rs143051588 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.5433;VT=SNP;AC=1;AVGPOST=0.9984;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-1.97,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.23,-0.46,-1.24 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.51,-5 22 50727576 rs138522984 G A 100 PASS ERATE=0.0004;LDAF=0.0021;AA=G;AN=2184;VT=SNP;RSQ=0.7335;SNPSOURCE=LOWCOV;AC=4;THETA=0.001;AVGPOST=0.9987;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.04,-1.04,-4.4 0|0:0:-0,-3.74,-5 0|0:0:-0,-3.04,-5 22 50727632 rs181871247 C T 100 PASS LDAF=0.0009;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0006;RSQ=0.4807;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0,-2.56,-5 0|0:0:-0.01,-1.67,-5 22 50727645 rs140306060 T A 100 PASS ERATE=0.0005;AVGPOST=0.9986;THETA=0.0022;AA=T;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.4466;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.56,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.05,-0.99,-5 22 50727695 rs115861479 G A 100 PASS THETA=0.0004;AA=G;AN=2184;AC=13;VT=SNP;LDAF=0.0061;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.961;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.12,-5 0|0:0:-0.09,-0.73,-3.02 0|0:0:-0.13,-0.59,-2.13 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.86,-5 22 50727710 rs116230805 A G 100 PASS AA=G;AN=2184;AC=13;VT=SNP;AVGPOST=0.9993;RSQ=0.9567;LDAF=0.0061;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0.07,-0.81,-3.42 0|0:0:-0.13,-0.6,-2.18 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.21,-5 22 50727782 rs62241207 G A 100 PASS LDAF=0.0132;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AVGPOST=0.9958;AC=25;RSQ=0.8653;AF=0.01;AMR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0.5:-0.12,-0.6,-3.05 0|0:0:-0.06,-0.92,-5 0|0:0:-0.08,-0.75,-5 22 50727792 rs28573806 T C 100 PASS AA=C;AN=2184;AC=966;VT=SNP;THETA=0.0006;ERATE=0.0008;RSQ=0.9907;SNPSOURCE=LOWCOV;LDAF=0.4423;AVGPOST=0.9937;AF=0.44;ASN_AF=0.56;AMR_AF=0.26;AFR_AF=0.5;EUR_AF=0.4 GT:DS:GL 0|0:0:-0,-3.3,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.11,-0.64,-3.28 1|0:1:-5,-0.5,-0.17 0|0:0:-0.09,-0.71,-5 22 50727794 rs145322724 G A 100 PASS AC=12;AA=G;AN=2184;RSQ=0.8849;VT=SNP;LDAF=0.0056;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;AVGPOST=0.9984;AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.25,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.04,-1.02,-5 0|0:0:-0.03,-1.22,-5 22 50727899 rs138045888 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=10;AVGPOST=0.9989;LDAF=0.0048;ERATE=0.0003;RSQ=0.8911;AF=0.0046;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.27,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0.08,-0.78,-4.7 0|0:0:-0,-2.28,-5 0|0:0:-0,-3.21,-5 22 50727921 rs28578714 T C 100 PASS AC=953;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.4366;ERATE=0.0008;RSQ=0.9913;AVGPOST=0.9941;AF=0.44;ASN_AF=0.56;AMR_AF=0.25;AFR_AF=0.49;EUR_AF=0.4 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.08,-0.79,-3.19 1|0:1:-5,0,-5 0|0:0:-0,-4.22,-5 22 50727931 rs186384452 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.6008;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.78,-5 0|0:0:-0.08,-0.79,-3.17 0|0:0:-0,-2.93,-5 0|0:0:-0,-4.1,-5 22 50728062 rs28379706 T C 100 PASS ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9935;VT=SNP;AVGPOST=0.9955;AC=1049;THETA=0.0003;LDAF=0.4794;AF=0.48;ASN_AF=0.56;AMR_AF=0.27;AFR_AF=0.66;EUR_AF=0.4 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50728168 rs141718957 G A 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.906;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0101;AC=21;AVGPOST=0.9974;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.1,-0.68,-2.73 0|0:0:-0.23,-0.46,-1.24 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728170 . C T 100 PASS AA=C;RSQ=0.6637;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.22,-0.46,-1.26 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728219 . C G 100 PASS ERATE=0.0005;AA=C;AN=2184;RSQ=0.5945;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728355 rs75911819 G A 100 PASS AC=17;LDAF=0.0078;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9916;VT=SNP;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728478 . T C 100 PASS ERATE=0.0004;AA=T;AN=2184;AVGPOST=0.9997;RSQ=0.7457;VT=SNP;THETA=0.0037;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728600 . G A 100 PASS THETA=0.005;AA=g;AN=2184;VT=SNP;RSQ=0.8178;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-2.62,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728606 . G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.7933;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-2.28,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728774 . C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.0622;THETA=0.0006;SNPSOURCE=EXOME;AC=0;LDAF=0.0002;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728777 rs190437260 C T 100 PASS ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.7082;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.0007;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.01,-1.87,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50728966 rs76654220 T C 100 PASS AC=12;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.7446;VT=SNP;THETA=0.0006;LDAF=0.0076;AA=N;ERATE=0.0007;AVGPOST=0.995;AF=0.01;ASN_AF=0.02;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.74,-5 0|0:0:-0.06,-0.86,-3.74 0|0:0:-0.13,-0.6,-2.21 0|0:0:0,-5,-5 0|0:0:-0,-3.11,-5 22 50728969 rs149323706 G T 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=g;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.4657;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.13,-0.6,-2.17 0|0:0:0,-5,-5 0|0:0:-0,-3.02,-5 22 50729021 . C T 100 PASS LDAF=0.0009;AA=C;THETA=0.0035;AN=2184;VT=SNP;RSQ=0.5903;AVGPOST=0.9991;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.09,-0.74,-2.92 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.5,-5 22 50729355 rs111676082 G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0067;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8537;AVGPOST=0.9984;LDAF=0.0045;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.01,-1.52,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.02,-1.37,-5 22 50729382 rs181791620 C T 100 PASS RSQ=0.5854;AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.12,-0.62,-4 0|0:0:-0.03,-1.12,-5 0|0:0:-0.07,-0.82,-5 22 50729567 rs139856828 G T 100 PASS THETA=0.0009;AA=G;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.5787;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.82,-4.7 0|0:0:-0,-2.47,-5 0|0:0:-0.18,-0.47,-3.07 22 50729700 rs186304265 G A 100 PASS ERATE=0.0004;RSQ=0.4156;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;LDAF=0.0017;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.08,-0.79,-4.1 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0.01,-1.86,-5 0|0:0:-0.48,-0.48,-0.48 22 50729701 rs113982993 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;AC=34;RSQ=0.9845;LDAF=0.0157;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.02;AMR_AF=0.02;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.1,-0.7,-3.62 0|0:0:-0.2,-0.45,-2.13 0|0:0:-0,-2,-5 0|0:0:-0.48,-0.48,-0.48 22 50729732 rs143928900 G A 100 PASS RSQ=0.3727;LDAF=0.0021;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9968;ERATE=0.0006;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.05,-0.93,-4.7 0|0:0:-0.05,-0.98,-4.7 0|0:0:-0.01,-1.68,-5 0|0:0:-0.48,-0.48,-0.48 22 50729859 rs191216352 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.8155;AVGPOST=0.999;VT=SNP;THETA=0.0091;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.26,-5 0|0:0:-0,-2.13,-5 0|0:0:-0.05,-1,-4.22 0|0:0:-0.19,-0.46,-2.37 0|0:0:-0.02,-1.46,-5 22 50730220 rs28415976 A G 100 PASS ERATE=0.0027;RSQ=0.9703;AA=G;AN=2184;VT=SNP;AVGPOST=0.9823;SNPSOURCE=LOWCOV;THETA=0.0043;AC=769;LDAF=0.352;AF=0.35;ASN_AF=0.34;AMR_AF=0.23;AFR_AF=0.51;EUR_AF=0.32 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.12,-0.62,-3.17 1|0:0.95:-0.11,-0.66,-4.7 0|0:0:-0.11,-0.65,-4.7 22 50730250 rs183428696 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0019;THETA=0.0045;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.566;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.12,-0.62,-3.14 0|0:0:-0.15,-0.53,-2.74 0|0:0.05:-0.48,-0.48,-0.48 22 50730304 rs77759477 C G 100 PASS AC=105;AA=C;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.9913;SNPSOURCE=LOWCOV;THETA=0.002;LDAF=0.0501;RSQ=0.9314;AF=0.05;ASN_AF=0.04;AMR_AF=0.02;AFR_AF=0.11;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.12,-0.62,-3.19 0|0:0.2:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.91,-5 22 50730319 rs147264558 T C 100 PASS AVGPOST=0.9936;AA=T;AN=2184;VT=SNP;RSQ=0.6722;AC=14;LDAF=0.0085;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0034;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0.1:-0.19,-0.45,-2.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.91,-5 22 50730320 rs28412679 T C 100 PASS AA=C;LDAF=0.4846;AN=2184;THETA=0.0077;VT=SNP;AVGPOST=0.9562;RSQ=0.9334;SNPSOURCE=LOWCOV;ERATE=0.0084;AC=1061;AF=0.49;ASN_AF=0.64;AMR_AF=0.29;AFR_AF=0.46;EUR_AF=0.48 GT:DS:GL 0|1:1:-5,0,-5 0|0:0.1:-0.19,-0.45,-2.2 0|0:0.15:-0.48,-0.48,-0.48 1|0:1.05:-0.48,-0.48,-0.48 1|0:1:-2.53,-0,-4.7 22 50730458 rs28535173 G T 100 PASS ERATE=0.0005;THETA=0.0015;AA=T;AN=2184;LDAF=0.6897;VT=SNP;AC=1506;RSQ=0.9686;SNPSOURCE=LOWCOV;AVGPOST=0.9819;AF=0.69;ASN_AF=0.76;AMR_AF=0.61;AFR_AF=0.59;EUR_AF=0.74 GT:DS:GL 0|1:1.05:-5,-0.03,-1.25 0|0:0:-0.01,-1.71,-5 1|1:2:-5,-0.68,-0.1 1|1:2:-5,-1.51,-0.01 1|1:2:-5,-1.57,-0.01 22 50730504 rs148772979 C T 100 PASS AA=C;RSQ=0.9466;AN=2184;AVGPOST=0.9975;VT=SNP;LDAF=0.0192;THETA=0.0006;AC=41;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.02,-1.39,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.21,-0.44,-1.95 0|0:0:-0.05,-0.93,-5 0|0:0:-0.07,-0.85,-5 22 50730533 rs142378898 G A 100 PASS THETA=0.0054;AA=G;AN=2184;AC=8;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.6925;AVGPOST=0.9961;ERATE=0.0007;LDAF=0.0055;AF=0.0037;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.48,-0.48,-0.48 22 50730689 rs28647302 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;RSQ=0.5191;VT=SNP;LDAF=0.0039;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9955;THETA=0.0062;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0.23,-0.45,-1.22 0|0:0:-0.2,-0.45,-2.14 0|0:0:-0.1,-0.69,-4.22 0|0:0:-0.24,-0.41,-1.48 22 50730871 rs139431093 A T 100 PASS ERATE=0.0005;LDAF=0.0021;AN=2184;AVGPOST=0.9967;VT=SNP;THETA=0.0006;AA=A;RSQ=0.3505;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0.19,-0.45,-2.21 0|0:0:-0.1,-0.71,-4.4 0|0:0:-0,-2.29,-5 0|0:0:-0.07,-0.82,-5 22 50730909 rs114140424 C T 100 PASS AA=C;AN=2184;AC=8;LDAF=0.0037;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;RSQ=0.8802;AF=0.0037;ASN_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0,-3.13,-5 0|0:0:-0.19,-0.46,-2.15 22 50730937 rs144488854 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;THETA=0.0049;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;RSQ=0.6891;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 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50731259 rs189950605 C T 100 PASS ERATE=0.0004;THETA=0.0039;AA=C;AN=2184;RSQ=0.579;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0.05:-0.01,-1.82,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.08,-0.75,-5 0|0:0:-0.07,-0.84,-5 22 50731310 rs28607360 A G 100 PASS LDAF=0.2255;AA=G;AN=2184;ERATE=0.0009;RSQ=0.9823;VT=SNP;THETA=0.0011;AC=488;SNPSOURCE=LOWCOV;AVGPOST=0.992;AF=0.22;ASN_AF=0.27;AMR_AF=0.16;AFR_AF=0.12;EUR_AF=0.28 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.12,-0.62,-3.17 1|0:1:-0.19,-0.46,-2.4 0|0:0:-0.11,-0.64,-4 22 50731324 rs183309524 C G 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;RSQ=0.7312;AVGPOST=0.999;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.12,-0.63,-3.28 0|0:0:-0.22,-0.42,-1.74 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50731396 rs34402209 GC G 402 PASS RSQ=0.9325;LDAF=0.3768;AN=2184;VT=INDEL;AC=815;ERATE=0.0035;AVGPOST=0.9547;THETA=0.0003;AF=0.37;ASN_AF=0.3;AMR_AF=0.24;AFR_AF=0.66;EUR_AF=0.3 GT:DS:GL 0|0:0:0,-1.5,-19.7 0|0:0:0,0,0 0|0:0.15:0,0,0 1|0:1:0,0,0 0|0:0.1:0,0,0 22 50731402 . CA C 62 PASS RSQ=0.7064;AVGPOST=0.8443;AN=2184;VT=INDEL;THETA=0.0005;LDAF=0.2444;AC=511;ERATE=0.0107;AF=0.23;ASN_AF=0.18;AMR_AF=0.15;AFR_AF=0.44;EUR_AF=0.19 GT:DS:GL 0|0:0:0,-1.5,-22.7 0|0:0.2:0,0,0 0|0:0.05:0,0,0 1|0:1:0,0,0 0|0:0:0,0,0 22 50731412 rs187947734 C T 100 PASS ERATE=0.0005;AA=C;LDAF=0.0035;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.678;AC=5;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.88,-5 0|0:0.05:-0.12,-0.62,-2.42 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50731425 rs117274589 C T 100 PASS THETA=0.0009;ERATE=0.0004;AA=C;AVGPOST=0.9907;AN=2184;AC=20;VT=SNP;LDAF=0.0122;SNPSOURCE=LOWCOV;RSQ=0.7327;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50731519 rs140218829 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8077;THETA=0.0006;LDAF=0.0061;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.02,-1.29,-5 0|0:0:-0.18,-0.47,-2.12 0|0:0:-0.07,-0.85,-5 22 50731608 rs145361155 G T 100 PASS THETA=0.0102;ERATE=0.0004;RSQ=0.7935;LDAF=0.0103;AA=G;AN=2184;AVGPOST=0.9947;VT=SNP;SNPSOURCE=LOWCOV;AC=19;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.28,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.05,-0.98,-4.7 0|0:0:-0.03,-1.14,-5 0|0:0:-0.07,-0.85,-5 22 50731673 rs193050255 G T 100 PASS ERATE=0.0004;THETA=0.0022;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6065;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.57,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.12,-0.62,-3.12 0|0:0:-0.03,-1.14,-5 0|0:0:-0.2,-0.44,-2.02 22 50731704 rs58535577 C T 100 PASS RSQ=0.842;AA=C;AN=2184;VT=SNP;ERATE=0.0011;AC=43;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0225;AVGPOST=0.991;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.11,-0.63,-4.1 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.07,-0.86,-5 22 50731764 rs146442916 G A 100 PASS THETA=0.0014;AA=G;AN=2184;VT=SNP;ERATE=0.0011;RSQ=0.3203;SNPSOURCE=LOWCOV;LDAF=0.0048;AC=3;AVGPOST=0.992;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.08,-0.76,-3.06 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.64,-4 22 50731808 rs28396846 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9766;VT=SNP;ERATE=0.002;SNPSOURCE=LOWCOV;RSQ=0.948;LDAF=0.2182;AC=470;AF=0.22;ASN_AF=0.27;AMR_AF=0.16;AFR_AF=0.07;EUR_AF=0.29 GT:DS:GL 0|0:0:-0.05,-0.96,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.58,-2.09 1|0:1:-0.87,-0.39,-0.34 0|0:0:-0.48,-0.48,-0.48 22 50731819 rs185192622 C T 100 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9936;AA=C;LDAF=0.012;AN=2184;AC=26;VT=SNP;RSQ=0.7917;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.13,-0.59,-2.15 0|0:0:-0.11,-0.64,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50731902 . CT C 75 PASS ERATE=0.0042;AN=2184;RSQ=0.4473;VT=INDEL;THETA=0.0005;LDAF=0.0437;AC=60;AVGPOST=0.9417;AF=0.03;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-0.3,-4.8 0|0:0.05:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0.05:0,0,0 22 50731903 rs28455041 T C 100 PASS AC=762;THETA=0.0009;AA=C;AN=2184;VT=SNP;ERATE=0.0017;AVGPOST=0.9826;LDAF=0.3514;RSQ=0.9686;SNPSOURCE=LOWCOV;AF=0.35;ASN_AF=0.3;AMR_AF=0.23;AFR_AF=0.55;EUR_AF=0.31 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:1:-0.14,-0.56,-3.52 0|0:0:-0.19,-0.45,-2.11 22 50732081 rs116427942 G A 100 PASS THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9894;VT=SNP;ERATE=0.001;LDAF=0.0238;AC=44;SNPSOURCE=LOWCOV;RSQ=0.8052;AF=0.02;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.07;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.11,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.19,-0.45,-2.13 22 50732384 rs143158163 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.5909;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.22,-0.42,-1.69 0|0:0:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 22 50732509 rs148244608 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9972;LDAF=0.0197;THETA=0.0005;VT=SNP;RSQ=0.9358;SNPSOURCE=LOWCOV;AC=42;AF=0.02;ASN_AF=0.01;AMR_AF=0.09;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.03,-1.18,-5 0|0:0:-0.17,-0.49,-2.67 22 50732510 rs28581366 G A 100 PASS ERATE=0.0014;RSQ=0.9723;AC=414;AA=G;AN=2184;VT=SNP;LDAF=0.1917;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9892;AF=0.19;ASN_AF=0.26;AMR_AF=0.14;AFR_AF=0.05;EUR_AF=0.25 GT:DS:GL 0|0:0:-0.16,-0.51,-2.87 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.2,-0.44,-2.01 1|0:1:-4.4,-0,-3.22 0|0:0.05:-0.18,-0.47,-2.51 22 50732572 rs188108833 G A 100 PASS THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9952;ERATE=0.0009;VT=SNP;AC=9;LDAF=0.0049;SNPSOURCE=LOWCOV;RSQ=0.6502;AF=0.0041;ASN_AF=0.0035;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.04,-1.04,-5 0|0:0:-0.04,-1.01,-5 22 50732582 rs192688445 C T 100 PASS ERATE=0.0004;RSQ=0.6576;LDAF=0.0033;AA=C;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0.05:-2.34,-0.02,-1.31 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.97,-5 0|0:0:-0.06,-0.88,-5 22 50732640 rs184165619 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;RSQ=0.3463;VT=SNP;LDAF=0.0019;AVGPOST=0.9969;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.09,-0.72,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.19,-0.46,-2.38 0|0:0:-0.02,-1.37,-5 22 50732799 rs188067722 G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.824;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.09,-0.74,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.01,-1.56,-5 22 50732811 . 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0|0:0:-0.06,-0.88,-5 22 50735832 rs143727112 T C 100 PASS ERATE=0.0005;LDAF=0.0009;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5624;THETA=0.0003;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2.52,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.02,-1.36,-5 22 50735872 rs75224671 C T 100 PASS ERATE=0.0004;AVGPOST=0.9986;THETA=0.0023;AA=C;AN=2184;VT=SNP;AC=135;LDAF=0.0619;RSQ=0.9898;SNPSOURCE=LOWCOV;AF=0.06;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.19;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.97,-5 0|0:0:-0,-2.24,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0,-2.46,-5 22 50735887 rs185826102 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.764;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.25,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.17,-0.5,-2.84 0|0:0:-0,-2.42,-5 22 50736063 rs189704079 G A 100 PASS 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0|0:0:-0,-2.01,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.5,-5 22 50736370 rs118092635 C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;LDAF=0.0173;THETA=0.0005;VT=SNP;AC=38;RSQ=0.9845;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.01;AMR_AF=0.09;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.01,-1.61,-5 22 50736409 rs28473629 T C 100 PASS ERATE=0.0004;LDAF=0.0683;AA=T;AN=2184;AC=149;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;RSQ=0.9955;AVGPOST=0.9992;AF=0.07;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.22;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0,-2.06,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.09,-0.75,-5 0|0:0:-0.02,-1.38,-5 22 50736503 rs182367182 C T 100 PASS AC=7;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.6652;AVGPOST=0.9969;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0032;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0.05:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.03,-1.15,-5 0|0:0:-0.19,-0.46,-2.97 22 50736646 rs150843172 G C 100 PASS AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9267;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.07,-0.84,-4.4 0|0:0:-0.12,-0.61,-3.1 0|0:0:-0.07,-0.85,-5 0|0:0:-0.2,-0.45,-2.04 22 50736682 rs113557774 T C 100 PASS ERATE=0.0005;THETA=0.0023;AA=C;AVGPOST=0.9983;AN=2184;VT=SNP;LDAF=0.0537;RSQ=0.9867;AC=116;SNPSOURCE=LOWCOV;AF=0.05;AMR_AF=0.03;AFR_AF=0.21 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.04,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.05,-0.96,-5 0|0:0:-0.07,-0.86,-5 22 50736787 rs68097952 A G 100 PASS RSQ=0.9831;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=598;THETA=0.002;AVGPOST=0.992;LDAF=0.2749;AF=0.27;ASN_AF=0.27;AMR_AF=0.19;AFR_AF=0.32;EUR_AF=0.29 GT:DS:GL 0|0:0:-0.02,-1.27,-5 0|0:0.05:-0.12,-0.63,-3.3 0|0:0:-0.19,-0.46,-2.2 1|0:1:-5,-0.89,-0.06 0|0:0:-0.12,-0.63,-4.7 22 50736838 rs142911900 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;THETA=0.0038;LDAF=0.0037;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.995;RSQ=0.4991;AF=0.0023;ASN_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.62,-5 0|0:0:-0.22,-0.46,-1.29 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.42,-5 0|0:0:-0.18,-0.47,-3.05 22 50737098 rs187689006 C G 100 PASS ERATE=0.0005;AA=C;AN=2184;VT=SNP;LDAF=0.0019;RSQ=0.6884;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.02,-1.36,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0.07,-0.84,-5 22 50737129 rs28711487 T C 100 PASS RSQ=0.9785;AVGPOST=0.9868;AA=C;AN=2184;VT=SNP;ERATE=0.001;THETA=0.0017;LDAF=0.3427;SNPSOURCE=LOWCOV;AC=751;AF=0.34;ASN_AF=0.3;AMR_AF=0.23;AFR_AF=0.55;EUR_AF=0.3 GT:DS:GL 0|0:0:-0,-2.2,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.06,-0.86,-5 1|0:1:-4.7,-0.02,-1.41 0|0:0:-0.04,-1.02,-5 22 50737264 rs112047368 G A 100 PASS ERATE=0.0004;AVGPOST=0.9986;THETA=0.0004;AA=G;AN=2184;AC=37;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9654;LDAF=0.0176;AF=0.02;AMR_AF=0.02;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.08,-0.8,-4.7 0|0:0:-0.07,-0.82,-4.7 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.06,-0.86,-5 22 50737453 rs192001312 G A 100 PASS RSQ=0.3568;LDAF=0.0016;AA=G;AN=2184;ERATE=0.0009;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9978;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.12,-0.61,-3.12 0|0:0:-0.06,-0.9,-5 0|0:0:-0.06,-0.88,-5 22 50737584 rs28607359 G T 100 PASS ERATE=0.0004;AA=T;AN=2184;RSQ=0.9774;VT=SNP;LDAF=0.2532;AC=554;SNPSOURCE=LOWCOV;THETA=0.0113;AVGPOST=0.9897;AF=0.25;ASN_AF=0.27;AMR_AF=0.19;AFR_AF=0.25;EUR_AF=0.28 GT:DS:GL 0|0:0:-0.12,-0.63,-4.4 0|0:0:-0.02,-1.28,-5 0|0:0:-0.13,-0.6,-2.98 1|0:1:-5,-0.97,-0.05 0|0:0:-0.19,-0.45,-2.11 22 50737828 rs184219214 T G 100 PASS LDAF=0.3036;AA=T;AN=2184;ERATE=0.054;VT=SNP;AVGPOST=0.6616;RSQ=0.2842;SNPSOURCE=LOWCOV;THETA=0.0007;AC=455;AF=0.21;ASN_AF=0.22;AMR_AF=0.19;AFR_AF=0.15;EUR_AF=0.25 GT:DS:GL 0|1:0.85:-0.41,-0.22,-2.1 0|0:0.5:-0.12,-0.61,-3.15 0|1:0.85:-0.22,-0.46,-1.27 0|0:0.35:-0.48,-0.48,-0.48 0|0:0.45:-0.11,-0.64,-4 22 50738000 rs188376312 C T 100 PASS LDAF=0.0206;AA=C;AC=28;RSQ=0.4469;AN=2184;VT=SNP;AVGPOST=0.9704;ERATE=0.0016;THETA=0.0012;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.12,-0.61,-3.1 0|0:0.15:-0.07,-0.81,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.08 22 50738004 rs140206942 G C 100 PASS LDAF=0.038;AA=G;AN=2184;AC=49;RSQ=0.4877;ERATE=0.0024;VT=SNP;AVGPOST=0.9513;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.02;ASN_AF=0.03;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.12,-0.62,-3.22 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.15 22 50738223 rs143893967 G A 100 PASS AC=62;AN=2184;VT=SNP;RSQ=0.5049;LDAF=0.0452;AA=A;ERATE=0.0019;AVGPOST=0.9435;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.03;ASN_AF=0.07;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.2:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.44 0|0:0.05:-0.19,-0.46,-2.15 22 50738434 rs28647660 A G 100 PASS ERATE=0.0021;RSQ=0.9167;AA=G;AN=2184;AVGPOST=0.9526;VT=SNP;AC=494;SNPSOURCE=LOWCOV;THETA=0.0016;LDAF=0.2368;AF=0.23;ASN_AF=0.16;AMR_AF=0.12;AFR_AF=0.61;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.18,-0.47,-2.38 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50738658 rs193185158 G A 100 PASS ERATE=0.0013;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0074;RSQ=0.5205;SNPSOURCE=LOWCOV;AC=11;AVGPOST=0.992;AF=0.01;ASN_AF=0.01;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.04,-1.07,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.15,-0.55,-3.01 0|0:0:-0.48,-0.48,-0.48 22 50738720 . A ATCG 84 PASS THETA=0.0004;AN=2184;ERATE=0.0009;VT=INDEL;AVGPOST=0.9822;AC=33;RSQ=0.6734;LDAF=0.0203;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-4.6 0|0:0:0,0,0 22 50738744 rs115574928 C A 100 PASS AA=C;LDAF=0.0149;AN=2184;VT=SNP;AC=23;RSQ=0.6701;SNPSOURCE=LOWCOV;ERATE=0.0012;THETA=0.0007;AVGPOST=0.9876;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.19,-0.46,-2.97 22 50738902 rs73437477 G A 100 PASS RSQ=0.891;AA=G;AN=2184;ERATE=0.0009;VT=SNP;LDAF=0.0271;AC=54;AVGPOST=0.9916;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.02;AMR_AF=0.01;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.11,-0.64,-3.34 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.11,-0.65,-4.7 22 50738930 rs28534659 A G 100 PASS LDAF=0.1425;AA=G;AN=2184;RSQ=0.9426;AC=305;VT=SNP;THETA=0.0011;AVGPOST=0.9806;SNPSOURCE=LOWCOV;ERATE=0.0015;AF=0.14;ASN_AF=0.13;AMR_AF=0.06;AFR_AF=0.36;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.21,-0.44,-1.95 0|0:0:-0.05,-0.93,-5 0|0:0:-0.34,-0.39,-0.87 22 50738953 rs148606436 C G 100 PASS ERATE=0.0005;RSQ=0.8672;AN=2184;LDAF=0.0173;VT=SNP;AA=c;AC=32;SNPSOURCE=LOWCOV;AVGPOST=0.9941;THETA=0.0036;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.11,-0.66,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-1.98 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50738967 rs28533833 G C 100 PASS LDAF=0.0483;AVGPOST=0.9957;AA=g;AN=2184;RSQ=0.9641;VT=SNP;AC=103;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0007;AF=0.05;AMR_AF=0.03;AFR_AF=0.19 GT:DS:GL 0|0:0:-0.15,-0.53,-3.62 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.34,-0.39,-0.87 22 50739049 rs73891214 G A 100 PASS ERATE=0.0013;RSQ=0.9443;AA=G;AN=2184;AC=159;LDAF=0.0753;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9891;AF=0.07;ASN_AF=0.11;AMR_AF=0.02;AFR_AF=0.15;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.07,-0.83,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.23,-0.46,-1.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.67,-5 22 50739138 rs111764980 T A 100 PASS AA=T;AN=2184;VT=SNP;AVGPOST=0.9976;THETA=0.0006;LDAF=0.0074;AC=15;RSQ=0.8605;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.63,-3.28 0|0:0:-0.13,-0.6,-2.17 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.02,-1.39,-5 22 50739442 rs76879755 T C 100 PASS ERATE=0.0004;RSQ=0.9589;LDAF=0.0211;AA=T;AN=2184;AVGPOST=0.9979;THETA=0.0008;VT=SNP;AC=44;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.57,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.01,-1.7,-5 0|0:0:-0.03,-1.14,-5 22 50739629 rs142126389 G A 100 PASS AVGPOST=0.9977;AA=G;AN=2184;VT=SNP;RSQ=0.5758;LDAF=0.0023;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;ERATE=0.0007;AF=0.0014;ASN_AF=0.0035;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.11,-0.66,-2.5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.02,-1.39,-5 22 50739693 rs183923321 G C 100 PASS AVGPOST=0.9957;THETA=0.0004;AA=G;AN=2184;LDAF=0.0037;VT=SNP;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.6183;AF=0.0023;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.22,-5 22 50739743 rs28672270 G C 100 PASS ERATE=0.0004;RSQ=0.9503;THETA=0.0004;LDAF=0.0187;AA=G;AN=2184;VT=SNP;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=42;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.05,-1,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-2.9,-5 22 50739843 . C CACAT 1211 PASS AN=2184;VT=INDEL;RSQ=0.6355;THETA=0.0104;ERATE=0.0483;AVGPOST=0.8139;AC=1651;LDAF=0.709;AF=0.76;ASN_AF=0.72;AMR_AF=0.65;AFR_AF=0.88;EUR_AF=0.75 GT:DS:GL 0|1:1:-10.2,0,-2.5 1|0:1:0,0,0 1|1:1.5:0,0,0 1|1:1.8:0,0,0 1|1:1.55:0,0,0 22 50739889 rs115019035 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AC=20;VT=SNP;RSQ=0.9448;AVGPOST=0.9988;LDAF=0.0097;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.55,-5 0|0:0:-0.07,-0.8,-3.4 0|0:0:-0.07,-0.8,-4.1 0|0:0:-0,-2.3,-5 0|0:0:-0.07,-0.85,-5 22 50739927 rs151160606 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;LDAF=0.0046;THETA=0.0008;VT=SNP;AC=9;SNPSOURCE=LOWCOV;AVGPOST=0.9974;RSQ=0.7835;AF=0.0041;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.51,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.13,-0.6,-3.02 0|0:0:-0.02,-1.45,-5 0|0:0:-0.19,-0.46,-2.15 22 50739959 rs187072693 C G 100 PASS AA=C;AN=2184;ERATE=0.0009;RSQ=0.3684;VT=SNP;AVGPOST=0.993;LDAF=0.0044;SNPSOURCE=LOWCOV;THETA=0.0013;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.2,-0.47,-1.45 0|0:0.05:-0.13,-0.59,-2.14 0|0:0:-0.09,-0.71,-5 0|0:0:-0.48,-0.48,-0.48 22 50739985 rs141344216 C T 100 PASS AA=C;AN=2184;RSQ=0.7392;VT=SNP;AC=10;LDAF=0.0059;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AVGPOST=0.9961;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.36,-0.41,-0.77 0|0:0:-0.48,-0.48,-0.48 22 50739989 rs28645770 T G 100 PASS AVGPOST=0.9232;AA=C;THETA=0.0004;AN=2184;ERATE=0.0068;VT=SNP;AC=484;SNPSOURCE=LOWCOV;RSQ=0.8358;LDAF=0.2348;AF=0.22;ASN_AF=0.25;AMR_AF=0.13;AFR_AF=0.25;EUR_AF=0.23 GT:DS:GL 0|1:1:-4.7,-0.01,-1.47 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 1|0:0.6:-0.29,-0.39,-1.13 1|0:0.7:-0.48,-0.48,-0.48 22 50740041 rs78484472 C G 100 PASS AA=C;AN=2184;RSQ=0.8797;VT=SNP;THETA=0.0006;AC=41;SNPSOURCE=LOWCOV;LDAF=0.0195;AVGPOST=0.9941;ERATE=0.0007;AF=0.02;ASN_AF=0.0017;AMR_AF=0.02;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.5,-5 1|0:0.8:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.11,-0.65,-4.7 22 50740216 rs191174933 G A 100 PASS ERATE=0.0004;AVGPOST=0.9963;RSQ=0.3864;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.54,-5 0|0:0:-0.07,-0.83,-5 0|0:0.05:-0.12,-0.61,-3.85 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.34,-0.39,-0.87 22 50740258 rs183635553 G A 100 PASS THETA=0.0015;LDAF=0.0021;AA=G;AN=2184;AVGPOST=0.9967;VT=SNP;RSQ=0.3156;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.34,-0.39,-0.87 22 50740267 rs116198533 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;AC=10;SNPSOURCE=LOWCOV;RSQ=0.9277;THETA=0.0024;LDAF=0.005;AVGPOST=0.9992;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.04,-1.04,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.92 22 50740268 rs117284236 G A 100 PASS ERATE=0.0004;LDAF=0.0202;AA=G;AN=2184;RSQ=0.9713;VT=SNP;THETA=0.0006;AC=43;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.04,-1.01,-4.4 0|0:0:-0.08,-0.79,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.81 22 50740563 rs28495255 G A 100 PASS ERATE=0.0004;AC=52;LDAF=0.024;AA=G;AN=2184;RSQ=0.9688;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.02;AMR_AF=0.01;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.12,-5 0|0:0:-0.1,-0.67,-5 22 50740744 . GA G 213 PASS THETA=0.0022;AN=2184;VT=INDEL;AC=78;AVGPOST=0.9968;ERATE=0.0006;RSQ=0.9637;LDAF=0.0362;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-8.6 0|0:0:0,0,0 22 50740857 rs145268680 G A 100 PASS RSQ=0.9458;AA=G;AN=2184;AC=80;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0367;ERATE=0.0007;AVGPOST=0.995;AF=0.04;ASN_AF=0.11;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.99,-5 0|0:0:-0.07,-0.8,-4.1 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.07,-0.82,-5 0|0:0.05:-0.1,-0.69,-5 22 50740869 rs189613692 T C 100 PASS ERATE=0.0004;LDAF=0.0024;THETA=0.0014;AA=T;AN=2184;VT=SNP;RSQ=0.6775;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.24,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.06,-0.88,-5 0|0:0:-0.06,-0.87,-5 22 50740895 rs113787382 C G 100 PASS RSQ=0.9762;AA=C;AN=2184;VT=SNP;AC=33;THETA=0.0012;LDAF=0.0153;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.02;AMR_AF=0.02;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.11,-0.64,-3.24 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.04,-1.07,-5 22 50740966 rs147612116 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;RSQ=0.5277;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.04,-1.09,-5 0|0:0:-0.06,-0.91,-5 22 50740993 rs75438314 C T 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0321;AC=66;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9951;RSQ=0.9415;AF=0.03;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.55:-0.24,-0.45,-1.13 0|0:0:-0.01,-1.72,-5 0|0:0:-0.06,-0.91,-5 22 50740999 rs117940427 C A 100 PASS RSQ=0.7812;LDAF=0.016;AA=C;AVGPOST=0.9907;AN=2184;AC=29;THETA=0.0008;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.98,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.4:-0.25,-0.45,-1.12 0|0:0:-0.01,-1.86,-5 0|0:0:-0.06,-0.87,-5 22 50741050 rs182090461 C A 100 PASS LDAF=0.0013;AA=C;THETA=0.0004;AN=2184;RSQ=0.7061;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.9,-5 22 50741077 rs114773680 G A 100 PASS LDAF=0.0095;AVGPOST=0.9994;AA=G;AN=2184;AC=20;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0043;ERATE=0.0003;RSQ=0.9677;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.12,-0.62,-2.38 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.02,-1.38,-5 22 50741103 rs115367753 C A 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.9599;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=25;LDAF=0.0114;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.07,-0.82,-5 0|0:0:-0.06,-0.89,-5 22 50741131 rs77778031 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;LDAF=0.0154;AC=33;SNPSOURCE=LOWCOV;THETA=0.0013;RSQ=0.9733;AF=0.02;AMR_AF=0.02;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.01,-1.52,-5 0|0:0.05:-0.12,-0.62,-3.12 0|0:0:-0.87,-0.39,-0.34 0|0:0:-0.1,-0.67,-5 22 50741145 rs28714287 C G 100 PASS LDAF=0.9992;AN=2184;VT=SNP;RSQ=0.0656;AC=2184;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AVGPOST=0.9984;AA=t;AF=1;ASN_AF=1;AMR_AF=1;AFR_AF=1;EUR_AF=1 GT:DS:GL 1|1:2:-4.7,-0.66,-0.11 1|1:2:-2.32,-0.13,-0.59 1|1:2:-2.97,-0.48,-0.18 1|1:2:-2.85,-0.46,-0.19 1|1:2:-5,-0.7,-0.1 22 50741263 rs150160695 G C 100 PASS ERATE=0.0005;AA=G;AN=2184;LDAF=0.004;AC=8;VT=SNP;THETA=0.0006;RSQ=0.8057;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.06,-0.92,-5 0|0:0:-0.02,-1.4,-5 22 50741327 rs138732451 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;RSQ=0.9297;AN=2184;VT=SNP;AC=14;SNPSOURCE=LOWCOV;AVGPOST=0.9987;LDAF=0.0069;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.41,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.26,-5 0|0:0.2:-0.06,-0.89,-5 0|0:0:-0.11,-0.64,-4 22 50741504 rs62241210 C T 100 PASS AA=C;AN=2184;AC=918;VT=SNP;RSQ=0.9842;LDAF=0.4203;SNPSOURCE=LOWCOV;AVGPOST=0.9905;THETA=0.0007;ERATE=0.0006;AF=0.42;ASN_AF=0.45;AMR_AF=0.42;AFR_AF=0.35;EUR_AF=0.44 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-4.4,-0.01,-1.6 1|1:2:-5,-1.24,-0.03 0|1:1:-0.36,-0.41,-0.77 1|1:2:-5,-0.76,-0.08 22 50741589 rs77656965 C T 100 PASS AC=35;AA=C;AN=2184;VT=SNP;AVGPOST=0.998;RSQ=0.9708;LDAF=0.017;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.07,-0.85,-5 0|0:0:-0.01,-1.9,-5 22 50741842 rs185794891 G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.5115;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0006;AC=2;LDAF=0.0017;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.06,-0.87,-4.4 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.07,-0.86,-5 22 50741882 rs148919336 G A 100 PASS ERATE=0.0004;THETA=0.0004;RSQ=0.9742;AA=G;AN=2184;AC=45;LDAF=0.0208;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.08,-0.79,-5 22 50741953 rs143713439 C T 100 PASS AVGPOST=0.9963;AA=C;AN=2184;AC=8;VT=SNP;ERATE=0.0008;RSQ=0.6813;SNPSOURCE=LOWCOV;THETA=0.0013;LDAF=0.0051;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.19,-0.46,-2.32 0|0:0:-0.12,-0.62,-4 0|0:0.05:-0.2,-0.45,-2.13 0|0:0:-0.07,-0.84,-5 0|0:0:-0.12,-0.63,-3.92 22 50742074 rs148101839 C G 100 PASS ERATE=0.0005;RSQ=0.7494;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;THETA=0.0012;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.06,-0.92,-5 0|0:0:-0.04,-1.06,-5 22 50742169 rs142852262 G A 100 PASS AA=G;AN=2184;LDAF=0.0054;ERATE=0.0009;AC=6;RSQ=0.5268;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9929;AF=0.0027;ASN_AF=0.0017;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.8,-5 0|0:0:-0.13,-0.6,-3.06 0|0:0:-0.19,-0.47,-2.24 0|0:0:-0.19,-0.46,-2.04 0|0:0.1:-0.17,-0.5,-3.52 22 50742288 rs28628372 G A 100 PASS ERATE=0.0004;LDAF=0.026;AVGPOST=0.9966;AA=G;AN=2184;VT=SNP;AC=56;RSQ=0.9512;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.03;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.21,-0.43,-1.97 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.06,-0.89,-5 0|0:0:-0.18,-0.47,-3.05 22 50742313 rs146136062 G A 100 PASS THETA=0.0004;AA=G;AN=2184;RSQ=0.6056;VT=SNP;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9968;ERATE=0.0006;LDAF=0.0031;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.13,-0.6,-2.21 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.19,-0.46,-2.9 22 50742346 rs67710834 G C 100 PASS AA=G;AN=2184;ERATE=0.0009;AVGPOST=0.9934;VT=SNP;THETA=0.0006;RSQ=0.988;SNPSOURCE=LOWCOV;AC=686;LDAF=0.313;AF=0.31;ASN_AF=0.33;AMR_AF=0.38;AFR_AF=0.13;EUR_AF=0.39 GT:DS:GL 0|1:1:-1.88,-0.01,-5 1|0:1:-5,-0.01,-1.68 1|1:2:-0.48,-0.48,-0.48 0|1:1:-0.06,-0.92,-5 1|1:2:-4.1,-0.51,-0.16 22 50742394 rs115523566 G A 100 PASS LDAF=0.0151;AA=G;AN=2184;VT=SNP;AC=31;RSQ=0.889;AVGPOST=0.9956;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0006;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.12,-0.62,-3.24 0|0:0.55:-0.45,-0.46,-0.53 0|0:0:-0.15,-0.55,-3 0|0:0:-0.05,-0.94,-5 22 50742607 rs138954327 C G 100 PASS AC=7;ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9975;VT=SNP;LDAF=0.0044;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.7415;AF=0.0032;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.07,-0.83,-5 0|0:0:-0.12,-0.63,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50742611 rs62241211 C A 100 PASS AA=C;RSQ=0.9838;AVGPOST=0.9902;AN=2184;VT=SNP;AC=820;ERATE=0.001;LDAF=0.3751;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.38;ASN_AF=0.44;AMR_AF=0.4;AFR_AF=0.24;EUR_AF=0.41 GT:DS:GL 0|1:1:-1.85,-0.01,-2.15 1|0:1:-2.79,-0.43,-0.2 1|1:2:-5,-0.99,-0.05 0|1:1:-2.26,-0.01,-1.67 1|1:2:-0.48,-0.48,-0.48 22 50742621 rs142277680 C T 100 PASS ERATE=0.0004;RSQ=0.6798;AA=C;AN=2184;VT=SNP;LDAF=0.0028;AC=5;AVGPOST=0.997;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.14,-0.57,-3.4 0|0:0:-0.17,-0.5,-2.82 0|0:0:-0.48,-0.48,-0.48 22 50742721 rs78599223 T A 100 PASS AA=T;AN=2184;AVGPOST=0.9883;VT=SNP;LDAF=0.0242;RSQ=0.813;SNPSOURCE=LOWCOV;AC=50;THETA=0.0007;ERATE=0.0006;AF=0.02;AMR_AF=0.02;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0.03,-1.22,-5 1|0:1:-2.42,-0.09,-0.75 0|0:0:-0.06,-0.89,-5 22 50742750 rs150897588 G C 100 PASS ERATE=0.0005;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=9;RSQ=0.9128;SNPSOURCE=LOWCOV;LDAF=0.0045;AVGPOST=0.9992;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.8,-3.21 0|0:0:-0.02,-1.46,-5 0|0:0:-0.1,-0.67,-5 22 50742935 rs34544325 A G 100 PASS ERATE=0.0023;AA=G;AN=2184;AVGPOST=0.9878;LDAF=0.6508;VT=SNP;RSQ=0.9786;SNPSOURCE=LOWCOV;THETA=0.0007;AC=1427;AF=0.65;ASN_AF=0.67;AMR_AF=0.61;AFR_AF=0.75;EUR_AF=0.6 GT:DS:GL 1|0:1:-5,-0,-4.4 0|1:1:-4,-0.02,-1.27 0|0:0:-0.2,-0.44,-5 1|0:1:-4.4,-0.02,-1.44 0|0:0:-0.04,-1.07,-5 22 50742959 . TG T 92 PASS LDAF=0.0305;AN=2184;VT=INDEL;THETA=0.0005;RSQ=0.8893;AC=68;ERATE=0.0006;AVGPOST=0.9911;AF=0.03;ASN_AF=0.1;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-2.1,-30.3 0|0:0.05:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-4.3 0|0:0:0,-0.3,-4.3 22 50743080 . AC A 151 PASS RSQ=0.766;AN=2184;VT=INDEL;ERATE=0.0016;LDAF=0.0261;AVGPOST=0.9851;AC=42;THETA=0.0003;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-2.8 0|0:0.05:0,0,0 22 50743422 rs139471142 G A 100 PASS ERATE=0.0004;LDAF=0.0027;THETA=0.0026;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;AC=5;SNPSOURCE=LOWCOV;RSQ=0.8358;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0.08,-0.8,-4.1 0|0:0:-0.1,-0.69,-3.8 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.18,-0.47,-3.07 22 50743446 rs149656109 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AC=2;RSQ=0.4745;LDAF=0.0017;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.11,-0.64,-3.36 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.15,-0.54,-3.32 0|0:0:-0.11,-0.66,-5 22 50743455 rs144440043 G A 100 PASS ERATE=0.0004;THETA=0.0054;AA=G;AN=2184;RSQ=0.6749;AVGPOST=0.999;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.9,-5 0|0:0:-0.11,-0.66,-5 22 50743510 rs62241212 G A 100 PASS ERATE=0.0004;LDAF=0.4288;AC=937;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9913;SNPSOURCE=LOWCOV;AVGPOST=0.995;AF=0.43;ASN_AF=0.45;AMR_AF=0.44;AFR_AF=0.38;EUR_AF=0.44 GT:DS:GL 0|1:1:-0.18,-0.48,-2.46 1|0:1:-2.15,-0.02,-1.43 1|1:2:-3.05,-0.49,-0.17 0|1:1:-5,-0,-2.77 1|1:2:-3.55,-0.48,-0.18 22 50743570 rs75446269 C T 100 PASS AC=62;AVGPOST=0.9957;AA=C;THETA=0.0004;LDAF=0.0288;AN=2184;RSQ=0.9424;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.03;AMR_AF=0.01;AFR_AF=0.11;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.17,-0.52,-1.77 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.19,-0.45,-2.13 22 50743630 rs76257646 C A 100 PASS ERATE=0.0005;AA=C;LDAF=0.012;AN=2184;VT=SNP;AC=23;RSQ=0.8576;AVGPOST=0.9954;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.22,-0.46,-1.32 0|0:0:-0.12,-0.63,-4 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50743633 rs74943788 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AC=23;AVGPOST=0.998;RSQ=0.9215;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0108;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50743638 rs78091816 G A 100 PASS ERATE=0.0004;RSQ=0.9746;AA=G;AN=2184;VT=SNP;THETA=0.0027;LDAF=0.0192;AC=41;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.2,-0.45,-2.12 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50743776 rs189915368 G A 100 PASS ERATE=0.0004;AVGPOST=0.9986;LDAF=0.0016;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=2;RSQ=0.6675;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.03,-1.24,-5 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.19,-0.46,-2.16 22 50743827 rs62241213 G A 100 PASS ERATE=0.0005;RSQ=0.9914;AA=G;AN=2184;VT=SNP;AC=822;AVGPOST=0.9948;LDAF=0.3769;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.38;ASN_AF=0.44;AMR_AF=0.4;AFR_AF=0.24;EUR_AF=0.41 GT:DS:GL 0|1:1:-5,-0,-2.95 1|0:1:-1.37,-0.02,-3.27 1|1:2:-5,-1.24,-0.03 0|1:1:-3.04,-0.48,-0.18 1|1:2:-0.48,-0.48,-0.48 22 50743972 rs116384785 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0034;RSQ=0.6929;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9968;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.19,-0.46,-2.17 22 50744048 rs77023739 G A 100 PASS THETA=0.0004;RSQ=0.9609;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0203;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.08,-0.79,-4 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.2,-0.44,-2.02 22 50744303 rs139600485 T C 100 PASS AVGPOST=0.9933;AA=C;AN=2184;AC=26;ERATE=0.0009;VT=SNP;RSQ=0.7768;SNPSOURCE=LOWCOV;LDAF=0.0128;THETA=0.0003;AF=0.01;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.04;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.07,-0.8,-5 0|0:0:-0.24,-0.45,-1.2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 22 50744339 rs73437489 C G 100 PASS LDAF=0.0884;AA=C;THETA=0.0004;AN=2184;AC=191;VT=SNP;AVGPOST=0.9953;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9766;AF=0.09;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.28;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.18,-0.46,-2.78 0|0:0:-0.23,-0.45,-1.21 0|0:0:-0.25,-0.45,-1.12 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.48,-0.48,-0.48 22 50744376 rs77500104 T A 100 PASS ERATE=0.0004;AA=T;AN=2184;AVGPOST=0.988;VT=SNP;AC=10;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.5745;LDAF=0.0104;AF=0.0046;ASN_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.03,-1.21,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.34,-0.39,-0.87 22 50744414 . T TG 232 PASS AC=17;ERATE=0.0005;AN=2184;THETA=0.0001;RSQ=0.775;AVGPOST=0.9947;VT=INDEL;LDAF=0.0094;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.6,-7.4 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50744430 rs35860776 A C 100 PASS AVGPOST=0.9868;AC=30;LDAF=0.0181;AN=2184;RSQ=0.7255;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0.05:-0.1,-0.67,-4.7 0|0:0:-0.17,-0.49,-2.42 0|0:0:-0.28,-0.44,-0.98 0|0:0:-0.06,-0.88,-5 0|0:0:-0.11,-0.67,-5 22 50744669 rs114660075 C T 100 PASS RSQ=0.8866;AA=C;AN=2184;AC=16;THETA=0.0005;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;LDAF=0.0081;ERATE=0.0007;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.07,-0.8,-4.1 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.01,-1.7,-5 22 50744821 rs62241216 A G 100 PASS AVGPOST=0.9578;THETA=0.0004;AA=G;AN=2184;RSQ=0.9374;VT=SNP;LDAF=0.5276;ERATE=0.0116;SNPSOURCE=LOWCOV;AC=1164;AF=0.53;ASN_AF=0.48;AMR_AF=0.48;AFR_AF=0.71;EUR_AF=0.48 GT:DS:GL 0|1:1:-5,-0,-3.14 1|0:1:-5,0,-5 1|1:1.95:-5,-0.07,-0.8 0|1:1:-1.95,-0.01,-3.62 1|1:1.95:-5,-1.57,-0.01 22 50744849 rs147622171 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9944;RSQ=0.6696;VT=SNP;AC=10;LDAF=0.0061;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.0046;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.6,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.04,-1.11,-5 22 50744937 rs185586486 G A 100 PASS ERATE=0.0021;THETA=0.0014;AVGPOST=0.9907;AA=G;AN=2184;VT=SNP;RSQ=0.456;SNPSOURCE=LOWCOV;AC=4;LDAF=0.0065;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.08,-0.79,-4.1 0|0:0:-0.13,-0.6,-2.18 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50745039 rs73437491 G A 100 PASS RSQ=0.9551;AVGPOST=0.9903;AC=188;AA=G;AN=2184;LDAF=0.09;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.09;ASN_AF=0.04;AMR_AF=0.03;AFR_AF=0.27;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.18,-0.47,-2.4 0|0:0:-0.04,-1.04,-5 0|0:0:-0.08,-0.8,-3.21 0|0:0:-0.03,-1.14,-5 0|0:0:-0.48,-0.48,-0.48 22 50745232 rs111424747 G A 100 PASS THETA=0.0023;AA=G;AN=2184;AVGPOST=0.9947;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9411;LDAF=0.0341;AC=71;ERATE=0.0006;AF=0.03;AMR_AF=0.03;AFR_AF=0.12 GT:DS:GL 0|0:0:-0.19,-0.46,-2.3 0|0:0:-0.07,-0.8,-4.22 0|0:0:-0.09,-0.75,-2.98 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.01,-1.94,-5 22 50745281 rs116705979 T C 100 PASS RSQ=0.9089;AA=T;AN=2184;VT=SNP;AC=23;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9978;LDAF=0.0111;ERATE=0.0006;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.04,-1.02,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.67,-5 22 50745454 rs142137592 T C 100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.0265;SNPSOURCE=LOWCOV;AC=50;ERATE=0.0012;AVGPOST=0.9899;RSQ=0.8522;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.08;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-5 22 50745456 . C CA 361 PASS AC=47;AVGPOST=0.9957;RSQ=0.9141;AN=2184;VT=INDEL;ERATE=0.0008;LDAF=0.0231;THETA=0.0007;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-0.9,-11.1 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50745495 rs188680746 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9964;LDAF=0.0023;SNPSOURCE=LOWCOV;RSQ=0.3927;AC=2;ERATE=0.0007;THETA=0.0003;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.2,-0.44,-2.08 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.41 0|0:0:-0.19,-0.46,-2.97 22 50745751 rs142227764 C T 100 PASS AA=C;AN=2184;ERATE=0.0031;VT=SNP;RSQ=0.6214;SNPSOURCE=LOWCOV;AC=71;THETA=0.0007;AVGPOST=0.9583;LDAF=0.0479;AF=0.03;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.12,-0.62,-4 0|0:0:-0.41,-0.45,-0.59 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50745818 rs180707843 G A 100 PASS ERATE=0.0013;RSQ=0.7889;AA=G;AN=2184;AC=40;THETA=0.0005;AVGPOST=0.9894;VT=SNP;LDAF=0.0231;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.02;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50745832 rs185283047 G T 100 PASS AA=G;AN=2184;LDAF=0.0595;AC=65;THETA=0.0005;ERATE=0.0032;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.4495;AVGPOST=0.9202;AF=0.03;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.07;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50745902 rs151210496 G A 100 PASS LDAF=0.437;AC=946;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9005;SNPSOURCE=LOWCOV;RSQ=0.8383;ERATE=0.0071;AF=0.43;ASN_AF=0.4;AMR_AF=0.44;AFR_AF=0.46;EUR_AF=0.44 GT:DS:GL 0|1:1:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 1|1:1.9:-0.48,-0.48,-0.48 0|1:1:-0.48,-0.48,-0.48 1|1:1.9:-0.48,-0.48,-0.48 22 50746191 rs191226173 G A 100 PASS RSQ=0.4107;AA=G;AN=2184;THETA=0.006;ERATE=0.0068;LDAF=0.0686;VT=SNP;AC=78;AVGPOST=0.9032;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.06;EUR_AF=0.03 GT:DS:GL 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.29,-0.43,-0.93 0|0:0.05:-0.31,-0.43,-0.86 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.18,-0.47,-3.04 22 50746317 rs183795520 A G 100 PASS ERATE=0.0152;AA=G;AN=2184;AVGPOST=0.8379;RSQ=0.7502;VT=SNP;AC=1029;THETA=0.0012;LDAF=0.4636;SNPSOURCE=LOWCOV;AF=0.47;ASN_AF=0.46;AMR_AF=0.42;AFR_AF=0.57;EUR_AF=0.44 GT:DS:GL 0|1:0.9:-0.48,-0.48,-0.48 1|0:0.6:-0.48,-0.48,-0.48 1|1:1.75:-0.48,-0.48,-0.48 1|1:1.7:-3,-0.48,-0.18 1|1:1.75:-3.52,-0.47,-0.18 22 50746377 rs187615736 G T 100 PASS AC=12;RSQ=0.3723;AA=G;AN=2184;VT=SNP;ERATE=0.0019;LDAF=0.0122;SNPSOURCE=LOWCOV;AVGPOST=0.9801;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0.1:-0.12,-0.63,-4.4 0|0:0:-0.42,-0.45,-0.57 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.22 0|0:0.1:-0.19,-0.46,-2.96 22 50746386 rs140446167 G A 100 PASS AA=G;AN=2184;AC=20;VT=SNP;RSQ=0.4024;LDAF=0.0196;SNPSOURCE=LOWCOV;ERATE=0.0028;THETA=0.0003;AVGPOST=0.969;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.07,-0.82,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.16,-0.51,-2.87 0|0:0.05:-0.17,-0.49,-3.42 22 50746403 rs150415711 T G 100 PASS THETA=0.0002;AA=G;AN=2184;ERATE=0.0054;VT=SNP;LDAF=0.5161;RSQ=0.9216;AVGPOST=0.9495;AC=1143;SNPSOURCE=LOWCOV;AF=0.52;ASN_AF=0.47;AMR_AF=0.48;AFR_AF=0.68;EUR_AF=0.48 GT:DS:GL 0|1:1:-0.78,-0.08,-2.3 1|0:1:-2.73,-0.46,-0.18 1|1:1.95:-0.48,-0.48,-0.48 0|1:1:-2.63,-0.01,-1.61 1|1:2:-5,-1.02,-0.04 22 50746493 rs138208167 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.8933;AVGPOST=0.9962;AC=26;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0129;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.12,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.27,-0.44,-1.03 0|0:0:-0.02,-1.45,-5 0|0:0:-0.07,-0.82,-5 22 50746554 rs141316357 G A 100 PASS 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0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.06,-0.92,-5 0|0:0:-0.06,-0.88,-5 22 50749031 rs192782738 G A 100 PASS ERATE=0.0004;RSQ=0.5421;AA=G;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.12,-0.61,-3.85 0|0:0:-0.06,-0.92,-5 0|0:0:-0.02,-1.36,-5 22 50749153 rs113848466 T C 100 PASS RSQ=0.9219;AA=C;ERATE=0.0042;AN=2184;AC=1024;VT=SNP;AVGPOST=0.9465;LDAF=0.4619;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.47;ASN_AF=0.35;AMR_AF=0.47;AFR_AF=0.67;EUR_AF=0.43 GT:DS:GL 0|1:1.05:-4.7,-0.64,-0.11 1|0:1:-0.44,-0.46,-0.54 1|1:1.9:-0.48,-0.48,-0.48 0|0:0.25:-0.16,-0.51,-2.6 1|0:1.35:-3.13,-0.45,-0.19 22 50749197 rs62241223 C T 100 PASS LDAF=0.3961;AA=C;AN=2184;AVGPOST=0.9944;RSQ=0.9899;VT=SNP;THETA=0.0006;AC=869;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.4;ASN_AF=0.34;AMR_AF=0.43;AFR_AF=0.4;EUR_AF=0.43 GT:DS:GL 0|1:1:-2.36,-0.01,-1.72 1|0:0.95:-1.2,-0.03,-4 1|1:1.9:-1.84,-0.04,-1.15 0|1:1:-0.18,-0.48,-2.17 1|1:2:-5,-0.71,-0.1 22 50749352 rs62241225 A G 100 PASS AN=2184;ERATE=0.0044;THETA=0.0008;VT=SNP;AVGPOST=0.9548;LDAF=0.5139;RSQ=0.9332;SNPSOURCE=LOWCOV;AC=1136;AA=a;AF=0.52;ASN_AF=0.47;AMR_AF=0.48;AFR_AF=0.72;EUR_AF=0.45 GT:DS:GL 0|1:1:-5,0,-5 1|0:0.75:-0.48,-0.48,-0.48 1|1:2:-0.48,-0.48,-0.48 0|1:0.85:-0.18,-0.48,-2.18 1|1:1.95:-3.52,-0.47,-0.18 22 50749404 rs185414127 C T 100 PASS AC=7;ERATE=0.0004;AA=C;AN=2184;VT=SNP;LDAF=0.0038;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9987;RSQ=0.8877;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.13,-0.6,-3.13 0|0:0:-0.12,-0.63,-2.36 0|0:0:-0.06,-0.89,-5 0|0:0:-0.03,-1.15,-5 22 50749553 rs190712415 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;RSQ=0.6671;VT=SNP;THETA=0.0006;AVGPOST=0.9988;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.83,-5 0|0:0:-0.06,-0.88,-5 22 50749558 rs142677089 C T 100 PASS LDAF=0.0041;AA=C;AVGPOST=0.9994;AN=2184;THETA=0.0005;VT=SNP;AC=9;RSQ=0.9515;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.21,-0.41,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-2.42,-5 0|0:0:-0.06,-0.87,-5 22 50749807 rs191959835 G T 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6624;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.01,-1.73,-5 0|0:0:-0.06,-0.89,-5 0|0:0.05:-0.06,-0.91,-5 22 50749812 rs184561221 G T 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6432;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.01,-1.76,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.06,-0.91,-5 22 50749972 rs146556146 C A 100 PASS ERATE=0.0004;RSQ=0.6391;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.3,-5 0|0:0:-0.23,-0.45,-1.25 0|0:0:-0.11,-0.64,-3.25 0|0:0:-0.04,-1.07,-5 0|0:0:-0.03,-1.19,-5 22 50750045 rs141191561 G T 100 PASS ERATE=0.0004;THETA=0.0014;AA=g;AN=2184;RSQ=0.9518;VT=SNP;AC=9;LDAF=0.0044;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.5,-5 0|0:0:-0,-2.03,-5 0|0:0.05:-0.57,-0.14,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.35,-5 22 50750073 rs145063833 A C 100 PASS ERATE=0.0004;RSQ=0.6552;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9976;LDAF=0.0026;SNPSOURCE=LOWCOV;AC=4;AA=a;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.09,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.01,-1.67,-5 22 50750080 rs115919881 C T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=c;AC=14;AVGPOST=0.9989;RSQ=0.9378;SNPSOURCE=LOWCOV;LDAF=0.0069;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.92,-5 22 50750140 rs189241226 G A 100 PASS ERATE=0.0005;LDAF=0.0021;AA=g;AN=2184;VT=SNP;RSQ=0.6036;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AVGPOST=0.9974;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0.07,-0.84,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.02,-1.37,-5 22 50750153 rs116182426 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9307;AC=14;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.007;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.15,-0.53,-3.24 0|0:0.05:-0.2,-0.48,-1.46 0|0:0:-0.1,-0.7,-4.4 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0.09,-0.71,-5 22 50750218 rs34244788 G C 100 PASS ERATE=0.0005;AA=g;AN=2184;VT=SNP;AC=189;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.9933;LDAF=0.0869;AF=0.09;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.28;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.83,-5 0|0:0:-0.1,-0.69,-5 22 50750242 rs181277120 C T 100 PASS ERATE=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AA=c;THETA=0.0028;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=2;RSQ=0.6386;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.04,-1.09,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.83,-5 0|0:0:-0.07,-0.81,-5 22 50750243 rs186696378 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;AC=8;THETA=0.0005;VT=SNP;RSQ=0.6821;AVGPOST=0.9959;SNPSOURCE=LOWCOV;LDAF=0.0051;AF=0.0037;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.06,-0.87,-5 0|0:0:-0.06,-0.87,-5 22 50750363 rs74328098 G C 100 PASS AA=g;AN=2184;AVGPOST=0.9975;RSQ=0.9584;VT=SNP;SNPSOURCE=LOWCOV;AC=50;ERATE=0.0006;LDAF=0.0225;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.62,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.02,-1.45,-5 22 50750461 rs146804745 G A 100 PASS AA=g;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;AVGPOST=0.9989;RSQ=0.5201;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.47,-5 22 50750481 rs11553142 C T 100 PASS ERATE=0.0005;AVGPOST=0.9902;AN=2184;AC=45;LDAF=0.0233;RSQ=0.8364;VT=SNP;AA=c;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.02;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.96,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-4.22,-5 22 50750500 rs115126200 C T 100 PASS AC=17;ERATE=0.0004;RSQ=0.9678;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;THETA=0.0051;AVGPOST=0.9995;LDAF=0.008;AF=0.01;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.82,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.12,-0.62,-2.28 0|0:0:-0,-3.85,-5 0|0:0:-0,-4.4,-5 22 50750529 . C G 100 PASS AN=2184;VT=SNP;RSQ=0.5436;AA=c;SNPSOURCE=EXOME;AC=1;THETA=0.0013;ERATE=0.0006;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.35,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 22 50750573 . G A 100 PASS RSQ=0.9405;THETA=0.0032;AA=g;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50750606 rs140552754 G A 100 PASS AVGPOST=1;LDAF=0.0009;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50750720 . G A 100 PASS THETA=0.0009;AA=g;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0,-4,-5 0|0:0:-0,-3.14,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.76,-5 22 50750788 . T C 100 PASS THETA=0.0009;AN=2184;RSQ=0.6677;VT=SNP;SNPSOURCE=EXOME;AVGPOST=0.9988;ERATE=0.0003;LDAF=0.0012;AC=3;AA=t;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50750805 . G A 100 PASS AA=g;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50750835 rs117291362 G A 100 PASS THETA=0.0009;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.996;AC=80;AVGPOST=0.9997;VT=SNP;LDAF=0.0366;ERATE=0.0003;AF=0.04;ASN_AF=0.11;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50750879 rs73439304 G A 100 PASS ERATE=0.0004;RSQ=0.9963;LDAF=0.0864;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.003;AC=189;AF=0.09;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.28;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.07,-5 0|0:0:-0,-2.9,-5 22 50751078 rs138263292 G A 100 PASS ERATE=0.0004;RSQ=0.9739;AA=g;THETA=0.0004;AN=2184;AC=55;AVGPOST=0.9981;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0259;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0.23,-0.41,-1.58 0|0:0:-0,-2.54,-5 0|0:0:-0.14,-0.57,-2.02 0|0:0:-0.16,-0.51,-2.59 0|0:0.05:-0.1,-0.67,-5 22 50751486 . C T 100 PASS AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;AA=c;LDAF=0.0007;SNPSOURCE=EXOME;RSQ=0.7117;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.11,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.08,-5 22 50751529 rs67248662 G C 100 PASS THETA=0.0032;AA=g;LDAF=0.2835;SNPSOURCE=LOWCOV,EXOME;AN=2184;ERATE=0.0009;VT=SNP;AC=622;RSQ=0.9833;AVGPOST=0.9911;AF=0.28;ASN_AF=0.27;AMR_AF=0.28;AFR_AF=0.26;EUR_AF=0.31 GT:DS:GL 0|1:1:-5,-0,-4.7 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|0:0:-0.01,-1.62,-5 1|0:1:-5,-0,-3.74 22 50751547 . GA G 289 PASS ERATE=0.0004;RSQ=0.9076;AN=2184;AVGPOST=0.9952;VT=INDEL;AC=44;LDAF=0.0213;THETA=0.0024;AF=0.02;AMR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-1.5,-22.3 0|0:0:0,0,0 0|0:0:0,0,0 0|1:1:0,0,0 0|1:1:0,0,0 22 50751558 . C T 100 PASS ERATE=0.0004;RSQ=0.5951;AN=2184;VT=SNP;AVGPOST=0.9993;AA=c;THETA=0.0037;SNPSOURCE=EXOME;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.7,-5 22 50751563 . C T 100 PASS ERATE=0.0004;AVGPOST=0.9986;AN=2184;VT=SNP;AA=c;RSQ=0.4754;SNPSOURCE=EXOME;LDAF=0.0011;AC=1;THETA=0.0013;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.25,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.92,-5 22 50751594 rs189121341 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;RSQ=0.8262;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.02,-1.39,-5 22 50751678 rs73439306 C T 100 PASS RSQ=0.9731;AA=C;AN=2184;ERATE=0.0009;VT=SNP;LDAF=0.0664;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AC=142;THETA=0.0007;AF=0.07;AMR_AF=0.01;AFR_AF=0.26;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.82,-5 22 50751683 rs146896278 G C 100 PASS AC=7;ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0008;VT=SNP;LDAF=0.0034;RSQ=0.9545;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.76,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-3.4,-5 22 50751791 . C CT 316 PASS AC=184;RSQ=0.9408;AVGPOST=0.9864;AN=2184;VT=INDEL;THETA=0.0005;ERATE=0.001;LDAF=0.0879;AF=0.08;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.27;EUR_AF=0.03 GT:DS:GL 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50751884 rs180969906 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5953;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-2.43,-5 22 50752024 . C T 100 PASS AA=C;ERATE=0.0057;LDAF=0.0561;AN=2184;VT=SNP;AVGPOST=0.9171;SNPSOURCE=EXOME;AC=64;RSQ=0.3985;THETA=0.0024;AF=0.03;ASN_AF=0.04;AMR_AF=0.04;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.46,-2.79 0|0:0:-0.21,-0.46,-1.36 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.15,-5 0|0:0:-0.48,-0.48,-0.48 22 50752105 . G A 100 PASS RSQ=0.5509;AA=G;AN=2184;THETA=0.0031;AVGPOST=0.9952;LDAF=0.004;AC=6;VT=SNP;ERATE=0.0008;SNPSOURCE=EXOME;AF=0.0027;ASN_AF=0.01;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.15,-0.54,-1.92 0|0:0:-0.03,-1.15,-4.7 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.77,-5 22 50752133 rs137921722 C T 100 PASS ERATE=0.0004;THETA=0.0023;AA=C;AVGPOST=0.9943;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8565;AC=29;VT=SNP;LDAF=0.0155;AF=0.01;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.45,-5 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.67,-5 0|0:0.3:-0.01,-1.5,-5 0|1:1:-5,0,-5 22 50752150 rs68178377 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=548;RSQ=0.9588;VT=SNP;LDAF=0.2519;ERATE=0.004;AVGPOST=0.9781;THETA=0.0003;AF=0.25;ASN_AF=0.2;AMR_AF=0.28;AFR_AF=0.21;EUR_AF=0.3 GT:DS:GL 0|0:0:-0,-2.06,-5 1|0:1:-5,0,-5 1|1:2:-5,-2.12,-0 0|0:0:-0,-2.27,-5 1|0:1:-5,0,-5 22 50752169 rs73891220 G A 100 PASS RSQ=0.9089;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.0256;AVGPOST=0.9481;LDAF=0.315;AC=666;AF=0.3;ASN_AF=0.28;AMR_AF=0.32;AFR_AF=0.27;EUR_AF=0.34 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0.14,-0.55 1|1:2:-5,-3.85,-0 0|0:0:-0.01,-1.86,-5 1|0:1:-5,0,-5 22 50752185 . C T 100 PASS AC=7;ERATE=0.0004;RSQ=0.8872;AA=C;AN=2184;VT=SNP;LDAF=0.0038;SNPSOURCE=EXOME;AVGPOST=0.9987;THETA=0.0003;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-4.7,-5 22 50752213 rs115390758 T C 100 PASS AC=30;RSQ=0.8657;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;ERATE=0.0019;THETA=0.0007;LDAF=0.0163;AVGPOST=0.9949;AF=0.01;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.04,-1.02,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.14,-0.55,-5 0|0:0:-0,-3.04,-5 22 50752234 . A C 100 PASS THETA=0.005;LDAF=0.0013;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;AC=1;RSQ=0.4701;AVGPOST=0.9984;ERATE=0.0007;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.08,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.54,-5 0|0:0:0,-5,-5 22 50752258 rs115446109 G A 100 PASS THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9789;VT=SNP;AC=32;LDAF=0.015;ERATE=0.0003;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.25,-5 0|0:0:0,-5,-5 22 50752297 . G A 100 PASS AA=G;AN=2184;AC=6;AVGPOST=0.999;VT=SNP;LDAF=0.0026;THETA=0.0006;SNPSOURCE=EXOME;ERATE=0.0003;RSQ=0.8536;AF=0.0027;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.61,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50752330 rs187080634 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=3;RSQ=0.6583;AVGPOST=0.9982;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.98,-5 0|0:0:-0.07,-0.81,-3.44 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0,-2.42,-5 0|0:0:-0,-4.22,-5 22 50752389 rs143376365 G A 100 PASS ERATE=0.0005;RSQ=0.5106;LDAF=0.0021;AA=G;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-3.4,-5 0|0:0:-0.12,-0.62,-2.38 0|0:0.1:-0.01,-1.55,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.29,-5 22 50752602 rs190906774 G A 100 PASS ERATE=0.0004;RSQ=0.4249;LDAF=0.0013;AA=G;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9982;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.99,-5 0|0:0:0,-5,-5 22 50752705 rs144775109 C T 100 PASS THETA=0.0009;LDAF=0.0027;ERATE=0.0014;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.7461;AC=4;AVGPOST=0.9984;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50752769 rs117100828 C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9687;AC=147;RSQ=0.8446;ERATE=0.0116;SNPSOURCE=LOWCOV;LDAF=0.0783;AF=0.07;ASN_AF=0.12;AMR_AF=0.12;AFR_AF=0.04;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.04,-5 0|0:0:-0.02,-1.46,-5 0|0:0.15:-0.86,-0.06,-4.7 0|0:0:-0,-3.3,-5 0|0:0:-0,-2.81,-5 22 50752784 rs140447345 C T 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;AC=9;RSQ=0.8299;LDAF=0.0044;THETA=0.0052;AVGPOST=0.9978;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-2.77,-5 0|0:0:-0,-3.15,-5 22 50752848 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-3.7,-5 22 50752935 . G T 100 PASS AVGPOST=1;AA=G;AN=2184;RSQ=0;THETA=0.0008;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.38,-5 0|0:0:-0,-3.92,-5 22 50752968 rs73439310 G A 100 PASS ERATE=0.0004;LDAF=0.0298;THETA=0.0032;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9927;AC=65;VT=SNP;AF=0.03;AMR_AF=0.01;AFR_AF=0.13 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.28,-5 0|0:0:-0,-2.3,-5 22 50753025 . G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.7622;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.07,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.19,-5 0|0:0:-0,-2.44,-5 22 50753069 rs141200251 G A 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0007;RSQ=0.7141;AC=1;THETA=0.0058;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.45,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.11,-5 0|0:0:-0,-1.96,-5 22 50753184 rs150781477 G A 100 PASS AC=7;LDAF=0.0041;AVGPOST=0.9977;RSQ=0.7772;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.0008;THETA=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-3.28,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-2.27,-5 22 50753222 rs139137024 C T 100 PASS AA=C;LDAF=0.0016;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.7241;THETA=0.0003;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.05,-0.97,-4.1 0|0:0:-0,-2.9,-5 0|0:0:-0,-2.56,-5 22 50753260 . G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=EXOME;AC=1;RSQ=0.5771;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.64,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-2.55,-5 0|0:0:-0,-2.3,-5 22 50753262 . C T 100 PASS RSQ=0.7227;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.72,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-3.34,-5 0|0:0:-0,-2.77,-5 0|0:0:-0,-2.28,-5 22 50753263 rs113856947 G A 100 PASS AC=12;THETA=0.0021;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9381;LDAF=0.0057;VT=SNP;ERATE=0.0003;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.73,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-3.13,-5 0|0:0:-0,-2.28,-5 22 50753290 . C T 100 PASS AA=C;RSQ=0.876;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-4,-5 22 50753334 rs73439311 G A 100 PASS LDAF=0.3443;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=753;THETA=0.0008;VT=SNP;ERATE=0.0019;RSQ=0.9941;AVGPOST=0.9965;AF=0.34;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.3;EUR_AF=0.39 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|1:2:-5,-5,0 0|0:0:-0,-3.8,-5 1|0:1:-5,0,-5 22 50753342 . C T 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=C;AN=2184;RSQ=0.5234;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;LDAF=0.0012;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50753473 rs146507583 G A 100 PASS LDAF=0.0009;AA=G;AN=2184;RSQ=0.8322;AVGPOST=0.9996;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-3.1,-5 0|0:0:-0,-3.03,-5 0|0:0:-0,-2.39,-5 0|0:0:-0,-2.52,-5 0|0:0:-0,-3.55,-5 22 50753497 rs140030244 T C 100 PASS AA=T;AN=2184;AVGPOST=0.9997;LDAF=0.0018;VT=SNP;RSQ=0.9344;SNPSOURCE=LOWCOV;AC=4;THETA=0.001;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.87,-5 0|0:0:-0,-2.3,-5 0|0:0:-0.03,-1.11,-4.7 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.81,-5 22 50753592 rs143539072 G A 100 PASS ERATE=0.0005;AVGPOST=0.9983;LDAF=0.0035;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7909;THETA=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.13,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0.01,-1.69,-5 0|0:0:-0.02,-1.44,-5 22 50753626 rs114884422 G A 100 PASS ERATE=0.0004;LDAF=0.0024;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.6652;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.66,-5 0|0:0:-0.06,-0.91,-5 22 50753676 rs35759545 C T 100 PASS THETA=0.0009;ERATE=0.0004;AA=C;AVGPOST=0.9946;AN=2184;AC=683;LDAF=0.3122;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9903;AF=0.31;ASN_AF=0.3;AMR_AF=0.32;AFR_AF=0.26;EUR_AF=0.36 GT:DS:GL 0|1:1:-1.21,-0.03,-5 1|0:1:-0.21,-0.46,-1.35 1|1:1.95:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.13,-5 1|0:1:-3.19,-0.22,-0.41 22 50753728 rs62241227 C T 100 PASS LDAF=0.0298;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9981;AC=65;VT=SNP;RSQ=0.9717;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.03;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.19,-0.46,-2.27 0|0:0:-0.34,-0.44,-0.75 0|0:0:-0.19,-0.46,-2.01 0|0:0:-0.1,-0.67,-5 22 50753751 rs148963936 C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.4959;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.08,-0.78,-4 0|0:0:-0.03,-1.15,-5 0|0:0:-0.1,-0.68,-5 22 50753755 rs76684576 C G 100 PASS AA=C;AN=2184;VT=SNP;AC=10;THETA=0.0006;AVGPOST=0.9989;LDAF=0.0049;RSQ=0.903;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.09,-0.72,-3.66 0|0:0:-0.02,-1.4,-5 0|0:0:-0.1,-0.67,-5 22 50753817 rs143698089 G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6229;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.04,-1.1,-5 22 50753945 rs76393084 G C 100 PASS AA=G;AN=2184;AC=40;RSQ=0.9953;VT=SNP;AVGPOST=0.9998;LDAF=0.0183;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;AF=0.02;ASN_AF=0.06;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-2.22,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-2.17,-5 22 50753973 rs62241228 T C 100 PASS AVGPOST=0.9977;THETA=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.3181;SNPSOURCE=LOWCOV;RSQ=0.9955;AC=694;ERATE=0.0007;AF=0.32;ASN_AF=0.3;AMR_AF=0.33;AFR_AF=0.27;EUR_AF=0.36 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0.11,-0.65 1|1:2:-5,-0.42,-0.21 0|0:0:-0,-2.39,-5 1|0:1:-5,-0,-3.15 22 50754052 rs71964200 TACTC T 1792 PASS AN=2184;VT=INDEL;ERATE=0.0026;AVGPOST=0.9919;AC=689;THETA=0.0007;LDAF=0.3142;RSQ=0.985;AF=0.32;ASN_AF=0.29;AMR_AF=0.33;AFR_AF=0.27;EUR_AF=0.35 GT:DS:GL 0|1:1:-15.9,0,-14.9 1|0:1:0,-0.3,-8.2 1|1:2:-8.9,-0.6,0 0|0:0:0,-0.3,-8.2 1|0:1:0,-0.3,-4 22 50754074 rs73439313 T C 100 PASS AN=2184;THETA=0.0008;VT=SNP;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9908;AVGPOST=0.9995;AA=t;LDAF=0.0198;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-2.59,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.24,-5 0|0:0:-0,-1.97,-5 22 50754079 rs114019182 G A 100 PASS ERATE=0.0004;RSQ=0.9289;LDAF=0.0042;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;AC=9;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0041;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.27,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.49,-5 0|0:0:-0,-2.21,-5 22 50754159 . C T 100 PASS RSQ=0.604;AA=C;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0006;AVGPOST=0.9989;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.89,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 22 50754170 rs141024652 G A 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.38,-5 0|0:0:-0,-4.7,-5 22 50754200 rs35683648 TGA T 2 PASS AC=94;AN=2184;VT=INDEL;THETA=0.0006;LDAF=0.0433;RSQ=0.9317;ERATE=0.0006;AVGPOST=0.992;AF=0.04;AMR_AF=0.01;AFR_AF=0.18 GT:DS:GL 0|0:0:0,-0.9,-16.5 0|0:0:0,-0.3,-5.5 0|0:0:0,0,0 0|0:0:0,-0.6,-11 0|0:0:0,0,0 22 50754202 . AGAG A 430 PASS ERATE=0.0005;RSQ=0.9773;AN=2184;VT=INDEL;AC=133;THETA=0.0008;LDAF=0.0613;AVGPOST=0.9965;AF=0.06;AMR_AF=0.02;AFR_AF=0.23;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.9,-19.7 0|0:0:0,-0.3,-6.6 0|0:0:0,0,0 0|0:0:0,-0.6,-13.1 0|0:0.05:0,0,0 22 50754203 rs76130496 G C 100 PASS AC=12;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0054;RSQ=0.9674;VT=SNP;AVGPOST=0.9993;ERATE=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.98,-5 0|0:0:-0,-3.92,-5 22 50754286 rs78076701 G A 100 PASS ERATE=0.0004;THETA=0.0004;LDAF=0.0202;AA=G;AN=2184;VT=SNP;RSQ=0.9507;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=42;AF=0.02;AMR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.78,-5 0|0:0:-0,-4.4,-5 0|1:1:-5,0,-5 0|1:1:-5,0,-5 22 50754321 rs185849337 C A 100 PASS AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;ERATE=0.0003;RSQ=0.7921;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.65,-5 0|0:0:-0.01,-1.67,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50754363 rs35812349 A G 100 PASS ERATE=0.0005;AC=985;AA=G;AN=2184;AVGPOST=0.9979;LDAF=0.4508;VT=SNP;RSQ=0.9965;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.45;ASN_AF=0.42;AMR_AF=0.39;AFR_AF=0.58;EUR_AF=0.42 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0,-3.4 1|1:2:-5,-2.62,-0 0|0:0:0,-5,-5 1|0:1:-5,0,-5 22 50754416 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;RSQ=0.819;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.08,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50754445 rs80243206 A T 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9944;VT=SNP;AA=A;AC=41;AVGPOST=0.9998;LDAF=0.0189;THETA=0.0012;ERATE=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50754466 rs62241230 C T 100 PASS LDAF=0.2992;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9987;VT=SNP;AVGPOST=0.9993;ERATE=0.0003;AC=655;AF=0.3;ASN_AF=0.27;AMR_AF=0.31;AFR_AF=0.27;EUR_AF=0.34 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|1:2:-5,-5,0 0|0:0:0,-5,-5 1|0:1:-5,0,-5 22 50754512 rs11553143 C T 100 PASS AA=C;AC=120;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.055;THETA=0.0005;AVGPOST=0.9996;VT=SNP;ERATE=0.0003;AF=0.05;ASN_AF=0.11;AMR_AF=0.03;AFR_AF=0.07;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50754519 . G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50754648 rs11553141 T C 100 PASS AC=987;ERATE=0.0004;AA=C;LDAF=0.4519;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9954;VT=SNP;THETA=0.0006;AVGPOST=0.997;AF=0.45;ASN_AF=0.42;AMR_AF=0.39;AFR_AF=0.58;EUR_AF=0.42 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0,-2.35 1|1:2:-5,-4,-0 0|0:0:0,-5,-5 1|0:1:-5,0,-5 22 50754649 . G A 100 PASS RSQ=0.5302;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9979;LDAF=0.0018;VT=SNP;ERATE=0.0016;SNPSOURCE=EXOME;AC=2;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.22,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50754700 . C T 100 PASS ERATE=0.0005;AN=2184;VT=SNP;AA=c;RSQ=0.6228;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;THETA=0.0007;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.9,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 22 50754772 rs73439316 C T 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9954;VT=SNP;THETA=0.0011;AA=c;LDAF=0.0768;AC=168;AVGPOST=0.9992;AF=0.08;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.23;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-3.44,-5 22 50754774 . A C 100 PASS THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AC=1;AA=a;ERATE=0.0003;RSQ=0.6494;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.93,-5 0|0:0:-0,-2.57,-5 0|0:0:-0,-3.49,-5 22 50754836 rs146906468 G A 100 PASS ERATE=0.0004;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;LDAF=0.0014;AC=3;RSQ=0.7986;AF=0.0014;ASN_AF=0.0035;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.66,-5 22 50754874 . C G 100 PASS AVGPOST=1;AN=2184;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-3.24,-5 22 50755012 rs139295151 T C 100 PASS RSQ=0.9632;LDAF=0.0047;AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;AC=10;SNPSOURCE=LOWCOV;ERATE=0.0003;AA=t;AF=0.0046;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.12,-5 0|0:0:-0,-2.22,-5 0|0:0:-0,-2.36,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.01,-1.61,-5 22 50755054 rs190608174 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;RSQ=0.6122;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.84,-5 0|0:0:-0,-2.5,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.02,-1.36,-5 22 50755109 rs141303849 T C 100 PASS ERATE=0.0004;AN=2184;VT=SNP;THETA=0.0018;AC=24;SNPSOURCE=LOWCOV;AVGPOST=0.9968;RSQ=0.8831;AA=t;LDAF=0.0114;AF=0.01;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-3.28,-5 22 50755280 rs73439317 G A 100 PASS ERATE=0.0004;AVGPOST=0.9963;AA=g;THETA=0.0004;AN=2184;LDAF=0.0329;VT=SNP;AC=70;RSQ=0.957;SNPSOURCE=LOWCOV;AF=0.03;AMR_AF=0.01;AFR_AF=0.13 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.06,-0.9,-5 22 50755399 rs182475008 G A 100 PASS AVGPOST=0.7782;AC=273;THETA=0.0002;AN=2184;RSQ=0.4174;VT=SNP;AA=-;ERATE=0.0083;SNPSOURCE=LOWCOV;LDAF=0.1844;AF=0.12;ASN_AF=0.13;AMR_AF=0.14;AFR_AF=0.15;EUR_AF=0.1 GT:DS:GL 0|0:0.4:-0.48,-0.48,-0.48 0|0:0.3:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 0|0:0.3:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50755552 rs188315175 G A 100 PASS THETA=0.0004;AN=2184;AC=185;AVGPOST=0.9869;VT=SNP;ERATE=0.001;AA=A;RSQ=0.9344;SNPSOURCE=LOWCOV;LDAF=0.0865;AF=0.08;ASN_AF=0.03;AMR_AF=0.04;AFR_AF=0.25;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.11,-0.66,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.2,-0.44,-2.61 22 50755782 rs145811594 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.8517;AC=11;ERATE=0.0006;LDAF=0.005;AVGPOST=0.9982;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50755794 rs192204156 C G 100 PASS AA=C;THETA=0.0004;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50755840 . C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.7933;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50755907 rs73439318 G C 100 PASS ERATE=0.0004;AA=C;AC=169;THETA=0.0004;LDAF=0.0773;AN=2184;RSQ=0.996;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AF=0.08;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.24;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.31,-5 0|0:0:-0,-2.38,-5 0|0:0:0,-5,-5 22 50755960 rs80042432 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;RSQ=0.9359;AC=33;SNPSOURCE=LOWCOV;THETA=0.0013;LDAF=0.0155;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.26,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.09,-0.71,-3.62 0|0:0:-0,-2.82,-5 0|0:0:-0,-3.66,-5 22 50756026 rs74933135 G A 100 PASS ERATE=0.0004;AVGPOST=0.9983;AC=48;AA=G;AN=2184;RSQ=0.9674;VT=SNP;LDAF=0.0223;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.02;ASN_AF=0.01;AMR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.08,-0.79,-4 0|0:0:-0.02,-1.38,-5 0|0:0:-0.03,-1.15,-5 22 50756048 rs78060754 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AC=243;VT=SNP;LDAF=0.1111;SNPSOURCE=LOWCOV;AVGPOST=0.9941;ERATE=0.0007;RSQ=0.9756;AF=0.11;ASN_AF=0.2;AMR_AF=0.14;AFR_AF=0.01;EUR_AF=0.1 GT:DS:GL 0|0:0.05:-0.14,-0.57,-5 0|0:0:-0.22,-0.46,-1.34 0|1:1.05:-5,-0.73,-0.09 0|0:0:-0.05,-0.96,-5 0|0:0.05:-0.06,-0.89,-5 22 50756119 rs182856416 A G 100 PASS ERATE=0.0005;LDAF=0.0021;THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.5686;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0.07,-0.81,-3.44 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.01,-1.68,-5 0|0:0:-0.03,-1.15,-5 22 50756320 rs116951534 C T 100 PASS ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;THETA=0.0005;VT=SNP;RSQ=0.8446;AVGPOST=0.9987;LDAF=0.0031;AF=0.0027;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50756388 . G A 100 PASS AA=G;AN=2184;THETA=0.0001;VT=SNP;LDAF=0.0001;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.0499;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50756413 . C A 100 PASS AA=C;AN=2184;RSQ=0.0497;AVGPOST=0.9997;VT=SNP;LDAF=0.0001;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50756452 rs73439320 A G 100 PASS AC=169;THETA=0.0004;LDAF=0.0773;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9981;ERATE=0.0003;AF=0.08;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.24;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-3.09,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 22 50756486 . G A 100 PASS LDAF=0.0009;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.5624;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0,-3.11,-5 0|0:0:-0,-3.12,-5 22 50756827 rs188608308 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6848;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.4,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.11,-0.67,-3.92 0|0:0:-0.01,-1.66,-5 22 50756881 rs149279162 G A 100 PASS ERATE=0.0004;LDAF=0.0009;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6674;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0,-3.13,-5 22 50756897 rs144482196 T G 100 PASS AA=T;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.6277;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.67,-0.1,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-3.52,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0,-3.92,-5 22 50756948 rs192497179 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5274;AVGPOST=0.9993;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.91,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.07,-0.84,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0,-2.38,-5 22 50757059 rs148038563 A G 100 PASS AC=7;ERATE=0.0004;AN=2184;VT=SNP;RSQ=0.8898;AA=A;AVGPOST=0.9989;LDAF=0.0038;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.06,-0.86,-3.7 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.65,-5 22 50757112 rs62241231 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AC=1354;SNPSOURCE=LOWCOV;RSQ=0.9974;AVGPOST=0.9987;LDAF=0.6207;THETA=0.0003;AF=0.62;ASN_AF=0.59;AMR_AF=0.66;AFR_AF=0.63;EUR_AF=0.61 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-2.41,-0.1,-0.69 0|0:0.15:-0.22,-0.46,-1.27 1|1:2:-5,-1.24,-0.03 0|1:1:-4.22,-0,-5 22 50757242 rs185110140 C T 100 PASS ERATE=0.0005;LDAF=0.0021;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=4;AVGPOST=0.9995;RSQ=0.8869;THETA=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.39,-5 0|0:0:0,-5,-5 22 50757245 . G C 100 PASS AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=4;RSQ=0.8942;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;LDAF=0.0017;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.38,-5 0|0:0:0,-5,-5 22 50757337 rs116354843 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9852;AC=14;AVGPOST=0.9998;LDAF=0.0065;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50757348 rs62241232 G A 100 PASS AC=1102;LDAF=0.5056;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;RSQ=0.9965;ERATE=0.0011;AF=0.5;ASN_AF=0.52;AMR_AF=0.59;AFR_AF=0.31;EUR_AF=0.58 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 1|1:2:-5,-5,0 0|1:1:-5,0,-5 22 50757365 rs117044665 T C 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;LDAF=0.0375;VT=SNP;AC=82;ERATE=0.0003;RSQ=0.9989;AVGPOST=0.9999;AF=0.04;ASN_AF=0.11;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50757470 rs67488807 T C 100 PASS LDAF=0.4956;AA=C;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=1084;THETA=0.0005;VT=SNP;ERATE=0.0003;RSQ=0.999;AF=0.5;ASN_AF=0.48;AMR_AF=0.41;AFR_AF=0.69;EUR_AF=0.42 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|1:2:-5,-5,0 0|0:0:-0,-2.07,-5 1|0:1:-5,0,-5 22 50757514 rs187453577 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;LDAF=0.0066;AN=2184;AVGPOST=0.9979;RSQ=0.8873;VT=SNP;AC=14;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0017;AMR_AF=0.03;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.79,-5 22 50757541 rs62241233 T C 100 PASS THETA=0.0004;AA=T;AN=2184;LDAF=0.325;RSQ=0.9829;VT=SNP;ERATE=0.002;SNPSOURCE=LOWCOV;AC=712;AVGPOST=0.9899;AF=0.33;ASN_AF=0.33;AMR_AF=0.32;AFR_AF=0.31;EUR_AF=0.33 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-0.13,-0.59,-2.24 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.94,-5 1|0:1:-5,0,-5 22 50757547 rs192305610 G A 100 PASS LDAF=0.0042;AA=G;AN=2184;VT=SNP;AVGPOST=0.9953;AC=5;SNPSOURCE=LOWCOV;RSQ=0.566;ERATE=0.0006;THETA=0.0003;AF=0.0023;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.69,-5 22 50757579 rs146031404 C A 100 PASS ERATE=0.0004;AC=131;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;RSQ=0.9955;LDAF=0.0602;AF=0.06;ASN_AF=0.13;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.05 GT:DS:GL 0|0:0:-0,-3.06,-5 0|0:0:-0,-2.75,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.01,-1.66,-5 22 50757654 rs78477728 C T 100 PASS AC=131;AA=C;AN=2184;RSQ=0.9977;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;LDAF=0.0599;AF=0.06;ASN_AF=0.12;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.05 GT:DS:GL 0|0:0:-0,-3.66,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.69,-5 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.01,-1.88,-5 22 50757680 rs35847018 T C 100 PASS 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RSQ=0.962;LDAF=0.4659;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1027;ERATE=0.0029;AVGPOST=0.9751;AF=0.47;ASN_AF=0.41;AMR_AF=0.41;AFR_AF=0.67;EUR_AF=0.41 GT:DS:GL 0|1:1:-3.11,-0,-5 1|0:1:-0.22,-0.42,-1.83 1|1:2:-0.48,-0.48,-0.48 0|0:0.1:-0.1,-0.69,-4.1 1|0:0.95:-0.48,-0.48,-0.48 22 50767391 rs144682708 C T 100 PASS LDAF=0.0191;AA=C;AN=2184;AC=40;VT=SNP;AVGPOST=0.9969;RSQ=0.9378;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.02;ASN_AF=0.06;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.19,-0.46,-2.01 0|0:0:-0.48,-0.48,-0.48 22 50767407 rs146681239 T C 100 PASS AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9654;ERATE=0.0048;RSQ=0.9519;SNPSOURCE=LOWCOV;LDAF=0.4706;AA=t;AC=1030;AF=0.47;ASN_AF=0.38;AMR_AF=0.39;AFR_AF=0.77;EUR_AF=0.38 GT:DS:GL 0|1:1:-3.66,-0,-5 1|0:1:-0.24,-0.44,-1.16 1|1:1.95:-1.92,-0.19,-0.47 0|0:0:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 22 50767411 rs190187789 T C 100 PASS ERATE=0.0004;RSQ=0.6173;AA=T;AN=2184;VT=SNP;THETA=0.0012;LDAF=0.0014;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0.24,-0.44,-1.16 0|0:0:-0.16,-0.53,-2.49 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50767453 rs140286278 A G 100 PASS RSQ=0.9838;AA=G;AN=2184;VT=SNP;LDAF=0.4702;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9897;AC=1030;THETA=0.0003;AF=0.47;ASN_AF=0.41;AMR_AF=0.41;AFR_AF=0.67;EUR_AF=0.41 GT:DS:GL 0|1:1:-4.1,-0,-5 1|0:1:-1.88,-0.01,-3.21 1|1:2:-0.48,-0.48,-0.48 0|0:0.05:-0.18,-0.48,-2.18 1|0:1:-3.18,-0.49,-0.17 22 50767505 rs143571207 G A 100 PASS AC=7;AA=G;AN=2184;LDAF=0.0037;THETA=0.0005;RSQ=0.8697;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0:-0.24,-0.4,-1.5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50767514 rs181796093 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=G;AN=2184;RSQ=0.5942;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0016;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0.14,-0.56,-3.38 0|0:0:-0.08,-0.79,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.24,-0.41,-1.47 22 50767520 rs148029473 A G 100 PASS RSQ=0.8204;LDAF=0.0071;AN=2184;VT=SNP;AVGPOST=0.9971;AA=A;AC=14;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0006;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.19,-0.46,-2.23 0|0:0:-0.04,-1.01,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.14,-0.56,-3.28 22 50767766 rs141803927 C G 100 PASS AC=17;AA=C;AN=2184;LDAF=0.009;VT=SNP;THETA=0.0006;ERATE=0.0008;RSQ=0.836;SNPSOURCE=LOWCOV;AVGPOST=0.9958;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-1.37,-0.02,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.06,-0.86,-5 22 50767886 rs185605561 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9546;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9999;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-1.96,-5 0|0:0:-0,-2.11,-5 22 50767901 rs188690886 T C 100 PASS AA=T;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.81,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.9,-5 22 50767958 rs180704452 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5796;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.48 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.1,-0.7,-4.22 0|0:0:-0.01,-1.86,-5 22 50767994 rs185279262 A C 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.8923;AA=A;LDAF=0.0014;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.01,-1.59,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.86,-5 22 50768038 rs190973533 T C 100 PASS THETA=0.0009;AA=T;AN=2184;VT=SNP;RSQ=0.5871;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.34,-5 22 50768097 rs150160059 C T 100 PASS AN=2184;AC=8;AVGPOST=0.9997;LDAF=0.0037;VT=SNP;THETA=0.0006;AA=-;SNPSOURCE=LOWCOV;RSQ=0.9652;ERATE=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.08,-0.78,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.04,-1.07,-5 22 50768283 rs139055707 A C 100 PASS AVGPOST=0.9945;LDAF=0.0145;AN=2184;AC=29;VT=SNP;AA=A;SNPSOURCE=LOWCOV;RSQ=0.8449;THETA=0.0007;ERATE=0.0006;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.15 0|0:0:-0.48,-0.48,-0.48 22 50768361 rs142959085 G C 100 PASS RSQ=0.6591;LDAF=0.0016;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.12,-0.63,-3.27 0|0:0:-0.01,-1.78,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.11,-0.64,-4 22 50768444 rs147484412 G A 100 PASS ERATE=0.0004;AA=g;RSQ=0.9608;AN=2184;LDAF=0.0043;AVGPOST=0.9996;VT=SNP;THETA=0.0006;AC=9;SNPSOURCE=LOWCOV;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0,-2.09,-5 0|0:0:-0,-2.97,-5 0|0:0:-0.09,-0.74,-5 0|0:0:-0,-3.92,-5 22 50768456 rs183987468 A G 100 PASS AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.0013;RSQ=0.8654;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.92,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-3.34,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0,-3.42,-5 22 50768794 rs140028960 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9981;VT=SNP;RSQ=0.977;LDAF=0.0321;SNPSOURCE=LOWCOV;AC=69;THETA=0.0007;ERATE=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.13 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.04,-1.11,-5 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.12,-0.63,-3.92 22 50768834 . G GA 300 PASS THETA=0.0004;AN=2184;AVGPOST=0.9294;VT=INDEL;RSQ=0.8175;ERATE=0.0114;LDAF=0.1762;AC=356;AF=0.16;ASN_AF=0.05;AMR_AF=0.16;AFR_AF=0.15;EUR_AF=0.26 GT:DS:GL 0|1:1:-2.7,0,-2 1|0:1.05:-1,0,-2 1|0:0.95:0,0,-2.1 0|0:0:0,-0.3,-2.6 1|0:1:0,-0.3,-2.6 22 50768939 rs144356196 A G 100 PASS AC=232;AN=2184;VT=SNP;AA=A;LDAF=0.1079;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9931;THETA=0.0062;RSQ=0.9712;AF=0.11;ASN_AF=0.18;AMR_AF=0.15;AFR_AF=0.0041;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.07,-0.82,-5 0|1:1:-3.38,-0,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.1,-0.7,-4.7 22 50769006 rs187251341 G A 100 PASS LDAF=0.0033;AA=G;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9971;AC=5;RSQ=0.6428;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.32,-0.43,-0.83 0|0:0:-0.18,-0.48,-2.3 0|0:0:-0.03,-1.15,-5 0|0:0:-0.48,-0.48,-0.48 22 50769029 rs148762611 A G 100 PASS LDAF=0.302;THETA=0.0004;AN=2184;AC=661;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9899;ERATE=0.0007;RSQ=0.9804;AF=0.3;ASN_AF=0.27;AMR_AF=0.32;AFR_AF=0.28;EUR_AF=0.34 GT:DS:GL 0|1:1:-5,-0.89,-0.06 1|0:1:-0.48,-0.48,-0.48 1|1:2:-5,-0.68,-0.1 0|0:0:-0.08,-0.8,-5 1|0:0.95:-0.48,-0.48,-0.48 22 50769075 rs191720251 C T 100 PASS AC=12;ERATE=0.0005;AA=C;LDAF=0.0058;AN=2184;VT=SNP;THETA=0.0037;SNPSOURCE=LOWCOV;RSQ=0.8149;AVGPOST=0.9974;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.24,-0.4,-1.5 0|0:0:-0.28,-0.44,-0.98 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.13,-0.58,-3.47 22 50769076 rs182886673 G A 100 PASS RSQ=0.6665;AA=G;AN=2184;VT=SNP;ERATE=0.001;AVGPOST=0.9778;AC=43;SNPSOURCE=LOWCOV;LDAF=0.0261;THETA=0.0003;AF=0.02;AMR_AF=0.03;AFR_AF=0.03;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0.15:-0.28,-0.44,-0.95 0|0:0:-0.18,-0.47,-2.15 0|0:0.25:-0.13,-0.59,-3.52 22 50769100 rs146866239 C T 100 PASS AC=72;ERATE=0.0014;AA=C;AN=2184;LDAF=0.0369;VT=SNP;THETA=0.0006;RSQ=0.7868;AVGPOST=0.9796;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.12;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.25,-0.44,-1.09 0|0:0:-0.1,-0.68,-4.1 0|0:0:-0.09,-0.75,-5 22 50769161 rs186847255 A G 100 PASS LDAF=0.0071;RSQ=0.5387;AN=2184;AVGPOST=0.9917;VT=SNP;AC=10;AA=A;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.0046;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.19,-0.45,-2.21 0|0:0:-1.76,-0.04,-1.11 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.19,-0.45,-2.14 22 50769184 rs191633018 A G 100 PASS AN=2184;THETA=0.0005;VT=SNP;RSQ=0.4772;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AA=a;ERATE=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.03,-1.25,-5 0|0:0.05:-0.19,-0.46,-2.06 0|0:0.1:-0.19,-0.45,-2.14 22 50769195 . GGAGGCTTA G 656 PASS AVGPOST=0.9966;RSQ=0.8677;AN=2184;VT=INDEL;AC=23;THETA=0.0013;ERATE=0.0006;LDAF=0.0104;AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-0.9,-39.5 0|0:0:0,-1.5,-60.2 0|0:0:0,-0.9,-31.7 0|0:0:0,-0.3,-12.1 0|0:0.05:0,-0.3,-3.4 22 50769387 rs182693809 A G 100 PASS ERATE=0.0004;LDAF=0.0013;AN=2184;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=2;RSQ=0.7282;AVGPOST=0.9992;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.42,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.19,-0.46,-2.16 22 50769407 rs139814298 G A 100 PASS AC=28;AA=G;AN=2184;LDAF=0.0136;THETA=0.0008;VT=SNP;RSQ=0.9125;AVGPOST=0.997;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.14,-0.56,-2.88 0|0:0:-0,-2.49,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.21,-0.43,-1.9 22 50769409 rs143212375 G A 100 PASS ERATE=0.0004;RSQ=0.5595;LDAF=0.0009;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.11,-0.67,-4.4 0|0:0.05:-0.14,-0.56,-2.84 0|0:0:-0,-2.74,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.21,-0.43,-1.9 22 50769456 rs146662012 G A 100 PASS AC=28;AA=G;AN=2184;RSQ=0.9857;THETA=0.0005;VT=SNP;LDAF=0.013;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;ASN_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-1.95,-5 0|0:0:-0,-2.9,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-2.61,-5 22 50769493 rs140228812 C T 100 PASS THETA=0.0009;AN=2184;RSQ=0.9976;VT=SNP;AC=78;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;LDAF=0.0357;ERATE=0.0003;AF=0.04;ASN_AF=0.1;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.81,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-3.17,-5 22 50769542 rs149898569 A C 100 PASS AN=2184;RSQ=0.9472;VT=SNP;LDAF=0.0113;AC=24;AA=A;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.01;ASN_AF=0.03;AMR_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.11,-5 0|0:0:-0,-2.12,-5 0|0:0:-0.01,-1.86,-5 0|0:0:-0,-3.92,-5 22 50769620 rs145014259 C A 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THETA=0.0023;AN=2184;VT=SNP;AVGPOST=0.9923;AA=-;SNPSOURCE=LOWCOV;AC=69;RSQ=0.9053;LDAF=0.0319;ERATE=0.0007;AF=0.03;AMR_AF=0.01;AFR_AF=0.13 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.13,-0.59,-3.3 0|0:0:-0.14,-0.57,-2.69 0|0:0:-0.1,-0.68,-4 0|0:0:-0.13,-0.6,-4.4 22 50774066 rs150203595 G A 100 PASS LDAF=0.0027;THETA=0.0004;RSQ=0.6249;AN=2184;AC=6;VT=SNP;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9974;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.11,-0.64,-3.85 0|0:0:-0.21,-0.43,-1.91 0|0:0:-0.1,-0.68,-4 0|0:0:-0.12,-0.6,-4.4 22 50774127 rs145699543 T C 100 PASS RSQ=0.6952;AN=2184;AVGPOST=0.9797;VT=SNP;AC=51;THETA=0.0027;AA=-;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.0268;AF=0.02;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.06;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.24,-0.41,-1.53 0|0:0:-0.14,-0.56,-3.34 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.19,-0.45,-2.11 22 50774143 rs192498710 C T 100 PASS ERATE=0.0004;RSQ=0.8692;AN=2184;LDAF=0.0032;AC=6;VT=SNP;AVGPOST=0.9991;AA=-;THETA=0.0012;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.24,-0.4,-1.5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.1,-0.68,-4.1 0|0:0:-0.12,-0.61,-3.8 22 50774146 rs145675845 C G 100 PASS AC=48;AVGPOST=0.9946;AN=2184;LDAF=0.0222;VT=SNP;AA=-;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0006;RSQ=0.898;AF=0.02;ASN_AF=0.0017;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.06,-0.88,-5 1|0:0.9:-0.24,-0.4,-1.5 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.1,-0.68,-4 0|0:0:-0.12,-0.62,-3.85 22 50774153 rs185109887 T G 100 PASS AVGPOST=0.9814;AN=2184;RSQ=0.652;THETA=0.0005;VT=SNP;ERATE=0.001;AC=38;AA=-;SNPSOURCE=LOWCOV;LDAF=0.0217;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.19,-0.45,-2.11 22 50774157 rs187451620 A T 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.7158;AN=2184;AC=37;VT=SNP;AVGPOST=0.9859;LDAF=0.0189;AA=-;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.24,-0.41,-1.52 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.18,-0.48,-2.22 0|0:0:-0.12,-0.62,-3.85 22 50774163 rs192210707 G A 100 PASS ERATE=0.0005;AN=2184;RSQ=0.6403;VT=SNP;AA=-;AVGPOST=0.9973;LDAF=0.003;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;AF=0.0018;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.43,-1.91 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.12,-0.61,-3.74 22 50774164 rs138430849 G C 100 PASS ERATE=0.0004;AN=2184;AC=16;AVGPOST=0.999;VT=SNP;AA=-;RSQ=0.9372;SNPSOURCE=LOWCOV;THETA=0.002;LDAF=0.0075;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.43,-1.92 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.12,-0.61,-3.8 22 50774208 rs184044149 C T 100 PASS ERATE=0.0005;RSQ=0.6226;AN=2184;AC=8;VT=SNP;LDAF=0.0061;AA=-;SNPSOURCE=LOWCOV;THETA=0.0034;AVGPOST=0.994;AF=0.0037;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.66,-5 0|0:0:-0.14,-0.56,-3.4 0|0:0:-0.15,-0.53,-2.34 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.05,-5 22 50774261 rs142916324 C T 100 PASS THETA=0.0009;ERATE=0.0005;RSQ=0.5751;AN=2184;LDAF=0.0032;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9965;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.25,-0.4,-1.39 0|0:0:-0.25,-0.44,-1.09 0|0:0:-0.1,-0.68,-4 0|0:0:-0.48,-0.48,-0.48 22 50774262 rs145165810 G A 100 PASS AN=2184;VT=SNP;LDAF=0.0192;AC=38;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0015;RSQ=0.7906;AVGPOST=0.9899;THETA=0.0007;AF=0.02;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0.05:-0.24,-0.4,-1.49 0|0:0:-0.25,-0.44,-1.09 0|0:0.05:-0.1,-0.68,-4 0|0:0:-0.48,-0.48,-0.48 22 50774327 rs189573449 G A 100 PASS AN=2184;RSQ=0.3876;VT=SNP;AVGPOST=0.998;AA=-;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.14,-0.55,-3.3 0|0:0:-0.21,-0.43,-1.87 0|0:0:-0.21,-0.43,-1.69 0|0:0:-0.22,-0.42,-1.72 22 50774374 rs148389704 A G 100 PASS THETA=0.0002;AN=2184;LDAF=0.1527;VT=SNP;RSQ=0.8927;AA=-;ERATE=0.0016;SNPSOURCE=LOWCOV;AC=338;AVGPOST=0.9628;AF=0.15;ASN_AF=0.17;AMR_AF=0.15;AFR_AF=0.24;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.12,-0.63,-4.1 0|1:1:-2.42,-0.08,-0.78 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.2,-0.45,-2.07 22 50774418 rs180702319 T C 100 PASS THETA=0.0009;LDAF=0.0021;AN=2184;ERATE=0.0009;VT=SNP;AA=-;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=2;RSQ=0.5394;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.56,-5 0|0:0:-0.07,-0.83,-5 0|0:0.35:-0.06,-0.91,-5 0|0:0:-0.09,-0.74,-4.7 22 50774452 rs184310864 C T 100 PASS ERATE=0.0004;RSQ=0.7018;LDAF=0.0016;AN=2184;VT=SNP;THETA=0.0055;AA=-;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.06,-0.89,-5 22 50774607 rs141570874 C T 100 PASS RSQ=0.9258;AN=2184;AVGPOST=0.9914;VT=SNP;THETA=0.0006;LDAF=0.0452;AA=-;SNPSOURCE=LOWCOV;AC=96;ERATE=0.0007;AF=0.04;AMR_AF=0.02;AFR_AF=0.18 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.35,-0.43,-0.73 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4 0|0:0:-0.2,-0.44,-2.69 22 50774709 rs189640933 G A 100 PASS ERATE=0.0005;LDAF=0.0027;THETA=0.0014;AN=2184;AC=6;VT=SNP;RSQ=0.7435;AA=-;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AF=0.0027;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0.05,-1.01,-5 0|0:0:-0.12,-0.63,-3.59 0|0:0:-0.04,-1.07,-5 22 50774795 rs181807127 G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AN=2184;RSQ=0.5965;VT=SNP;LDAF=0.0007;AA=-;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.61,-5 22 50774821 rs150519056 T C 100 PASS ERATE=0.0005;LDAF=0.0137;RSQ=0.8097;THETA=0.0004;AN=2184;AC=26;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AVGPOST=0.9931;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.15,-0.55,-2.6 1|0:0.7:-0.03,-1.2,-5 0|0:0:-0.02,-1.43,-5 22 50774836 rs139451753 G A 100 PASS ERATE=0.0004;THETA=0.0014;AN=2184;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0012;AC=2;RSQ=0.7802;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.02,-1.38,-5 0|0:0:-0.14,-0.57,-2.79 0|0:0:-0.03,-1.15,-5 0|0:0:-0.05,-0.93,-5 22 50774863 rs36189634 A T 100 PASS AVGPOST=0.9896;AC=919;AN=2184;LDAF=0.4184;VT=SNP;THETA=0.0006;RSQ=0.9842;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.42;ASN_AF=0.29;AMR_AF=0.38;AFR_AF=0.71;EUR_AF=0.35 GT:DS:GL 0|1:1:-4.7,-0.02,-1.45 1|0:0.9:-0.04,-1.07,-5 1|1:2:-0.25,-0.4,-1.44 0|0:0:-0.09,-0.75,-4.7 1|0:1:-3.52,-0.48,-0.18 22 50774949 rs186411506 C T 100 PASS ERATE=0.0004;THETA=0.0026;AN=2184;VT=SNP;AA=-;RSQ=0.572;LDAF=0.0028;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AF=0.0023;ASN_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.14,-0.55,-3.32 0|0:0:-0.24,-0.45,-1.15 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.55,-5 22 50774950 rs190368722 G A 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9976;LDAF=0.0029;AA=-;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6994;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.13,-0.58,-3.55 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.8,-5 22 50775006 rs147367538 A T 100 PASS THETA=0.0009;AN=2184;AC=13;RSQ=0.8706;VT=SNP;AVGPOST=0.998;LDAF=0.0064;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.16,-0.51,-2.51 0|0:0:-0.06,-0.9,-5 0|0:0:-0.18,-0.47,-3.08 22 50775617 rs145268531 C T 100 PASS AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9646;LDAF=0.052;AA=-;RSQ=0.7295;ERATE=0.0127;SNPSOURCE=LOWCOV;AC=91;AF=0.04;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.12;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.05,-5 0|0:0.05:-0.09,-0.74,-3.8 0|0:0:-0,-2,-5 0|0:0.05:-0.11,-0.66,-5 22 50775637 . AGTGT A 2188 PASS LDAF=0.4147;AN=2184;VT=INDEL;AVGPOST=0.9791;AC=912;THETA=0.0013;ERATE=0.0056;RSQ=0.9693;AF=0.42;ASN_AF=0.29;AMR_AF=0.38;AFR_AF=0.71;EUR_AF=0.34 GT:DS:GL 0|1:1:-10.1,0,-7 1|0:0.9:0,-0.3,-7.9 1|1:1.9:0,0,0 0|0:0:0,-1.8,-47.6 1|0:1.05:-5.5,-0.3,0 22 50775787 rs144995558 G A 100 PASS LDAF=0.0181;AN=2184;RSQ=0.9789;VT=SNP;AVGPOST=0.9991;AA=-;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=39;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.99,-5 0|0:0:-0.08,-0.78,-4.1 0|0:0:-0.09,-0.75,-2.98 0|0:0:-0,-2.52,-5 0|0:0:-0.48,-0.48,-0.48 22 50775907 . TTGTC T 1024 PASS LDAF=0.049;THETA=0.0014;AN=2184;AC=107;VT=INDEL;ERATE=0.0017;RSQ=0.9474;AVGPOST=0.9937;AF=0.05;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.14;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-1.2,-32.9 0|0:0:0,-0.3,-8.2 0|0:0.05:0,-0.9,-19.4 0|0:0:0,-1.2,-32.9 0|0:0:0,-1.2,-31.9 22 50776091 . TG T 1631 PASS LDAF=0.1002;AN=2184;VT=INDEL;RSQ=0.9594;AC=218;ERATE=0.0007;THETA=0.0003;AVGPOST=0.9876;AF=0.1;AMR_AF=0.04;AFR_AF=0.39;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.5,-22.2 0|0:0:0,-0.9,-14 0|0:0:0,-0.3,-4.8 0|0:0:0,-3,-46.8 0|0:0:0,-0.9,-14 22 50776135 rs181610147 G A 100 PASS LDAF=0.0336;AC=73;THETA=0.0004;AN=2184;VT=SNP;AA=-;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.9872;ERATE=0.0003;AF=0.03;ASN_AF=0.1;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.56,-5 0|0:0:-0.01,-1.94,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-3.1,-5 0|0:0:-0.04,-1.05,-5 22 50776152 rs186314729 T C 100 PASS LDAF=0.1115;THETA=0.0044;AC=244;RSQ=0.9945;AN=2184;VT=SNP;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.11;ASN_AF=0.2;AMR_AF=0.15;AFR_AF=0.0041;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.42,-5 0|1:1:-5,0,-5 0|0:0:-0,-2.65,-5 0|0:0:-0.07,-0.85,-5 22 50776266 rs191234553 G T 100 PASS THETA=0.0014;AN=2184;LDAF=0.004;VT=SNP;AA=-;ERATE=0.0018;SNPSOURCE=LOWCOV;AC=3;RSQ=0.4129;AVGPOST=0.994;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.01,-1.64,-5 0|0:0:-0.07,-0.8,-5 22 50776613 . CTG C 751 PASS ERATE=0.0004;LDAF=0.0078;AN=2184;VT=INDEL;AC=16;AVGPOST=0.9989;THETA=0.0012;RSQ=0.9459;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-0.6,-10.8 0|0:0:0,-0.6,-10.8 0|0:0:0,-0.3,-4.7 0|0:0:0,-4.2,-72 0|0:0:0,-1.5,-27 22 50776615 rs183436469 G A 100 PASS AN=2184;AC=49;VT=SNP;LDAF=0.0223;AA=-;RSQ=0.9845;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0024;AVGPOST=0.9992;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.98,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.87,-5 22 50776782 rs187591537 A G 100 PASS RSQ=0.9682;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.1442;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0029;AC=309;AVGPOST=0.9887;AF=0.14;ASN_AF=0.02;AMR_AF=0.15;AFR_AF=0.14;EUR_AF=0.23 GT:DS:GL 0|1:1:-0.19,-0.46,-2.27 1|0:1:-1.97,-0.02,-1.5 1|0:1:-1.75,-0.01,-3.04 0|0:0:-0,-3.06,-5 1|0:0.75:-0.18,-0.46,-3 22 50776912 rs189967104 T G 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=-;RSQ=0.524;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.25,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.07,-0.85,-5 0|0:0:0,-5,-5 0|0:0:-0.02,-1.34,-5 22 50777691 . TTGTG T 2641 PASS ERATE=0.0004;LDAF=0.1054;AN=2184;RSQ=0.9783;AVGPOST=0.9934;VT=INDEL;THETA=0.0005;AC=231;AF=0.11;AMR_AF=0.04;AFR_AF=0.41;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.5,-41.1 0|0:0:0,-0.6,-16.1 0|0:0:0,-0.3,-8.2 0|0:0:-0.1,0,-141.6 0|0:0:0,-0.9,-17.6 22 50777749 . A AGT 2110 PASS THETA=0.0014;AN=2184;RSQ=0.9641;ERATE=0.0068;VT=INDEL;LDAF=0.4131;AC=905;AVGPOST=0.9761;AF=0.41;ASN_AF=0.29;AMR_AF=0.38;AFR_AF=0.68;EUR_AF=0.35 GT:DS:GL 0|1:1:-24.1,0,-5.3 1|0:1:0,0,0 1|1:1.95:0,0,0 0|0:0:0,-5.1,-61.4 1|0:0.75:0,-0.3,-3.9 22 50778564 . TAC T 955 PASS LDAF=0.1586;AN=2184;AVGPOST=0.9853;VT=INDEL;ERATE=0.0017;AC=351;THETA=0.0003;RSQ=0.9623;AF=0.16;ASN_AF=0.08;AMR_AF=0.15;AFR_AF=0.16;EUR_AF=0.22 GT:DS:GL 0|1:1.05:-2.2,-0.3,0 1|0:0.95:0,-0.3,-5.7 1|0:0.95:0,-0.6,-11.1 0|0:0:0,-3.6,-69.6 1|0:0.7:0,-0.9,-14.1 22 50778565 . ACAGT A 2487 PASS THETA=0.0009;LDAF=0.1563;AN=2184;VT=INDEL;AVGPOST=0.9899;ERATE=0.0006;AC=346;RSQ=0.9733;AF=0.16;ASN_AF=0.08;AMR_AF=0.15;AFR_AF=0.16;EUR_AF=0.22 GT:DS:GL 0|1:1:-6.3,-0.3,0 1|0:0.95:0,-0.3,-8.7 1|0:0.95:0,-0.6,-14 0|0:0:0,-3.6,-103.8 1|0:0.7:0,-0.9,-22.4 22 50779157 rs183262030 C T 100 PASS LDAF=0.0009;THETA=0.0026;RSQ=0.623;AN=2184;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9992;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.02,-1.32,-5 22 50779408 rs187973022 T C 100 PASS THETA=0.0004;AN=2184;RSQ=0.3774;VT=SNP;LDAF=0.0019;AVGPOST=0.9971;AA=-;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;ASN_AF=0.0017;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50779826 rs146545038 G A 100 PASS AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0026;AA=-;AC=5;SNPSOURCE=LOWCOV;RSQ=0.9013;ERATE=0.0003;AVGPOST=0.9995;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.07,-0.84,-5 0|0:0.1:-0.22,-0.46,-1.27 0|0:0:-0.02,-1.46,-5 0|0:0:-0.48,-0.48,-0.48 22 50779922 rs191957078 C T 100 PASS AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;AA=-;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6216;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.08,-0.76,-4.4 0|0:0:-0.07,-0.84,-5 0|0:0:-0.06,-0.86,-5 22 50779990 rs117663360 C T 100 PASS ERATE=0.0004;THETA=0.0015;LDAF=0.0181;AVGPOST=0.9946;AN=2184;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AC=36;RSQ=0.8864;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.27,-0.38,-1.34 22 50780272 rs185196848 A T 100 PASS AN=2184;RSQ=0.4374;VT=SNP;LDAF=0.0038;AA=-;SNPSOURCE=LOWCOV;AC=4;THETA=0.0043;ERATE=0.0007;AVGPOST=0.9949;AF=0.0018;ASN_AF=0.0035;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.09,-0.73,-4.4 0|0:0:-0.2,-0.44,-2.67 22 50780278 rs188819390 C T 100 PASS RSQ=0.5666;AN=2184;VT=SNP;AVGPOST=0.9919;AA=-;SNPSOURCE=LOWCOV;THETA=0.001;AC=11;ERATE=0.0007;LDAF=0.008;AF=0.01;ASN_AF=0.01;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.07,-0.83,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.09,-0.72,-4.4 0|0:0:-0.2,-0.44,-2.67 22 50780338 rs192696011 C G 100 PASS AN=2184;LDAF=0.004;AC=6;RSQ=0.5775;VT=SNP;AA=-;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.996;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.01,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-1.99 0|0:0:-0.35,-0.4,-0.81 22 50780444 rs116968916 G A 100 PASS AC=17;LDAF=0.0083;AN=2184;RSQ=0.8815;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0007;THETA=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.18,-0.5,-1.57 0|0:0:-0.06,-0.92,-5 0|0:0:-0.06,-0.89,-5 22 50780493 rs59137481 A G 100 PASS LDAF=0.2267;AN=2184;AC=496;AVGPOST=0.9944;THETA=0.0008;VT=SNP;AA=-;SNPSOURCE=LOWCOV;RSQ=0.9883;ERATE=0.0006;AF=0.23;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.46;EUR_AF=0.11 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0.04,-1.02,-4.4 0|1:1.05:-5,-0.66,-0.11 0|0:0:-0.1,-0.69,-4.22 0|0:0:-0.18,-0.46,-3.03 22 50780512 rs118113658 C T 100 PASS ERATE=0.0005;AN=2184;LDAF=0.0304;RSQ=0.8963;VT=SNP;THETA=0.0011;AA=-;AVGPOST=0.9916;SNPSOURCE=LOWCOV;AC=63;AF=0.03;ASN_AF=0.11;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.24,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.17,-0.5,-2.46 0|0:0:-0.48,-0.48,-0.48 22 50780949 rs67048095 A G 100 PASS ERATE=0.0005;LDAF=0.3063;RSQ=0.9934;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AA=N;AC=672;THETA=0.0003;AVGPOST=0.9965;AF=0.31;ASN_AF=0.38;AMR_AF=0.23;AFR_AF=0.54;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.04,-1.05,-5 0|1:1:-5,-0.4,-0.22 0|0:0:-0.06,-0.92,-5 0|0:0:-0.06,-0.9,-5 22 50780980 rs74875961 T A 100 PASS LDAF=0.0187;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=36;THETA=0.0007;AA=N;ERATE=0.0007;RSQ=0.8623;AVGPOST=0.9932;AF=0.02;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.63,-5 22 50781013 . GCAATACACTGACAA G 586 PASS AVGPOST=0.9994;LDAF=0.0092;AN=2184;VT=INDEL;AC=20;THETA=0.0008;ERATE=0.0003;RSQ=0.9724;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-0.3,-21.4 0|0:0:0,-0.9,-64.2 0|0:0:0,-0.6,-42.8 0|0:0:0,-0.3,-21.4 0|0:0:0,-0.6,-42.8 22 50781067 rs184992785 T C 100 PASS AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.8517;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;THETA=0.0013;ERATE=0.0003;AA=t;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.55,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0,-2.69,-5 22 50781072 rs141315928 C G 100 PASS LDAF=0.0036;AN=2184;AC=8;VT=SNP;AA=c;RSQ=0.9413;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.82,-5 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0,-3.7,-5 22 50781347 rs142322359 T C 100 PASS THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0193;AC=32;ERATE=0.0016;RSQ=0.7326;SNPSOURCE=LOWCOV;AVGPOST=0.9881;AA=t;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 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0|1:1:0,0,0 0|0:0:0,-0.3,-2.1 0|0:0.1:0,-0.3,-3.7 22 50782288 rs184600086 C T 100 PASS AN=2184;LDAF=0.1548;VT=SNP;AA=-;ERATE=0.0195;AVGPOST=0.7698;SNPSOURCE=LOWCOV;THETA=0.0007;AC=125;RSQ=0.2845;AF=0.06;ASN_AF=0.04;AMR_AF=0.07;AFR_AF=0.07;EUR_AF=0.05 GT:DS:GL 0|0:0.5:-0.48,-0.48,-0.48 1|0:1:-0.48,-0.48,-0.48 0|0:0.25:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50782315 rs189337926 C T 100 PASS RSQ=0.2415;THETA=0.0004;AN=2184;ERATE=0.0349;AC=259;VT=SNP;AA=-;AVGPOST=0.6638;SNPSOURCE=LOWCOV;LDAF=0.2472;AF=0.12;ASN_AF=0.14;AMR_AF=0.06;AFR_AF=0.19;EUR_AF=0.09 GT:DS:GL 1|0:0.55:-0.48,-0.48,-0.48 0|0:0.55:-0.28,-0.43,-1 0|0:0.2:-0.22,-0.46,-1.27 0|0:0.5:-0.48,-0.48,-0.48 0|0:0.6:-0.48,-0.48,-0.48 22 50783818 rs181396121 C T 100 PASS AN=2184;RSQ=0.3689;VT=SNP;AA=c;ERATE=0.0045;LDAF=0.0685;AVGPOST=0.8947;AC=66;THETA=0.0019;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.06;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.58,-2.85 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T TG 274 PASS AC=1082;LDAF=0.4947;RSQ=0.8678;AN=2184;VT=INDEL;THETA=0.0008;AVGPOST=0.9043;ERATE=0.0172;AF=0.5;ASN_AF=0.42;AMR_AF=0.41;AFR_AF=0.8;EUR_AF=0.39 GT:DS:GL 0|1:1:-9.1,0,-2.2 1|0:1:-2.3,0,-3.2 1|1:1.95:-5.3,-0.6,0 0|0:0.05:0,-0.3,-3.2 1|0:1:0,0,0 22 50789547 rs182058835 G A 100 PASS RSQ=0.6286;LDAF=0.0132;AA=g;AN=2184;AVGPOST=0.988;VT=SNP;AC=23;THETA=0.0006;ERATE=0.0018;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.14,-0.57,-3.49 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.76,-0.08,-3.18 0|0:0:-0.48,-0.48,-0.48 22 50789650 rs186156396 G A 100 PASS AN=2184;LDAF=0.0216;VT=SNP;RSQ=0.8804;AVGPOST=0.993;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0006;AA=N;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.11,-0.65,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4.1 0|0:0:-0.48,-0.48,-0.48 22 50789797 rs116877250 G A 100 PASS LDAF=0.0133;RSQ=0.9675;AC=28;AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9989;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0,-2.6,-5 22 50789937 rs188702819 A G 100 PASS THETA=0.0009;AN=2184;AVGPOST=0.9997;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7149;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.99,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.09,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.05,-5 22 50789956 rs28880677 G A 100 PASS AN=2184;AC=873;THETA=0.0008;VT=SNP;AA=-;AVGPOST=0.997;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9951;LDAF=0.3992;AF=0.4;ASN_AF=0.29;AMR_AF=0.36;AFR_AF=0.63;EUR_AF=0.34 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0,-4.1 0|1:1:-5,0,-5 0|0:0.05:-0.05,-0.94,-5 1|0:1:-5,-0.01,-1.84 22 50789996 rs181391957 A G 100 PASS LDAF=0.0009;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9991;AA=-;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5467;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.01,-1.58,-5 0|0:0:-0,-2.1,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.07,-0.83,-5 22 50790027 rs146020194 A G 100 PASS RSQ=0.5602;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9989;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.64,-4.1 22 50790028 rs148720032 C A 100 PASS AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0011;AA=-;RSQ=0.8582;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0.05:-0.04,-1.07,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.11,-0.64,-4.1 22 50790036 rs73439342 A G 100 PASS ERATE=0.0005;AVGPOST=0.9983;AN=2184;RSQ=0.9418;VT=SNP;AC=23;AA=-;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0108;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0.11,-0.64,-4.1 22 50790213 rs185298997 C T 100 PASS AC=7;ERATE=0.0005;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0044;SNPSOURCE=LOWCOV;AVGPOST=0.9958;AA=N;RSQ=0.6739;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.11,-0.66,-4.1 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.18,-5 0|0:0:-0.19,-0.45,-2.15 22 50790342 rs189956940 C T 100 PASS ERATE=0.0004;LDAF=0.0009;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.532;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AA=N;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.48,-0.48,-0.48 22 50790579 . 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A 100 PASS AC=7;THETA=0.0039;LDAF=0.0035;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9303;ERATE=0.0003;AVGPOST=0.9995;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.12,-0.62,-3.85 0|0:0:-0.48,-0.48,-0.48 22 50792913 rs182301080 T C 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.5979;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.01,-1.58,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.16,-0.51,-2.62 0|0:0:-0.48,-0.48,-0.48 22 50792931 rs185865828 C A 100 PASS RSQ=0.9333;AA=C;AN=2184;AC=6;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.0029;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.19,-0.45,-2.14 22 50793654 . C CCTT 236 PASS THETA=0.0004;AN=2184;RSQ=0.9426;ERATE=0.0009;VT=INDEL;AC=850;AVGPOST=0.9588;LDAF=0.3864;AF=0.39;ASN_AF=0.29;AMR_AF=0.35;AFR_AF=0.65;EUR_AF=0.32 GT:DS:GL 0|1:1:-3.8,0,-6.4 1|0:1:-5.2,-0.6,0 1|1:1.9:-2.6,-0.3,0 0|0:0:0,0,0 1|0:0.85:0,0,0 22 50793659 rs71691118 T TTC 220 PASS THETA=0.0009;AC=841;RSQ=0.9367;AN=2184;LDAF=0.3801;VT=INDEL;ERATE=0.0008;AVGPOST=0.9553;AF=0.39;ASN_AF=0.29;AMR_AF=0.35;AFR_AF=0.63;EUR_AF=0.31 GT:DS:GL 0|1:1:-2.9,0,-6.6 1|0:1:-5.2,-0.6,0 1|1:1.85:-2.6,-0.3,0 0|0:0:0,0,0 1|0:0.8:0,0,0 22 50793660 . T TC 248 PASS LDAF=0.36;ERATE=0.0076;AN=2184;VT=INDEL;RSQ=0.889;AVGPOST=0.9284;THETA=0.001;AC=800;AF=0.37;ASN_AF=0.28;AMR_AF=0.34;AFR_AF=0.58;EUR_AF=0.31 GT:DS:GL 0|1:1:-2.6,0,-6.6 1|0:1:-2.5,-0.3,0 1|1:1.9:-2.6,-0.3,0 0|0:0:0,0,0 1|0:0.9:0,0,0 22 50793697 rs190618151 C T 100 PASS RSQ=0.6002;AA=C;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;ERATE=0.0006;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.6,-3.11 0|0:0:-0.21,-0.43,-1.91 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.12,-0.62,-3.85 22 50793720 rs182481653 G T 100 PASS ERATE=0.0005;LDAF=0.0053;RSQ=0.7812;AA=G;AN=2184;VT=SNP;AVGPOST=0.9971;AC=9;THETA=0.0037;SNPSOURCE=LOWCOV;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.2,-0.44,-2.05 0|0:0:-0.06,-0.91,-5 0|0:0:-0.12,-0.63,-3.92 22 50793753 rs187077212 G A 100 PASS AC=7;RSQ=0.4253;AA=G;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;LDAF=0.0065;AVGPOST=0.9898;AF=0.0032;ASN_AF=0.01;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.67,-3.92 0|0:0:-0.48,-0.48,-0.48 22 50793953 rs190590115 C T 100 PASS AC=12;ERATE=0.0004;AA=C;LDAF=0.0068;AN=2184;AVGPOST=0.9952;RSQ=0.734;VT=SNP;THETA=0.0027;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.21,-0.43,-2.28 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.83,-5 22 50794255 rs117017854 T A 100 PASS AN=2184;VT=SNP;THETA=0.0006;LDAF=0.1125;RSQ=0.9809;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0007;AA=t;AC=247;AF=0.11;ASN_AF=0.2;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.15,-0.55,-2.81 0|1:1:-0.17,-0.5,-2.49 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.11,-0.64,-4.1 22 50794270 . G GA 16 PASS LDAF=0.1267;AN=2184;VT=INDEL;RSQ=0.4315;THETA=0.0006;AVGPOST=0.8435;ERATE=0.0221;AC=158;AF=0.07;ASN_AF=0.05;AMR_AF=0.07;AFR_AF=0.1;EUR_AF=0.07 GT:DS:GL 0|0:0.2:0,-1.2,-9.3 0|0:0.3:0,0,0 0|0:0.4:0,0,0 0|0:0.2:0,-0.3,-2.3 0|0:0.4:0,0,0 22 50794281 . AC A 99 PASS AC=440;AN=2184;VT=INDEL;ERATE=0.0026;LDAF=0.1987;RSQ=0.8758;THETA=0.0007;AVGPOST=0.945;AF=0.2;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.39;EUR_AF=0.1 GT:DS:GL 0|0:0:0,-0.8,-12.9 0|0:0:0,0,0 0|1:0.9:0,0,0 0|0:0:0,-0.3,-4 0|0:0:0,0,0 22 50794282 rs28797322 C A 100 PASS LDAF=0.2048;AC=426;ERATE=0.0242;AN=2184;RSQ=0.8411;VT=SNP;AVGPOST=0.9303;SNPSOURCE=LOWCOV;AA=N;THETA=0.0003;AF=0.2;ASN_AF=0.19;AMR_AF=0.18;AFR_AF=0.36;EUR_AF=0.1 GT:DS:GL 0|0:0.05:-0.03,-1.16,-5 0|0:0:-0.12,-0.61,-2.35 0|0:0.05:-0.01,-1.53,-5 0|0:0:-0.13,-0.58,-3.34 0|0:0.2:-0.48,-0.48,-0.48 22 50794331 . AAC A 259 PASS ERATE=0.0005;RSQ=0.9071;AN=2184;VT=INDEL;THETA=0.003;AC=15;AVGPOST=0.9984;LDAF=0.0073;AF=0.01;AFR_AF=0.03;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-1.8,-33 0|0:0:0,-1.2,-16.2 0|0:0:0,-0.6,-11 0|0:0:0,0,0 0|0:0:0,0,0 22 50794499 rs182880794 C T 100 PASS AA=C;RSQ=0.6824;AN=2184;AVGPOST=0.9947;VT=SNP;AC=14;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;LDAF=0.0073;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.48,-0.48,-0.48 22 50794538 rs28840684 C T 100 PASS AA=C;RSQ=0.9855;AN=2184;AVGPOST=0.9935;VT=SNP;THETA=0.0017;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=506;LDAF=0.2316;AF=0.23;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.47;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.07,-0.83,-5 0|0:0:-0.12,-0.62,-4 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50794721 rs77549310 C G 100 PASS ERATE=0.0004;AA=C;AC=48;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0229;RSQ=0.9553;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.06;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.1,-0.67,-4 0|0:0:-0.11,-0.64,-4.7 22 50794781 rs148499914 G A 100 PASS AA=G;AN=2184;THETA=0.0005;RSQ=0.5482;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0006;AC=3;AF=0.0014;AMR_AF=0.01;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.19,-0.46,-1.98 0|0:0:-0.11,-0.64,-4.7 22 50794804 rs116735347 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0014;AN=2184;VT=SNP;AC=129;AVGPOST=0.9969;SNPSOURCE=LOWCOV;RSQ=0.9792;LDAF=0.0588;AF=0.06;ASN_AF=0.13;AMR_AF=0.03;AFR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.36,-5 22 50794990 rs187727207 A G 100 PASS THETA=0.0021;ERATE=0.0004;AN=2184;VT=SNP;AA=A;LDAF=0.0014;SNPSOURCE=LOWCOV;RSQ=0.7541;AC=3;AVGPOST=0.9992;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-4,-5 22 50795030 rs193247471 G T 100 PASS ERATE=0.0005;LDAF=0.0016;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.425;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9978;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0.1:-0.01,-1.55,-5 0|0:0:-0,-2.73,-5 0|0:0:-0,-2.31,-5 0|0:0:-0,-3.74,-5 22 50795071 rs73188926 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;AC=303;AVGPOST=0.9948;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.1385;RSQ=0.983;AF=0.14;ASN_AF=0.02;AMR_AF=0.15;AFR_AF=0.12;EUR_AF=0.23 GT:DS:GL 0|1:1:-3.92,-0,-5 1|0:1:-5,-0.03,-1.16 1|0:1:-4,-0,-4.4 0|0:0:-0.01,-1.74,-5 1|0:1:-0.2,-0.45,-2.04 22 50795079 rs185022200 C T 100 PASS AVGPOST=0.9957;AA=C;AN=2184;LDAF=0.004;THETA=0.0005;VT=SNP;ERATE=0.001;RSQ=0.572;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.2,-0.44,-2.08 0|0:0:-0.01,-1.7,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.18,-0.47,-2.29 22 50795146 rs143922184 A T 100 PASS ERATE=0.0005;AC=30;LDAF=0.0141;AN=2184;RSQ=0.9177;VT=SNP;AA=A;AVGPOST=0.9973;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.09,-0.74,-4.4 0|0:0:-0.25,-0.4,-1.41 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.85,-5 22 50795310 rs57198842 G C 100 PASS LDAF=0.2309;AA=C;AN=2184;AVGPOST=0.9871;VT=SNP;AC=505;ERATE=0.001;RSQ=0.9748;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.23;ASN_AF=0.2;AMR_AF=0.19;AFR_AF=0.47;EUR_AF=0.12 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.13,-0.6,-3.12 0|1:1:-0.19,-0.45,-2.17 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.15 22 50795341 rs140922826 C T 100 PASS AA=C;THETA=0.0002;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.5202;AVGPOST=0.9961;ERATE=0.0007;LDAF=0.0031;AF=0.0027;ASN_AF=0.0035;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.07,-0.82,-5 0|1:0.6:-0.15,-0.53,-2.49 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.2,-0.44,-2.01 22 50795342 rs144869866 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8714;LDAF=0.0122;SNPSOURCE=LOWCOV;AVGPOST=0.9958;AC=25;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.23,-0.42,-1.67 0|0:0:-0.19,-0.46,-2.38 0|0:0:-0.2,-0.45,-2.04 22 50795342 . GA G 122 PASS ERATE=0.0005;THETA=0.0002;AN=2184;RSQ=0.8713;VT=INDEL;AVGPOST=0.9971;AC=14;LDAF=0.0074;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-0.9,-14.4 0|0:0:0,-0.9,-14.3 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-4.8 22 50795485 rs187463789 A C 100 PASS ERATE=0.0004;AN=2184;RSQ=0.5039;THETA=0.0005;VT=SNP;AA=A;LDAF=0.0022;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-3.11,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0.01,-1.84,-5 22 50795486 rs147927962 C T 100 PASS AVGPOST=0.9985;AA=C;AN=2184;LDAF=0.004;AC=8;THETA=0.0008;VT=SNP;RSQ=0.8362;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-2.76,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.84,-5 22 50795502 rs192215706 C T 100 PASS LDAF=0.0009;RSQ=0.6441;AA=C;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-2.88,-5 22 50795551 rs184048531 A G 100 PASS LDAF=0.0009;THETA=0.0004;AN=2184;RSQ=0.5711;AVGPOST=0.999;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.42,-5 0|0:0:-0,-2.37,-5 0|0:0:-0,-3.13,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0,-2.46,-5 22 50795591 rs189859822 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0.05:-0.11,-0.65,-5 0|0:0:-0.05,-1.01,-5 0|0:0:-0,-3.06,-5 0|0:0:-0.19,-0.46,-2.37 0|0:0:-0,-2.45,-5 22 50795620 rs79865452 A G 100 PASS ERATE=0.0004;LDAF=0.012;AN=2184;VT=SNP;AVGPOST=0.9976;AC=24;AA=A;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9099;AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.35,-5 0|0:0:-0,-3.36,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.46,-5 22 50795743 rs180722556 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0019;THETA=0.0006;AVGPOST=0.9989;RSQ=0.795;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.06,-0.92,-5 22 50795806 rs28645281 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=513;VT=SNP;RSQ=0.997;THETA=0.0012;SNPSOURCE=LOWCOV;LDAF=0.2341;AVGPOST=0.9987;AF=0.23;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.49;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.57,-5 0|1:1:-5,-0,-4 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-3.85,-5 22 50795815 rs184433591 C T 100 PASS LDAF=0.0013;AA=C;RSQ=0.7687;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.87,-5 0|0:0:-0,-3.02,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-3.8,-5 22 50795819 . TTCCC T 258 PASS ERATE=0.0004;RSQ=0.9497;THETA=0.0004;AN=2184;LDAF=0.011;VT=INDEL;AC=23;AVGPOST=0.9988;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-1.2,-31.2 0|0:0:0,-1.8,-46.6 0|0:0:0,-0.6,-10.2 0|0:0:0,-0.3,-7.9 0|0:0:0,-0.9,-23.3 22 50795853 rs189362664 C A 100 PASS AA=C;AN=2184;RSQ=0.4283;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AVGPOST=0.9974;LDAF=0.0017;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0,-2.13,-5 22 50795918 . GTC G 52 PASS RSQ=0.6629;LDAF=0.0206;AVGPOST=0.9827;AN=2184;THETA=0.0031;VT=INDEL;ERATE=0.0051;AC=32;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.9,-14.9 1|0:0.95:-2.6,0,-12.4 0|0:0:0,-1.2,-15 0|0:0:0,-0.9,-14.9 0|0:0:0,-0.3,-5 22 50795934 rs60225523 T C 100 PASS THETA=0.0004;AA=T;AN=2184;LDAF=0.2306;VT=SNP;RSQ=0.9869;SNPSOURCE=LOWCOV;ERATE=0.0012;AVGPOST=0.9931;AC=504;AF=0.23;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.49;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.6,-5 0|1:1:-5,-0.01,-1.67 0|0:0:-0,-1.95,-5 0|0:0:-0,-2.74,-5 22 50795938 rs139428952 T G 100 PASS LDAF=0.0027;RSQ=0.8767;AA=T;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9991;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.57,-5 0|0:0.05:-0.73,-0.09,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.74,-5 22 50795959 rs78047284 G C 100 PASS AVGPOST=0.9994;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0154;AC=33;RSQ=0.9833;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.06;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-1.94,-5 22 50795987 rs181821031 G A 100 PASS ERATE=0.0005;LDAF=0.0013;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;RSQ=0.735;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.52,-5 0|0:0:-0,-2.83,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.01,-1.82,-5 22 50796003 rs186415971 A G 100 PASS AVGPOST=0.9985;AN=2184;RSQ=0.6406;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0006;AC=2;LDAF=0.0017;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.84,-5 0|0:0:-0,-2.36,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.87,-5 22 50796247 rs190370781 G T 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=G;AN=2184;VT=SNP;THETA=0.0033;LDAF=0.0019;RSQ=0.7216;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.08,-0.76,-5 0|0:0:-0.19,-0.46,-2.35 0|0:0:-0.05,-0.98,-5 22 50796275 rs150056134 T G 100 PASS AA=T;AN=2184;AC=8;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.0045;THETA=0.0003;RSQ=0.7699;AF=0.0037;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.58,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.02,-1.31,-5 22 50796278 rs117553138 C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0072;AC=14;RSQ=0.7445;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.57,-5 22 50796296 rs28540936 G A 100 PASS RSQ=0.969;AA=G;AN=2184;AVGPOST=0.9869;THETA=0.0008;VT=SNP;ERATE=0.0026;AC=325;LDAF=0.1517;SNPSOURCE=LOWCOV;AF=0.15;ASN_AF=0.03;AMR_AF=0.06;AFR_AF=0.52;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.08,-0.78,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0.02,-1.32,-5 22 50796301 rs145473867 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;RSQ=0.8432;AVGPOST=0.9992;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.07,-0.84,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.05,-0.95,-5 22 50796314 rs148815527 A G 100 PASS LDAF=0.0013;RSQ=0.7348;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AVGPOST=0.9992;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.19,-0.45,-2.19 0|0:0:-0.1,-0.7,-4.4 0|0:0:-0.02,-1.42,-5 0|0:0:-0.02,-1.28,-5 22 50796358 rs181614471 C A 100 PASS ERATE=0.0004;AA=C;RSQ=0.6141;AVGPOST=0.9994;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.07,-0.8,-4.7 0|0:0:-0.06,-0.92,-5 0|0:0:-0.11,-0.65,-4.7 22 50796405 rs113698185 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;LDAF=0.0016;RSQ=0.4778;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9978;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.6,-3.7 0|0:0:-0.1,-0.68,-4 0|0:0:-0.11,-0.65,-4.7 22 50796448 rs111945246 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;LDAF=0.129;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.986;AC=280;AVGPOST=0.9958;AF=0.13;ASN_AF=0.02;AMR_AF=0.15;AFR_AF=0.08;EUR_AF=0.23 GT:DS:GL 0|1:1:-2.05,-0,-3.52 1|0:1:-2.05,-0.01,-2.32 1|0:1:-1.42,-0.02,-4.4 0|0:0:-0.06,-0.89,-5 1|0:1:-2.13,-0,-2.97 22 50796459 rs191378132 C T 100 PASS LDAF=0.0021;AA=C;RSQ=0.5693;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9978;ERATE=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.13,-0.58,-3.55 0|0:0:-0.02,-1.29,-5 0|0:0:-0.07,-0.81,-5 22 50796460 rs28638301 G A 100 PASS AC=545;AN=2184;RSQ=0.9684;VT=SNP;AA=A;LDAF=0.2527;ERATE=0.0016;SNPSOURCE=LOWCOV;AVGPOST=0.9819;THETA=0.0003;AF=0.25;ASN_AF=0.23;AMR_AF=0.21;AFR_AF=0.53;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.04,-1.02,-5 0|1:1:-4.7,-0.66,-0.11 0|0:0:-0.02,-1.36,-5 0|0:0:-0.07,-0.83,-5 22 50796542 . AT A 57 PASS RSQ=0.9219;AVGPOST=0.9775;AC=268;THETA=0.0004;AN=2184;VT=INDEL;ERATE=0.0011;LDAF=0.1201;AF=0.12;ASN_AF=0.19;AMR_AF=0.16;AFR_AF=0.06;EUR_AF=0.09 GT:DS:GL 0|0:0:0,-2.1,-26.6 0|0:0:0,-0.6,-5.8 0|1:1:-2.6,0,-2.4 0|0:0:0,-0.6,-7.2 0|0:0:0,-0.3,-2.8 22 50796545 rs28727897 T A 100 PASS AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0015;LDAF=0.1271;AC=281;THETA=0.0007;RSQ=0.9558;AVGPOST=0.9887;AF=0.13;ASN_AF=0.2;AMR_AF=0.16;AFR_AF=0.07;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.12,-0.61,-3.19 0|1:1:-2.18,-0.01,-1.67 0|0:0:-0.02,-1.45,-5 0|0:0.05:-0.2,-0.45,-2.09 22 50796692 rs145359371 G T 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;LDAF=0.0037;AC=6;VT=SNP;RSQ=0.7357;SNPSOURCE=LOWCOV;AVGPOST=0.9974;AF=0.0027;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-3.32,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.84,-5 22 50797046 rs187770792 G A 100 PASS LDAF=0.0009;RSQ=0.4824;AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-3.59,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.85,-5 22 50797067 rs146440524 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AVGPOST=0.9962;AC=16;VT=SNP;THETA=0.0006;RSQ=0.8156;SNPSOURCE=LOWCOV;LDAF=0.0082;AF=0.01;ASN_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.69,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-2.25,-5 22 50797199 rs115267647 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AC=13;VT=SNP;RSQ=0.9936;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.006;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.62,-5 22 50797256 rs73188928 C A 100 PASS ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9981;VT=SNP;THETA=0.0006;RSQ=0.994;SNPSOURCE=LOWCOV;AC=299;LDAF=0.1367;AF=0.14;ASN_AF=0.02;AMR_AF=0.15;AFR_AF=0.12;EUR_AF=0.23 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:-0.05,-0.94,-5 1|0:1:-5,0,-5 22 50797676 rs190914190 C G 100 PASS AA=C;LDAF=0.012;AN=2184;AVGPOST=0.9914;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=21;RSQ=0.7131;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.16,-0.52,-2.33 1|0:0.95:-0.48,-0.48,-0.48 1|0:0.7:-0.48,-0.48,-0.48 0|0:0.05:-0.11,-0.66,-5 22 50797740 rs140892578 C T 100 PASS AA=C;THETA=0.0002;RSQ=0.7127;AN=2184;ERATE=0.0009;VT=SNP;AC=22;LDAF=0.0122;SNPSOURCE=LOWCOV;AVGPOST=0.9911;AF=0.01;ASN_AF=0.03;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.19,-0.46,-2.32 0|0:0:-0.24,-0.44,-1.16 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.18,-0.46,-2.99 22 50797757 rs183264860 C G 100 PASS ERATE=0.0005;LDAF=0.0036;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9979;RSQ=0.7471;AC=6;VT=SNP;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.24,-0.44,-1.16 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.18,-0.47,-3.07 22 50797874 rs144812546 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.9707;AN=2184;AC=37;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9987;LDAF=0.0175;AF=0.02;ASN_AF=0.05;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.13,-0.58,-3.62 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50797926 rs187975038 A G 100 PASS LDAF=0.0041;AVGPOST=0.9943;AN=2184;VT=SNP;THETA=0.0006;AA=A;RSQ=0.4382;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.32,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.09,-0.73,-4.4 0|0:0:-0.19,-0.46,-2.17 22 50797973 rs28869343 A G 100 PASS AVGPOST=0.9963;LDAF=0.5097;THETA=0.0004;RSQ=0.9945;AA=G;AN=2184;AC=1116;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.51;ASN_AF=0.42;AMR_AF=0.42;AFR_AF=0.86;EUR_AF=0.39 GT:DS:GL 0|1:1:-5,-0,-2.92 1|0:1:-5,-0,-2.03 1|1:2:-5,-2.74,-0 0|0:0:-0.03,-1.19,-5 1|0:1:-5,-0.03,-1.11 22 50798114 rs191970774 G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;AVGPOST=0.9989;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.5959;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-2.84,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.01,-1.85,-5 22 50798134 rs28780804 T C 100 PASS LDAF=0.238;AVGPOST=0.9977;AA=T;AN=2184;VT=SNP;AC=521;RSQ=0.9952;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.24;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.5;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-4.4,-5 0|1:1:-3.74,-0,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-3.42,-5 22 50798212 rs73188929 G A 100 PASS AC=301;ERATE=0.0004;AA=G;AN=2184;RSQ=0.9944;AVGPOST=0.9981;VT=SNP;THETA=0.0006;LDAF=0.1376;SNPSOURCE=LOWCOV;AF=0.14;ASN_AF=0.02;AMR_AF=0.15;AFR_AF=0.13;EUR_AF=0.23 GT:DS:GL 0|1:0.6:-0.01,-1.77,-5 1|0:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:-0.1,-0.68,-4.4 1|0:1:-5,0,-5 22 50798256 rs184574979 A G 100 PASS AN=2184;VT=SNP;RSQ=0.6228;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-3.15,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0,-3.15,-5 22 50798464 . C CT 311 PASS ERATE=0.0097;LDAF=0.1519;THETA=0.0047;RSQ=0.9059;AN=2184;VT=INDEL;AVGPOST=0.9674;AC=317;AF=0.15;ASN_AF=0.03;AMR_AF=0.15;AFR_AF=0.15;EUR_AF=0.23 GT:DS:GL 0|1:1.05:-3.3,-0.3,0 1|0:1:-2.7,0,-2 1|0:1:-5.7,0,-1.7 0|0:0:0,-0.6,-5.2 1|0:1:0,-0.3,-2.5 22 50798585 rs28883654 G A 100 PASS THETA=0.0004;AA=G;AN=2184;LDAF=0.2306;VT=SNP;AC=505;ERATE=0.001;SNPSOURCE=LOWCOV;RSQ=0.9735;AVGPOST=0.9866;AF=0.23;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.49;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0.05:-0.48,-0.48,-0.48 0|1:1:-1.15,-0.39,-0.28 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.21,-0.44,-1.92 22 50798629 rs188540022 G A 100 PASS ERATE=0.0005;AVGPOST=0.9957;AA=G;AN=2184;LDAF=0.0037;VT=SNP;AC=5;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.5122;AF=0.0023;ASN_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.25,-0.4,-1.36 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.22,-0.42,-1.73 22 50798638 rs192907993 C T 100 PASS 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0|0:0:-0.13,-0.59,-3.66 0|0:0:-0.13,-0.6,-3.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-1.95 22 50806667 rs191339054 G A 100 PASS AC=7;AVGPOST=0.9903;LDAF=0.0067;AA=G;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.4329;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.0032;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.13 0|0:0:-0.19,-0.46,-2.41 0|0:0:-0.19,-0.45,-2.15 22 50806735 rs12163472 C T 100 PASS THETA=0.0009;AA=C;AVGPOST=0.9902;AN=2184;RSQ=0.9287;VT=SNP;LDAF=0.0504;SNPSOURCE=LOWCOV;AC=109;ERATE=0.0003;AF=0.05;ASN_AF=0.19;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.16,-0.51,-2.87 0|0:0:-0.12,-0.63,-4 0|0:0:-0.21,-0.43,-1.85 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.48,-0.48,-0.48 22 50806805 rs7511088 T C 100 PASS RSQ=0.9308;AA=C;AN=2184;ERATE=0.0009;AVGPOST=0.9677;VT=SNP;LDAF=0.7856;SNPSOURCE=LOWCOV;AC=1727;THETA=0.0003;AF=0.79;ASN_AF=0.75;AMR_AF=0.69;AFR_AF=0.95;EUR_AF=0.77 GT:DS:GL 0|1:1:-4.1,-0,-5 1|0:0.9:-0.12,-0.62,-3.22 1|1:2:-0.48,-0.48,-0.48 1|1:1.95:-5,-0.88,-0.06 1|1:1.95:-4.22,-0.57,-0.13 22 50806810 rs143713121 G A 100 PASS ERATE=0.0004;LDAF=0.0027;RSQ=0.6889;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9982;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.2,-0.45,-2.14 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.16,-5 0|0:0:-0.16,-0.52,-2.91 22 50806823 rs185573196 C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.5749;THETA=0.0016;LDAF=0.0012;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.15,-0.54,-3.18 0|0:0.05:-0.19,-0.45,-2.14 0|0:0:-0.02,-1.35,-5 0|0:0:-0.24,-0.41,-1.48 22 50806886 rs75156814 C A 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;AC=488;RSQ=0.9912;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9961;LDAF=0.2229;AF=0.22;ASN_AF=0.2;AMR_AF=0.19;AFR_AF=0.44;EUR_AF=0.11 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0.48,-0.48,-0.48 0|1:1:-2.97,-0.48,-0.18 0|0:0:-0.03,-1.22,-5 0|0:0:-0.19,-0.45,-2.13 22 50806888 rs190391002 C G 100 PASS LDAF=0.0013;AA=C;THETA=0.0014;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;RSQ=0.7159;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.11 0|0:0:-0.03,-1.22,-5 0|0:0:-0.19,-0.45,-2.13 22 50806890 rs73439371 G C 100 PASS AC=483;RSQ=0.9917;AVGPOST=0.9966;AA=G;AN=2184;VT=SNP;THETA=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.2209;AF=0.22;ASN_AF=0.2;AMR_AF=0.19;AFR_AF=0.43;EUR_AF=0.11 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.48,-0.48,-0.48 0|1:1:-2.91,-0.48,-0.18 0|0:0:-0.03,-1.2,-5 0|0:0:-0.19,-0.45,-2.12 22 50806894 rs193027691 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.5592;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.07 0|0:0:-0.05,-0.93,-5 0|0:0:-0.19,-0.45,-2.11 22 50807008 rs185134444 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.638;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.98,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.02,-1.27,-5 22 50807016 rs76513894 A G 100 PASS RSQ=0.9479;AN=2184;THETA=0.0005;VT=SNP;AC=51;AA=A;AVGPOST=0.997;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0244;AF=0.02;ASN_AF=0.06;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-2.59,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.06,-0.86,-5 22 50807101 rs189262524 G A 100 PASS AVGPOST=0.9994;RSQ=0.6082;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-1.98,-5 0|0:0:-0.01,-1.87,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0.01,-1.6,-5 22 50807104 rs181186455 C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0013;AA=C;AN=2184;RSQ=0.5398;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.1,-0.7,-4.22 0|0:0:-0.02,-1.4,-5 22 50807243 rs184297382 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.5687;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-3.52,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.56,-5 22 50807271 rs34217450 G GAC 825 PASS AN=2184;AC=480;RSQ=0.9866;VT=INDEL;LDAF=0.2197;THETA=0.0013;AVGPOST=0.9941;ERATE=0.0007;AF=0.22;ASN_AF=0.2;AMR_AF=0.19;AFR_AF=0.43;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-0.3,-3.9 0|0:0:0,0,0 0|1:0.95:0,-0.6,-7.8 0|0:0:0,-0.6,-7.8 0|0:0:0,0,0 22 50807339 rs188161252 T C 100 PASS AA=T;AN=2184;VT=SNP;RSQ=0.6929;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.08,-5 0|0:0:-0,-2.11,-5 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0,-2.66,-5 22 50807423 rs180964810 T C 100 PASS ERATE=0.0005;LDAF=0.0013;THETA=0.0015;RSQ=0.4553;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9982;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.15,-0.55,-1.97 0|0:0:-0.22,-0.42,-1.75 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.04 22 50807615 rs187206991 C T 100 PASS LDAF=0.0052;AA=C;AN=2184;THETA=0.0031;RSQ=0.5039;AC=6;AVGPOST=0.9942;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.2:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.41,-1.5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.46,-2.99 22 50807697 rs192001279 T C 100 PASS ERATE=0.0004;LDAF=0.0024;AA=T;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6199;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.01,-1.54,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.11,-0.67,-5 22 50807733 rs111513845 G GA 990 PASS ERATE=0.0005;LDAF=0.2208;THETA=0.0004;AN=2184;VT=INDEL;RSQ=0.9912;AC=482;AVGPOST=0.996;AF=0.22;ASN_AF=0.2;AMR_AF=0.19;AFR_AF=0.43;EUR_AF=0.12 GT:DS:GL 0|0:0:0,-0.6,-7.2 0|0:0:0,-0.3,-2.4 0|1:1:0,0,0 0|0:0:0,-0.6,-7.2 0|0:0:0,0,0 22 50807755 rs182583081 A G 100 PASS THETA=0.0002;AN=2184;LDAF=0.001;VT=SNP;AA=A;RSQ=0.8965;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-3.14,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.04,-1.09,-5 22 50807770 rs138936534 A G 100 PASS RSQ=0.7939;AN=2184;VT=SNP;THETA=0.0033;AA=A;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.35,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.01,-1.55,-5 22 50807802 rs8135489 T C 100 PASS THETA=0.0015;AA=T;AN=2184;RSQ=0.993;AVGPOST=0.9996;VT=SNP;AC=59;SNPSOURCE=LOWCOV;LDAF=0.0272;ERATE=0.0003;AF=0.03;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-2.8,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.89,-5 22 50807913 rs185773911 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0006;RSQ=0.5747;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.01,-1.94,-5 0|0:0:-0,-2.5,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.01,-1.84,-5 22 50808017 rs10775809 A T 100 PASS RSQ=0.9848;AN=2184;THETA=0.0008;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9926;AC=479;LDAF=0.2187;AF=0.22;ASN_AF=0.2;AMR_AF=0.19;AFR_AF=0.43;EUR_AF=0.11 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.13,-0.58,-2.99 0|1:1:-0.41,-0.45,-0.6 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.07,-0.8,-5 22 50808038 rs142258178 G A 100 PASS ERATE=0.0005;RSQ=0.4358;AA=G;AN=2184;THETA=0.004;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AC=3;LDAF=0.0017;AF=0.0014;ASN_AF=0.0035;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.14,-0.57,-2.94 0|0:0:-0.13,-0.58,-3.42 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.2,-0.45,-2.07 22 50808087 rs7288680 C T 100 PASS AC=62;ERATE=0.0004;AN=2184;RSQ=0.9823;VT=SNP;AA=c;LDAF=0.0287;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9987;AF=0.03;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.12,-0.6,-3.13 0|0:0:-0.14,-0.55,-2.77 0|0:0:-0.19,-0.46,-2.01 0|0:0:-0.2,-0.44,-1.97 22 50808168 rs146381026 T C 100 PASS ERATE=0.0004;THETA=0.0004;AA=T;AN=2184;RSQ=0.9295;VT=SNP;AC=41;LDAF=0.0185;SNPSOURCE=LOWCOV;AVGPOST=0.9965;AF=0.02;ASN_AF=0.06;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4 0|0:0:-0.48,-0.48,-0.48 22 50808249 rs10775810 C T 100 PASS RSQ=0.9848;LDAF=0.2152;AC=472;AA=T;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.993;SNPSOURCE=LOWCOV;THETA=0.0129;AF=0.22;ASN_AF=0.2;AMR_AF=0.19;AFR_AF=0.42;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.03,-1.21,-5 0|1:1:-0.19,-0.45,-2.15 0|0:0:-0.03,-1.15,-5 0|0:0:-0.19,-0.45,-2.13 22 50808398 rs190622297 A G 100 PASS ERATE=0.0005;THETA=0.0004;AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.703;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.04,-1.09,-5 22 50808470 rs60708277 A G 100 PASS ERATE=0.0005;AC=537;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.9801;AVGPOST=0.9892;LDAF=0.2428;AF=0.25;ASN_AF=0.22;AMR_AF=0.21;AFR_AF=0.47;EUR_AF=0.14 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.01,-1.59,-5 0|1:1:-1.13,-0.03,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.04,-1.01,-5 22 50808715 rs139814492 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9983;RSQ=0.8233;AN=2184;VT=SNP;THETA=0.0011;AC=5;SNPSOURCE=LOWCOV;LDAF=0.0031;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.12,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0,-2.58,-5 22 50808772 rs182405231 A G 100 PASS ERATE=0.0004;RSQ=0.8943;AVGPOST=0.9986;LDAF=0.0052;THETA=0.0096;AN=2184;VT=SNP;AC=10;AA=A;SNPSOURCE=LOWCOV;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.13,-0.57,-3.52 0|0:0:-0.04,-1.05,-5 0|0:0:-0.2,-0.44,-2.11 0|0:0:-0.07,-0.82,-5 22 50808773 rs187089990 A G 100 PASS ERATE=0.0005;AVGPOST=0.9985;AN=2184;THETA=0.0038;LDAF=0.0057;VT=SNP;RSQ=0.8834;AA=A;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.13,-0.59,-3.7 0|0:0:-0.04,-1.04,-5 0|0:0:-0.2,-0.44,-2.11 0|0:0:-0.07,-0.82,-5 22 50808773 MERGED_DEL_2_107185 ATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGGAGATGGGATTACAGGCGCCTGCCACCACGCCCAGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGACTGGTCTCGAATGCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCACGCTATGTTTTAAAGAAAAAAGTTTAAAAGTAGGACCTATTTCTTTTTTTCTTTTCATTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCATTGTGCCTCGCTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAATCTTGAACTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCACTGCCCCCAGCCACAAATGTAGGACCTATTTCTAAGAAACCCTTTGTAGAGGTCAGGGTATTGGGAATCCTAATTTAAAAATATTTTTAATCATTATTGGAAATTTAAGTGACAGTGGGTTCAAGAGCTAAACGTCAGACCTTTTTTAAAACAAATTTTATTTTCTGAAGGACTTCATACCTGACAACGCCAATTAAACATAATACTCCACCCATCCTACAAATTATTAAATACATTATTTCACCTGGGACTAGGATAATTATAAAATGGAATTTTAAAGTTGTAATATAGCCAGGCACAGTGGTTTGTGCTTGTAATTCCTGCTACTCAGCAGGCTGTGGCAGGAGGATCACTTGAGGGCTGTAATGTGCTGTGTGAACTGGGTGTCTGCACTAAGTTCGGCATCAGTATGGTGACCTCCCAGAAAAGGAAGACTGCCAGGTTGCCTAAGGAGGTGTGAACCAGCTGAGGTTGGAAATGGAGCACATCAGAAACTCCCATGCTGGTTAGTAGTGGGACTGGAGCTGTGAATAGCTACTGCTCTCCACCCTGGGCAGCATAGTGAGACCCCATCTCTTTAAAAAAGAAAAAAAAAAGAAAACTATCTTAAAATATCATTTTAACTGTCATGTTTGCTAGTTGAATTATGAAATCAAAGACAAATTTTATATTTAAGGGACAGATAATAAATGCTGTTCCATTGCTTTATTTTTAAAATTTTGTAATTGCTTTTTTTTGAGATGGGGTCAGTCTCTGGTCACCCAGGCTGGAGTGCAG A . . HOMSEQ=TGGC;AN=2184;RSQ=0.545;CIPOS=-141,19;AVGPOST=0.9869;LDAF=0.0109;THETA=0.0006;AC=14;HOMLEN=4;END=50810125;SVLEN=-1352;CIEND=-113,40;VT=SV;ERATE=0.002;SVTYPE=DEL;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.82,-31.53 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:-0.01,-1.47,-22 0|0:0:0,0,0 22 50808778 rs190847125 G A 100 PASS ERATE=0.0004;LDAF=0.0021;RSQ=0.8063;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.15,-0.54,-3.18 0|0:0:-0.05,-0.98,-5 0|0:0:-0.2,-0.44,-2.12 0|0:0:-0.07,-0.81,-5 22 50808779 rs182606385 C T 100 PASS THETA=0.0009;LDAF=0.0021;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.791;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.12,-0.61,-3.92 0|0:0:-0.07,-0.85,-5 0|0:0.05:-0.2,-0.44,-2.08 0|0:0:-0.07,-0.8,-5 22 50808786 rs149257167 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;RSQ=0.7439;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9987;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.17,-0.48,-2.53 0|0:0:-0.2,-0.44,-2.12 0|0:0:-0.13,-0.58,-3.47 22 50808802 rs113155514 T C 100 PASS LDAF=0.0597;AVGPOST=0.971;AA=T;AN=2184;VT=SNP;THETA=0.0011;ERATE=0.0043;RSQ=0.8201;AC=117;SNPSOURCE=LOWCOV;AF=0.05;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.2;EUR_AF=0.01 GT:DS:GL 0|0:0.1:-0.1,-0.69,-4.7 0|0:0.2:-0.17,-0.5,-2.49 0|0:0:-0.07,-0.85,-4.22 0|0:0.1:-0.2,-0.44,-2.11 0|0:0:-0.48,-0.48,-0.48 22 50808864 rs188024331 C A 100 PASS ERATE=0.0005;AA=C;AN=2184;LDAF=0.0032;AC=6;VT=SNP;THETA=0.0028;AVGPOST=0.9971;RSQ=0.6194;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.33 0|0:0:-0.11,-0.64,-3.09 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.43,-1.78 22 50808865 rs193095011 T C 100 PASS AVGPOST=0.9789;AC=18;AA=T;AN=2184;VT=SNP;ERATE=0.0038;SNPSOURCE=LOWCOV;RSQ=0.4557;THETA=0.0007;LDAF=0.0146;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.19 0|0:0.15:-0.12,-0.63,-3.05 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.43,-1.78 22 50808906 rs141515200 T C 100 PASS THETA=0.0004;AA=T;AN=2184;ERATE=0.0044;LDAF=0.059;VT=SNP;AC=95;AVGPOST=0.9513;SNPSOURCE=LOWCOV;RSQ=0.6704;AF=0.04;ASN_AF=0.1;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.4:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.42,-1.7 22 50808917 rs12167247 T C 100 PASS AC=163;ERATE=0.0064;AA=T;AN=2184;RSQ=0.7243;VT=SNP;THETA=0.0033;AVGPOST=0.936;SNPSOURCE=LOWCOV;LDAF=0.0895;AF=0.07;ASN_AF=0.03;AMR_AF=0.05;AFR_AF=0.23;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.15:-0.29,-0.44,-0.94 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50808918 rs9616956 A G 100 PASS 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AVGPOST=0.9927;THETA=0.0022;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0006;RSQ=0.6146;LDAF=0.0075;AF=0.01;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.1,-5 0|0:0:-0.21,-0.44,-1.99 0|0:0:-0.45,-0.47,-0.52 0|0:0:-0.18,-0.48,-2.17 0|0:0:-0.48,-0.48,-0.48 22 50808973 rs192231392 C T 100 PASS AA=C;AN=2184;VT=SNP;LDAF=0.0034;RSQ=0.5699;AVGPOST=0.9964;THETA=0.0012;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.2,-0.44,-2.07 0|0:0:-0.35,-0.44,-0.72 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50808996 rs145422594 G A 100 PASS ERATE=0.0004;RSQ=0.7113;AA=G;AN=2184;LDAF=0.0159;THETA=0.0005;VT=SNP;AC=31;AVGPOST=0.9886;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.12,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.41,-0.45,-0.58 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.48,-0.48,-0.48 22 50809006 rs79496165 A G 100 PASS AC=370;AVGPOST=0.9321;ERATE=0.0064;AN=2184;THETA=0.0008;VT=SNP;AA=A;RSQ=0.8416;SNPSOURCE=LOWCOV;LDAF=0.1798;AF=0.17;ASN_AF=0.35;AMR_AF=0.25;AFR_AF=0.02;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.68,-5 0|0:0.05:-0.48,-0.48,-0.48 0|1:1:-2.04,-0.19,-0.46 1|0:0.65:-0.18,-0.48,-2.2 0|0:0.05:-0.48,-0.48,-0.48 22 50809021 rs188696873 A G 100 PASS RSQ=0.5595;ERATE=0.0013;AN=2184;AC=8;VT=SNP;THETA=0.0084;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9932;LDAF=0.006;AF=0.0037;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.19 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50809045 rs8138238 A T 100 PASS ERATE=0.0119;AVGPOST=0.9564;RSQ=0.9202;AA=T;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=590;LDAF=0.2778;AF=0.27;ASN_AF=0.15;AMR_AF=0.26;AFR_AF=0.33;EUR_AF=0.33 GT:DS:GL 0|1:1:-0.62,-0.12,-5 1|0:1.1:-5,-0.72,-0.09 1|1:1.75:-5,-0.62,-0.12 1|0:0.7:-0.18,-0.48,-2.21 1|0:1:-0.48,-0.48,-0.48 22 50809089 rs180720672 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.511;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.17,-0.5,-2.45 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.19,-0.45,-2.13 22 50809099 rs147838603 G A 100 PASS LDAF=0.0365;AA=G;AN=2184;RSQ=0.9674;THETA=0.0005;VT=SNP;AC=79;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0003;AF=0.04;ASN_AF=0.08;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.58,-5 0|0:0:-0.2,-0.45,-2.15 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.2,-0.44,-2.01 22 50809132 rs111873272 G A 100 PASS RSQ=0.5407;LDAF=0.0058;AA=G;AN=2184;AC=6;VT=SNP;THETA=0.0017;AVGPOST=0.9938;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.23,-0.42,-1.48 0|0:0:-0.48,-0.48,-0.48 22 50809144 rs189561703 C G 100 PASS THETA=0.0015;AN=2184;AC=8;VT=SNP;AA=c;RSQ=0.592;SNPSOURCE=LOWCOV;LDAF=0.0048;ERATE=0.0006;AVGPOST=0.9951;AF=0.0037;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50809148 rs182021767 T C 100 PASS AC=12;THETA=0.0015;LDAF=0.0092;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0012;RSQ=0.537;AVGPOST=0.9887;AF=0.01;ASN_AF=0.0035;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50809238 rs140392469 T A 100 PASS LDAF=0.0281;AA=T;AN=2184;THETA=0.0008;RSQ=0.9229;VT=SNP;SNPSOURCE=LOWCOV;AC=60;ERATE=0.0003;AVGPOST=0.9941;AF=0.03;ASN_AF=0.1;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.22,-0.42,-1.82 0|0:0:-0.01,-1.67,-5 0|0:0:-0.11,-0.65,-4 0|0:0:-0.11,-0.66,-4.7 22 50809341 rs186313347 G A 100 PASS AA=G;AN=2184;RSQ=0.2777;AVGPOST=0.9962;THETA=0.0008;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0.12,-0.61,-3.92 0|0:0:-0.04,-1.07,-5 0|0:0:-0.19,-0.46,-2.06 0|0:0:-0.02,-1.28,-5 22 50809364 . AATGT A 378 PASS AN=2184;AVGPOST=0.9934;VT=INDEL;THETA=0.0028;LDAF=0.0629;AC=138;RSQ=0.9606;ERATE=0.0007;AF=0.06;AMR_AF=0.02;AFR_AF=0.24;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-1.8,-50.4 0|0:0:0,-0.6,-12.4 0|0:0:0,-1.2,-31.1 0|0:0:0,-0.6,-16.8 0|0:0:0,-0.3,-8.4 22 50809408 rs112112522 A T 100 PASS THETA=0.0004;RSQ=0.9056;LDAF=0.0103;AN=2184;VT=SNP;AA=A;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AC=21;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.11,-0.64,-4.22 0|0:0.15:-1.61,-0.01,-2.99 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.38,-5 22 50809482 rs8141888 G A 100 PASS AN=2184;VT=SNP;AC=587;AA=A;RSQ=0.9915;SNPSOURCE=LOWCOV;AVGPOST=0.9955;ERATE=0.0006;LDAF=0.2687;THETA=0.0034;AF=0.27;ASN_AF=0.21;AMR_AF=0.22;AFR_AF=0.34;EUR_AF=0.29 GT:DS:GL 0|1:1:-5,-0.67,-0.1 1|0:1:-5,-0,-4.22 1|0:1:-2.7,-0,-5 0|0:0:-0,-2.25,-5 1|0:1:-5,-0.07,-0.8 22 50809687 rs8136402 T C 100 PASS ERATE=0.0004;LDAF=0.2928;AVGPOST=0.9983;AN=2184;AC=640;VT=SNP;RSQ=0.9965;SNPSOURCE=LOWCOV;THETA=0.0013;AA=t;AF=0.29;ASN_AF=0.21;AMR_AF=0.23;AFR_AF=0.43;EUR_AF=0.3 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:-0,-2.06,-5 1|0:1:-5,0,-5 22 50809749 rs150413877 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=10;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.0051;RSQ=0.8931;AF=0.0046;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0,-2.77,-5 0|0:0:-0,-2.68,-5 22 50809766 rs190386348 C T 100 PASS RSQ=0.598;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9984;AC=2;LDAF=0.0017;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0,-2.36,-5 0|0:0:-0,-2.18,-5 22 50810064 rs181559035 A G 100 PASS AN=2184;LDAF=0.001;VT=SNP;AA=A;RSQ=0.524;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.19,-0.46,-2.23 0|0:0:-0.04,-1.06,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.48,-0.48,-0.48 22 50810102 rs145171819 C T 100 PASS ERATE=0.0004;RSQ=0.5707;LDAF=0.0013;AA=C;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0013;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.08,-0.78,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.2,-0.44,-1.99 22 50810125 rs185306031 G A 100 PASS AC=28;AVGPOST=0.9827;AA=G;AN=2184;VT=SNP;THETA=0.0006;ERATE=0.0039;LDAF=0.0167;SNPSOURCE=LOWCOV;RSQ=0.5994;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0.05:-0.09,-0.74,-3.85 0|0:0:-0.05,-1,-5 0|0:0.05:-0.1,-0.68,-4 0|0:0:-0.2,-0.44,-2 22 50810132 rs12168211 G C 100 PASS THETA=0.0004;RSQ=0.9742;AA=G;AN=2184;ERATE=0.0009;LDAF=0.0912;VT=SNP;SNPSOURCE=LOWCOV;AC=197;AVGPOST=0.9937;AF=0.09;AMR_AF=0.03;AFR_AF=0.35;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.09,-0.75,-3.92 0|0:0.05:-0.05,-0.99,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.2,-0.44,-2 22 50810191 rs191141948 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9967;VT=SNP;LDAF=0.0023;THETA=0.0012;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;RSQ=0.4326;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.13,-0.58,-3.52 0|0:0:-0.12,-0.63,-3.85 0|0:0:-0.48,-0.48,-0.48 22 50810337 rs183456089 A T 100 PASS LDAF=0.0009;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5571;SNPSOURCE=LOWCOV;AC=1;AA=a;ERATE=0.0003;AVGPOST=0.9992;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.35,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.02,-1.38,-5 22 50810413 rs187530807 A G 100 PASS AN=2184;VT=SNP;THETA=0.0018;AA=A;LDAF=0.0007;RSQ=0.6963;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.63,-5 22 50810472 rs78649731 C G 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;AC=45;VT=SNP;LDAF=0.0223;AVGPOST=0.9959;SNPSOURCE=LOWCOV;RSQ=0.9318;AF=0.02;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.11,-0.66,-4.7 22 50810561 rs142095358 C G 100 PASS LDAF=0.0009;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9991;RSQ=0.5441;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-3.32,-5 0|0:0:0,-5,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.94,-5 22 50810679 rs73188939 C T 100 PASS AA=C;AC=293;LDAF=0.1349;AN=2184;AVGPOST=0.9975;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9921;THETA=0.0003;AF=0.13;ASN_AF=0.03;AMR_AF=0.15;AFR_AF=0.12;EUR_AF=0.21 GT:DS:GL 0|1:1:-5,-1.16,-0.03 1|0:1:-1.62,-0.01,-5 1|0:1:-3.7,-0,-5 0|0:0:-0.02,-1.45,-5 1|0:1:-2.44,-0,-2.27 22 50810828 rs191169904 A C 100 PASS ERATE=0.0005;AN=2184;VT=SNP;LDAF=0.0026;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;RSQ=0.3981;AVGPOST=0.9958;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0.1:-0.12,-0.61,-3.15 0|0:0:-0.14,-0.56,-3.38 0|0:0:-0.05,-0.93,-5 0|0:0:-0.08,-0.8,-5 22 50810839 rs8139075 A G 100 PASS LDAF=0.493;AA=G;AN=2184;ERATE=0.0025;AC=1081;RSQ=0.9699;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9764;AF=0.49;ASN_AF=0.41;AMR_AF=0.41;AFR_AF=0.83;EUR_AF=0.38 GT:DS:GL 0|1:1:-5,-0.65,-0.11 1|0:1:-2.08,-0.02,-1.48 1|1:1.85:-0.24,-0.41,-1.51 0|0:0.4:-0.1,-0.68,-4 1|0:1:-4.7,-0.67,-0.1 22 50810900 rs8141303 T C 100 PASS RSQ=0.9819;AA=C;AN=2184;AC=612;VT=SNP;AVGPOST=0.9909;SNPSOURCE=LOWCOV;ERATE=0.0012;LDAF=0.2799;THETA=0.0003;AF=0.28;ASN_AF=0.2;AMR_AF=0.23;AFR_AF=0.42;EUR_AF=0.27 GT:DS:GL 0|1:1:-5,-0,-3.47 1|0:1:-0.48,-0.48,-0.48 1|0:1:-0.14,-0.55,-3.27 0|0:0:-0.03,-1.16,-5 1|0:1:-0.48,-0.48,-0.48 22 50810999 rs141999025 A G 100 PASS AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;AA=A;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8043;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.06,-0.86,-5 22 50811100 rs150726560 C A 100 PASS AA=C;LDAF=0.0016;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.6898;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.07,-0.82,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.11,-0.66,-4.7 22 50811113 rs139007703 A T 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.5006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9984;LDAF=0.0012;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.16,-0.53,-2.52 0|0:0:-0.03,-1.18,-5 0|0:0:-0.11,-0.64,-4.7 22 50811184 rs113754609 C A 100 PASS AC=293;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.9852;LDAF=0.1345;AA=c;AVGPOST=0.9959;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.13;ASN_AF=0.03;AMR_AF=0.15;AFR_AF=0.12;EUR_AF=0.21 GT:DS:GL 0|1:1:-1.81,-0.01,-3.74 1|0:1:-0.12,-0.61,-3.92 1|0:1:-0.14,-0.56,-3.32 0|0:0:-0.48,-0.48,-0.48 1|0:1:-3.17,-0.49,-0.17 22 50811210 rs183267699 C T 100 PASS RSQ=0.8439;AN=2184;LDAF=0.0037;AC=6;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9982;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.12,-0.62,-4 0|0:0:-0.04,-1.06,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.12 22 50811211 rs187988848 G A 100 PASS AA=g;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.0051;AC=32;SNPSOURCE=LOWCOV;AVGPOST=0.978;LDAF=0.021;RSQ=0.5796;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 1|0:1:-5,-0.7,-0.1 0|0:0.15:-0.04,-1.09,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.16 22 50811358 rs12158541 C T 100 PASS THETA=0.0032;AN=2184;LDAF=0.2526;VT=SNP;RSQ=0.965;AC=546;ERATE=0.0019;AVGPOST=0.9833;SNPSOURCE=LOWCOV;AA=N;AF=0.25;ASN_AF=0.16;AMR_AF=0.22;AFR_AF=0.35;EUR_AF=0.27 GT:DS:GL 0|1:1:-2.07,-0.01,-1.69 1|0:1:-0.15,-0.54,-3.13 1|0:1:-2.21,-0.01,-1.61 0|0:0:-0.09,-0.72,-4.4 1|0:1:-2.54,-0.06,-0.93 22 50811395 rs140511926 C T 100 PASS AN=2184;LDAF=0.0637;THETA=0.0008;VT=SNP;RSQ=0.9853;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0006;AA=N;AC=139;AF=0.06;AMR_AF=0.02;AFR_AF=0.24;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.24,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.25,-0.4,-1.35 22 50811396 rs144464105 G C 100 PASS ERATE=0.0004;LDAF=0.0027;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.5918;AA=N;AC=3;AVGPOST=0.9974;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.37,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.48,-0.48,-0.48 22 50811468 rs191975564 A G 100 PASS THETA=0.0002;RSQ=0.8255;LDAF=0.0016;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0,-2.66,-5 22 50811515 rs8143155 A G 100 PASS ERATE=0.0004;RSQ=0.862;AN=2184;AC=6;VT=SNP;THETA=0.0006;AVGPOST=0.9991;LDAF=0.0029;SNPSOURCE=LOWCOV;AA=a;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.1,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-4.22,-5 22 50811592 rs147822134 T C 100 PASS ERATE=0.0004;AN=2184;RSQ=0.4979;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AA=t;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.52,-5 0|0:0:-0,-2.53,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.93,-5 22 50811620 rs76028323 T C 100 PASS AC=18;THETA=0.0004;AN=2184;RSQ=0.8973;LDAF=0.0084;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0003;AA=t;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.06,-5 22 50811661 . ATTTC A 119 PASS RSQ=0.8763;LDAF=0.026;THETA=0.0004;AN=2184;VT=INDEL;AC=58;AVGPOST=0.9915;ERATE=0.0006;AF=0.03;ASN_AF=0.09;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.3,-5.8 0|0:0:0,0,0 0|0:0:0,-0.3,-2.6 0|0:0:0,-0.3,-5.3 0|0:0:0,0,0 22 50811819 rs188829536 C T 100 PASS ERATE=0.0004;AN=2184;AC=6;THETA=0.0008;VT=SNP;RSQ=0.7194;AA=c;AVGPOST=0.9973;LDAF=0.0039;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.24,-0.44,-1.16 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.05 22 50811827 rs148491370 C T 100 PASS AC=7;AN=2184;AVGPOST=0.9924;RSQ=0.5273;THETA=0.0005;VT=SNP;AA=c;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0.05:-0.14,-0.55,-2.67 0|0:0.5:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.64,-4 0|0:0:-0.08,-0.76,-5 22 50811831 rs192627550 C T 100 PASS ERATE=0.0005;RSQ=0.6292;AN=2184;VT=SNP;LDAF=0.0034;AA=c;AVGPOST=0.9969;THETA=0.0012;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-3.92 0|0:0:-0.07,-0.81,-5 22 50811907 rs185009881 C T 100 PASS AC=12;LDAF=0.0092;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.4889;AA=c;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9876;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.41,-1.38 0|0:0.15:-0.48,-0.48,-0.48 22 50811919 rs56929421 G A 100 PASS THETA=0.0009;AC=112;LDAF=0.0524;AA=g;AN=2184;AVGPOST=0.9914;ERATE=0.0009;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9427;AF=0.05;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.21 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.14 0|0:0:-0.48,-0.48,-0.48 22 50811961 rs189028807 C T 100 PASS AVGPOST=0.9985;THETA=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AA=c;RSQ=0.5471;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.64,-4 22 50812007 rs111769766 G T 100 PASS AA=G;AN=2184;RSQ=0.9373;AVGPOST=0.999;VT=SNP;AC=14;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0069;THETA=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-2.11,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.48,-0.48,-0.48 22 50812086 rs67980306 A T 100 PASS ERATE=0.0004;LDAF=0.2835;AA=T;AN=2184;THETA=0.0008;VT=SNP;AC=620;AVGPOST=0.998;RSQ=0.9956;SNPSOURCE=LOWCOV;AF=0.28;ASN_AF=0.21;AMR_AF=0.23;AFR_AF=0.43;EUR_AF=0.27 GT:DS:GL 0|1:1:-5,-0,-2.73 1|0:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:-0,-3.42,-5 1|0:0.95:-0.02,-1.34,-5 22 50812134 rs192754882 C A 100 PASS AA=C;THETA=0.0004;AN=2184;LDAF=0.0018;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4798;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.07,-0.82,-5 22 50812169 . G GT 78 PASS THETA=0.0002;RSQ=0.6169;LDAF=0.0276;AN=2184;VT=INDEL;ERATE=0.0062;AVGPOST=0.9742;AC=42;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.9,-7.8 0|0:0:0,-0.5,-3.2 0|0:0:0,0,0 0|0:0:0,-0.6,-5.2 0|0:0:0,0,0 22 50812199 rs151040168 G T 100 PASS RSQ=0.7987;AA=G;AN=2184;AVGPOST=0.9979;LDAF=0.004;VT=SNP;AC=9;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.77,-5 22 50812238 rs184522905 C T 100 PASS ERATE=0.0004;LDAF=0.0021;AA=C;AN=2184;RSQ=0.5208;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.19,-0.46,-2.38 0|0:0:-0.13,-0.58,-3.42 22 50812367 rs12158890 T C 100 PASS LDAF=0.283;AA=T;AN=2184;VT=SNP;AC=620;AVGPOST=0.9953;ERATE=0.0008;RSQ=0.9907;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.28;ASN_AF=0.21;AMR_AF=0.23;AFR_AF=0.43;EUR_AF=0.27 GT:DS:GL 0|1:1:-4.1,-0,-5 1|0:1:-2.03,-0.01,-2.53 1|0:0.95:-0.06,-0.87,-5 0|0:0:-0,-2,-5 1|0:0.95:-0.2,-0.44,-2.03 22 50812456 rs146830798 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0019;RSQ=0.3714;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.05,-1,-5 0|0:0.05:-0.07,-0.84,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.07,-0.83,-5 22 50812604 rs79125300 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.0046;AVGPOST=0.999;VT=SNP;AC=10;RSQ=0.9084;THETA=0.0006;SNPSOURCE=LOWCOV;AF=0.0046;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.58,-5 22 50812707 rs116093398 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=45;RSQ=0.9783;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.021;THETA=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.35,-5 0|0:0:-0.05,-1.01,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.08,-5 0|0:0:-0.11,-0.65,-4.7 22 50812723 rs117340146 C T 100 PASS ERATE=0.0004;AC=30;RSQ=0.951;AA=C;AN=2184;AVGPOST=0.9981;THETA=0.0005;VT=SNP;LDAF=0.0147;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.05;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.04,-1.08,-5 22 50812724 rs114824019 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=49;LDAF=0.0239;VT=SNP;AVGPOST=0.9959;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.9402;AF=0.02;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.08,-0.8,-5 0|0:0:-0.13,-0.59,-3.62 0|0:0.3:-0.09,-0.73,-4.7 0|0:0:-0.04,-1.07,-5 22 50812792 rs76678861 A G 100 PASS 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THETA=0.0004;AA=T;AN=2184;RSQ=0.9836;AC=29;VT=SNP;LDAF=0.0134;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-3.4,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.03,-1.13,-5 22 50813788 rs76208846 C T 100 PASS RSQ=0.9313;AA=C;THETA=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.83,-5 22 50813913 rs149224511 C G 100 PASS AC=7;AA=C;AN=2184;LDAF=0.0032;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9865;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.01,-1.81,-5 22 50813932 rs115074754 C G 100 PASS AC=7;RSQ=0.9551;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0034;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 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A G 100 PASS LDAF=0.2829;AA=G;AN=2184;AC=618;VT=SNP;AVGPOST=0.9976;THETA=0.0006;RSQ=0.9949;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.28;ASN_AF=0.21;AMR_AF=0.23;AFR_AF=0.43;EUR_AF=0.27 GT:DS:GL 0|1:1:-0.48,-0.48,-0.48 1|0:1:-3.92,-0,-5 1|0:1:-1.59,-0.01,-5 0|0:0:-0.18,-0.48,-2.21 1|0:0.95:-0.04,-1.11,-5 22 50814324 rs185853195 C T 100 PASS ERATE=0.0005;RSQ=0.3887;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9974;THETA=0.0003;LDAF=0.0017;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.04,-1.1,-5 22 50814350 rs147983905 A C 100 PASS ERATE=0.0005;AN=2184;LDAF=0.0125;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=27;THETA=0.0007;RSQ=0.9158;AVGPOST=0.9974;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.16,-0.51,-2.9 0|0:0:-0.03,-1.16,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.08,-0.8,-5 22 50814524 rs7290471 A G 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=1095;RSQ=0.9853;SNPSOURCE=LOWCOV;ERATE=0.0012;LDAF=0.5003;AVGPOST=0.9892;AF=0.5;ASN_AF=0.41;AMR_AF=0.42;AFR_AF=0.85;EUR_AF=0.39 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|1:1.9:-5,-0.23,-0.39 1|0:1:-2.89,-0.46,-0.19 1|0:1:-4.7,-0,-4.22 22 50814690 rs7284088 T C 100 PASS AA=T;AN=2184;AC=6;THETA=0.0008;VT=SNP;LDAF=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9371;AVGPOST=0.9995;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.11,-0.63,-4.1 0|0:0:-0.01,-1.49,-5 0|0:0:-0.09,-0.71,-5 0|0:0:-0.05,-0.98,-5 22 50814695 rs181222958 G A 100 PASS ERATE=0.0004;LDAF=0.0013;THETA=0.0023;AA=G;AN=2184;RSQ=0.4638;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9982;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.16,-0.5,-2.53 0|0:0:-0.01,-1.55,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.05,-0.99,-5 22 50814772 rs186623389 A T 100 PASS ERATE=0.0004;AN=2184;LDAF=0.0032;AC=6;VT=SNP;AA=A;AVGPOST=0.9991;RSQ=0.8936;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.0027;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.59,-5 22 50814859 rs147140206 T C 100 PASS LDAF=0.0024;AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;RSQ=0.8878;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.12,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.19,-0.46,-2.17 22 50814870 rs190679742 A C 100 PASS THETA=0.0004;AN=2184;AVGPOST=0.9997;LDAF=0.0015;VT=SNP;AA=A;RSQ=0.9064;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0,-2.12,-5 0|0:0:-0.18,-0.48,-2.22 0|0:0:-0.11,-0.64,-4 22 50814884 rs182316011 C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6347;ERATE=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.12,-0.63,-3.92 22 50815104 rs73188943 C T 100 PASS ERATE=0.0005;RSQ=0.9892;AVGPOST=0.9963;AA=C;AN=2184;THETA=0.004;VT=SNP;AC=348;SNPSOURCE=LOWCOV;LDAF=0.1607;AF=0.16;ASN_AF=0.08;AMR_AF=0.17;AFR_AF=0.15;EUR_AF=0.22 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-1.47,-0.01,-5 1|0:1:-5,-0.01,-1.62 0|0:0:-0.11,-0.66,-4.22 1|0:0.95:-0.12,-0.62,-3.85 22 50815250 rs138767433 C G 100 PASS AVGPOST=0.9986;AA=C;AN=2184;RSQ=0.9691;LDAF=0.0208;VT=SNP;AC=44;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.02;ASN_AF=0.05;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.14,-0.56,-3.34 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50815300 rs142744947 C G 100 PASS ERATE=0.0004;AVGPOST=0.9985;RSQ=0.7892;AA=C;LDAF=0.0035;AN=2184;AC=6;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.76,-5 0|0:0:-0.21,-0.44,-1.74 0|0:0:-0.48,-0.48,-0.48 22 50815348 rs186314149 C T 100 PASS AVGPOST=0.9912;AN=2184;ERATE=0.0009;THETA=0.0005;RSQ=0.5081;VT=SNP;LDAF=0.0072;AA=c;AC=9;SNPSOURCE=LOWCOV;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.4:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-3.92 0|0:0:-0.48,-0.48,-0.48 22 50815407 rs191010687 G C 100 PASS AVGPOST=0.9957;AA=G;AN=2184;LDAF=0.0032;RSQ=0.4993;AC=6;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0027;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50815450 rs183489995 C T 100 PASS ERATE=0.0005;AA=C;LDAF=0.0042;AN=2184;AC=8;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9974;RSQ=0.7364;AF=0.0037;ASN_AF=0.0035;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0.2,-0.44,-2.02 0|0:0:-0.22,-0.42,-1.69 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.2,-0.45,-2.11 22 50815559 rs188303479 C T 100 PASS LDAF=0.0009;AA=C;THETA=0.0004;AN=2184;RSQ=0.6006;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-3.42,-5 22 50815574 rs147410128 A G 100 PASS AVGPOST=0.9985;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0026;AA=A;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.7958;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.38,-5 0|0:0:-0,-2.1,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-4.7,-5 22 50815606 rs193168609 G A 100 PASS AA=G;AN=2184;LDAF=0.0018;AVGPOST=0.9996;VT=SNP;RSQ=0.9097;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0,-2,-5 0|0:0:-0,-3.34,-5 22 50815873 rs182847635 A G 100 PASS AN=2184;AC=6;THETA=0.0005;AVGPOST=0.9996;VT=SNP;AA=A;LDAF=0.0029;SNPSOURCE=LOWCOV;RSQ=0.9411;ERATE=0.0003;AF=0.0027;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.58,-5 22 50815903 rs7287079 G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=194;LDAF=0.0888;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9974;AVGPOST=0.9995;AF=0.09;ASN_AF=0.09;AMR_AF=0.04;AFR_AF=0.24;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.53,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0,-2.91,-5 0|0:0:-0,-2.87,-5 22 50816059 rs139128192 G C 100 PASS AA=G;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.552;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-3.08,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-3.62,-5 22 50816128 rs149959130 G T 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.5599;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-3.17,-5 0|0:0:-0.07,-0.8,-5 22 50816305 rs6520143 A G 100 PASS AC=614;THETA=0.0009;ERATE=0.0005;AN=2184;LDAF=0.2803;AVGPOST=0.9975;VT=SNP;SNPSOURCE=LOWCOV;AA=a;RSQ=0.995;AF=0.28;ASN_AF=0.21;AMR_AF=0.23;AFR_AF=0.42;EUR_AF=0.27 GT:DS:GL 0|1:1:-5,-1.12,-0.03 1|0:1:-0.19,-0.45,-2.21 1|0:0.9:-0.03,-1.16,-5 0|0:0:-0.1,-0.68,-4.4 1|0:1:-5,-0.03,-1.17 22 50816307 rs117122251 G A 100 PASS ERATE=0.0004;LDAF=0.0086;AA=G;AN=2184;AVGPOST=0.9952;AC=16;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7914;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.2,-0.44,-2.02 0|0:0:-0.03,-1.13,-5 0|0:0:-0.1,-0.69,-4.4 0|0:0:-0.07,-0.83,-5 22 50816398 rs117800321 C T 100 PASS THETA=0.0009;AA=C;AVGPOST=0.9994;AN=2184;AC=45;LDAF=0.0208;VT=SNP;RSQ=0.9863;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.07,-0.8,-5 22 50816480 rs79063910 A T 100 PASS AC=12;LDAF=0.0052;AN=2184;THETA=0.0008;AVGPOST=0.999;VT=SNP;AA=A;SNPSOURCE=LOWCOV;RSQ=0.9309;ERATE=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.87,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.83,-5 22 50816619 rs7511047 A G 100 PASS ERATE=0.0005;AA=G;AN=2184;LDAF=0.308;THETA=0.0005;VT=SNP;RSQ=0.9923;AVGPOST=0.9959;AC=673;SNPSOURCE=LOWCOV;AF=0.31;ASN_AF=0.21;AMR_AF=0.29;AFR_AF=0.42;EUR_AF=0.32 GT:DS:GL 0|1:1:-4.7,-0,-3.27 1|0:1:-0.91,-0.06,-5 1|0:0.95:-0.79,-0.08,-5 0|1:0.8:-0.05,-0.94,-5 1|1:2:-5,-2.11,-0 22 50816631 rs75998831 A G 100 PASS AC=105;AN=2184;VT=SNP;AA=A;RSQ=0.9956;LDAF=0.0482;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.05;AMR_AF=0.02;AFR_AF=0.2 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.37,-5 0|0:0:-0,-3.14,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-4.4,-5 22 50816691 rs148689711 T C 100 PASS ERATE=0.0004;AVGPOST=0.9977;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.5553;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.81,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.02,-1.31,-5 22 50816813 rs78400531 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;RSQ=0.8832;AN=2184;AVGPOST=0.9972;AC=20;VT=SNP;LDAF=0.0099;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.15,-0.55,-3.19 0|0:0:-0.06,-0.89,-5 0|0:0:-0.2,-0.45,-2.06 22 50816866 rs12158353 T G 100 PASS AVGPOST=0.9977;RSQ=0.9901;AA=T;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=195;ERATE=0.0006;LDAF=0.0895;AF=0.09;ASN_AF=0.09;AMR_AF=0.04;AFR_AF=0.24;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.2,-0.44,-2.09 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.22,-0.4,-2.06 22 50816875 rs188272551 C T 100 PASS AC=7;THETA=0.0009;ERATE=0.0005;AVGPOST=0.9985;AA=C;AN=2184;VT=SNP;LDAF=0.0038;SNPSOURCE=LOWCOV;RSQ=0.8267;AF=0.0032;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.21,-0.43,-1.91 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-3.92 0|0:0:-0.2,-0.43,-2.52 22 50817006 rs111817105 A ACTCT 882 PASS RSQ=0.9813;AVGPOST=0.9902;AN=2184;ERATE=0.0009;VT=INDEL;THETA=0.0005;LDAF=0.2753;AC=604;AF=0.28;ASN_AF=0.2;AMR_AF=0.23;AFR_AF=0.42;EUR_AF=0.27 GT:DS:GL 0|1:1:-30.6,0,-4.1 1|0:1:0,0,0 1|0:0.85:0,-0.6,-11 0|0:0:0,-0.9,-16.8 1|0:1:-8,-0.3,0 22 50817116 rs116264025 C G 100 PASS ERATE=0.0005;AA=C;RSQ=0.9017;THETA=0.0004;AN=2184;VT=SNP;AC=9;AVGPOST=0.9991;LDAF=0.0044;SNPSOURCE=LOWCOV;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0.1:-0.12,-0.62,-3.19 0|0:0:-0.04,-1.05,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.07,-0.85,-5 22 50817144 . A AC 245 PASS AC=539;AVGPOST=0.9767;AN=2184;VT=INDEL;ERATE=0.003;LDAF=0.2471;THETA=0.0013;RSQ=0.9539;AF=0.25;ASN_AF=0.16;AMR_AF=0.2;AFR_AF=0.4;EUR_AF=0.24 GT:DS:GL 0|1:1:-12.4,-0.9,0 1|0:1:0,0,0 1|0:1:-1.8,0,-2.5 0|0:0.05:0,0,0 1|0:1:0,0,0 22 50817345 rs191119346 A G 100 PASS AN=2184;RSQ=0.4576;LDAF=0.0015;VT=SNP;AVGPOST=0.998;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.07,-0.86,-5 0|0:0:-0,-2.36,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.11,-0.64,-4.1 22 50817374 rs140625444 T G 100 PASS ERATE=0.0004;LDAF=0.0009;THETA=0.0004;AA=T;AN=2184;RSQ=0.5711;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0,-2.35,-5 0|0:0:-0,-2,-5 0|0:0:-0,-2.89,-5 22 50817414 rs144264227 T C 100 PASS ERATE=0.0004;LDAF=0.0013;AVGPOST=0.9983;AA=T;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5505;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.85,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2,-5 0|0:0:-0,-3.7,-5 22 50817441 . AC A 267 PASS ERATE=0.0004;THETA=0.0004;AN=2184;LDAF=0.0124;VT=INDEL;AVGPOST=0.9996;AC=27;RSQ=0.9841;AF=0.01;ASN_AF=0.05;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-0.3,-4.8 0|0:0:0,-1.8,-28.5 0|0:0:0,-0.6,-9.5 0|0:0:0,-0.3,-4.8 0|0:0:0,-2.4,-36.3 22 50817460 rs183592446 T G 100 PASS THETA=0.0009;AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;AC=0;SNPSOURCE=LOWCOV;LDAF=0.0002;ERATE=0.0003;RSQ=0.1854;AF=0 GT:DS:GL 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0.01,-1.59,-5 0|0:0:-0,-2.11,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.06,-0.86,-5 22 50817485 rs7284516 T G 100 PASS AA=T;AN=2184;RSQ=0.9957;VT=SNP;THETA=0.0006;LDAF=0.0908;AVGPOST=0.9991;AC=198;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.09;ASN_AF=0.09;AMR_AF=0.04;AFR_AF=0.25;EUR_AF=0.02 GT:DS:GL 0|0:0.05:-0.16,-0.51,-2.87 0|0:0:-0,-3.09,-5 0|0:0:-0,-2.61,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.11,-0.64,-4.1 22 50817675 rs188336273 A G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.6409;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.69,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.6,-5 22 50817702 rs192411869 A T 100 PASS ERATE=0.0005;AVGPOST=0.9994;AN=2184;RSQ=0.7632;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.84,-5 22 50817754 rs151094468 G A 100 PASS ERATE=0.0004;THETA=0.0022;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;LDAF=0.0011;SNPSOURCE=LOWCOV;RSQ=0.6388;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.57,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.7 22 50817775 rs185825620 A T 100 PASS THETA=0.0004;AN=2184;RSQ=0.8216;VT=SNP;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.66,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.07,-0.8,-5 0|0:0.05:-0.18,-0.48,-2.22 0|0:0:-0.19,-0.46,-2.98 22 50817776 rs189860179 A T 100 PASS AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AC=2;RSQ=0.6835;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.07,-0.8,-5 0|0:0:-0.18,-0.48,-2.22 0|0:0:-0.19,-0.46,-2.97 22 50817789 rs115990446 G A 100 PASS LDAF=0.0067;THETA=0.0004;AA=G;AN=2184;AC=13;RSQ=0.8976;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0.11,-0.65,-4.7 22 50818016 rs141022620 T G 100 PASS AVGPOST=0.9985;LDAF=0.0088;THETA=0.0004;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9354;ERATE=0.0003;AC=19;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.02,-1.26,-5 0|0:0:-0,-2.36,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.64,-5 22 50818068 rs182069182 T A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;RSQ=0.7822;SNPSOURCE=LOWCOV;THETA=0.001;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.29,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.01,-1.63,-5 22 50818084 rs117865134 G C 100 PASS RSQ=0.9881;AA=G;AN=2184;VT=SNP;AC=51;AVGPOST=0.9993;THETA=0.0017;LDAF=0.0235;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.19,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.59,-5 22 50818133 rs186172855 A T 100 PASS ERATE=0.0004;AN=2184;RSQ=0.5372;AVGPOST=0.999;LDAF=0.001;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.38,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.12,-0.61,-4.7 22 50818161 rs114881038 T C 100 PASS THETA=0.0009;AA=T;AN=2184;VT=SNP;AC=38;SNPSOURCE=LOWCOV;RSQ=0.9376;AVGPOST=0.9968;ERATE=0.0003;LDAF=0.0188;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.2,-0.44,-2.05 0|0:0:-0.02,-1.26,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.07,-0.85,-5 22 50818226 rs189888590 G A 100 PASS AC=12;ERATE=0.0004;THETA=0.0015;RSQ=0.919;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0059;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.03,-1.25,-5 0|0:0.05:-0.19,-0.45,-2.16 0|0:0:-0.02,-1.37,-5 0|0:0:-0.05,-1.01,-5 22 50818236 rs74664523 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=45;RSQ=0.9836;LDAF=0.0208;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9992;AF=0.02;ASN_AF=0.03;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0.05:-0.04,-1.05,-5 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.02,-1.44,-5 0|0:0:-0.03,-1.24,-5 22 50818245 rs150272161 A G 100 PASS 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A AAAAC 321 PASS ERATE=0.0124;AN=2184;VT=INDEL;THETA=0.0005;LDAF=0.1656;RSQ=0.7138;AC=303;AVGPOST=0.8962;AF=0.14;ASN_AF=0.15;AMR_AF=0.1;AFR_AF=0.26;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-0.6,-8.5 1|0:0.65:-1.3,-0.3,0 0|0:0.45:0,0,0 0|0:0.5:-1.2,0,-2.4 0|0:0.45:0,0,0 22 50822568 rs149793178 G T 100 PASS AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0006;RSQ=0.7905;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-2.59,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0,-4.22,-5 22 50822657 rs73188949 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AVGPOST=0.9979;LDAF=0.268;THETA=0.0008;VT=SNP;RSQ=0.9952;SNPSOURCE=LOWCOV;AC=586;AF=0.27;ASN_AF=0.27;AMR_AF=0.31;AFR_AF=0.16;EUR_AF=0.31 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 1|1:2:-5,-4.1,-0 1|0:1:-5,-0.84,-0.07 0|1:1:-5,-0,-3.47 22 50822841 rs7286685 G A 100 PASS AA=G;AN=2184;THETA=0.0005;RSQ=0.9829;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9958;AC=238;ERATE=0.0007;LDAF=0.1099;AF=0.11;ASN_AF=0.11;AMR_AF=0.05;AFR_AF=0.26;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.28,-0.43,-0.98 0|0:0:-0.24,-0.41,-1.54 0|0:0:-0.06,-0.87,-5 0|0:0:-0.48,-0.48,-0.48 22 50822971 rs140040515 G A 100 PASS ERATE=0.0005;AVGPOST=0.9963;AA=G;AN=2184;VT=SNP;THETA=0.0017;RSQ=0.7871;LDAF=0.0063;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.18,-0.47,-2.14 0|0:0:-0.16,-0.53,-1.76 0|0:0:-0.2,-0.44,-2.05 0|0:0:-0.48,-0.48,-0.48 22 50823001 rs189268178 G T 100 PASS RSQ=0.4926;AA=G;AN=2184;VT=SNP;THETA=0.0033;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AVGPOST=0.9987;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.26,-0.44,-1.06 0|0:0:-0.04,-1.1,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.87,-5 22 50823015 rs181196362 A G 100 PASS AN=2184;RSQ=0.6684;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.12,-0.63,-3.28 0|0:0:-0.04,-1.03,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.35,-5 22 50823099 rs112215987 A G 100 PASS ERATE=0.0004;AVGPOST=0.9986;RSQ=0.9937;AN=2184;VT=SNP;AA=A;LDAF=0.1;SNPSOURCE=LOWCOV;THETA=0.0007;AC=218;AF=0.1;ASN_AF=0.11;AMR_AF=0.04;AFR_AF=0.22;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.19,-0.46,-2.16 22 50823137 rs56169618 G A 100 PASS ERATE=0.0004;AC=848;AN=2184;AVGPOST=0.9975;RSQ=0.9954;VT=SNP;AA=A;LDAF=0.3883;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.39;ASN_AF=0.41;AMR_AF=0.38;AFR_AF=0.43;EUR_AF=0.35 GT:DS:GL 0|1:1:-2.01,-0,-3.66 1|0:1:-5,-0,-3.3 1|1:2:-5,-1.86,-0.01 1|0:1:-4.22,-0.03,-1.25 0|1:1:-4.7,-0,-2.47 22 50823167 rs145663201 T G 100 PASS ERATE=0.0005;THETA=0.0004;RSQ=0.4893;AA=T;AN=2184;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.11,-0.65,-4.7 22 50823236 rs115118038 C G 100 PASS RSQ=0.7493;AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9991;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.07,-0.8,-4.7 0|0:0:-0.04,-1.09,-5 0|0:0:-0.02,-1.4,-5 22 50823368 rs184221153 G C 100 PASS THETA=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.8965;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0017;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.1,-0.68,-4.1 0|0:0:-0.01,-1.91,-5 22 50823433 rs147756801 C T 100 PASS RSQ=0.5844;AA=C;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.43,-5 22 50823444 rs75091994 C T 100 PASS AC=12;AA=C;LDAF=0.0058;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9566;AVGPOST=0.9995;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.3,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-2.64,-5 22 50823621 . 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RSQ=0.7196;AVGPOST=0.9864;AA=T;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.001;AC=33;LDAF=0.0183;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.1,-0.7,-4.1 0|0:0.25:-0.48,-0.48,-0.48 22 50824509 rs186876466 C T 100 PASS AVGPOST=0.9963;AA=C;THETA=0.0002;AN=2184;RSQ=0.5059;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=3;LDAF=0.0031;AF=0.0014;ASN_AF=0.0017;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-4 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.48,-0.48,-0.48 22 50824549 rs114374845 C T 100 PASS AA=C;AN=2184;LDAF=0.0018;THETA=0.0008;VT=SNP;AVGPOST=0.9989;RSQ=0.7324;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.34,-0.26,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.48,-0.48,-0.48 22 50824550 rs7287411 G A 100 PASS 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THETA=0.0015;AA=T;AN=2184;VT=SNP;AVGPOST=0.9993;AC=147;RSQ=0.9956;SNPSOURCE=LOWCOV;LDAF=0.0675;ERATE=0.0003;AF=0.07;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.21;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-2.79,-5 0|0:0:-0,-2.13,-5 22 50825000 rs140787880 G A 100 PASS ERATE=0.0004;RSQ=0.6074;AA=G;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-2.8,-5 0|0:0:-0,-2.31,-5 22 50825197 rs11091006 G A 100 PASS ERATE=0.0004;RSQ=0.9848;AVGPOST=0.9966;AA=G;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0758;SNPSOURCE=LOWCOV;AC=165;AF=0.08;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.3;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.02,-1.32,-5 22 50825204 rs58852793 A G 100 PASS 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THETA=0.0004;RSQ=0.6094;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0.15:-0.03,-1.18,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.04,-1.1,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.02,-1.27,-5 22 50825447 rs138682345 G A 100 PASS LDAF=0.0053;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;AVGPOST=0.9987;RSQ=0.892;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.01,-1.84,-5 22 50825467 rs141697353 C T 100 PASS AC=7;LDAF=0.0033;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9686;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0,-3.27,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.35,-5 22 50825615 rs12159089 G A 100 PASS AN=2184;AVGPOST=0.9947;VT=SNP;AC=898;THETA=0.0006;LDAF=0.4122;AA=-;ERATE=0.0008;RSQ=0.9912;SNPSOURCE=LOWCOV;AF=0.41;ASN_AF=0.41;AMR_AF=0.43;AFR_AF=0.41;EUR_AF=0.4 GT:DS:GL 0|1:1:-4.7,-0,-3.44 1|0:1:-0.21,-0.46,-1.35 1|1:2:-3.03,-0.48,-0.17 1|1:2:-5,-1.69,-0.01 1|1:2:-5,-0.97,-0.05 22 50825749 rs77312585 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.0093;AC=20;VT=SNP;RSQ=0.9656;AVGPOST=0.9993;THETA=0.0006;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.11,-0.64,-3.34 0|0:0:-0.01,-1.93,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.07,-0.83,-5 22 50825815 rs138163743 T G 100 PASS THETA=0.0009;AA=T;AN=2184;VT=SNP;RSQ=0.5047;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.76,-5 0|0:0:-0,-2.38,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.01,-1.89,-5 22 50825833 rs149533135 T A 100 PASS THETA=0.0004;AA=T;AN=2184;AC=8;VT=SNP;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.946;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.66,-5 22 50825981 rs144250381 G C 100 PASS ERATE=0.0004;RSQ=0.8033;LDAF=0.0033;AA=G;AN=2184;AC=6;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AF=0.0027;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.8,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.1,-0.67,-4 0|0:0:-0.01,-1.56,-5 22 50826116 rs73439393 G T 100 PASS AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;LDAF=0.0154;AC=33;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;RSQ=0.9812;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0,-1.94,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.02,-1.32,-5 22 50826237 rs115522828 C T 100 PASS ERATE=0.0004;RSQ=0.914;AA=C;AN=2184;AC=20;THETA=0.0005;LDAF=0.0098;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.02,-1.36,-5 22 50826247 rs189537533 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9966;AN=2184;VT=SNP;RSQ=0.6138;THETA=0.0017;AC=5;SNPSOURCE=LOWCOV;LDAF=0.0031;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.01,-1.85,-5 22 50826272 rs148710364 G A 100 PASS LDAF=0.0009;RSQ=0.693;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.5,-5 0|0:0:-0,-3.14,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.05,-5 22 50826309 rs141472167 C T 100 PASS LDAF=0.0021;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.8799;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.11,-5 22 50826311 rs182894379 T G 100 PASS ERATE=0.0004;THETA=0.0002;AA=T;AN=2184;VT=SNP;RSQ=0.6929;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0,-3.1,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.88,-5 22 50826330 rs76136674 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0012;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5114;AVGPOST=0.9987;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-3.3,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.02,-1.38,-5 0|0:0:-0.01,-1.88,-5 22 50826336 rs8142016 C T 100 PASS LDAF=0.3618;AC=790;AA=T;AN=2184;AVGPOST=0.9975;RSQ=0.9954;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.36;ASN_AF=0.38;AMR_AF=0.42;AFR_AF=0.27;EUR_AF=0.38 GT:DS:GL 0|1:1:-0.03,-1.19,-5 1|0:1:-5,0,-5 1|1:2:-5,-4.7,-0 1|1:2:-5,-1.48,-0.01 1|1:2:-5,-2.21,-0 22 50826337 rs76201378 G A 100 PASS ERATE=0.0004;LDAF=0.0282;THETA=0.0004;AA=G;AN=2184;RSQ=0.96;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=60;AF=0.03;ASN_AF=0.1 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0.01,-1.85,-5 22 50826352 rs187749929 G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;RSQ=0.7077;ERATE=0.0003;AVGPOST=0.9984;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.14,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.01,-1.54,-5 22 50826371 rs147470633 T C 100 PASS AA=T;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;RSQ=0.6933;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.56,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-2.32,-5 22 50826397 rs139970846 T A 100 PASS RSQ=0.9914;LDAF=0.0042;AA=T;AN=2184;THETA=0.0008;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.1,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-3.42,-5 22 50826608 rs7285132 A T 100 PASS LDAF=0.6355;RSQ=0.7858;AA=T;AN=2184;VT=SNP;AVGPOST=0.8706;ERATE=0.0393;SNPSOURCE=LOWCOV;AC=1416;THETA=0.0036;AF=0.65;ASN_AF=0.54;AMR_AF=0.55;AFR_AF=0.85;EUR_AF=0.65 GT:DS:GL 0|1:1.2:-3.02,-0.46,-0.19 1|0:1.1:-0.44,-0.46,-0.54 1|0:1:-0.44,-0.46,-0.54 0|1:1:-1.15,-0.03,-5 1|1:1.65:-3.52,-0.47,-0.18 22 50826837 . AT A 361 PASS LDAF=0.3693;AC=803;AN=2184;VT=INDEL;THETA=0.0005;AVGPOST=0.9657;RSQ=0.9437;ERATE=0.0058;AF=0.37;ASN_AF=0.38;AMR_AF=0.42;AFR_AF=0.28;EUR_AF=0.39 GT:DS:GL 0|1:1:-8.7,0,-4.9 1|0:1:-3.1,-0.3,0 1|1:2:-1.4,-0.3,0 1|1:2:-2.4,-0.3,0 1|1:2:0,0,0 22 50826838 rs12159606 T A 100 PASS RSQ=0.8977;AN=2184;VT=SNP;AA=A;AC=825;THETA=0.0025;SNPSOURCE=LOWCOV;AVGPOST=0.9373;ERATE=0.0154;LDAF=0.3833;AF=0.38;ASN_AF=0.4;AMR_AF=0.43;AFR_AF=0.3;EUR_AF=0.39 GT:DS:GL 0|1:1:-5,-0,-4.4 1|0:1.2:-2.35,-0.15,-0.54 1|1:2:-2.72,-0.49,-0.17 1|1:2:-2.87,-0.46,-0.19 1|1:1.95:-0.48,-0.48,-0.48 22 50826890 rs193253358 G A 100 PASS THETA=0.0004;AA=G;AN=2184;RSQ=0.7805;VT=SNP;LDAF=0.0019;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.35,-5 22 50827027 rs185675445 G A 100 PASS ERATE=0.0004;AVGPOST=0.9977;LDAF=0.0016;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.4044;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.22,-0.42,-1.7 0|0:0:-0.06,-0.88,-5 0|0:0:-0.14,-0.57,-3.34 22 50827041 rs187394369 G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.3519;AVGPOST=0.997;LDAF=0.002;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.12,-0.62,-4 0|0:0:-0.23,-0.41,-1.62 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.1,-0.68,-4.4 22 50827174 rs192235984 A G 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AVGPOST=0.9991;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;RSQ=0.8064;AA=a;THETA=0.0007;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0.14,-0.56,-2.81 0|0:0:-0.22,-0.42,-1.79 0|0:0:-0.06,-0.88,-5 0|0:0:-0.48,-0.48,-0.48 22 50827274 rs183977764 G A 100 PASS ERATE=0.0005;RSQ=0.5697;THETA=0.0004;LDAF=0.0047;AA=G;AN=2184;AC=6;VT=SNP;AVGPOST=0.9948;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.0017;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.02,-1.31,-5 22 50827647 rs188705002 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;RSQ=0.8474;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.49,-5 0|0:0:-0.67,-0.1,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0.01,-1.84,-5 22 50827679 rs12158252 C A 100 PASS AA=C;THETA=0.0004;AN=2184;AC=8;RSQ=0.9496;VT=SNP;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.02,-1.36,-5 22 50827732 rs116854854 G A 100 PASS THETA=0.0004;AA=G;AN=2184;AC=46;AVGPOST=0.9962;VT=SNP;RSQ=0.9299;LDAF=0.0223;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.02;AMR_AF=0.09;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0,-2.6,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.04,-1.11,-5 22 50827756 rs117246629 G T 100 PASS ERATE=0.0004;RSQ=0.9929;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0326;SNPSOURCE=LOWCOV;AC=71;AVGPOST=0.9995;AF=0.03;ASN_AF=0.08;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.21,-0.47,-1.35 0|0:0:-0.04,-1.08,-5 0|0:0:-0.11,-0.66,-4.7 22 50827818 rs145596226 A G 100 PASS AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;RSQ=0.7189;AA=A;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.07,-0.84,-5 22 50827848 rs147294771 A G 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;AA=A;LDAF=0.0006;RSQ=0.7318;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-2.08,-5 0|0:0:-0,-3.14,-5 0|0:0:-0.1,-0.7,-4.22 0|0:0:-0,-2.09,-5 22 50827941 rs181430853 T C 100 PASS LDAF=0.0004;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.5449;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.91,-5 0|0:0:-0,-2.87,-5 0|0:0:-0,-2.35,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.13,-5 22 50828021 rs149843813 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=40;AVGPOST=0.9972;VT=SNP;THETA=0.0011;LDAF=0.0189;RSQ=0.9396;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0:-0.32,-0.43,-0.83 0|0:0:-0.05,-0.98,-5 0|0:0:-0.14,-0.56,-2.97 0|0:0:-0.21,-0.43,-1.89 22 50828067 rs144900791 G A 100 PASS ERATE=0.0005;THETA=0.0014;AA=G;AN=2184;AVGPOST=0.9952;VT=SNP;AC=9;LDAF=0.0049;SNPSOURCE=LOWCOV;RSQ=0.6231;AF=0.0041;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 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0|0:0:-0.07,-0.86,-5 0|0:0:-0.09,-0.73,-4.7 0|0:0:-0.07,-0.8,-5 22 50828275 rs140284135 C G 100 PASS ERATE=0.0004;AA=C;AC=73;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9987;RSQ=0.983;LDAF=0.0338;AF=0.03;ASN_AF=0.09;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.13,-0.59,-3.7 0|0:0:-0.04,-1.08,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.19,-0.46,-2.94 22 50828276 rs145492826 G A 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=G;AN=2184;RSQ=0.8147;THETA=0.0005;VT=SNP;LDAF=0.0029;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.27,-5 0|0:0:-0.13,-0.59,-3.7 0|0:0:-0.05,-0.99,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.18,-0.46,-3.01 22 50828392 rs138004881 G A 100 PASS AA=G;AN=2184;RSQ=0.9233;AVGPOST=0.9997;THETA=0.0008;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.04,-1.05,-5 22 50828411 rs140896911 C A 100 PASS 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AC=72;ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.9925;LDAF=0.0332;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.03;ASN_AF=0.09;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.87,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.44,-5 0|0:0:-0.19,-0.46,-2.36 0|0:0:-0.18,-0.46,-2.98 22 50832188 rs146661321 C T 100 PASS RSQ=0.9892;THETA=0.0015;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0147;AC=32;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-3.47,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50832228 rs115555503 G A 100 PASS LDAF=0.0145;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0011;AC=32;RSQ=0.9936;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.28,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50832305 rs183930391 T A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;LDAF=0.0018;VT=SNP;THETA=0.0011;RSQ=1;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50832326 . G C 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50832366 rs140304979 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;AC=1;RSQ=0.8457;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50832373 rs187900441 T C 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50832506 . C T 100 PASS AA=C;THETA=0.0014;RSQ=0.8839;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50832577 rs191984060 G C 100 PASS RSQ=0.1999;AA=G;AN=2184;VT=SNP;LDAF=0.0001;AVGPOST=0.9998;AC=0;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50832674 rs182998009 G A 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.8138;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.63,-5 0|0:0:-0,-3.14,-5 0|0:0:-0,-4.22,-5 22 50832752 rs12160258 A C 100 PASS ERATE=0.0004;AC=760;AN=2184;AVGPOST=0.9981;VT=SNP;AA=A;SNPSOURCE=LOWCOV;RSQ=0.9971;LDAF=0.3479;THETA=0.0003;AF=0.35;ASN_AF=0.38;AMR_AF=0.41;AFR_AF=0.22;EUR_AF=0.38 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,-0.01,-1.8 1|1:2:-5,-0.98,-0.05 1|1:2:-5,-2.57,-0 1|1:2:-5,-2.67,-0 22 50832799 rs187671173 G T 100 PASS RSQ=0.8981;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;LDAF=0.0026;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0,-1.94,-5 22 50832835 rs192868950 G T 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7221;THETA=0.0007;AVGPOST=0.9987;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.09,-0.75,-5 0|0:0:-0.1,-0.69,-4.4 0|0:0:-0.12,-0.62,-4.7 22 50832843 rs12159099 G A 100 PASS AVGPOST=0.9936;AC=759;LDAF=0.3458;AA=G;AN=2184;VT=SNP;THETA=0.0006;ERATE=0.0008;RSQ=0.9891;SNPSOURCE=LOWCOV;AF=0.35;ASN_AF=0.38;AMR_AF=0.41;AFR_AF=0.22;EUR_AF=0.38 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-0.12,-0.62,-5 1|1:2:-4.7,-0.61,-0.12 1|1:2:-5,-0.74,-0.09 1|1:2:-4.7,-0.7,-0.1 22 50832846 rs12159888 C A 100 PASS AN=2184;VT=SNP;AC=757;THETA=0.0011;AA=A;AVGPOST=0.9938;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9893;LDAF=0.3451;AF=0.35;ASN_AF=0.38;AMR_AF=0.41;AFR_AF=0.21;EUR_AF=0.38 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-0.01,-1.79,-5 1|1:2:-4.4,-0.61,-0.12 1|1:2:-5,-0.96,-0.05 1|1:2:-3.58,-0.48,-0.18 22 50832885 rs146491258 A G 100 PASS ERATE=0.0004;AVGPOST=0.9985;AN=2184;RSQ=0.5358;THETA=0.0008;VT=SNP;AA=A;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.06,-0.9,-5 0|0:0.05:-0.11,-0.66,-4.7 22 50832929 rs73172204 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.993;VT=SNP;AC=643;AVGPOST=0.9964;LDAF=0.2946;SNPSOURCE=LOWCOV;THETA=0.0036;AF=0.29;ASN_AF=0.27;AMR_AF=0.38;AFR_AF=0.16;EUR_AF=0.36 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-2.41,-0.1,-0.68 1|1:2:-5,-1.27,-0.02 1|1:2:-5,-0.67,-0.1 1|1:2:-5,-1.83,-0.01 22 50833192 rs184913449 G A 100 PASS THETA=0.0009;ERATE=0.0005;RSQ=0.4247;AA=G;AN=2184;VT=SNP;AVGPOST=0.997;LDAF=0.002;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.36,-0.44,-0.7 0|0:0:-0.14,-0.57,-2.65 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.19,-0.46,-2.96 22 50833204 rs149072790 G A 100 PASS AVGPOST=0.9888;RSQ=0.4562;AA=G;AN=2184;ERATE=0.0024;VT=SNP;SNPSOURCE=LOWCOV;AC=11;THETA=0.0003;LDAF=0.0082;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.18,-0.5,-1.64 0|0:0:-0.12,-0.61,-3.07 0|0:0.1:-0.11,-0.65,-3.8 0|0:0:-0.18,-0.47,-3.06 22 50833207 rs112094983 C T 100 PASS AA=C;AN=2184;LDAF=0.0407;THETA=0.0005;VT=SNP;AC=82;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.8513;AVGPOST=0.9842;AF=0.04;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.09 GT:DS:GL 0|1:1:-2.18,-0.01,-1.74 0|0:0.3:-0.18,-0.5,-1.63 1|0:1:-5,-0.72,-0.09 0|0:0:-0.12,-0.62,-3.59 0|1:1:-2.43,-0,-2.21 22 50833208 rs189320177 G A 100 PASS RSQ=0.372;AA=G;AN=2184;VT=SNP;AVGPOST=0.9973;LDAF=0.002;SNPSOURCE=LOWCOV;THETA=0.0016;AC=2;ERATE=0.0007;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.18,-0.5,-1.62 0|0:0:-0.12,-0.61,-3.09 0|0:0:-0.1,-0.69,-4.22 0|0:0:-0.11,-0.66,-4.7 22 50833259 rs12159321 T C 100 PASS RSQ=0.9882;AVGPOST=0.9936;LDAF=0.3465;AA=T;AN=2184;VT=SNP;ERATE=0.001;AC=756;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.35;ASN_AF=0.38;AMR_AF=0.4;AFR_AF=0.22;EUR_AF=0.38 GT:DS:GL 0|1:1:-5,-0.89,-0.06 1|0:1:-0.14,-0.57,-2.8 1|1:2:-2.18,-0.45,-0.2 1|1:2:-5,-1.03,-0.04 1|1:2:-3.47,-0.47,-0.18 22 50833332 rs192407745 G A 100 PASS ERATE=0.0005;AVGPOST=0.9994;RSQ=0.6082;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0016;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.43,-1.91 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 22 50833384 rs184531593 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9993;RSQ=0.6077;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.53,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0.19,-0.46,-2.17 22 50833434 rs117434840 G C 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.9352;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9987;AC=19;LDAF=0.0091;AF=0.01;ASN_AF=0.03;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.18,-5 0|0:0:-0,-2.24,-5 0|0:0:-0,-3.08,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0,-2.34,-5 22 50833749 rs140384014 G A 100 PASS ERATE=0.0004;RSQ=0.8108;AA=G;AN=2184;VT=SNP;LDAF=0.0029;AC=5;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.0023;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.01,-1.58,-5 22 50833816 rs7511085 G A 100 PASS THETA=0.0009;AVGPOST=0.9939;LDAF=0.347;AA=G;AN=2184;VT=SNP;AC=757;RSQ=0.9894;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.35;ASN_AF=0.37;AMR_AF=0.4;AFR_AF=0.22;EUR_AF=0.38 GT:DS:GL 0|1:1:-4.4,-0,-3.47 1|0:1:-5,-0.01,-1.69 1|1:2:-5,-0.73,-0.09 1|1:2:-5,-1.93,-0.01 1|1:2:-5,-1.55,-0.01 22 50834005 rs147043357 T C 100 PASS ERATE=0.0005;THETA=0.0023;LDAF=0.0021;AA=T;AN=2184;VT=SNP;RSQ=0.6397;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9982;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.05,-0.95,-5 0|0:0:-0.06,-0.86,-5 22 50834042 rs76014373 T A 100 PASS THETA=0.0014;AA=T;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=19;RSQ=0.946;LDAF=0.0091;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.03,-1.11,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.19,-0.45,-2.14 22 50834061 rs10428053 C T 100 PASS ERATE=0.0004;AC=35;AA=C;AN=2184;VT=SNP;LDAF=0.0162;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.973;THETA=0.0016;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.4,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.07,-5 22 50834136 rs138265938 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.5688;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0039;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9955;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.02,-1.27,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.19,-0.46,-2.36 0|0:0:-0.22,-0.42,-1.71 22 50834150 rs143922232 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9983;AN=2184;RSQ=0.8369;VT=SNP;THETA=0.0006;AC=9;SNPSOURCE=LOWCOV;LDAF=0.0045;AF=0.0041;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.03,-1.17,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.48,-0.48,-0.48 22 50834181 rs74712657 A G 100 PASS ERATE=0.0005;LDAF=0.1306;AN=2184;THETA=0.0005;VT=SNP;AC=284;AA=A;AVGPOST=0.9964;SNPSOURCE=LOWCOV;RSQ=0.9865;AF=0.13;ASN_AF=0.25;AMR_AF=0.15;AFR_AF=0.04;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.07,-0.83,-5 0|1:1:-5,-0.35,-0.26 1|0:1:-5,-0.88,-0.06 0|0:0:-0.48,-0.48,-0.48 22 50834255 rs147261066 C T 100 PASS ERATE=0.0005;RSQ=0.9723;THETA=0.0022;AN=2184;AVGPOST=0.9979;LDAF=0.0324;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=69;AF=0.03;ASN_AF=0.08;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.06,-0.87,-5 0|0:0:-0.13,-0.6,-3.74 0|0:0:-0.03,-1.22,-5 0|0:0:-0.48,-0.48,-0.48 22 50834261 rs62241887 G C 100 PASS AC=226;AA=g;AN=2184;THETA=0.0038;VT=SNP;ERATE=0.0008;RSQ=0.9626;SNPSOURCE=LOWCOV;AVGPOST=0.9905;LDAF=0.1051;AF=0.1;ASN_AF=0.0035;AMR_AF=0.18;AFR_AF=0.01;EUR_AF=0.2 GT:DS:GL 0|1:1:-2.32,-0.01,-1.65 0|0:0:-0.09,-0.72,-4.7 1|0:1:-2.12,-0.02,-1.51 0|1:1:-0.03,-1.22,-5 1|1:1.95:-4.22,-0.57,-0.14 22 50834327 . G GA 122 PASS THETA=0.0022;AN=2184;AC=93;VT=INDEL;RSQ=0.7183;LDAF=0.0521;AVGPOST=0.9651;ERATE=0.0041;AF=0.04;ASN_AF=0.03;AMR_AF=0.05;AFR_AF=0.02;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-0.9,-7.8 1|0:0.9:0,0,0 0|0:0:0,-0.5,-3.1 0|0:0:0,-0.3,-2.6 0|0:0:0,0,0 22 50834364 rs149416696 C T 100 PASS ERATE=0.0004;RSQ=0.891;LDAF=0.0041;AA=C;AN=2184;AC=8;AVGPOST=0.999;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.08,-0.78,-4.7 0|0:0:-0.1,-0.68,-4.1 0|0:0:-0.11,-0.66,-4.7 22 50834487 rs189366017 A G 100 PASS RSQ=0.4704;AN=2184;AVGPOST=0.9914;AC=6;THETA=0.0005;LDAF=0.0062;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.0027;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.08,-0.8,-5 0|0:0:-0.19,-0.46,-2.06 0|0:0:-0.18,-0.47,-3.07 22 50834581 rs182015407 C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=41;AVGPOST=0.9811;SNPSOURCE=LOWCOV;ERATE=0.0012;RSQ=0.6933;LDAF=0.0243;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.05;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 0|0:0.2:-0.23,-0.41,-1.61 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.09,-0.71,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50834655 rs73439394 G A 100 PASS AC=1102;AA=g;AN=2184;VT=SNP;LDAF=0.4973;AVGPOST=0.9035;RSQ=0.8605;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0102;AF=0.5;ASN_AF=0.41;AMR_AF=0.45;AFR_AF=0.79;EUR_AF=0.41 GT:DS:GL 0|1:1:-0.35,-0.41,-0.78 1|0:0.8:-0.48,-0.48,-0.48 1|1:1.6:-0.22,-0.42,-1.79 1|1:1.6:-0.48,-0.48,-0.48 1|1:1.65:-0.48,-0.48,-0.48 22 50834696 rs190110416 C T 100 PASS RSQ=0.6342;AA=C;AN=2184;VT=SNP;AVGPOST=0.9976;THETA=0.0089;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0023;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.48,-0.48,-0.48 22 50834752 rs181258810 C T 100 PASS AC=7;AVGPOST=0.9904;RSQ=0.4257;AA=C;AN=2184;VT=SNP;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0015;THETA=0.0007;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 22 50834762 rs144782173 A G 100 PASS THETA=0.0032;AN=2184;AC=16;VT=SNP;LDAF=0.0085;SNPSOURCE=LOWCOV;RSQ=0.8715;AVGPOST=0.9968;AA=a;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.41,-1.52 0|0:0:-0.06,-0.87,-5 0|0:0:-0.48,-0.48,-0.48 22 50834855 rs73172205 T C 100 PASS AVGPOST=0.9735;LDAF=0.1093;AA=T;AN=2184;VT=SNP;AC=227;RSQ=0.91;SNPSOURCE=LOWCOV;ERATE=0.004;THETA=0.0043;AF=0.1;ASN_AF=0.0017;AMR_AF=0.17;AFR_AF=0.02;EUR_AF=0.21 GT:DS:GL 0|1:1:-2.3,-0.01,-1.72 0|0:0:-0.07,-0.81,-5 0|0:0.45:-0.1,-0.69,-4.4 0|1:1:-2.17,-0.02,-1.47 1|1:1.7:-0.23,-0.41,-1.61 22 50834878 rs143040651 C T 100 PASS AVGPOST=0.9945;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=31;LDAF=0.0154;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.8688;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.12,-0.61,-3.11 0|0:0.05:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50834889 rs146190085 A C 100 PASS THETA=0.0078;AN=2184;AC=20;LDAF=0.0125;VT=SNP;AA=A;RSQ=0.7581;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9925;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.2,-0.45,-2.15 0|0:0:-0.06,-0.88,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50834970 rs73439395 T G 100 PASS ERATE=0.0004;AVGPOST=0.9986;AC=28;AA=T;AN=2184;VT=SNP;RSQ=0.9617;THETA=0.0012;SNPSOURCE=LOWCOV;LDAF=0.0135;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-3.32,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.12,-5 22 50834989 rs186444730 G A 100 PASS RSQ=0.7029;AA=G;AN=2184;VT=SNP;LDAF=0.0026;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;THETA=0.0064;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-3.05,-5 0|0:0:-0,-2.45,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.54,-5 22 50835040 rs9628184 G A 100 PASS RSQ=0.9073;AN=2184;VT=SNP;AC=631;AA=A;ERATE=0.062;LDAF=0.2979;AVGPOST=0.9503;SNPSOURCE=LOWCOV;THETA=0.002;AF=0.29;ASN_AF=0.35;AMR_AF=0.28;AFR_AF=0.25;EUR_AF=0.27 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|1:1:-5,-0.06,-0.89 1|0:1:-5,0,-5 0|1:1.4:-5,-0.89,-0.06 1|0:1:-5,0,-5 22 50835071 rs139060797 C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.8366;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0017;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0,-3.03,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.01,-1.61,-5 0|0:0:-0.01,-1.59,-5 22 50835095 rs190838697 C T 100 PASS LDAF=0.0021;AA=C;THETA=0.0061;AN=2184;RSQ=0.5823;VT=SNP;AVGPOST=0.9976;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0017;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.59,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.84,-5 22 50835105 rs144048785 A G 100 PASS ERATE=0.0004;LDAF=0.0009;AN=2184;THETA=0.0031;VT=SNP;RSQ=0.5861;AA=A;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.55,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.14,-5 22 50835126 rs182602921 C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0012;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-3.03,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-2.31,-5 22 50835152 rs114255769 T C 100 PASS RSQ=0.9385;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AC=11;ERATE=0.0003;LDAF=0.0051;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.01,-1.6,-5 22 50835175 rs185466410 G C 100 PASS AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0098;RSQ=0.6288;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.04,-1.09,-5 22 50835210 rs191019031 G A 100 PASS ERATE=0.0004;THETA=0.0026;AA=G;AN=2184;RSQ=0.7292;VT=SNP;LDAF=0.0019;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.92,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.04,-1.06,-5 22 50835258 rs76623225 G A 100 PASS RSQ=0.9731;LDAF=0.0149;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0018;AC=32;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.04,-1.03,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.07,-0.83,-5 22 50835405 rs183500031 G T 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;RSQ=0.671;LDAF=0.0006;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.53,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.02,-1.35,-5 22 50835500 rs12163522 C T 100 PASS RSQ=0.9016;AA=C;AN=2184;AC=13;VT=SNP;LDAF=0.0064;SNPSOURCE=LOWCOV;THETA=0.0063;ERATE=0.0003;AVGPOST=0.9984;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-3.36,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0,-4.4,-5 22 50835575 rs115846476 A G 100 PASS LDAF=0.0112;AN=2184;RSQ=0.9877;THETA=0.0041;VT=SNP;AC=24;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-3.07,-5 0|0:0:-0,-3.59,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-4,-5 22 50835597 rs150969244 G A 100 PASS ERATE=0.0004;RSQ=0.8821;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9995;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-2.51,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-3.05,-5 22 50835731 rs72490268 A G 100 PASS AN=2184;AC=424;THETA=0.006;ERATE=0.0044;VT=SNP;AA=-;SNPSOURCE=LOWCOV;LDAF=0.1966;RSQ=0.9556;AVGPOST=0.9801;AF=0.19;ASN_AF=0.4;AMR_AF=0.18;AFR_AF=0.1;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.07,-0.84,-5 0|1:1:-5,0,-5 1|0:1:-3.85,-0,-5 0|0:0:-0,-2.35,-5 22 50835736 rs187463620 G C 100 PASS ERATE=0.0004;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0104;AVGPOST=0.9998;AA=-;SNPSOURCE=LOWCOV;RSQ=0.8942;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0,-2.94,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-2.59,-5 22 50835748 rs192933665 C T 100 PASS AN=2184;LDAF=0.0018;VT=SNP;AVGPOST=0.998;AA=-;SNPSOURCE=LOWCOV;THETA=0.0058;ERATE=0.0003;RSQ=0.5986;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.22,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.86,-5 22 50835797 rs78442794 G A 100 PASS THETA=0.0009;AA=G;AN=2184;AC=55;RSQ=0.9814;VT=SNP;LDAF=0.0255;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.03;AMR_AF=0.02;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0,-3,-5 0|0:0:-0,-2.85,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-2.8,-5 22 50835809 rs139508964 A G 100 PASS AN=2184;VT=SNP;AA=A;ERATE=0.0008;LDAF=0.0028;AC=5;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.789;AVGPOST=0.9984;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-3.47,-5 22 50835862 rs183159793 A C 100 PASS AN=2184;VT=SNP;THETA=0.0045;AA=A;AVGPOST=0.9998;RSQ=0.8148;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.69,-5 0|0:0:-0,-2.1,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.61,-5 22 50835954 rs56211323 A G 100 PASS THETA=0.0039;AVGPOST=0.981;AN=2184;VT=SNP;LDAF=0.0542;AA=A;AC=108;SNPSOURCE=LOWCOV;ERATE=0.0022;RSQ=0.8583;AF=0.05;ASN_AF=0.11;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-1.95,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.04,-1.08,-5 22 50835976 rs74196783 A AG 431 PASS AN=2184;ERATE=0.0288;VT=INDEL;RSQ=0.7963;AC=810;THETA=0.0016;AVGPOST=0.8735;LDAF=0.3833;AF=0.37;ASN_AF=0.41;AMR_AF=0.34;AFR_AF=0.46;EUR_AF=0.3 GT:DS:GL 0|1:1:-12.3,0,-13.4 0|0:0:0,-0.3,-2 1|1:1.85:-3.9,-0.3,0 1|1:2:-11.8,-0.9,0 1|1:1.7:-2.1,-0.3,0 22 50835998 rs9616909 C T 100 PASS THETA=0.0068;ERATE=0.0407;AVGPOST=0.8905;AA=C;AN=2184;LDAF=0.1725;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.6951;AC=312;AF=0.14;ASN_AF=0.11;AMR_AF=0.12;AFR_AF=0.29;EUR_AF=0.08 GT:DS:GL 0|0:0:-0,-2.89,-5 1|0:0.7:-0.72,-0.09,-5 0|0:0:-0.2,-0.44,-2.07 0|0:0.1:-0.1,-0.68,-4 0|0:0:-0.12,-0.63,-3.92 22 50836012 rs7410425 T C 100 PASS AC=707;THETA=0.0065;AVGPOST=0.8561;ERATE=0.0669;AA=T;AN=2184;VT=SNP;LDAF=0.3402;RSQ=0.7146;SNPSOURCE=LOWCOV;AF=0.32;ASN_AF=0.42;AMR_AF=0.29;AFR_AF=0.44;EUR_AF=0.2 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0.1:-0.01,-1.53,-5 0|0:0.15:-0.09,-0.74,-4.4 1|0:0.6:-0.48,-0.48,-0.48 0|0:0.05:-0.08,-0.79,-5 22 50836331 rs9628235 G A 100 PASS AC=464;AA=G;AN=2184;VT=SNP;LDAF=0.2649;RSQ=0.5647;SNPSOURCE=LOWCOV;AVGPOST=0.8139;THETA=0.0036;ERATE=0.0906;AF=0.21;ASN_AF=0.15;AMR_AF=0.24;AFR_AF=0.27;EUR_AF=0.21 GT:DS:GL 0|0:0.5:-0.16,-0.51,-2.89 0|0:0.15:-0.03,-1.11,-5 0|0:0.5:-0.48,-0.48,-0.48 0|1:0.95:-0.48,-0.48,-0.48 1|1:1.35:-0.48,-0.48,-0.48 22 50836360 rs55748767 T TCC 187 PASS LDAF=0.1395;ERATE=0.0168;AN=2184;RSQ=0.5158;VT=INDEL;AC=181;AVGPOST=0.8578;THETA=0.0052;AF=0.08;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.07;EUR_AF=0.1 GT:DS:GL 0|0:0.35:0,-0.6,-9.2 0|0:0.2:0,0,0 0|0:0.4:0,0,0 0|0:0.2:0,0,0 0|0:0.35:0,0,0 22 50836499 rs192561772 C T 100 PASS ERATE=0.0005;AA=C;RSQ=0.6505;AN=2184;VT=SNP;THETA=0.0056;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9982;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.55,-5 0|0:0:-0.01,-1.89,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0.01,-1.8,-5 22 50836522 rs60746132 G A 100 PASS 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AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9981;AC=941;LDAF=0.431;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9974;AF=0.43;ASN_AF=0.76;AMR_AF=0.43;AFR_AF=0.17;EUR_AF=0.35 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.01,-1.56,-5 0|1:1:-5,0,-5 1|0:1:-4.22,-0,-2.85 0|0:0:-0.48,-0.48,-0.48 22 50838313 rs142099053 A G 100 PASS ERATE=0.0004;RSQ=0.6552;AN=2184;VT=SNP;AVGPOST=0.9991;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0013;AA=a;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.22,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.19,-0.46,-2.16 22 50838346 rs186331219 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;RSQ=0.3939;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9974;LDAF=0.0017;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.16,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.02,-1.34,-5 22 50838369 rs78127291 T G 100 PASS LDAF=0.0024;AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0006;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.946;AF=0.0023;ASN_AF=0.01 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AC=7;LDAF=0.0036;AN=2184;RSQ=0.9257;VT=SNP;AA=-;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AVGPOST=0.9992;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.05,-5 0|0:0:-0.12,-0.63,-2.38 0|0:0:-0.05,-0.94,-5 0|0:0:-0.22,-0.42,-1.75 22 50844632 rs183984520 T C 100 PASS ERATE=0.0005;AN=2184;RSQ=0.7082;THETA=0.0008;VT=SNP;AVGPOST=0.9976;AC=5;SNPSOURCE=LOWCOV;AA=N;LDAF=0.0031;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.09,-0.72,-2.81 0|0:0:-0.1,-0.68,-4.1 0|0:0:-0.14,-0.56,-3.3 22 50844633 rs144577592 G A 100 PASS ERATE=0.0005;RSQ=0.5901;LDAF=0.0016;AA=g;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.09,-0.72,-2.81 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.08,-0.75,-5 22 50844694 rs188715124 A G 100 PASS AVGPOST=0.9933;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.001;LDAF=0.0044;SNPSOURCE=LOWCOV;AA=a;AC=3;RSQ=0.4154;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.08,-0.77,-5 0|0:0:-0.09,-0.71,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.11,-0.65,-3.74 0|0:0:-0.13,-0.58,-3.49 22 50844896 rs181411713 G C 100 PASS AC=7;AA=g;AN=2184;LDAF=0.0032;THETA=0.0005;VT=SNP;RSQ=0.9894;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.28,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.32,-5 0|0:0:0,-5,-5 22 50844912 rs142826123 G A 100 PASS AVGPOST=1;LDAF=0.0009;AA=g;THETA=0.0004;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.79,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-3.4,-5 0|0:0:0,-5,-5 22 50844986 rs12167579 G T 100 PASS LDAF=0.0042;AN=2184;RSQ=0.9895;VT=SNP;THETA=0.0006;AC=9;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AVGPOST=0.9999;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50845026 rs184342780 G T 100 PASS ERATE=0.0004;AA=g;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.998;LDAF=0.002;SNPSOURCE=LOWCOV;RSQ=0.668;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.46,-0.18,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50845178 . C T 100 PASS AN=2184;VT=SNP;AA=c;RSQ=0.8803;SNPSOURCE=EXOME;AC=1;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50845314 . G A 100 PASS AA=g;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8803;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50845381 rs189576394 G A 100 PASS ERATE=0.0005;AA=g;AN=2184;VT=SNP;RSQ=0.8555;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0012;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.66,-5 0|0:0:-0,-2.99,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50845397 rs182043670 C T 100 PASS ERATE=0.0005;RSQ=0.7227;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;AA=a;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.41,-5 0|0:0:-0.61,-0.12,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50845515 rs141308521 C G 100 PASS THETA=0.0004;AN=2184;AC=8;RSQ=0.9767;LDAF=0.0037;VT=SNP;AA=c;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.05,-1,-5 0|0:0:-0,-2.12,-5 0|0:0:-0,-4.7,-5 22 50845541 rs187498456 C T 100 PASS ERATE=0.0191;THETA=0.0004;RSQ=0.7032;AN=2184;LDAF=0.0377;VT=SNP;AVGPOST=0.9724;AA=c;AC=70;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.02;AMR_AF=0.05;AFR_AF=0.04;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0.45:-1.15,-0.03,-5 0|1:0.75:-1.91,-0.01,-3.8 0|0:0:-0,-2.17,-5 0|0:0:-0,-2.96,-5 22 50845628 rs12163500 T C 100 PASS AVGPOST=0.9977;LDAF=0.1937;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9936;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=425;AA=t;AF=0.19;ASN_AF=0.42;AMR_AF=0.17;AFR_AF=0.1;EUR_AF=0.1 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.11,-0.63,-4.1 0|1:1:-1.52,-0.01,-4.7 1|0:1:-5,-0,-2.49 0|0:0:-0.02,-1.26,-5 22 50845646 rs12162877 C T 100 PASS LDAF=0.1707;AN=2184;AVGPOST=0.9972;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=375;ERATE=0.0006;RSQ=0.9918;THETA=0.0003;AF=0.17;ASN_AF=0.41;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0.48,-0.48,-0.48 0|1:1:-0.48,-0.48,-0.48 1|0:1:-5,-0.03,-1.11 0|0:0:-0.04,-1.03,-5 22 50845702 . G GGAGGCA 2088 PASS RSQ=0.8839;AN=2184;ERATE=0.0081;VT=INDEL;AC=1003;AVGPOST=0.9171;THETA=0.0007;LDAF=0.4457;AF=0.46;ASN_AF=0.75;AMR_AF=0.42;AFR_AF=0.38;EUR_AF=0.31 GT:DS:GL 0|0:0.05:0,-1.8,-34 0|0:0.05:0,0,0 0|1:1:0,0,0 1|0:1:-6.7,0,-6.1 0|0:0.25:0,0,0 22 50845737 rs140526034 C T 100 PASS AC=12;ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9971;SNPSOURCE=LOWCOV;RSQ=0.8336;LDAF=0.0069;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.45,-5 0|0:0:-0.24,-0.44,-1.16 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.2,-0.44,-2.67 22 50845773 rs75704960 C CA 504 PASS AN=2184;ERATE=0.0094;LDAF=0.4703;VT=INDEL;AC=1032;RSQ=0.9357;THETA=0.0003;AVGPOST=0.954;AF=0.47;ASN_AF=0.75;AMR_AF=0.43;AFR_AF=0.39;EUR_AF=0.34 GT:DS:GL 0|0:0.05:0,-1.2,-11 0|0:0:0,-0.3,-2.7 0|1:1.05:0,0,0 1|0:1:-3.5,-0.3,0 0|0:0:0,-0.6,-5.5 22 50846041 rs150455028 G A 100 PASS RSQ=0.9813;AA=G;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0023;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.62,-5 22 50846073 rs138349353 C T 100 PASS RSQ=0.5841;AA=C;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-3.47,-5 0|0:0:-0,-3.8,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.5,-5 22 50846107 rs149214289 T A 100 PASS ERATE=0.0004;LDAF=0.0009;AA=T;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=2;RSQ=0.7031;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.07,-0.85,-5 22 50846257 rs146938513 A G 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.7896;AN=2184;AC=6;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9984;LDAF=0.0031;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-3.15,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.06,-0.86,-5 22 50846311 rs137877750 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=6;THETA=0.0005;VT=SNP;RSQ=0.8865;SNPSOURCE=LOWCOV;LDAF=0.0031;AVGPOST=0.9992;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.01,-1.84,-5 22 50846351 rs143541738 G A 100 PASS AC=7;ERATE=0.0005;RSQ=0.8624;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0034;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.02,-1.3,-5 22 50846476 rs188841193 C A 100 PASS AA=C;AN=2184;LDAF=0.0018;VT=SNP;RSQ=0.4363;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0006;AVGPOST=0.9974;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.12,-0.62,-3.85 22 50846674 rs138834171 A G 100 PASS AN=2184;VT=SNP;THETA=0.003;AA=A;RSQ=0.5725;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.27,-5 0|0:0:-0,-2.88,-5 0|0:0:-0,-2.8,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-3.66,-5 22 50846838 rs141294672 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.8177;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.01,-1.82,-5 22 50846850 rs150769945 G A 100 PASS RSQ=0.5386;THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.04,-5 0|0:0:-0,-2.11,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.58,-5 22 50846887 rs7511136 T G 100 PASS AC=1022;THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9659;VT=SNP;RSQ=0.9508;SNPSOURCE=LOWCOV;LDAF=0.4674;ERATE=0.0102;AF=0.47;ASN_AF=0.73;AMR_AF=0.44;AFR_AF=0.4;EUR_AF=0.33 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-2.02,-5 0|1:0.65:-0.01,-1.55,-5 1|0:1.25:-5,-1.42,-0.02 0|0:0.3:-0.07,-0.85,-5 22 50846894 rs139213520 C T 100 PASS AC=7;ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9987;LDAF=0.0031;RSQ=0.826;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.01,-1.65,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.02,-1.35,-5 22 50846930 rs181569258 C T 100 PASS THETA=0.0009;ERATE=0.0004;RSQ=0.6902;AA=C;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.15,-0.53,-3.27 0|0:0:-0.04,-1.04,-5 0|0:0:-0.14,-0.57,-2.02 0|0:0:-0.06,-0.9,-5 0|0:0:-0.04,-1.1,-5 22 50846948 rs149528452 G A 100 PASS ERATE=0.0004;RSQ=0.6343;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-1,-5 0|0:0:-0.02,-1.36,-5 0|0:0:-0.08,-0.79,-3.18 0|0:0:-0.08,-0.78,-5 0|0:0:-0.06,-0.92,-5 22 50846993 rs186014113 C T 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.5229;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-2.44,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.03,-1.14,-5 22 50847050 rs190085532 T A 100 PASS AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;RSQ=0.7186;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-3.3,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.11,-0.64,-4.1 22 50847145 rs183374977 T G 100 PASS ERATE=0.0004;AA=T;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=3;RSQ=0.9267;THETA=0.0003;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.56,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-4.22,-5 22 50847159 rs7511602 T A 100 PASS ERATE=0.0004;AC=446;AA=T;AN=2184;VT=SNP;RSQ=0.9946;SNPSOURCE=LOWCOV;AVGPOST=0.9978;LDAF=0.205;THETA=0.0003;AF=0.2;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.97,-5 0|0:0:-0,-3.59,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-4.22,-5 22 50847162 rs185886613 A G 100 PASS ERATE=0.0004;AVGPOST=0.9994;AN=2184;RSQ=0.821;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;LDAF=0.0017;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.76,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-4.22,-5 22 50847206 rs191087278 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;RSQ=0.8664;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.96,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.02,-1.38,-5 0|0:0:-0,-2.39,-5 22 50847219 rs183734092 C T 100 PASS LDAF=0.0013;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;AC=2;RSQ=0.7257;AVGPOST=0.9992;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.95,-5 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AA=C;AN=2184;RSQ=0.4634;VT=SNP;THETA=0.0017;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AVGPOST=0.9987;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.19,-0.47,-2.25 0|0:0:-0.03,-1.13,-5 0|0:0:-0.03,-1.25,-5 22 50849528 rs141916233 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9611;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.005;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.06,-0.87,-5 22 50849572 rs59762075 T C 100 PASS THETA=0.0009;LDAF=0.457;AA=T;AN=2184;VT=SNP;AC=998;RSQ=0.9956;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9974;AF=0.46;ASN_AF=0.68;AMR_AF=0.43;AFR_AF=0.41;EUR_AF=0.33 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-3.15,-5 0|1:1:-5,0,-5 1|0:1:-5,-0.01,-1.53 0|0:0:-0,-2.86,-5 22 50849912 rs186570321 T G 100 PASS 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50853250 rs189781694 G T 100 PASS ERATE=0.0004;LDAF=0.0009;AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;RSQ=0.7373;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.17,-0.5,-2.81 0|0:0:-0,-4.22,-5 22 50853274 rs3934829 T C 100 PASS THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;AC=448;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.2054;RSQ=0.9989;AF=0.21;ASN_AF=0.26;AMR_AF=0.24;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-3.1,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0,-2.51,-5 22 50853347 rs145806508 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7282;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.11,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.1,-5 22 50853448 rs151134904 G A 100 PASS 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AA=C;THETA=0.0004;AN=2184;AC=8;RSQ=0.9496;AVGPOST=0.9996;VT=SNP;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.8,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0,-2.38,-5 22 50853952 rs77634136 C T 100 PASS AA=C;AC=18;LDAF=0.0083;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9701;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.65,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0.01,-1.8,-5 22 50853963 rs150312234 C T 100 PASS LDAF=0.0013;RSQ=0.7583;AN=2184;VT=SNP;AVGPOST=0.9993;AA=c;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.68,-5 0|0:0:-0,-2.69,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0.01,-1.81,-5 22 50854039 rs111805458 C T 100 PASS ERATE=0.0004;RSQ=0.9707;AA=T;AN=2184;LDAF=0.011;VT=SNP;AVGPOST=0.9993;AC=24;THETA=0.0006;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 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100 PASS THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.8689;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50854501 rs141059010 G T 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50854604 rs144767280 C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50854613 . T C 100 PASS AVGPOST=1;LDAF=0.0004;AA=T;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50854766 rs138777164 T C 100 PASS LDAF=0.0024;RSQ=0.9469;THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0,-2.23,-5 0|0:0:0,-5,-5 22 50854870 rs117947698 G A 100 PASS AA=G;AN=2184;ERATE=0.0009;VT=SNP;AC=9;LDAF=0.0049;AVGPOST=0.9964;RSQ=0.7153;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0041;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.39,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.04,-1.06,-5 22 50855067 rs141827386 T C 100 PASS AC=7;ERATE=0.0004;THETA=0.0002;AA=T;AN=2184;VT=SNP;LDAF=0.0039;SNPSOURCE=LOWCOV;RSQ=0.8093;AVGPOST=0.9982;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.21,-0.43,-1.97 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0|0:0:-0.18,-0.47,-3.06 22 50856938 rs6520168 A C 100 PASS AA=C;AN=2184;ERATE=0.0009;THETA=0.0005;AVGPOST=0.9783;VT=SNP;LDAF=0.3955;SNPSOURCE=LOWCOV;AC=875;RSQ=0.9693;AF=0.4;ASN_AF=0.68;AMR_AF=0.41;AFR_AF=0.2;EUR_AF=0.32 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.18,-0.47,-2.34 0|1:1:-0.48,-0.48,-0.48 1|0:1:-0.8,-0.4,-0.35 0|0:0:-0.18,-0.46,-3.04 22 50857140 rs7293044 G A 100 PASS ERATE=0.0005;AC=1701;LDAF=0.7778;AN=2184;RSQ=0.9864;VT=SNP;AA=A;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9937;AF=0.78;ASN_AF=0.85;AMR_AF=0.73;AFR_AF=0.85;EUR_AF=0.7 GT:DS:GL 0|1:1:-5,0,-5 1|0:0.9:-0.04,-1.07,-5 1|1:2:-3.06,-0.49,-0.17 1|1:2:-5,-1.91,-0.01 1|1:2:-5,-3.32,-0 22 50857403 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.001;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.44,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50857468 rs148811019 G A 100 PASS RSQ=0.9931;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;LDAF=0.0051;AVGPOST=0.9999;THETA=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50857613 rs11091015 T G 100 PASS AC=901;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.9998;LDAF=0.4123;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.41;ASN_AF=0.68;AMR_AF=0.41;AFR_AF=0.22;EUR_AF=0.33 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.02,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50857700 rs182684645 G A 100 PASS RSQ=0.9181;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.07,-0.81,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0.1:-0,-3.12,-5 1|0:1:-5,0,-5 22 50857705 rs186505122 G A 100 PASS AC=7;ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;LDAF=0.0032;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9188;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.49,-5 0|0:0:0,-5,-5 22 50857832 rs149262092 G T 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0023;AC=5;RSQ=1;ERATE=0.0003;THETA=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50857842 . G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50857916 rs142508420 G A 100 PASS AVGPOST=1;LDAF=0.0009;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50857917 rs184599958 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;RSQ=0.9499;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50858000 rs189118046 A C 100 PASS THETA=0.0004;AN=2184;LDAF=0.001;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.9009;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:0,-5,-5 22 50858003 rs78116135 C A 100 PASS LDAF=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.8999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.14,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 22 50858006 rs193134995 G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-4.7,-5 22 50858120 rs8139476 C T 100 PASS AA=T;AN=2184;AVGPOST=0.9981;VT=SNP;RSQ=0.997;LDAF=0.4104;AC=896;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0006;AF=0.41;ASN_AF=0.68;AMR_AF=0.41;AFR_AF=0.23;EUR_AF=0.32 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0,-2.52,-5 0|0:0.05:-0.02,-1.29,-5 1|0:1:-5,0,-5 0|0:0:-0.01,-1.89,-5 22 50858150 rs185194448 C T 100 PASS AA=T;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6933;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.12,-5 0|0:0:-0,-4,-5 0|0:0:-0,-2.44,-5 0|0:0:-0.01,-1.94,-5 0|0:0:-0.01,-1.57,-5 22 50858151 rs140887115 G A 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;LDAF=0.0018;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.07,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-2.96,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.56,-5 22 50858265 rs144808345 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;RSQ=0.8027;VT=SNP;AVGPOST=0.9991;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.01,-1.59,-5 22 50858266 rs76192920 A G 100 PASS AC=18;LDAF=0.0083;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9893;THETA=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-1.96,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.02,-1.34,-5 22 50858287 rs7410540 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;LDAF=0.2031;VT=SNP;AC=443;RSQ=0.9949;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.2;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.64,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-2.35,-5 0|0:0:-0.12,-0.62,-3.85 22 50858363 rs12159194 C T 100 PASS AN=2184;AC=89;RSQ=0.9953;LDAF=0.0407;THETA=0.0005;AVGPOST=0.9996;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.04;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.1;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.4,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.03,-1.19,-5 0|0:0:-0.48,-0.48,-0.48 22 50858493 rs190171086 C T 100 PASS AA=C;AN=2184;RSQ=0.7082;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.04,-1.09,-5 22 50858518 rs181226354 C T 100 PASS AA=C;THETA=0.0002;AVGPOST=0.9994;AN=2184;RSQ=0.828;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.11,-0.64,-4 22 50858599 rs184203003 C T 100 PASS AC=12;THETA=0.0009;AA=C;AN=2184;VT=SNP;AVGPOST=0.9953;LDAF=0.0049;RSQ=0.6741;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0013 GT:DS:GL 0|0:0.1:-1.44,-0.02,-4.4 0|0:0:-0.08,-0.8,-3.38 0|0:0:-0.02,-1.46,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.48,-0.48,-0.48 22 50858674 rs115812776 C T 100 PASS RSQ=0.9885;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=25;LDAF=0.0114;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0,-1.98,-5 0|0:0:-0,-2.94,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-2.5,-5 0|0:0:-0.04,-1.11,-5 22 50858791 rs188093355 T C 100 PASS 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0|0:0.05:-0.48,-0.48,-0.48 22 50860114 rs7511543 T C 100 PASS AA=C;THETA=0.0002;LDAF=0.7969;AN=2184;ERATE=0.0093;VT=SNP;RSQ=0.7897;AC=1780;AVGPOST=0.9047;SNPSOURCE=LOWCOV;AF=0.82;ASN_AF=0.81;AMR_AF=0.78;AFR_AF=0.91;EUR_AF=0.78 GT:DS:GL 0|1:1.05:-5,-0.03,-1.23 1|1:1.75:-0.29,-0.43,-0.92 1|1:1.95:-0.48,-0.48,-0.48 1|1:1.75:-0.48,-0.48,-0.48 1|1:1.85:-0.48,-0.48,-0.48 22 50860115 rs182380947 G A 100 PASS ERATE=0.0005;LDAF=0.0053;AVGPOST=0.9957;AA=G;AN=2184;VT=SNP;AC=10;THETA=0.0011;SNPSOURCE=LOWCOV;RSQ=0.7228;AF=0.0046;AFR_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.97,-5 0|0:0:-0.3,-0.43,-0.91 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50860138 rs150704577 G T 100 PASS ERATE=0.0004;LDAF=0.0042;AA=G;AN=2184;VT=SNP;RSQ=0.7633;AC=9;SNPSOURCE=LOWCOV;AVGPOST=0.9974;THETA=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.29,-0.43,-0.92 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.64,-4.7 22 50860260 rs187094530 G A 100 PASS 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AVGPOST=1;THETA=0.0002;LDAF=0.457;AN=2184;VT=SNP;AA=A;RSQ=1;SNPSOURCE=LOWCOV;AC=999;ERATE=0.0003;AF=0.46;ASN_AF=0.68;AMR_AF=0.43;AFR_AF=0.41;EUR_AF=0.33 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.31,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50860509 rs182150615 C G 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.52,-5 0|0:0:-0.01,-1.71,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50860565 rs9616844 G A 100 PASS THETA=0.0002;RSQ=0.9996;AN=2184;LDAF=0.4571;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=999;ERATE=0.0003;AF=0.46;ASN_AF=0.68;AMR_AF=0.43;AFR_AF=0.41;EUR_AF=0.33 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.19,-5 0|1:1:-5,-0,-3.49 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50860573 rs12163227 T C 100 PASS AC=395;AA=T;AN=2184;VT=SNP;LDAF=0.1805;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.18;ASN_AF=0.42;AMR_AF=0.16;AFR_AF=0.04;EUR_AF=0.1 GT:DS:GL 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C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50860818 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50860819 . C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0001;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.0499;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50860825 . 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0|0:0:-0,-2.71,-5 0|0:0:-0.01,-1.61,-5 0|0:0:-0,-2.33,-5 22 50864143 rs149937922 G A 100 PASS AA=G;AN=2184;AC=8;AVGPOST=0.999;VT=SNP;THETA=0.0006;RSQ=0.9114;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.84,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.11,-0.64,-4 22 50864145 rs187196199 G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0019;RSQ=0.9535;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.7,-0.1,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.07,-0.85,-5 22 50864189 rs190134194 A G 100 PASS AA=G;AN=2184;RSQ=0.5846;VT=SNP;AVGPOST=0.9727;LDAF=0.0265;SNPSOURCE=LOWCOV;AC=39;THETA=0.0003;ERATE=0.0138;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.37,-5 0|1:0.7:-1.35,-0.02,-4.1 0|1:0.75:-1.65,-0.01,-3.14 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.34,-5 22 50864554 rs181592074 A T 100 PASS ERATE=0.0005;AN=2184;AVGPOST=0.9979;AC=16;LDAF=0.0079;VT=SNP;AA=A;SNPSOURCE=LOWCOV;RSQ=0.8988;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.13,-0.6,-3.7 0|0:0:-0.02,-1.34,-5 0|0:0:-0.18,-0.47,-3.06 22 50864556 rs186002364 A T 100 PASS ERATE=0.0004;AN=2184;AC=16;THETA=0.0005;VT=SNP;RSQ=0.9483;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.0077;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.13,-0.6,-3.7 0|0:0:-0.02,-1.33,-5 0|0:0:-0.18,-0.47,-3.06 22 50864571 rs144991265 G A 100 PASS AC=7;ERATE=0.0004;AVGPOST=0.9994;LDAF=0.0035;AA=G;AN=2184;RSQ=0.9347;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.13,-0.6,-3.7 0|0:0:-0.11,-0.64,-4 0|0:0:-0.07,-0.83,-5 22 50864601 rs149115222 T G 100 PASS THETA=0.0004;LDAF=0.0047;AA=T;AN=2184;VT=SNP;AC=9;RSQ=0.903;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.11,-0.64,-4 0|0:0:-0.07,-0.81,-5 22 50864655 rs143161483 T G 100 PASS AC=7;ERATE=0.0004;AVGPOST=0.9986;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.8694;LDAF=0.0038;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.85,-0.39,-0.34 0|0:0:-0.18,-0.47,-3.06 22 50864696 rs5770931 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;RSQ=0.9953;AC=1006;VT=SNP;AVGPOST=0.9969;SNPSOURCE=LOWCOV;LDAF=0.4604;THETA=0.0003;AF=0.46;ASN_AF=0.68;AMR_AF=0.43;AFR_AF=0.42;EUR_AF=0.33 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-3.11,-5 0|1:1:-5,0,-5 1|0:1:-2.18,-0.02,-1.46 0|0:0:-0.11,-0.66,-4.7 22 50864874 rs5770942 A G 100 PASS AC=1008;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9955;ERATE=0.0007;AVGPOST=0.9974;LDAF=0.4613;AF=0.46;ASN_AF=0.68;AMR_AF=0.43;AFR_AF=0.42;EUR_AF=0.33 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.85,-5 0|1:1:-5,-0,-4 1|0:1:-2.19,-0.02,-1.44 0|0:0:-0,-2.64,-5 22 50864985 rs190021932 C T 100 PASS AC=7;ERATE=0.0004;LDAF=0.0041;RSQ=0.8751;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9982;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.37,-0.24,-5 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0,-2.35,-5 22 50864986 rs182697427 G A 100 PASS ERATE=0.0005;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.3547;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0,-2.36,-5 22 50865002 rs186043912 G A 100 PASS AVGPOST=0.9986;LDAF=0.0016;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;RSQ=0.6646;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.12,-0.61,-3.92 0|0:0:-0.02,-1.41,-5 0|0:0:-0.15,-0.54,-2.94 0|0:0:-0,-2.08,-5 22 50865095 rs5770960 G C 100 PASS LDAF=0.7607;AA=C;AC=1662;THETA=0.0004;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.993;SNPSOURCE=LOWCOV;RSQ=0.985;AF=0.76;ASN_AF=0.94;AMR_AF=0.75;AFR_AF=0.71;EUR_AF=0.67 GT:DS:GL 1|0:1:-3.06,-0.46,-0.18 0|1:1:-1.59,-0.01,-2.71 0|1:0.95:-0.15,-0.54,-3.14 1|0:1:-4.4,-0.06,-0.89 0|0:0.05:-0.19,-0.45,-2.13 22 50865133 rs5770967 A G 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;ERATE=0.0008;AVGPOST=0.9909;LDAF=0.4592;SNPSOURCE=LOWCOV;AC=1004;RSQ=0.9865;AF=0.46;ASN_AF=0.68;AMR_AF=0.44;AFR_AF=0.42;EUR_AF=0.33 GT:DS:GL 0|0:0:-0.18,-0.48,-2.48 0|0:0:-0.22,-0.42,-1.84 0|1:0.95:-0.48,-0.48,-0.48 1|0:1:-4.1,-0,-2.85 0|0:0:-0.48,-0.48,-0.48 22 50865296 rs80052928 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;AC=40;VT=SNP;LDAF=0.0214;RSQ=0.8249;SNPSOURCE=LOWCOV;AVGPOST=0.9899;AF=0.02;ASN_AF=0.07 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.7,-4.4 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.19,-0.46,-2.17 22 50865309 rs190812175 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0019;RSQ=0.7043;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.49,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.19,-0.46,-2.16 22 50865338 rs5770813 C T 100 PASS AA=C;AN=2184;RSQ=0.9927;VT=SNP;AC=1000;ERATE=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9955;LDAF=0.4574;THETA=0.0007;AF=0.46;ASN_AF=0.68;AMR_AF=0.43;AFR_AF=0.41;EUR_AF=0.34 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.48,-0.48,-0.48 0|1:1:-5,-0.93,-0.05 1|0:1:-4.7,-0.02,-1.41 0|0:0:-0.12,-0.63,-3.92 22 50865416 rs8139455 G C 100 PASS ERATE=0.0005;AA=G;AN=2184;RSQ=0.9518;VT=SNP;AC=51;AVGPOST=0.9971;LDAF=0.0229;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.22,-0.42,-1.8 0|0:0:-0.22,-0.42,-1.79 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.56,-3.27 22 50865419 rs183862628 C T 100 PASS ERATE=0.0004;AVGPOST=0.9977;AA=C;RSQ=0.6344;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.22,-0.42,-1.8 0|0:0:-0.09,-0.75,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.56,-3.27 22 50865434 rs5770982 A G 100 PASS AC=973;LDAF=0.4444;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.9923;AA=A;ERATE=0.0008;AVGPOST=0.9956;SNPSOURCE=LOWCOV;AF=0.45;ASN_AF=0.66;AMR_AF=0.42;AFR_AF=0.41;EUR_AF=0.32 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.14,-0.57,-3.49 0|1:1:-0.05,-0.97,-5 1|0:1:-0.19,-0.46,-2.38 0|0:0:-0.14,-0.56,-3.28 22 50865462 rs150249377 G C 100 PASS ERATE=0.0005;LDAF=0.0068;AA=G;AN=2184;AC=13;VT=SNP;THETA=0.0006;RSQ=0.8566;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.15,-0.53,-3.12 0|0:0:-0.07,-0.85,-4.7 0|0:0:-0.01,-1.72,-5 0|0:0:-0.11,-0.67,-4.22 22 50865534 rs188855981 T C 100 PASS AC=7;ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.888;VT=SNP;LDAF=0.0038;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0,-2.12,-5 0|0:0:-0.48,-0.48,-0.48 22 50865647 rs192008173 G A 100 PASS ERATE=0.0004;AVGPOST=0.9977;THETA=0.0014;AA=G;AN=2184;RSQ=0.5385;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.02,-1.31,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.17,-0.5,-2.52 0|0:0:-0,-2.14,-5 22 50865684 rs182968032 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0011;LDAF=0.0006;RSQ=0.7318;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.48,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-3.55,-5 22 50865786 rs73441439 A G 100 PASS AC=52;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0238;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;RSQ=0.9932;AF=0.02;AMR_AF=0.01;AFR_AF=0.1 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-2.16,-5 22 50865851 rs187682556 A G 100 PASS THETA=0.0002;RSQ=0.9709;AN=2184;AC=8;LDAF=0.0037;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-3.17,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-2.04,-5 22 50865863 rs2334095 T A 100 PASS AN=2184;LDAF=0.4606;THETA=0.0005;VT=SNP;AA=A;AC=1007;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9975;AVGPOST=0.9984;AF=0.46;ASN_AF=0.68;AMR_AF=0.43;AFR_AF=0.42;EUR_AF=0.34 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-3.59,-5 0|1:1:-5,-0.01,-1.52 1|0:1:-4.4,-0,-2.91 0|0:0:-0.04,-1.06,-5 22 50865886 rs191757708 A T 100 PASS ERATE=0.0004;RSQ=0.7362;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-3.18,-5 22 50865923 rs138877150 T A 100 PASS AC=7;AA=T;AN=2184;RSQ=0.9895;LDAF=0.0032;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0034;AVGPOST=0.9999;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.37,-5 22 50865948 rs116486105 A G 100 PASS THETA=0.0009;ERATE=0.0004;AN=2184;VT=SNP;AC=67;AVGPOST=0.9993;AA=A;LDAF=0.0308;SNPSOURCE=LOWCOV;RSQ=0.99;AF=0.03;ASN_AF=0.08;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.89,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.34,-5 22 50866042 rs149431600 C T 100 PASS ERATE=0.0005;AA=C;AC=18;THETA=0.0004;AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0087;SNPSOURCE=LOWCOV;RSQ=0.9475;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0.26,-0.44,-1.06 0|0:0:-0.02,-1.31,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.02,-1.46,-5 22 50866043 rs184822162 G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;ERATE=0.001;LDAF=0.0022;AVGPOST=0.9973;SNPSOURCE=LOWCOV;RSQ=0.4742;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0.26,-0.44,-1.06 0|0:0:-0.31,-0.29,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.5,-5 22 50866078 rs189277774 T A 100 PASS ERATE=0.0004;AVGPOST=0.9986;LDAF=0.0009;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;RSQ=0.3634;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.04,-1.02,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.11,-0.65,-4.7 22 50866091 rs192411634 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9983;AN=2184;RSQ=0.5567;VT=SNP;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;LDAF=0.0017;AF=0.0009;AMR_AF=0.01 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G GT 304 PASS THETA=0.0015;ERATE=0.0052;LDAF=0.2107;AVGPOST=0.9636;AN=2184;VT=INDEL;AC=443;RSQ=0.918;AF=0.2;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-2.1,-19.2 0|0:0:0,-0.6,-5.5 0|0:0:0,0,0 0|0:0.15:0,-0.6,-5.5 0|0:0.2:0,0,0 22 50866165 . 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C CA 45 PASS AC=73;AN=2184;VT=INDEL;THETA=0.0041;AVGPOST=0.917;ERATE=0.0195;RSQ=0.4187;LDAF=0.0613;AF=0.03;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.05;EUR_AF=0.04 GT:DS:GL 0|0:0.2:0,-1.8,-14.7 0|0:0:0,-0.1,-0.3 0|0:0.15:0,0,0 0|0:0.2:0,0,0 0|0:0.05:0,0,0 22 50867231 rs147658749 G T 100 PASS ERATE=0.0005;RSQ=0.6782;AA=G;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AVGPOST=0.9992;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.14,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.07,-0.85,-5 22 50867268 rs5771043 G A 100 PASS ERATE=0.0005;LDAF=0.4135;AA=G;AN=2184;VT=SNP;THETA=0.0017;RSQ=0.9946;SNPSOURCE=LOWCOV;AC=904;AVGPOST=0.9965;AF=0.41;ASN_AF=0.68;AMR_AF=0.42;AFR_AF=0.23;EUR_AF=0.33 GT:DS:GL 0|0:0:-0,-2.99,-5 0|0:0:-0.07,-0.83,-5 0|1:1:-5,0,-5 1|0:0.85:-0.03,-1.14,-5 0|0:0:-0.19,-0.46,-2.17 22 50867288 rs149170853 G A 100 PASS RSQ=0.9813;AA=G;AN=2184;VT=SNP;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 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ERATE=0.0004;LDAF=0.0009;AA=C;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;RSQ=0.5742;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.44,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.6,-5 22 50868823 rs192981454 C A 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.7117;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=3;LDAF=0.0017;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-3.25,-5 0|0:0:-0,-3.09,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.01,-1.85,-5 22 50868925 rs4824127 A C 100 PASS ERATE=0.0005;RSQ=0.9958;AN=2184;AVGPOST=0.9972;LDAF=0.4495;VT=SNP;AA=A;AC=983;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.45;ASN_AF=0.66;AMR_AF=0.43;AFR_AF=0.41;EUR_AF=0.32 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.75,-5 0|1:1:-5,0,-5 1|0:1:-0.18,-0.48,-2.21 0|0:0:-0,-2.1,-5 22 50868965 rs114016055 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.9562;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 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LDAF=0.0004;AA=C;AN=2184;RSQ=0.8999;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.97,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869510 rs188750733 G A 100 PASS RSQ=0.9882;AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-2.9,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869664 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869667 rs143977998 T C 100 PASS LDAF=0.0004;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;RSQ=0.8999;VT=SNP;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869692 rs55712763 G C 100 PASS THETA=0.0009;RSQ=0.9958;LDAF=0.0202;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=44;AVGPOST=0.9998;ERATE=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869709 rs147275453 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;THETA=0.001;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869714 . C T 100 PASS ERATE=0.0004;RSQ=0.8036;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869757 rs112217367 C T 100 PASS AC=7;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9783;LDAF=0.0032;VT=SNP;THETA=0.0025;ERATE=0.0003;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869761 rs148637820 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0006;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869776 rs35376907 G T 100 PASS AC=7;AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0032;VT=SNP;ERATE=0.0003;RSQ=0.9947;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869795 rs181498134 A C 100 PASS RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AC=1;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50869865 rs144443562 G A 100 PASS AA=G;AN=2184;VT=SNP;AC=10;AVGPOST=0.9998;RSQ=0.9787;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0045;THETA=0.0003;AF=0.0046;ASN_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.21,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-3.38,-5 0|0:0:0,-5,-5 22 50869915 rs1005536 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;RSQ=0.9987;VT=SNP;AVGPOST=0.9993;AC=906;LDAF=0.4142;SNPSOURCE=LOWCOV;AF=0.41;ASN_AF=0.68;AMR_AF=0.42;AFR_AF=0.23;EUR_AF=0.33 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.01,-5 0|1:1:-1.6,-0.01,-2.84 1|0:1:-3.32,-0,-5 0|0:0:-0,-4.7,-5 22 50870038 rs185287040 G T 100 PASS RSQ=0.5966;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.14,-5 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rs149769173 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;RSQ=0.8553;AN=2184;AC=6;VT=SNP;AVGPOST=0.9991;LDAF=0.003;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0.03,-1.14,-5 22 50870918 rs181778705 G A 100 PASS AC=7;LDAF=0.0033;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.9792;ERATE=0.0003;THETA=0.0003;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.12,-0.62,-4.7 0|0:0:-0,-1.98,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.13,-5 22 50871002 rs186511221 G A 100 PASS ERATE=0.0004;THETA=0.0002;LDAF=0.0042;AA=G;AN=2184;AC=8;RSQ=0.8091;AVGPOST=0.9981;VT=SNP;SNPSOURCE=LOWCOV;AF=0.0037;ASN_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.17,-0.5,-1.95 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.11,-0.66,-4.7 22 50871041 rs145785259 T C 100 PASS 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50871249 rs5770850 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;AC=378;AVGPOST=0.9962;RSQ=0.9906;VT=SNP;LDAF=0.1731;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.17;ASN_AF=0.42;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.05,-1,-4.4 0|1:0.95:-0.24,-0.45,-1.17 1|0:1:-3,-0.48,-0.18 0|0:0:-0.01,-1.57,-5 22 50871305 rs183368591 G A 100 PASS ERATE=0.0005;THETA=0.0002;AA=G;AN=2184;VT=SNP;RSQ=0.7152;AVGPOST=0.9988;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.05,-1,-4.4 0|0:0:-0.07,-0.84,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.7 22 50871492 rs11091017 C G 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.4801;RSQ=0.9978;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=1049;AF=0.48;ASN_AF=0.75;AMR_AF=0.43;AFR_AF=0.42;EUR_AF=0.34 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.03,-1.22,-5 0|1:1:-5,-0.01,-1.88 1|0:1:-2.54,-0.27,-0.34 0|0:0:-0,-2.89,-5 22 50871595 rs188771428 G A 100 PASS 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AA=C;LDAF=0.0431;AN=2184;AC=93;THETA=0.0008;VT=SNP;RSQ=0.9275;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.992;AF=0.04;AMR_AF=0.01;AFR_AF=0.18 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.21,-0.46,-1.36 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 22 50873355 . G T 100 PASS THETA=0.0002;RSQ=0.7566;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.18,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.13,-0.6,-2.18 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.73,-5 22 50873356 . G T 100 PASS RSQ=0.8338;THETA=0.0014;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.26,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.74,-5 22 50873415 rs114588174 G A 100 PASS RSQ=0.98;LDAF=0.0024;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0006;AC=5;ERATE=0.0003;AVGPOST=0.9999;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.67,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-3.66,-5 0|0:0:-0,-4.4,-5 22 50873450 rs150134312 G T 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9767;VT=SNP;LDAF=0.0019;AC=4;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.38,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.28,-5 0|0:0:-0,-4,-5 22 50873451 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;AN=2184;LDAF=0.0018;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=4;ERATE=0.0003;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.36,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-3.85,-5 22 50873497 rs1134848 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9912;LDAF=0.0682;AC=148;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9987;AF=0.07;AMR_AF=0.1;AFR_AF=0.01;EUR_AF=0.14 GT:DS:GL 1|0:1:-4.7,-0,-5 0|0:0:-0,-2.67,-5 0|0:0:-0,-2.93,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-3.8,-5 22 50873542 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;RSQ=0.9844;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-3.06,-5 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-2.72,-5 0|0:0:-0.02,-1.47,-5 22 50873546 rs2273254 C T 100 PASS ERATE=0.0004;AA=C;LDAF=0.2484;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=543;VT=SNP;RSQ=0.9972;AVGPOST=0.9987;THETA=0.0003;AF=0.25;ASN_AF=0.33;AMR_AF=0.26;AFR_AF=0.17;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-3.49,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.01,-1.49,-5 22 50873557 rs2273255 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=543;RSQ=0.9954;VT=SNP;LDAF=0.2486;AVGPOST=0.9978;ERATE=0.0003;THETA=0.0003;AF=0.25;ASN_AF=0.33;AMR_AF=0.26;AFR_AF=0.17;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.08,-0.79,-3.19 0|0:0:-0.15,-0.52,-5 0|0:0:-0.1,-0.7,-5 22 50873561 rs2273256 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=543;LDAF=0.2483;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.9971;AVGPOST=0.9987;AF=0.25;ASN_AF=0.33;AMR_AF=0.26;AFR_AF=0.17;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2,-5 0|0:0:-0.12,-0.62,-2.3 0|0:0:-0.02,-1.41,-5 0|0:0:-0.01,-1.66,-5 22 50873618 rs2273257 A G 100 PASS LDAF=0.173;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;AC=379;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.998;THETA=0.0003;AF=0.17;ASN_AF=0.42;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.11 GT:DS:GL 0|0:0:-0,-2.58,-5 0|0:0:-0.02,-1.3,-5 0|1:0.95:-0.03,-1.18,-5 1|0:1:-2.21,-0.01,-2.01 0|0:0:-0,-1.95,-5 22 50873644 rs2273258 G A 100 PASS AA=G;AN=2184;THETA=0.0001;VT=SNP;AC=439;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9985;AVGPOST=0.9995;LDAF=0.2011;AF=0.2;ASN_AF=0.24;AMR_AF=0.24;AFR_AF=0.1;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-3.09,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.17,-0.5,-2.83 0|0:0:-0.02,-1.35,-5 22 50873694 rs2273259 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;THETA=0.0005;LDAF=0.4827;VT=SNP;AC=1055;SNPSOURCE=LOWCOV;RSQ=0.998;AVGPOST=0.9987;AF=0.48;ASN_AF=0.75;AMR_AF=0.44;AFR_AF=0.43;EUR_AF=0.34 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.02,-5 0|1:1:-5,0,-5 1|0:1:-1.97,-0.01,-1.72 0|0:0:-0,-2.67,-5 22 50873736 rs148186524 G T 100 PASS ERATE=0.0005;AC=52;THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.0242;SNPSOURCE=LOWCOV;AVGPOST=0.9941;RSQ=0.9078;AF=0.02;ASN_AF=0.03;AMR_AF=0.1;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.59,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.18,-0.48,-2.17 0|0:0:-0.04,-1.07,-5 22 50873761 rs5770859 A G 100 PASS ERATE=0.0005;AVGPOST=0.9986;LDAF=0.4908;AN=2184;RSQ=0.9976;VT=SNP;AA=A;AC=1073;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.49;ASN_AF=0.76;AMR_AF=0.44;AFR_AF=0.43;EUR_AF=0.35 GT:DS:GL 0|0:0:-0,-2.16,-5 0|0:0:-0,-3.8,-5 0|1:1:-5,-0,-4.4 1|0:1:-0.1,-0.7,-4.7 0|0:0:-0.06,-0.86,-5 22 50873778 rs193285672 T C 100 PASS RSQ=0.5602;THETA=0.0002;AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.46,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.86,-5 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.07,-0.86,-5 22 50873924 rs12485118 T C 100 PASS AC=18;LDAF=0.0083;AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.9815;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.93,-5 0|0:0:-0,-2.56,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.36,-5 22 50874302 rs185072463 A G 100 PASS THETA=0.0002;AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.3982;AVGPOST=0.9976;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.04,-1.02,-5 0|0:0.2:-0.14,-0.56,-3.55 0|0:0:-0.01,-1.6,-5 22 50874352 rs5770869 C T 100 PASS LDAF=0.7174;AA=C;AN=2184;RSQ=0.9976;VT=SNP;SNPSOURCE=LOWCOV;AC=1569;ERATE=0.0003;AVGPOST=0.9987;THETA=0.0003;AF=0.72;ASN_AF=0.91;AMR_AF=0.72;AFR_AF=0.61;EUR_AF=0.65 GT:DS:GL 1|0:1:-5,-0,-3.21 0|1:1:-4.7,-0.04,-1.07 0|1:1:-4.1,-0,-4.22 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.86,-5 22 50874361 rs146946460 A G 100 PASS AN=2184;RSQ=0.9767;VT=SNP;LDAF=0.0019;AA=A;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0.07,-0.84,-4.4 0|0:0:-0.04,-1.03,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.88,-5 22 50874410 rs190413243 T C 100 PASS AVGPOST=0.9985;AA=T;AN=2184;VT=SNP;RSQ=0.5335;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0012;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.26,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.16,-0.51,-2.6 0|0:0:-0.02,-1.33,-5 22 50874435 rs181136201 C A 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.5888;VT=SNP;AVGPOST=0.9993;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.13,-0.61,-2.21 0|0:0:-0.16,-0.51,-2.6 0|0:0:-0,-2.6,-5 22 50874458 rs184198228 C T 100 PASS AA=C;THETA=0.0002;RSQ=0.7001;AN=2184;VT=SNP;AVGPOST=0.998;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0,-2.05,-5 22 50874462 rs138002306 T A 100 PASS ERATE=0.0004;THETA=0.0004;AA=T;AN=2184;RSQ=0.6105;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0,-2.29,-5 22 50874573 rs12484005 T G 100 PASS RSQ=0.8949;THETA=0.0004;AA=T;AN=2184;AC=13;VT=SNP;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.05,-0.97,-5 0|0:0:-0.26,-0.44,-1.07 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.19,-0.46,-2.17 22 50874611 rs112817867 G A 100 PASS AC=12;ERATE=0.0005;THETA=0.0002;AA=G;AN=2184;RSQ=0.8738;AVGPOST=0.9979;VT=SNP;LDAF=0.0059;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.07,-0.81,-3.44 0|0:0:-0.13,-0.59,-2.85 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.08,-0.79,-5 22 50874614 rs5770872 C T 100 PASS AC=1547;ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;LDAF=0.7077;VT=SNP;RSQ=0.9943;AVGPOST=0.9969;SNPSOURCE=LOWCOV;AF=0.71;ASN_AF=0.89;AMR_AF=0.7;AFR_AF=0.61;EUR_AF=0.64 GT:DS:GL 1|0:1:-3.09,-0.47,-0.18 0|1:1:-1.7,-0.02,-1.48 0|1:1:-5,-0.71,-0.09 1|0:1:-2.19,-0.01,-1.67 0|0:0:-0.07,-0.8,-5 22 50874851 rs78837601 G A 100 PASS THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0165;VT=SNP;AVGPOST=0.9998;ERATE=0.0011;AC=36;RSQ=0.9932;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.01,-1.63,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.02,-1.36,-5 0|0:0:-0.03,-1.16,-5 22 50874873 rs144758234 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0019;AC=4;ERATE=0.0003;RSQ=0.9323;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.27,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.09,-0.75,-5 22 50874893 rs13054572 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=502;AVGPOST=0.999;VT=SNP;RSQ=0.9981;ERATE=0.0003;LDAF=0.2301;AF=0.23;ASN_AF=0.14;AMR_AF=0.28;AFR_AF=0.18;EUR_AF=0.3 GT:DS:GL 1|0:1:-5,-0,-3.8 0|1:1:-5,-0,-2.87 0|0:0:-0,-2.51,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.09,-0.72,-5 22 50874899 rs112140355 T C 100 PASS ERATE=0.0005;AVGPOST=0.9986;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;LDAF=0.0126;RSQ=0.957;AC=27;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0,-2.52,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.22,-0.4,-5 0|0:0:-0.1,-0.71,-5 22 50874918 rs139650247 C T 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9386;AVGPOST=0.9996;VT=SNP;AC=5;LDAF=0.0025;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.06,-0.9,-5 22 50874929 rs12484603 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0089;AVGPOST=0.9995;AC=19;THETA=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.97,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.05,-1,-4.7 0|0:0:-0.02,-1.28,-5 0|0:0:-0.02,-1.34,-5 22 50874930 . G A 100 PASS THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.92,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.02,-1.3,-5 0|0:0:-0.03,-1.23,-5 22 50875032 rs180932529 G A 100 PASS THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.7622;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.12,-0.62,-3.15 0|0:0:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 22 50875116 rs185454247 C T 100 PASS AA=C;RSQ=0.6344;THETA=0.0004;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.39,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.09,-0.73,-4.7 0|0:0:-0.06,-0.89,-5 0|0:0:-0.11,-0.64,-4.7 22 50875231 rs116680783 C T 100 PASS AC=7;ERATE=0.0004;LDAF=0.0036;AA=C;THETA=0.0002;RSQ=0.7211;AN=2184;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AF=0.0032;ASN_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.21,-0.43,-1.94 0|0:0:-0.13,-0.59,-3.62 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50875340 rs191894385 G T 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;LDAF=0.0037;AC=6;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;RSQ=0.7309;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.06 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.01,-1.69,-5 22 50875426 rs144689093 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.7662;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0,-2.67,-5 0|0:0:-0.01,-1.87,-5 22 50875606 rs139462371 C A 100 PASS ERATE=0.0004;LDAF=0.0027;AN=2184;VT=SNP;AA=c;RSQ=0.7572;AC=5;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9982;AF=0.0023;ASN_AF=0.0035;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.02,-1.4,-5 0|0:0:-0.12,-0.61,-3.08 0|0:0:-0.12,-0.62,-3.15 0|0:0:-0.15,-0.53,-2.82 0|0:0:-0.12,-0.62,-5 22 50875626 rs182592944 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5237;AVGPOST=0.9982;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.36,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.08,-0.78,-3.85 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0.02,-1.32,-5 22 50875675 rs144199153 T C 100 PASS THETA=0.0004;AA=T;AN=2184;RSQ=0.9351;AVGPOST=0.999;VT=SNP;AC=14;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.17,-0.5,-2.83 0|0:0:-0,-2.32,-5 22 50875745 rs12167996 A T 100 PASS AVGPOST=0.9986;AN=2184;LDAF=0.2289;VT=SNP;AA=A;RSQ=0.997;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=499;THETA=0.0003;AF=0.23;ASN_AF=0.14;AMR_AF=0.28;AFR_AF=0.18;EUR_AF=0.3 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-2.02,-0,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.88,-5 22 50875748 rs186713300 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8064;AVGPOST=0.9995;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.23,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.1,-5 22 50875824 rs115849027 G C 100 PASS AC=17;THETA=0.0004;AA=G;AN=2184;RSQ=0.9796;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.008;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.04,-1.02,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-3.12,-5 22 50875912 . C G 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8803;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.54,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50875992 . T C 100 PASS AVGPOST=1;AA=T;AN=2184;THETA=0.0005;VT=SNP;LDAF=0;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876021 rs146592285 C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876050 rs79508618 G A 100 PASS AVGPOST=1;AC=18;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.0017;THETA=0.0006;RSQ=0.9973;LDAF=0.0082;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876065 rs142423235 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.44,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876077 rs9306550 T C 100 PASS THETA=0.0009;AA=C;LDAF=0.8524;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.002;AC=1863;AVGPOST=0.9992;AF=0.85;ASN_AF=0.96;AMR_AF=0.79;AFR_AF=0.92;EUR_AF=0.76 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-5,0,-5 0|1:1:-5,-0,-4.1 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50876081 . G C 100 PASS LDAF=0.0009;AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.8472;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.3,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876156 rs117643240 T C 100 PASS THETA=0.0004;RSQ=0.9871;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;LDAF=0.0051;AVGPOST=0.9999;AF=0.01;ASN_AF=0.02 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.13,-0.6,-2.19 0|0:0:-0,-2.74,-5 0|0:0:-0.02,-1.26,-5 22 50876235 rs5770779 T C 100 PASS AC=1684;ERATE=0.0069;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9952;RSQ=0.9896;VT=SNP;LDAF=0.7709;AF=0.77;ASN_AF=0.95;AMR_AF=0.76;AFR_AF=0.62;EUR_AF=0.74 GT:DS:GL 1|1:2:-5,-4.7,-0 0|1:1:-5,0,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 0|1:1:-5,0,-5 22 50876243 rs151291667 C T 100 PASS RSQ=0.9462;AA=C;THETA=0.0032;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=10;ERATE=0.0003;LDAF=0.005;AVGPOST=0.9992;AF=0.0046;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.53,-5 0|1:1:-5,0,-5 22 50876294 rs191912498 G C 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.94,-5 0|0:0:-0.01,-1.81,-5 22 50876357 rs5770890 C G 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;ERATE=0.0047;VT=SNP;THETA=0.0059;AC=1425;AVGPOST=0.9955;LDAF=0.6524;RSQ=0.9932;AF=0.65;ASN_AF=0.84;AMR_AF=0.7;AFR_AF=0.39;EUR_AF=0.66 GT:DS:GL 1|0:1:-5,0,-5 0|1:1.1:-5,-0.1,-0.68 0|1:1.1:-5,-1.3,-0.02 1|0:1:-5,0,-5 0|0:0:-0,-2.51,-5 22 50876361 . A G 100 PASS RSQ=0.7143;AVGPOST=0.9994;AN=2184;VT=SNP;THETA=0.0011;AA=A;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0,-2.57,-5 0|0:0:-0,-3.21,-5 0|0:0:-0,-2.79,-5 22 50876452 rs182371519 G A 100 PASS AC=7;ERATE=0.0004;LDAF=0.0033;THETA=0.0002;AA=G;AN=2184;RSQ=0.8775;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.2,-0.44,-2.04 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876513 rs187087458 G A 100 PASS AC=12;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9921;AVGPOST=0.9999;LDAF=0.0055;AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.03,-1.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876526 rs11091018 C G 100 PASS AC=323;AA=C;AN=2184;RSQ=0.9944;VT=SNP;THETA=0.0006;AVGPOST=0.998;LDAF=0.148;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.15;ASN_AF=0.14;AMR_AF=0.21;AFR_AF=0.04;EUR_AF=0.19 GT:DS:GL 1|0:1:-5,0,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.67,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876612 . G T 100 PASS AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876640 rs189571888 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;AC=1;RSQ=0.8457;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876662 rs11555194 T G 100 PASS THETA=0.0004;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=80;ERATE=0.0009;VT=SNP;LDAF=0.0366;AVGPOST=0.9999;AA=t;AF=0.04;ASN_AF=0.04;AMR_AF=0.03;AFR_AF=0.04;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876708 . C T 100 PASS AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876731 . C T 100 PASS ERATE=0.0014;AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.61;LDAF=0.0019;AVGPOST=0.998;SNPSOURCE=EXOME;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0.01,-1.93,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876755 rs2070273 C T 100 PASS AC=370;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.1693;RSQ=0.9984;AF=0.17;ASN_AF=0.41;AMR_AF=0.15;AFR_AF=0.0041;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.91,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50876761 rs118082496 C A 100 PASS AC=12;LDAF=0.0053;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9665;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.15,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876767 . A G 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.64,-5 0|0:0:-0,-2.32,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876770 rs140626666 T C 100 PASS LDAF=0.0024;RSQ=0.9469;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;AC=5;ERATE=0.0003;AA=t;THETA=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.13,-5 0|0:0:-0,-2.56,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876775 rs59692226 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=34;RSQ=1;ERATE=0.0003;THETA=0.0003;LDAF=0.0155;AF=0.02;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.52,-5 0|0:0:-0,-2.58,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876903 rs182143622 G A 100 PASS ERATE=0.0004;AVGPOST=0.9986;RSQ=0.7379;LDAF=0.0021;THETA=0.0002;AA=g;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.06,-0.91,-4.7 0|0:0:-0.14,-0.59,-2.1 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50876925 rs73441459 C T 100 PASS AVGPOST=1;THETA=0.0002;AN=2184;AC=26;VT=SNP;RSQ=0.9983;LDAF=0.0119;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.21,-5 0|0:0:-0.01,-1.51,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50877144 rs45528946 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=41;LDAF=0.0189;RSQ=0.988;ERATE=0.0003;AVGPOST=0.9995;AF=0.02;ASN_AF=0.0017;AMR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50877156 . A C 100 PASS AVGPOST=1;THETA=0.0002;AN=2184;VT=SNP;LDAF=0;AA=A;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 22 50877166 rs4824131 G C 100 PASS RSQ=0.9992;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=1537;LDAF=0.7032;AVGPOST=0.9996;VT=SNP;ERATE=0.0003;AF=0.7;ASN_AF=0.93;AMR_AF=0.73;AFR_AF=0.47;EUR_AF=0.67 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-5,0,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50877203 rs186743399 C T 100 PASS AC=7;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0032;VT=SNP;AA=c;RSQ=0.9872;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.68,-5 0|0:0:-0,-2.53,-5 0|0:0:0,-5,-5 22 50877216 rs193091066 G C 100 PASS AC=7;AVGPOST=1;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0032;VT=SNP;ERATE=0.0003;RSQ=0.9947;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.03,-5 0|0:0:0,-5,-5 22 50877244 rs45581534 T C 100 PASS AVGPOST=1;THETA=0.0002;AA=T;AN=2184;VT=SNP;LDAF=0.0247;AC=54;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9991;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0,-3.36,-5 22 50877250 rs184097518 G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AVGPOST=0.9999;RSQ=0.9693;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0,-3.12,-5 22 50877296 rs150470435 C T 100 PASS RSQ=0.7274;AA=C;THETA=0.0002;LDAF=0.0016;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.05,-5 0|0:0:-0,-2.24,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.48,-0.48,-0.48 22 50877328 rs188198014 A T 100 PASS RSQ=0.5371;AVGPOST=0.9857;AN=2184;AC=13;ERATE=0.0044;LDAF=0.0109;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AA=a;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0.25:-1.77,-0.02,-1.51 0|0:0:-0.04,-1.09,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.11,-0.67,-5 22 50877338 rs147774162 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.7933;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.15,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.01,-1.5,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.11,-0.66,-5 22 50877388 rs28639928 C T 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;AC=34;RSQ=0.9725;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.0158;AF=0.02;AFR_AF=0.07 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.1,-0.67,-5 22 50877468 . T TCCAGCC 654 PASS THETA=0.0002;AN=2184;AC=77;RSQ=0.9689;AVGPOST=0.9975;VT=INDEL;ERATE=0.0006;LDAF=0.0354;AF=0.04;ASN_AF=0.04;AMR_AF=0.03;AFR_AF=0.04;EUR_AF=0.03 GT:DS:GL 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-9.1 0|0:0:0,-0.3,-3.7 22 50877692 rs76453420 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9302;VT=SNP;AVGPOST=0.9989;LDAF=0.0074;AC=15;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0,-2.49,-5 0|0:0:-0.48,-0.48,-0.48 22 50877718 rs5770908 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.3873;AC=847;RSQ=0.997;SNPSOURCE=LOWCOV;AF=0.39;ASN_AF=0.66;AMR_AF=0.4;AFR_AF=0.16;EUR_AF=0.32 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.03,-1.14,-5 0|1:1:-5,-1.49,-0.01 1|0:1:-5,0,-5 0|0:0:-0.11,-0.65,-4.7 22 50877762 rs114179499 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0018;VT=SNP;SNPSOURCE=LOWCOV;AC=3;RSQ=0.7921;THETA=0.0003;AVGPOST=0.9992;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0,-2.97,-5 0|0:0:-0.07,-0.84,-5 22 50877779 rs9617005 A G 100 PASS ERATE=0.0005;THETA=0.0002;AVGPOST=0.9983;AN=2184;LDAF=0.1864;AC=406;VT=SNP;RSQ=0.9948;AA=A;SNPSOURCE=LOWCOV;AF=0.19;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.02;EUR_AF=0.22 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.12,-0.62,-3.18 0|0:0:-0,-2.32,-5 0|0:0:-0.03,-1.13,-5 22 50877789 rs72490270 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;LDAF=0.0102;RSQ=0.9844;AVGPOST=0.9996;VT=SNP;AC=22;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0.01,-1.64,-5 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.01,-1.52,-5 0|0:0:-0.02,-1.34,-5 22 50877821 rs77494558 G A 100 PASS LDAF=0.0009;AA=G;AN=2184;VT=SNP;RSQ=0.6125;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9992;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.01,-1.63,-5 22 50877953 rs117618957 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;AC=14;SNPSOURCE=LOWCOV;LDAF=0.007;ERATE=0.0003;RSQ=0.884;THETA=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.63,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.61,-3.8 0|0:0:-0.11,-0.65,-4.7 22 50877962 . CCT C 242 PASS ERATE=0.0005;THETA=0.0004;AN=2184;AVGPOST=0.9972;VT=INDEL;AC=20;RSQ=0.8725;LDAF=0.0099;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.6,-11.3 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-5.1 0|0:0:0,-0.3,-3.2 22 50878100 rs149479606 C T 100 PASS RSQ=0.9049;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.55,-5 0|0:0:-0,-2.45,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0,-2.63,-5 0|0:0:-0,-2.7,-5 22 50878134 rs193177975 C T 100 PASS AC=7;LDAF=0.0033;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9799;VT=SNP;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.41,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-3.85,-5 0|0:0:-0,-4.7,-5 22 50878143 rs139053720 G A 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 22 50878183 rs143138513 C G 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0018;THETA=0.0005;VT=SNP;RSQ=1;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50878196 rs13057311 G A 100 PASS AVGPOST=0.9994;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.2122;VT=SNP;AC=463;ERATE=0.0003;THETA=0.0003;AF=0.21;ASN_AF=0.14;AMR_AF=0.27;AFR_AF=0.13;EUR_AF=0.29 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50878275 rs3197201 A G 100 PASS AVGPOST=1;LDAF=0.0151;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AC=33;RSQ=1;ERATE=0.0003;AF=0.02;ASN_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50878306 rs148238631 G C 100 PASS RSQ=0.9882;AVGPOST=1;ERATE=0.0013;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0019;AC=4;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50878409 . T A 100 PASS AVGPOST=1;AA=T;AN=2184;THETA=0.004;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50878419 . C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.9406;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=2;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50878441 rs141348790 T C 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50878449 rs45484793 G A 100 PASS AVGPOST=1;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0018;VT=SNP;RSQ=1;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50878546 rs118129949 C G 100 PASS AA=C;AC=48;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9912;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;LDAF=0.0221;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.05,-0.93,-4.7 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.24,-5 22 50878575 rs188621239 G A 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.48,-5 0|0:0:-0.2,-0.47,-1.44 0|0:0:-0.08,-0.76,-3.74 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.7,-5 22 50878626 rs5770920 A C 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9979;RSQ=0.9944;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;AC=375;LDAF=0.1715;AF=0.17;ASN_AF=0.41;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.02,-1.28,-5 0|1:1:-3.59,-0.04,-1.09 1|0:1:-1.6,-0.01,-5 0|0:0:-0.02,-1.44,-5 22 50878645 rs115671526 G A 100 PASS ERATE=0.0004;THETA=0.0015;RSQ=0.9827;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0444;AC=97;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.08;AMR_AF=0.02;AFR_AF=0.08;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.66,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-2.09,-5 22 50878891 rs56910115 GGTGA G 458 PASS RSQ=0.9698;AN=2184;AVGPOST=0.9869;LDAF=0.2063;VT=INDEL;THETA=0.0012;AC=454;ERATE=0.0006;AF=0.21;ASN_AF=0.14;AMR_AF=0.27;AFR_AF=0.12;EUR_AF=0.29 GT:DS:GL 1|0:1:-20.9,0,-6.5 0|1:1:0,0,0 0|0:0:0,-0.9,-23.8 0|0:0:0,0,0 0|0:0:0,-0.9,-22.1 22 50878896 . GTGAC G 184 PASS AC=433;AVGPOST=0.9664;AN=2184;ERATE=0.0044;RSQ=0.9206;VT=INDEL;THETA=0.0005;LDAF=0.1979;AF=0.2;ASN_AF=0.13;AMR_AF=0.24;AFR_AF=0.12;EUR_AF=0.28 GT:DS:GL 1|0:1:-7.8,0,-10.3 0|1:1:0,0,0 0|0:0:0,-0.9,-26.1 0|0:0:0,0,0 0|0:0:0,-0.9,-19.7 22 50878927 rs12171249 G A 100 PASS AC=483;ERATE=0.0004;AVGPOST=0.9946;AA=G;AN=2184;RSQ=0.989;VT=SNP;THETA=0.0046;SNPSOURCE=LOWCOV;LDAF=0.2215;AF=0.22;ASN_AF=0.15;AMR_AF=0.27;AFR_AF=0.17;EUR_AF=0.29 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-0.07,-0.84,-3.62 0|0:0:-0.01,-1.5,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.02,-1.31,-5 22 50878986 rs191876625 C T 100 PASS AC=7;LDAF=0.0036;AA=C;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.8843;ERATE=0.0003;THETA=0.0003;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.45,-1.13 0|0:0:-0.02,-1.31,-5 0|0:0:-0.03,-1.16,-5 22 50879067 rs62241890 G T 100 PASS ERATE=0.0005;AA=G;AN=2184;AC=13;AVGPOST=0.9981;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0065;RSQ=0.8969;AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50879089 rs183770241 G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AVGPOST=0.9999;RSQ=0.9693;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0,-2.39,-5 0|0:0:0,-5,-5 22 50879117 rs138127135 C T 100 PASS AA=C;RSQ=0.7337;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.05,-1.01,-4.22 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50879196 rs189622068 C T 100 PASS AA=C;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.97,-5 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50879257 rs181944432 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50879331 . G A 100 PASS LDAF=0.0009;RSQ=0.8857;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50879346 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50879354 . C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50879355 rs145508475 G A 100 PASS AVGPOST=1;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50879373 . G C 100 PASS THETA=0.0039;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.0028;SNPSOURCE=EXOME;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.9763;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50879447 rs2273260 T G 100 PASS ERATE=0.0067;AVGPOST=0.9817;AC=414;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;LDAF=0.1928;VT=SNP;RSQ=0.9568;AF=0.19;ASN_AF=0.26;AMR_AF=0.2;AFR_AF=0.1;EUR_AF=0.18 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.06,-0.91,-4 0|0:0.05:-0.33,-0.43,-0.79 0|0:0:-0.01,-1.73,-5 0|0:0:0,-5,-5 22 50879471 . C T 100 PASS RSQ=0.4436;LDAF=0.0013;AA=C;AVGPOST=0.9983;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0006;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.9,-5 0|0:0:-0.12,-0.61,-2.37 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-2.74,-5 22 50879486 . C T 100 PASS ERATE=0.0004;AA=C;LDAF=0.0016;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.6751;AVGPOST=0.9989;SNPSOURCE=EXOME;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.45,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-3.19,-5 0|0:0:-0,-2.92,-5 22 50879651 rs4824133 A G 100 PASS LDAF=0.7425;AA=G;AN=2184;VT=SNP;RSQ=0.9737;ERATE=0.0016;AC=1619;SNPSOURCE=LOWCOV;AVGPOST=0.9851;THETA=0.0003;AF=0.74;ASN_AF=0.91;AMR_AF=0.74;AFR_AF=0.65;EUR_AF=0.67 GT:DS:GL 1|0:1:-5,-0,-4.1 0|1:1:-1.64,-0.01,-4.1 0|1:1.05:-5,-0.71,-0.1 1|0:1:-5,0,-5 0|0:0:-0.06,-0.92,-5 22 50879748 . A AGTC 382 PASS AVGPOST=0.9963;AN=2184;VT=INDEL;RSQ=0.9683;AC=103;ERATE=0.0006;THETA=0.0003;LDAF=0.0476;AF=0.05;ASN_AF=0.08;AMR_AF=0.02;AFR_AF=0.07;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.9,-15 0|0:0:0,-0.6,-9.3 0|0:0:0,0,0 0|0:0:0,-0.3,-5 0|0:0:0,-0.9,-14.9 22 50879830 rs142796081 G C 100 PASS RSQ=0.7101;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=41;ERATE=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9832;LDAF=0.0221;AF=0.02;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.26,-0.44,-1.06 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.05,-0.96,-5 22 50879838 rs146055856 C T 100 PASS ERATE=0.0005;AA=C;RSQ=0.5819;AN=2184;LDAF=0.0032;VT=SNP;AVGPOST=0.9964;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.13,-0.59,-3.04 0|0:0:-0.25,-0.44,-1.09 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.09,-0.71,-4.7 22 50879931 rs5770930 G A 100 PASS AC=534;AA=G;AN=2184;VT=SNP;LDAF=0.2642;SNPSOURCE=LOWCOV;RSQ=0.8475;ERATE=0.0106;AVGPOST=0.9115;THETA=0.0003;AF=0.24;ASN_AF=0.43;AMR_AF=0.11;AFR_AF=0.2;EUR_AF=0.2 GT:DS:GL 0|0:0.05:-0.1,-0.67,-4.4 0|1:1.15:-3.06,-0.49,-0.17 0|1:0.9:-0.19,-0.46,-2.18 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.1 22 50879968 rs140086671 G A 100 PASS ERATE=0.0005;AVGPOST=0.9983;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.8462;AC=9;LDAF=0.0049;SNPSOURCE=LOWCOV;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.08,-0.77,-4.7 0|0:0:-0.08,-0.79,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.32,-5 22 50879989 rs189873302 A G 100 PASS ERATE=0.0004;AN=2184;VT=SNP;LDAF=0.0019;AA=A;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;RSQ=0.4418;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.04,-1.06,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.36,-5 22 50880003 rs181587648 C T 100 PASS ERATE=0.0005;LDAF=0.0013;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.406;AVGPOST=0.9982;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.04,-1.03,-5 0|0:0:-0.13,-0.6,-3.74 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.04,-1.08,-5 22 50880098 rs35273976 CAA C 572 PASS RSQ=0.8733;AVGPOST=0.9169;AN=2184;VT=INDEL;ERATE=0.013;LDAF=0.3769;AC=818;THETA=0.0003;AF=0.37;ASN_AF=0.65;AMR_AF=0.39;AFR_AF=0.17;EUR_AF=0.29 GT:DS:GL 0|0:0:0,-0.6,-12 0|0:0:0,0,0 0|1:1.1:0,0,0 1|0:0.95:0,-0.3,-6 0|0:0.1:0,-0.3,-6 22 50880136 rs77923049 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9989;AC=64;LDAF=0.0297;SNPSOURCE=LOWCOV;RSQ=0.983;AF=0.03;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.08,-0.79,-3.17 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.13,-0.58,-3.92 22 50880202 rs115875632 C T 100 PASS AVGPOST=0.9945;RSQ=0.8747;AA=C;AN=2184;LDAF=0.0168;VT=SNP;THETA=0.0006;AC=33;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.02;AFR_AF=0.06;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.13,-0.6,-3.8 0|0:0:-0.12,-0.63,-4 0|0:0:-0.18,-0.46,-2.43 0|0:0:-0.02,-1.45,-5 22 50880229 rs144788447 G A 100 PASS THETA=0.0002;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6646;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.02,-1.42,-5 22 50880315 rs148549498 A G 100 PASS ERATE=0.0005;AN=2184;THETA=0.0005;VT=SNP;AA=A;RSQ=0.4999;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.04,-1.03,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.01,-1.9,-5 22 50880338 rs142918751 G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.5857;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.04,-1.03,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.38,-5 22 50880391 rs76867505 C T 100 PASS ERATE=0.0004;AVGPOST=0.9963;RSQ=0.9772;AA=C;LDAF=0.0745;AN=2184;VT=SNP;AC=162;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.07;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.17;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.13,-0.59,-2.94 0|0:0:-0.05,-1,-5 0|0:0:-0.19,-0.46,-2.17 22 50880570 rs147757534 A G 100 PASS ERATE=0.0005;THETA=0.0002;LDAF=0.0016;AN=2184;VT=SNP;RSQ=0.3908;AA=A;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9978;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.56,-2.98 0|0:0:-0.06,-0.89,-5 22 50880600 rs142615967 G A 100 PASS AVGPOST=0.9994;AA=G;AN=2184;RSQ=0.9386;VT=SNP;AC=9;LDAF=0.0044;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0041;ASN_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.1,-0.67,-4 0|0:0:-0.11,-0.65,-4.7 22 50880664 rs145063184 C T 100 PASS AC=7;LDAF=0.0041;AA=C;THETA=0.0002;AN=2184;RSQ=0.778;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0007;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.05,-0.97,-4.22 0|0:0:-0.07,-0.82,-5 0|0:0:-0.12,-0.62,-3.55 0|0:0:-0.11,-0.66,-5 22 50880700 rs114787465 C T 100 PASS AVGPOST=0.9985;LDAF=0.0088;AA=C;AC=18;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;RSQ=0.9256;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.06,-0.91,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.19,-0.46,-2.93 22 50880768 rs140787756 G A 100 PASS ERATE=0.0004;AVGPOST=0.9986;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=10;RSQ=0.8909;SNPSOURCE=LOWCOV;LDAF=0.005;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.2,-0.45,-2.14 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.48,-0.48,-0.48 22 50880781 rs5770794 C T 100 PASS RSQ=0.9695;LDAF=0.3825;AA=C;AN=2184;ERATE=0.0032;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=835;AVGPOST=0.9787;AF=0.38;ASN_AF=0.65;AMR_AF=0.39;AFR_AF=0.17;EUR_AF=0.32 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.07,-0.83,-5 0|1:0.95:-0.2,-0.45,-2.14 1|0:1:-2.18,-0.02,-1.47 0|0:0:-0.48,-0.48,-0.48 22 50880819 rs150101217 G A 100 PASS ERATE=0.0005;AVGPOST=0.9957;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=10;LDAF=0.0049;RSQ=0.6703;SNPSOURCE=LOWCOV;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.77,-4.7 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.2,-0.45,-2.08 22 50880836 rs111557883 G T 100 PASS AC=62;THETA=0.0032;AA=g;AN=2184;VT=SNP;AVGPOST=0.9959;LDAF=0.0297;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.946;AF=0.03;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.22 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.2,-0.45,-2.09 22 50880859 rs185991965 G A 100 PASS AVGPOST=0.9957;LDAF=0.0035;AA=G;AN=2184;VT=SNP;RSQ=0.5049;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.001;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.46,-2.43 0|0:0:-0.37,-0.42,-0.72 22 50880959 rs55957213 CTTAAAGT C 971 PASS AN=2184;AC=434;VT=INDEL;ERATE=0.001;LDAF=0.1968;RSQ=0.9541;AVGPOST=0.9793;THETA=0.0003;AF=0.2;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.09;EUR_AF=0.21 GT:DS:GL 0|0:0:0,-1.8,-68.7 0|0:0:0,-0.9,-35.9 0|0:0:0,-1.2,-48 0|0:0:0,0,0 0|0:0:0,-0.6,-24.1 22 50880981 rs112917593 T TTTTG 850 PASS RSQ=0.8678;AN=2184;AC=1461;VT=INDEL;ERATE=0.0113;AVGPOST=0.9096;LDAF=0.6473;THETA=0.0003;AF=0.67;ASN_AF=0.91;AMR_AF=0.71;AFR_AF=0.41;EUR_AF=0.63 GT:DS:GL 1|0:1:-13.7,0,-7.4 0|0:0.5:0,-0.6,-10.1 0|1:0.85:0,-0.6,-10.1 1|0:1:0,0,0 0|0:0.05:0,-0.6,-9.9 22 50881001 . CAG C 266 PASS THETA=0.0009;AVGPOST=0.9877;AN=2184;VT=INDEL;AC=363;ERATE=0.0008;RSQ=0.9683;LDAF=0.1658;AF=0.17;ASN_AF=0.4;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.1 GT:DS:GL 0|0:0:0,-0.9,-16.9 0|0:0:0,-0.6,-9.6 0|1:1:0,-0.3,-5.6 0|0:0.3:0,0,0 0|0:0.05:0,-0.6,-11.2 22 50881002 rs12485072 A G 100 PASS AC=18;AA=G;AN=2184;LDAF=0.0098;VT=SNP;AVGPOST=0.9956;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.8153;THETA=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.12,-0.62,-4 0|0:0.05:-0.12,-0.62,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.81,-5 22 50881065 rs182690204 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=66;ERATE=0.0011;SNPSOURCE=LOWCOV;LDAF=0.0334;AVGPOST=0.9861;RSQ=0.8291;AF=0.03;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0.05:-0.01,-1.65,-5 0|0:0:-0.15,-0.55,-2.8 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.43,-2.49 22 50881202 rs185906968 C T 100 PASS ERATE=0.0005;RSQ=0.3727;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9952;LDAF=0.0032;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.42,-1.79 0|0:0:-0.2,-0.45,-1.94 0|0:0:-0.48,-0.48,-0.48 22 50881253 rs113416558 T C 100 PASS RSQ=0.9185;AA=T;AN=2184;THETA=0.004;ERATE=0.0024;VT=SNP;AVGPOST=0.9608;LDAF=0.2277;AC=489;SNPSOURCE=LOWCOV;AF=0.22;ASN_AF=0.14;AMR_AF=0.28;AFR_AF=0.17;EUR_AF=0.29 GT:DS:GL 1|0:1:-2.3,-0.01,-1.56 0|1:1:-2.32,-0.04,-1.06 0|0:0:-0.21,-0.43,-1.83 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.56,-3.22 22 50881302 rs79713091 G A 100 PASS AVGPOST=0.9933;LDAF=0.1894;AA=g;THETA=0.0004;AN=2184;AC=411;VT=SNP;RSQ=0.9833;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.19;ASN_AF=0.4;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.12,-0.63,-3.25 0|1:1:-2.8,-0.5,-0.17 1|0:1:-2.9,-0.46,-0.19 0|0:0:-0.19,-0.46,-2.15 22 50881443 rs111249398 A T 100 PASS RSQ=0.9065;AN=2184;LDAF=0.1809;THETA=0.0005;VT=SNP;AVGPOST=0.9623;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0015;AC=396;AF=0.18;ASN_AF=0.25;AMR_AF=0.22;AFR_AF=0.1;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50881474 rs145431338 G A 100 PASS THETA=0.0026;AA=g;AN=2184;LDAF=0.0423;VT=SNP;AC=54;ERATE=0.0039;RSQ=0.4718;AVGPOST=0.9435;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.03;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.25,-0.4,-1.41 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50881518 rs4824135 A G 100 PASS AC=910;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9361;AA=A;AVGPOST=0.9588;SNPSOURCE=LOWCOV;ERATE=0.0058;LDAF=0.4107;AF=0.42;ASN_AF=0.39;AMR_AF=0.51;AFR_AF=0.24;EUR_AF=0.51 GT:DS:GL 1|0:1:-2.61,-0.01,-1.7 0|1:1:-0.02,-1.26,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.15,-0.55,-3.14 22 50881544 rs146066673 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.6022;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.02,-1.32,-5 22 50881554 rs138788128 G A 100 PASS ERATE=0.0004;AVGPOST=0.9985;THETA=0.0004;LDAF=0.0042;AA=G;AN=2184;AC=8;VT=SNP;RSQ=0.8366;SNPSOURCE=LOWCOV;AF=0.0037;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.53,-5 22 50881650 rs183756003 G A 100 PASS THETA=0.0004;AA=G;AN=2184;RSQ=0.5535;LDAF=0.001;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.01,-1.57,-5 22 50881652 rs141473259 A G 100 PASS AN=2184;LDAF=0.0043;AVGPOST=0.9996;VT=SNP;RSQ=0.9554;THETA=0.0006;AA=A;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.01,-1.59,-5 22 50881674 rs150862168 G T 100 PASS AC=7;ERATE=0.0005;RSQ=0.7362;AA=G;AN=2184;THETA=0.0038;VT=SNP;AVGPOST=0.9976;LDAF=0.0039;SNPSOURCE=LOWCOV;AF=0.0032;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.28,-5 0|0:0:-0,-2.21,-5 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.01,-1.87,-5 22 50881676 rs139304702 T A 100 PASS LDAF=0.0009;RSQ=0.562;AA=T;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.03,-1.23,-5 0|0:0:-0.01,-1.59,-5 0|0:0:-0.87,-0.39,-0.34 0|0:0:-0,-2.13,-5 22 50881691 rs35963538 T C 100 PASS AC=7;ERATE=0.0005;AA=T;AN=2184;LDAF=0.004;VT=SNP;THETA=0.0027;RSQ=0.757;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.17,-0.5,-2.83 0|0:0:-0.01,-1.58,-5 22 50881733 rs150043124 C A 100 PASS AA=C;AN=2184;THETA=0.0031;VT=SNP;AVGPOST=0.9989;LDAF=0.0056;RSQ=0.9114;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.87,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.11,-0.65,-4.7 22 50881738 rs189125762 C T 100 PASS ERATE=0.0004;AN=2184;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0012;AC=2;RSQ=0.7802;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.54,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.18,-0.46,-2.43 0|0:0.05:-0.1,-0.67,-5 22 50881796 rs1056688 C G 100 PASS THETA=0.0009;LDAF=0.5807;AA=G;AN=2184;AC=1275;VT=SNP;RSQ=0.9716;AVGPOST=0.982;ERATE=0.0011;SNPSOURCE=LOWCOV;AF=0.58;ASN_AF=0.53;AMR_AF=0.6;AFR_AF=0.68;EUR_AF=0.56 GT:DS:GL 1|0:0.95:-0.1,-0.67,-4.7 0|1:1:-2.23,-0.02,-1.48 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0.17,-0.5,-2.83 0|0:0:-0.11,-0.66,-4.7 22 50881853 rs192630388 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0032;VT=SNP;RSQ=0.5617;AVGPOST=0.9964;SNPSOURCE=LOWCOV;THETA=0.0013;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.06,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.18,-0.46,-3.02 22 50881910 rs116764216 G A 100 PASS THETA=0.0009;AA=G;AN=2184;AVGPOST=0.9952;LDAF=0.0037;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;RSQ=0.5212;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.07,-0.81,-5 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.19,-0.46,-2.38 0|0:0:-0.02,-1.38,-5 22 50881954 rs4824136 G C 100 PASS AA=C;AN=2184;ERATE=0.0047;AVGPOST=0.9713;VT=SNP;AC=1752;RSQ=0.9344;LDAF=0.7979;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.8;ASN_AF=0.94;AMR_AF=0.67;AFR_AF=0.87;EUR_AF=0.71 GT:DS:GL 1|0:0.85:-0.03,-1.21,-5 0|1:1:-5,-0.02,-1.26 0|1:1:-0.05,-0.93,-5 1|0:1:-4.7,-0.02,-1.36 0|0:0:-0,-2.19,-5 22 50882026 rs141036745 C G 100 PASS AA=C;AN=2184;THETA=0.0031;VT=SNP;RSQ=0.8669;AVGPOST=0.9993;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.51,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0,-2.88,-5 22 50882116 rs71318818 CAGCAGA C 321 PASS THETA=0.0009;LDAF=0.0311;AN=2184;AVGPOST=0.9979;VT=INDEL;AC=67;RSQ=0.9725;ERATE=0.0003;AF=0.03;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-0.6,-22.6 0|1:1:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.9,-27 22 50882126 rs62241891 G A 100 PASS ERATE=0.0004;RSQ=0.9576;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9967;VT=SNP;AC=67;LDAF=0.0317;SNPSOURCE=LOWCOV;AF=0.03;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.28 0|0:0:-0.1,-0.71,-4.7 0|0:0:-0.01,-1.9,-5 22 50882135 rs144896241 G C 100 PASS AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;RSQ=0.6678;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.15,-0.54,-3.32 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.8,-4 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.61,-5 22 50882272 rs182962104 C T 100 PASS AA=C;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;THETA=0.0013;RSQ=0.8942;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.32,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.18,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.01,-1.88,-5 22 50882314 . C T 100 PASS ERATE=0.0005;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0011;AC=1;THETA=0.001;AVGPOST=0.9987;RSQ=0.4968;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.3,-5 0|0:0:-0.65,-0.11,-5 0|0:0:-0.05,-0.99,-4.1 0|0:0:-0.04,-1.02,-5 0|0:0:-0,-2.47,-5 22 50882317 . C A 100 PASS LDAF=0.0024;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.6298;AC=4;AVGPOST=0.9978;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.52,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.05,-0.96,-4 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.98,-5 22 50882323 . A C 100 PASS LDAF=0.0009;RSQ=0.8448;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0,-2.34,-5 0|0:0:-0.07,-0.82,-3.36 0|0:0:-0.02,-1.34,-5 0|0:0:-0,-2.32,-5 22 50882338 rs56269507 G A 100 PASS LDAF=0.0145;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=31;RSQ=0.9775;AVGPOST=0.9993;ERATE=0.0003;THETA=0.0003;AF=0.01;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-4,-5 0|1:1:-3.25,-0,-3.7 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-2.51,-5 22 50882367 . C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0006;RSQ=0.7756;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.04,-1.05,-4.4 0|0:0:-0,-2.32,-5 0|0:0:0,-5,-5 22 50882368 . G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;RSQ=0.8218;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0,-2.82,-5 0|0:0:0,-5,-5 22 50882376 rs187673185 G A 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.61,-5 0|0:0:0,-5,-5 22 50882385 . G A 100 PASS AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=0;RSQ=0.0784;LDAF=0.0002;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0,-3.24,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-3,-5 0|0:0:0,-5,-5 22 50882427 rs149021660 C T 100 PASS AC=12;RSQ=0.992;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.002;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0055;AF=0.01;ASN_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.47,-5 0|0:0:-0,-2.81,-5 0|0:0:-0,-2.37,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50882428 . G C 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0018;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;RSQ=0.8457;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.25,-5 0|0:0:-0,-3.02,-5 0|0:0:-0,-2.64,-5 0|0:0:0,-5,-5 0|0:0:-0.03,-1.2,-5 22 50882469 . G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0011;AVGPOST=0.9995;AC=2;RSQ=0.8272;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.14,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 22 50882494 rs75683035 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-3.7,-5 0|0:0:0,-5,-5 22 50882544 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50882572 . G T 100 PASS LDAF=0.0013;AA=G;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0011;SNPSOURCE=EXOME;AC=1;RSQ=0.5318;AVGPOST=0.9982;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.68,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50882589 rs151177518 C G 100 PASS ERATE=0.0005;RSQ=0.8687;AA=C;LDAF=0.0016;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0033;AVGPOST=0.9995;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.01,-1.69,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50882590 rs6010031 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=457;LDAF=0.209;ERATE=0.0019;AVGPOST=0.997;THETA=0.001;RSQ=0.9933;AF=0.21;ASN_AF=0.14;AMR_AF=0.27;AFR_AF=0.13;EUR_AF=0.29 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-5,-0.01,-1.58 0|0:0:-0.01,-1.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50882600 . C T 100 PASS AA=C;AN=2184;THETA=0.0005;RSQ=0.6318;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.89,-5 0|0:0:-0.01,-1.6,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50882635 rs140182883 G C 100 PASS RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0008;VT=SNP;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.41,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50882671 . G T 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0084;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-3.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50882828 rs79036281 G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.875;AVGPOST=0.9971;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0042;AC=19;LDAF=0.0091;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.95,-5 0|0:0:-0,-2.21,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.01,-1.67,-5 0|0:0:-0.02,-1.36,-5 22 50882908 rs145471981 C T 100 PASS THETA=0.0039;AA=C;RSQ=0.8356;AN=2184;VT=SNP;AC=31;LDAF=0.0166;SNPSOURCE=LOWCOV;AVGPOST=0.9931;ERATE=0.0006;AF=0.01;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.13,-0.6,-3.12 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.12,-5 0|0:0:-0.07,-0.85,-5 22 50882953 . CGGGGTG C 224 PASS RSQ=0.5528;LDAF=0.3421;AN=2184;VT=INDEL;THETA=0.0005;ERATE=0.0115;AC=691;AVGPOST=0.7473;AF=0.32;ASN_AF=0.31;AMR_AF=0.3;AFR_AF=0.33;EUR_AF=0.32 GT:DS:GL 0|1:0.65:0,0,0 0|0:0.4:0,0,0 0|0:0.35:0,0,0 0|0:0.2:0,0,0 0|1:0.7:0,0,0 22 50882965 . GGGGGT G 151 PASS THETA=0.0009;LDAF=0.238;AN=2184;RSQ=0.6265;AVGPOST=0.8224;VT=INDEL;ERATE=0.01;AC=456;AF=0.21;ASN_AF=0.24;AMR_AF=0.24;AFR_AF=0.2;EUR_AF=0.17 GT:DS:GL 0|0:0:0,-0.3,-2.7 0|0:0.1:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0.1:0,0,0 22 50883057 rs66609465 TG T 181 PASS ERATE=0.0642;THETA=0.0004;AN=2184;RSQ=0.5495;VT=INDEL;LDAF=0.3258;AVGPOST=0.7575;AC=570;AF=0.26;ASN_AF=0.21;AMR_AF=0.21;AFR_AF=0.26;EUR_AF=0.33 GT:DS:GL 1|0:1:0,0,-12.5 0|1:1.25:-8.2,-0.6,0 0|0:0.35:0,-0.9,-11 0|0:0.2:0,0,0 0|0:0.35:0,-0.3,-3.4 22 50883091 rs137996197 G C 100 PASS ERATE=0.0005;LDAF=0.0024;AA=G;AN=2184;AVGPOST=0.9979;THETA=0.0008;VT=SNP;RSQ=0.6761;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.67,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.02,-1.26,-5 22 50883133 rs141118790 C A 100 PASS ERATE=0.0004;LDAF=0.0024;AA=C;AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;RSQ=0.6608;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.59,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.06,-5 22 50883154 rs191750648 G A 100 PASS ERATE=0.0005;RSQ=0.6549;THETA=0.0022;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;LDAF=0.0029;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.61,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.34,-5 22 50883276 rs184206955 G A 100 PASS ERATE=0.0005;LDAF=0.0013;AA=G;AN=2184;VT=SNP;RSQ=0.4404;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AVGPOST=0.9982;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.71,-4.7 0|0:0:-0.03,-1.13,-5 22 50883359 rs1076780 A G 100 PASS ERATE=0.0005;AA=G;AN=2184;RSQ=0.952;VT=SNP;AC=1853;THETA=0.0019;SNPSOURCE=LOWCOV;AVGPOST=0.9829;LDAF=0.8437;AF=0.85;ASN_AF=0.95;AMR_AF=0.78;AFR_AF=0.92;EUR_AF=0.76 GT:DS:GL 1|0:1:-5,-0.03,-1.2 0|1:1:-2.28,-0.11,-0.65 0|1:1:-4.7,-0.26,-0.35 1|0:1:-2.98,-0.47,-0.18 0|0:0:-0.02,-1.34,-5 22 50883367 rs115114589 G A 100 PASS AC=17;ERATE=0.0005;AVGPOST=0.9985;AA=G;AN=2184;RSQ=0.934;VT=SNP;THETA=0.0006;LDAF=0.0085;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.08,-0.79,-3.34 0|0:0:-0.08,-0.79,-4 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.01,-1.61,-5 22 50883396 rs188985188 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8164;LDAF=0.0029;AC=5;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.01,-1.59,-5 22 50883404 rs144843011 C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=C;AN=2184;VT=SNP;RSQ=0.5007;THETA=0.0019;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.57,-5 22 50883411 rs9617007 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0018;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6734;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.04,-1.08,-5 22 50883414 rs185417974 G A 100 PASS THETA=0.0023;AA=G;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;RSQ=0.9267;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.04,-1.1,-5 22 50883435 rs190563498 G A 100 PASS AVGPOST=0.9985;LDAF=0.0016;AA=G;AN=2184;VT=SNP;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.5952;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.11,-5 22 50883461 rs181964772 C G 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=c;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;RSQ=0.6674;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.01,-1.86,-5 22 50883509 rs185843347 G A 100 PASS ERATE=0.0004;RSQ=0.6589;THETA=0.0015;AA=G;AN=2184;VT=SNP;AVGPOST=0.9988;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.03,-1.23,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.62,-5 22 50883528 rs189087291 T C 100 PASS THETA=0.0021;AA=T;AN=2184;AVGPOST=0.9962;VT=SNP;LDAF=0.0026;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;RSQ=0.4687;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.06,-0.9,-5 0|0:0:-0.03,-1.15,-5 22 50883595 rs58287635 T C 100 PASS AA=T;AN=2184;RSQ=0.8632;VT=SNP;LDAF=0.0474;SNPSOURCE=LOWCOV;ERATE=0.0029;AVGPOST=0.9835;THETA=0.0007;AC=91;AF=0.04;AMR_AF=0.03;AFR_AF=0.15;EUR_AF=0.01 GT:DS:GL 0|0:0.15:-0.18,-0.47,-2.42 0|0:0:-0.1,-0.7,-2.85 0|0:0:-0.18,-0.51,-1.62 1|0:0.65:-0.19,-0.46,-2.42 0|0:0:-0.34,-0.27,-3.42 22 50883603 rs181045264 C T 100 PASS AA=C;AN=2184;ERATE=0.0009;VT=SNP;LDAF=0.0026;AVGPOST=0.997;SNPSOURCE=LOWCOV;THETA=0.0016;RSQ=0.4956;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.19,-0.46,-2.32 0|0:0:-0.04,-1.03,-4.7 0|0:0:-0.12,-0.64,-2.39 0|0:0:-0.11,-0.65,-4 0|0:0:-0.1,-0.67,-4.4 22 50883610 rs186660468 C T 100 PASS AVGPOST=0.9986;AA=C;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;RSQ=0.6061;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.01,-1.79,-5 0|0:0:-0.07,-0.8,-3.25 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.07,-0.86,-5 22 50883626 rs138639268 G A 100 PASS LDAF=0.0021;AA=G;AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;RSQ=0.6196;AF=0.0018;AMR_AF=0.01;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.01,-1.51,-5 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.07,-0.83,-5 22 50883659 rs149363234 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.006;VT=SNP;AVGPOST=0.998;LDAF=0.002;SNPSOURCE=LOWCOV;RSQ=0.5938;AC=3;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-1.99,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.06,-0.89,-5 22 50883660 rs76275199 G A 100 PASS ERATE=0.0005;AVGPOST=0.9943;AN=2184;AC=84;VT=SNP;LDAF=0.0396;THETA=0.003;RSQ=0.9457;AA=A;SNPSOURCE=LOWCOV;AF=0.04;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.08 GT:DS:GL 0|1:1:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.49,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.06,-0.92,-5 0|1:0.95:-0.06,-0.87,-5 22 50883728 rs761744 G A 100 PASS AC=121;THETA=0.0061;RSQ=0.9017;AVGPOST=0.9857;AN=2184;LDAF=0.059;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0022;AF=0.06;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.14;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.04,-1.06,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.09,-5 22 50883855 rs190651952 G A 100 PASS AA=C;AN=2184;THETA=0.006;VT=SNP;AC=9;RSQ=0.4753;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0051;AVGPOST=0.9926;AF=0.0041;ASN_AF=0.0035;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.35,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.13,-0.6,-2.91 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.19,-0.45,-2.85 22 50883961 rs756014 G A 100 PASS ERATE=0.0165;LDAF=0.5846;AVGPOST=0.9416;RSQ=0.9056;AN=2184;VT=SNP;THETA=0.0006;AA=A;AC=1279;SNPSOURCE=LOWCOV;AF=0.59;ASN_AF=0.45;AMR_AF=0.58;AFR_AF=0.69;EUR_AF=0.62 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-4,-0,-3.49 0|0:0:-0.01,-1.91,-5 0|0:0:-0.11,-0.66,-3.85 0|0:0.1:-0.04,-1.09,-5 22 50883965 rs182779168 C T 100 PASS ERATE=0.0004;LDAF=0.0013;AA=C;AN=2184;VT=SNP;THETA=0.003;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.609;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.02,-1.25,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.04,-1.11,-5 22 50883998 rs143644134 C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;RSQ=0.7474;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.62,-5 22 50884075 rs743038 C T 100 PASS RSQ=0.928;AC=1013;AA=T;AN=2184;THETA=0.0038;ERATE=0.0126;VT=SNP;LDAF=0.4656;SNPSOURCE=LOWCOV;AVGPOST=0.9489;AF=0.46;ASN_AF=0.45;AMR_AF=0.54;AFR_AF=0.24;EUR_AF=0.58 GT:DS:GL 1|0:1:-5,-0,-2 0|1:1:-5,-0,-2.12 0|0:0.25:-0.22,-0.46,-1.27 1|0:1:-1.53,-0.01,-5 0|0:0:-0.04,-1.09,-5 22 50884153 rs186070029 G A 100 PASS AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;THETA=0.0033;LDAF=0.0026;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6994;ERATE=0.0006;AF=0.0018;ASN_AF=0.0035;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.04,-1.11,-5 0|0:0:-0.04,-1.09,-5 22 50884218 rs148122331 G A 100 PASS ERATE=0.0004;LDAF=0.0058;RSQ=0.8801;AA=G;AN=2184;VT=SNP;THETA=0.0017;SNPSOURCE=LOWCOV;AC=11;AVGPOST=0.9984;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0.05,-0.96,-5 0|0:0:-0.06,-0.89,-5 22 50884239 rs191028964 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.8156;LDAF=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.08,-0.76,-3.06 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.18,-0.47,-3.08 22 50884298 rs147304351 G A 100 PASS THETA=0.0021;ERATE=0.0004;RSQ=0.5878;LDAF=0.0016;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.04,-1.01,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.11,-0.66,-4.7 22 50884345 . CCCACCTGAGAGGA C 654 PASS LDAF=0.188;AN=2184;AC=378;VT=INDEL;THETA=0.0037;RSQ=0.7317;AVGPOST=0.8889;ERATE=0.0106;AF=0.17;ASN_AF=0.27;AMR_AF=0.18;AFR_AF=0.15;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-0.3,-19 0|0:0.1:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50884483 rs79894264 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;AC=6;VT=SNP;LDAF=0.0029;SNPSOURCE=LOWCOV;RSQ=0.9079;THETA=0.0064;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-2.49,-5 0|0:0:-0.13,-0.58,-3.38 0|0:0:-0.11,-0.65,-4.7 22 50884493 rs143322988 A C 100 PASS AN=2184;VT=SNP;AA=A;RSQ=0.5519;THETA=0.0012;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AVGPOST=0.995;AF=0.0014;ASN_AF=0.0017;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.58,-5 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.18,-0.47,-3.06 22 50884554 rs147546081 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0014;AN=2184;RSQ=0.9605;VT=SNP;AVGPOST=0.9971;AC=66;LDAF=0.031;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.09;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.03,-1.21,-5 0|0:0:-0.16,-0.51,-2.55 0|0:0:-0.02,-1.4,-5 22 50884788 . C CG 58 PASS AN=2184;VT=INDEL;THETA=0.0057;RSQ=0.6827;AVGPOST=0.9695;AC=63;LDAF=0.0359;ERATE=0.0007;AF=0.03;AMR_AF=0.03;AFR_AF=0.08;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.6,-6 0|0:0:0,0,0 0|0:0.3:0,0,0 0|0:0.35:0,0,0 0|0:0.3:0,0,0 22 50884798 rs55959194 C G 100 PASS AA=C;LDAF=0.0454;AN=2184;VT=SNP;AC=79;ERATE=0.0016;RSQ=0.7073;AVGPOST=0.966;SNPSOURCE=LOWCOV;THETA=0.0034;AF=0.04;ASN_AF=0.0035;AMR_AF=0.04;AFR_AF=0.11;EUR_AF=0.01 GT:DS:GL 0|0:0.15:-0.18,-0.48,-2.47 0|0:0:-0.14,-0.57,-2.13 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.11,-0.64,-4.7 22 50884806 rs59403049 C CCGGGTCT 687 PASS AC=464;THETA=0.0004;ERATE=0.018;AN=2184;RSQ=0.512;VT=INDEL;LDAF=0.2648;AVGPOST=0.7598;AF=0.21;ASN_AF=0.25;AMR_AF=0.16;AFR_AF=0.27;EUR_AF=0.17 GT:DS:GL 0|0:0.05:0,0,0 0|0:0.45:0,0,0 0|0:0.2:0,0,0 0|0:0.15:0,0,0 0|0:0.25:0,0,0 22 50884892 rs139400090 A C 100 PASS ERATE=0.0005;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9987;LDAF=0.0012;AC=2;RSQ=0.5332;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.07,-0.82,-4.22 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.02,-1.37,-5 22 50884904 rs149676235 A G 100 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9944;VT=SNP;RSQ=0.9352;LDAF=0.0333;AA=A;SNPSOURCE=LOWCOV;AC=71;THETA=0.0007;AF=0.03;ASN_AF=0.1;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.12,-0.61,-3.17 0|0:0:-0.02,-1.26,-5 0|0:0:-0.36,-0.41,-0.78 0|0:0:-0.02,-1.34,-5 22 50884922 rs187386678 C A 100 PASS ERATE=0.0004;AA=C;THETA=0.0054;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0012;AC=2;RSQ=0.7802;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.01,-1.48,-5 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.07,-0.85,-5 22 50885090 rs190647894 C T 100 PASS ERATE=0.0004;AA=T;AN=2184;RSQ=0.8381;VT=SNP;LDAF=0.0022;AC=5;SNPSOURCE=LOWCOV;THETA=0.0042;AVGPOST=0.9992;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.03,-1.18,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-2.43,-5 22 50885146 rs145443464 G A 100 PASS ERATE=0.0005;LDAF=0.0024;AVGPOST=0.9966;AA=g;AN=2184;THETA=0.0031;VT=SNP;SNPSOURCE=LOWCOV;AC=4;RSQ=0.5187;AF=0.0018;ASN_AF=0.0035;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.84,-5 0|0:0:-0,-3.52,-5 22 50885244 rs113982913 TTC T 340 PASS AC=266;THETA=0.0022;AN=2184;AVGPOST=0.9357;VT=INDEL;ERATE=0.0066;LDAF=0.1358;RSQ=0.8004;AF=0.12;ASN_AF=0.01;AMR_AF=0.14;AFR_AF=0.15;EUR_AF=0.18 GT:DS:GL 0|0:0:0,-1.8,-31.9 0|1:1:0,-0.3,-5.3 0|0:0:0,-0.3,-5.3 1|0:1:0,0,0 0|0:0.05:0,0,0 22 50885459 rs148435544 G A 100 PASS ERATE=0.0014;AA=G;AN=2184;LDAF=0.0148;VT=SNP;AC=15;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9793;RSQ=0.4821;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.25,-5 0|0:0:-0.33,-0.43,-0.79 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.01,-5 0|0:0:-0.09,-0.71,-4.7 22 50885495 rs1053764 A G 100 PASS AN=2184;RSQ=0.6696;VT=SNP;AC=22;THETA=0.0112;AA=A;ERATE=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9881;LDAF=0.0144;AF=0.01;AFR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.56,-3.55 0|0:0:-0.01,-1.6,-5 22 50885528 rs182855637 C T 100 PASS AA=C;RSQ=0.5418;AN=2184;AVGPOST=0.9947;AC=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0007;LDAF=0.005;AF=0.0027;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.42,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.02,-1.41,-5 0|0:0:-0.01,-1.61,-5 22 50885628 rs146489206 G A 100 PASS THETA=0.0014;AA=G;AN=2184;AVGPOST=0.999;LDAF=0.0015;VT=SNP;RSQ=0.7253;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.81,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50885649 rs141053122 A G 100 PASS RSQ=0.664;AN=2184;THETA=0.0008;VT=SNP;AA=A;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AVGPOST=0.9982;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-3.25,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50885696 rs188319673 G A 100 PASS THETA=0.0026;AA=g;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50885737 . C CG 81 PASS ERATE=0.0005;AN=2184;VT=INDEL;RSQ=0.7023;AC=24;THETA=0.0053;AVGPOST=0.9892;LDAF=0.0144;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.8,-20.2 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-7.4 0|0:0:0,0,0 22 50885775 rs1053744 A G 100 PASS AVGPOST=0.9543;ERATE=0.0663;AN=2184;RSQ=0.9335;VT=SNP;AA=A;SNPSOURCE=LOWCOV;LDAF=0.5255;AC=1149;THETA=0.0003;AF=0.53;ASN_AF=0.49;AMR_AF=0.56;AFR_AF=0.52;EUR_AF=0.55 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-5,0,-5 0|0:0:-0,-3.92,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50885795 rs192771726 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;AC=20;VT=SNP;THETA=0.0067;RSQ=0.9635;LDAF=0.0094;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50885871 rs144773853 G A 100 PASS LDAF=0.0024;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=4;RSQ=0.742;THETA=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50885893 rs56853707 CCA C 428 PASS RSQ=0.7514;AN=2184;VT=INDEL;ERATE=0.0501;AVGPOST=0.8172;THETA=0.0013;LDAF=0.4563;AC=988;AF=0.45;ASN_AF=0.77;AMR_AF=0.44;AFR_AF=0.14;EUR_AF=0.42 GT:DS:GL 1|1:1.7:-13.3,-0.9,0 0|0:0.1:0,-0.6,-11.2 0|0:0.55:0,0,0 0|1:0.85:0,0,0 1|0:1.25:-7.8,-0.6,0 22 50886032 rs184360634 G A 100 PASS THETA=0.0039;AA=G;AN=2184;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50886184 rs187765948 G T 100 PASS LDAF=0.0009;AA=G;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;RSQ=0.6828;ERATE=0.0003;AC=2;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.12,-0.61,-3.74 22 50886191 rs151229254 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.4963;LDAF=0.003;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AVGPOST=0.996;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.4,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.05,-0.95,-5 0|0:0:-0.03,-1.25,-5 22 50886220 rs5770980 T C 100 PASS AC=1529;THETA=0.0009;ERATE=0.0077;AA=T;AN=2184;VT=SNP;AVGPOST=0.9674;SNPSOURCE=LOWCOV;LDAF=0.6979;RSQ=0.9475;AF=0.7;ASN_AF=0.85;AMR_AF=0.72;AFR_AF=0.45;EUR_AF=0.74 GT:DS:GL 1|1:2:-5,-1.66,-0.01 0|1:1.1:-2.97,-0.48,-0.18 0|0:0:-0.03,-1.25,-5 1|0:1:-5,-0,-3.04 0|1:1:-5,-0.22,-0.4 22 50886233 rs76498749 A C 100 PASS ERATE=0.0005;AN=2184;AVGPOST=0.9979;THETA=0.0005;VT=SNP;RSQ=0.8803;AA=A;AC=14;LDAF=0.0074;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.12,-0.63,-3.32 0|0:0.05:-0.02,-1.26,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.59,-5 22 50886261 rs150406512 G A 100 PASS AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.8719;AVGPOST=0.9992;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.05,-0.99,-4.22 0|0:0:-0.03,-1.17,-5 0|0:0:-0.07,-0.85,-5 22 50886378 rs75075311 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.0054;THETA=0.0005;VT=SNP;AVGPOST=0.9993;RSQ=0.9396;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.41,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-2.12,-5 22 50886473 . T TC 236 PASS RSQ=0.8677;AN=2184;VT=INDEL;THETA=0.0005;AVGPOST=0.9976;AC=15;ERATE=0.0006;LDAF=0.008;AF=0.01;ASN_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.2,-14.9 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.9,-10.8 0|0:0:0,0,0 22 50886498 rs192444809 G C 100 PASS AVGPOST=1;LDAF=0.0009;RSQ=0.9768;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-2.45,-5 0|0:0:-0.01,-1.72,-5 22 50886520 rs184733740 G A 100 PASS ERATE=0.0005;AVGPOST=0.9986;LDAF=0.0021;AA=G;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.74;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.24,-5 0|0:0:-0,-2.38,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.44,-5 22 50886557 rs6010041 A G 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9822;AC=2036;LDAF=0.9318;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AF=0.93;ASN_AF=1;AMR_AF=0.85;AFR_AF=0.99;EUR_AF=0.88 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-3.62,-0 0|1:1:-5,-0.01,-1.62 1|0:1:-5,0,-5 0|1:1:-5,0,-5 22 50886714 rs138127298 G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;RSQ=0.8462;AVGPOST=0.9993;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.07,-0.84,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50886944 rs74598385 G A 100 PASS ERATE=0.0014;AVGPOST=0.9912;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=314;SNPSOURCE=LOWCOV;LDAF=0.1452;RSQ=0.9763;AF=0.14;ASN_AF=0.37;AMR_AF=0.14;AFR_AF=0.01;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.68,-5 0|1:1:-5,-0.82,-0.07 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50886945 rs143914297 T C 100 PASS ERATE=0.0004;AVGPOST=0.9994;THETA=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;RSQ=0.8693;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.27,-5 0|0:0:-0.01,-1.66,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50886949 rs146468883 C T 100 PASS AA=C;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=0.9175;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AVGPOST=0.9992;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.73,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50887014 rs188837124 C T 100 PASS AA=C;THETA=0.0044;AN=2184;VT=SNP;RSQ=0.9546;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AVGPOST=0.9999;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.75,-5 0|0:0:-0,-2.75,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50887131 rs181594642 A G 100 PASS THETA=0.0009;LDAF=0.0004;RSQ=0.8054;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50887135 rs117845086 C T 100 PASS AC=7;AA=C;AVGPOST=0.9994;LDAF=0.0035;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.9176;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 22 50887173 rs139127755 G T 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.003;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.8316;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50887242 rs143259371 A C 100 PASS AVGPOST=1;AN=2184;VT=SNP;THETA=0.0027;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.58,-5 0|0:0:0,-5,-5 22 50887263 rs144779289 T C 100 PASS ERATE=0.0004;LDAF=0.0041;AN=2184;AC=8;AVGPOST=0.999;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AA=t;RSQ=0.8911;AF=0.0037;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.02,-1.45,-5 0|0:0:0,-5,-5 22 50887285 rs116340071 C T 100 PASS AA=C;AN=2184;RSQ=0.9203;VT=SNP;AC=10;THETA=0.0059;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.0048;ERATE=0.0003;AF=0.0046;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0,-2.29,-5 22 50887323 rs148590310 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;THETA=0.0008;LDAF=0.001;VT=SNP;RSQ=0.8793;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-3.22,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-3.05,-5 22 50887332 rs115305696 G A 100 PASS AC=18;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;RSQ=0.9599;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0082;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.21,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-3.01,-5 22 50887374 rs9628258 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;AC=16;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.0076;RSQ=0.9337;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.59,-2.89 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.03,-5 22 50887497 rs185315968 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9979;THETA=0.0008;VT=SNP;LDAF=0.0019;ERATE=0.0008;RSQ=0.526;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.04,-1.01,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0,-2.1,-5 22 50887550 rs150720325 G A 100 PASS THETA=0.0009;ERATE=0.0005;AVGPOST=0.9957;RSQ=0.8692;AA=G;AN=2184;VT=SNP;AC=23;SNPSOURCE=LOWCOV;LDAF=0.0121;AF=0.01;ASN_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.04,-1.1,-5 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.8,-5 22 50887618 rs139052322 A G 100 PASS AVGPOST=0.9983;AN=2184;RSQ=0.6204;LDAF=0.0018;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.19,-0.45,-2.21 0|0:0:-0.02,-1.33,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.03,-1.12,-5 22 50887792 . T TCCCAG 363 PASS ERATE=0.0005;AN=2184;LDAF=0.0159;VT=INDEL;THETA=0.0008;AC=33;RSQ=0.9357;AVGPOST=0.9978;AF=0.02;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:0,-0.9,-18.4 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-12.3 0|0:0:0,0,0 22 50888118 rs59538325 CA C 330 PASS ERATE=0.0005;AN=2184;RSQ=0.9836;VT=INDEL;AC=127;LDAF=0.0585;THETA=0.0012;AVGPOST=0.9973;AF=0.06;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.21;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-2.4,-34.6 0|0:0:0,-0.9,-11.6 0|0:0:0,-0.9,-13 0|0:0:0,-0.9,-13 0|0:0:0,-1.2,-17.3 22 50888131 rs117930436 C T 100 PASS AC=17;AA=C;LDAF=0.0078;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.9888;ERATE=0.0003;AF=0.01;ASN_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.04,-1.11,-5 22 50888275 rs189769014 T C 100 PASS AA=T;AN=2184;VT=SNP;THETA=0.0018;RSQ=0.8803;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-3.36,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.58,-5 22 50888418 rs181459118 T A 100 PASS LDAF=0.0024;THETA=0.0002;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6843;AVGPOST=0.9978;ERATE=0.0003;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.02,-1.29,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.11,-0.66,-4.7 22 50888453 rs6010047 T A 100 PASS RSQ=0.9963;AA=T;AN=2184;VT=SNP;AC=123;SNPSOURCE=LOWCOV;THETA=0.0013;LDAF=0.0563;ERATE=0.0003;AVGPOST=0.9995;AF=0.06;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.2;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.11,-0.65,-4.7 22 50888476 rs186053532 C T 100 PASS ERATE=0.0004;AVGPOST=0.9986;LDAF=0.0024;AA=C;AN=2184;VT=SNP;RSQ=0.7832;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.04,-4.7 0|0:0:-0.07,-0.82,-4.7 0|0:0:-0.11,-0.66,-4.4 0|0:0:-0.04,-1.07,-5 22 50888600 rs6010049 G T 100 PASS AVGPOST=0.9986;THETA=0.0004;AA=G;AN=2184;AC=111;VT=SNP;LDAF=0.0513;SNPSOURCE=LOWCOV;RSQ=0.9919;ERATE=0.0003;AF=0.05;AMR_AF=0.02;AFR_AF=0.21 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0.02,-1.37,-5 22 50888611 rs143984375 C T 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;RSQ=0.9311;ERATE=0.0003;AVGPOST=0.9995;AF=0.0023;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0.01,-1.92,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.04,-1.11,-5 22 50888623 rs146470609 T A 100 PASS THETA=0.0014;AA=T;AN=2184;RSQ=0.9713;VT=SNP;AC=15;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0069;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.04,-1.1,-5 22 50888669 rs189889123 G A 100 PASS AA=G;AN=2184;RSQ=0.6105;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.02,-1.38,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.74,-5 22 50888672 rs139854353 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=g;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.8956;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.02,-1.38,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.21,-5 22 50888842 rs181770000 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;LDAF=0.0018;RSQ=0.551;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AVGPOST=0.9982;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0.2:-0.18,-0.47,-2.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4 0|0:0.05:-0.48,-0.48,-0.48 22 50888847 rs186502942 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AC=8;LDAF=0.0043;VT=SNP;THETA=0.0006;AVGPOST=0.9973;SNPSOURCE=LOWCOV;RSQ=0.7462;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.24,-0.4,-1.49 0|0:0:-0.22,-0.42,-1.75 0|0:0:-0.06,-0.89,-5 0|0:0:-0.22,-0.43,-1.78 22 50888923 rs7284639 C T 100 PASS ERATE=0.0005;RSQ=0.9885;LDAF=0.0576;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=125;AF=0.06;AMR_AF=0.02;AFR_AF=0.24 GT:DS:GL 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.23,-0.45,-1.23 0|0:0:-0.04,-1.05,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.03,-1.21,-5 22 50889188 rs190501526 C T 100 PASS LDAF=0.0009;RSQ=0.5852;AA=C;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0,-2.51,-5 0|0:0:-0,-2.46,-5 0|0:0:-0,-2.77,-5 0|0:0:-0,-3.34,-5 22 50889205 rs183598814 T C 100 PASS THETA=0.0009;AA=T;AN=2184;RSQ=0.7534;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0,-3.09,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-3.13,-5 22 50889253 rs188479066 C G 100 PASS ERATE=0.0004;AVGPOST=0.9986;AA=C;AN=2184;AC=6;THETA=0.0005;VT=SNP;LDAF=0.003;SNPSOURCE=LOWCOV;RSQ=0.8045;AF=0.0027;ASN_AF=0.01;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.15,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.04,-1.09,-5 22 50889316 rs145547001 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9972;VT=SNP;THETA=0.0011;RSQ=0.5121;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.67,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.02,-1.29,-5 22 50889707 rs6009949 C T 100 PASS AC=121;ERATE=0.0005;AA=C;AN=2184;RSQ=0.9714;VT=SNP;AVGPOST=0.9956;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0562;AF=0.06;AMR_AF=0.02;AFR_AF=0.23 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.2,-0.44,-2.15 0|0:0:-0.01,-1.5,-5 22 50889782 rs191398727 A T 100 PASS AVGPOST=1;LDAF=0.0004;AN=2184;RSQ=0.95;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;AA=a;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.02,-1.38,-5 22 50889886 rs9617010 G C 100 PASS AVGPOST=0.9864;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.004;RSQ=0.9801;LDAF=0.4963;AC=1083;AF=0.5;ASN_AF=0.4;AMR_AF=0.55;AFR_AF=0.39;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-1.2,-0.03 0|1:1:-0.62,-0.12,-5 0|0:0:-0,-3.3,-5 1|0:1:-2.96,-0,-5 0|1:1:-5,0,-5 22 50889953 rs77003593 G C 100 PASS ERATE=0.0004;AC=347;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.1582;SNPSOURCE=LOWCOV;AVGPOST=0.9968;RSQ=0.9918;AF=0.16;ASN_AF=0.42;AMR_AF=0.14;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-3.49,-5 0|1:1:-4.4,-0,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.01,-1.57,-5 22 50890009 rs117141973 A G 100 PASS THETA=0.0002;RSQ=0.9011;LDAF=0.0066;AN=2184;AC=13;AVGPOST=0.9981;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.34,-5 0|1:1:-5,-0,-4.4 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.01,-1.62,-5 22 50890043 rs78709184 G A 100 PASS 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0|0:0:-0,-3.92,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.21,-0.42,-5 0|0:0:-0,-2.65,-5 22 50890139 rs113695719 G C 100 PASS AA=G;AN=2184;RSQ=0.7359;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.31,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.61,-5 22 50890264 rs191376785 C T 100 PASS ERATE=0.0004;RSQ=0.5678;AN=2184;THETA=0.0005;VT=SNP;AA=c;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.43,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.12,-0.63,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.96 22 50890318 rs142369348 C T 100 PASS AN=2184;RSQ=0.6833;THETA=0.0008;VT=SNP;LDAF=0.0019;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9987;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.2,-0.45,-2.14 0|0:0:-0.19,-0.45,-2.16 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-5 22 50890338 rs12485030 G A 100 PASS 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AA=G;AN=2184;RSQ=0.7255;AVGPOST=0.9996;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0,-1.98,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.03,-1.14,-5 22 50892748 rs114255069 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;LDAF=0.0054;VT=SNP;AC=9;RSQ=0.818;SNPSOURCE=LOWCOV;AVGPOST=0.9974;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.61,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0.01,-1.49,-5 0|0:0:-0.05,-0.93,-5 22 50892875 rs114612053 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;AC=6;AVGPOST=0.9996;VT=SNP;RSQ=0.9341;LDAF=0.0029;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0,-2.04,-5 0|0:0:-0.21,-0.47,-1.35 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50893007 rs190945041 G A 100 PASS ERATE=0.0005;AVGPOST=0.9994;THETA=0.0047;AA=G;AN=2184;RSQ=0.6434;VT=SNP;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 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rs116526390 C T 100 PASS AC=17;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.9547;THETA=0.0003;AVGPOST=0.9992;LDAF=0.008;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.28,-5 0|0:0:-0.07,-0.83,-3.38 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50894026 rs115969873 G A 100 PASS LDAF=0.0042;AA=G;AN=2184;RSQ=0.9688;AVGPOST=0.9997;THETA=0.0005;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.01,-1.85,-5 0|0:0:-0,-2.31,-5 0|0:0:-0,-1.97,-5 22 50894104 rs117541098 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0342;SNPSOURCE=LOWCOV;AC=69;ERATE=0.0006;RSQ=0.8987;AVGPOST=0.991;AF=0.03;ASN_AF=0.0035;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:-0,-3.04,-5 1|0:1:-4.4,-0.02,-1.29 0|0:0:-0.13,-0.59,-2.13 0|0:0:-0.03,-1.17,-5 0|0:0:-0.02,-1.37,-5 22 50894139 rs186916646 T C 100 PASS 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C CG 568 PASS AN=2184;ERATE=0.0141;LDAF=0.6034;VT=INDEL;AC=1350;RSQ=0.8674;THETA=0.0016;AVGPOST=0.9141;AF=0.62;ASN_AF=0.42;AMR_AF=0.6;AFR_AF=0.8;EUR_AF=0.66 GT:DS:GL 1|1:2:-3.4,-0.6,0 0|1:0.6:0,0,0 0|0:0.05:0,0,0 0|0:0:0,-0.3,-3.7 0|1:1:0,0,0 22 50894372 rs8140014 T C 100 PASS ERATE=0.0005;AC=30;THETA=0.0002;AA=T;AN=2184;LDAF=0.0136;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9624;AVGPOST=0.9987;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;AFR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.58,-5 22 50894518 rs191610930 T C 100 PASS AA=T;AN=2184;THETA=0.0005;AVGPOST=0.9996;LDAF=0.001;VT=SNP;RSQ=0.8101;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.06,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.12,-0.63,-3.22 0|0:0:-0.01,-1.52,-5 0|0:0:-0.01,-1.63,-5 22 50894542 rs183064538 G A 100 PASS 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0|0:0:-0,-3.14,-5 22 50904150 rs141100839 A G 100 PASS LDAF=0.0036;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.6934;AA=A;ERATE=0.0008;AC=5;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.24,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-4.1,-5 22 50904173 rs149841428 G A 100 PASS RSQ=0.9336;THETA=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.12,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.01,-1.78,-5 0|0:0:0,-5,-5 22 50904223 rs185916020 G A 100 PASS ERATE=0.0118;AA=G;AN=2184;RSQ=0.7147;THETA=0.0005;VT=SNP;AVGPOST=0.9831;LDAF=0.0231;SNPSOURCE=LOWCOV;AC=36;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0.05:-0.4,-0.22,-5 0|0:0:-0.21,-0.42,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.62,-5 22 50904225 rs145862488 C T 100 PASS 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CG C 526 PASS AC=160;ERATE=0.0004;LDAF=0.0724;AN=2184;VT=INDEL;THETA=0.0005;RSQ=0.9712;AVGPOST=0.995;AF=0.07;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.17;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-0.9,-13 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.9,-11 0|0:0:0,-0.3,-4.3 22 50905451 rs188852156 G A 100 PASS RSQ=0.9405;THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.4,-5 0|0:0:-0,-3.52,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.11,-0.65,-3.74 0|0:0:-0.01,-1.64,-5 22 50905459 rs191154565 C T 100 PASS AA=C;RSQ=0.9227;AN=2184;VT=SNP;AC=5;THETA=0.0012;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0023;ASN_AF=0.0035;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-3.55,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.92,-0.06,-5 0|0:0:-0.11,-0.65,-3.74 0|0:0:-0,-2.1,-5 22 50905564 rs12628196 G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.1648;AC=361;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9951;AVGPOST=0.9982;AF=0.17;ASN_AF=0.28;AMR_AF=0.17;AFR_AF=0.06;EUR_AF=0.15 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AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7676;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50905850 rs146989767 G A 100 PASS RSQ=0.9722;LDAF=0.0024;AA=G;AN=2184;VT=SNP;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50905904 rs6010102 G A 100 PASS AA=G;AN=2184;THETA=0.0001;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0723;RSQ=0.9989;AC=158;AF=0.07;AMR_AF=0.02;AFR_AF=0.31 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50906103 rs148021361 T G 100 PASS THETA=0.0004;AA=T;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=0.9824;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 22 50906108 rs6010103 G A 100 PASS LDAF=0.0728;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9943;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=158;AF=0.07;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.3 GT:DS:GL 0|0:0:-0,-3.74,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.42,-5 22 50906143 rs115441766 G A 100 PASS ERATE=0.0004;LDAF=0.0024;AA=G;AN=2184;AVGPOST=0.9997;RSQ=0.9449;VT=SNP;AC=5;SNPSOURCE=LOWCOV;THETA=0.0029;AF=0.0023;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0,-2.03,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.03,-1.16,-5 22 50906146 rs7286288 G A 100 PASS ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.0722;SNPSOURCE=LOWCOV;RSQ=0.9951;AC=157;AVGPOST=0.9992;AF=0.07;AMR_AF=0.02;AFR_AF=0.3 GT:DS:GL 0|0:0:-0,-2.27,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-3.7,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.06,-0.91,-5 22 50906355 rs191369963 G A 100 PASS THETA=0.0004;RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.12,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50906464 rs141791402 G A 100 PASS AC=72;ERATE=0.0005;LDAF=0.0336;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.998;RSQ=0.9776;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.1;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.94,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.64,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-4.1,-5 22 50906518 rs1983679 G A 100 PASS THETA=0.0002;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;AC=620;LDAF=0.2843;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9968;AF=0.28;ASN_AF=0.11;AMR_AF=0.37;AFR_AF=0.15;EUR_AF=0.46 GT:DS:GL 1|1:2:-5,-3.27,-0 0|1:1:-0.04,-1.08,-5 0|0:0:-0.01,-1.5,-5 1|0:1:-0.17,-0.49,-2.78 0|1:1:-5,-0,-3.06 22 50906581 rs41280563 A G 100 PASS LDAF=0.193;AC=422;RSQ=0.9871;AN=2184;VT=SNP;AA=A;ERATE=0.0008;AVGPOST=0.9948;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.19;ASN_AF=0.29;AMR_AF=0.19;AFR_AF=0.08;EUR_AF=0.2 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-2.22,-5 0|0:0:-0,-3.06,-5 22 50906631 rs74959209 C T 100 PASS AA=C;THETA=0.0004;AN=2184;AC=6;RSQ=0.9132;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-2.2,-5 0|0:0:-0.01,-1.87,-5 0|0:0:-0.01,-1.89,-5 22 50906641 rs115523944 G A 100 PASS ERATE=0.0004;RSQ=0.891;THETA=0.0004;AA=G;AN=2184;AC=8;VT=SNP;AVGPOST=0.9989;LDAF=0.0038;SNPSOURCE=LOWCOV;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.93,-5 0|0:0:-0.07,-0.81,-3.42 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.01,-1.66,-5 22 50906735 rs184578601 G A 100 PASS LDAF=0.0009;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5467;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0,-3.4,-5 0|0:0:-0,-4,-5 22 50906887 rs187706496 C A 100 PASS RSQ=0.7196;AA=C;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50906895 rs79658113 G A 100 PASS AVGPOST=0.9963;AC=18;AA=G;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0043;SNPSOURCE=LOWCOV;RSQ=0.8377;LDAF=0.0091;AF=0.01;ASN_AF=0.0035;AFR_AF=0.03;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50906917 rs9616852 C A 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=622;RSQ=0.997;LDAF=0.2853;SNPSOURCE=LOWCOV;ERATE=0.0012;AVGPOST=0.9984;AF=0.28;ASN_AF=0.11;AMR_AF=0.38;AFR_AF=0.15;EUR_AF=0.46 GT:DS:GL 1|1:2:-5,-4.7,-0 0|1:1:-5,0,-5 0|0:0:0,-5,-5 1|0:1:-4.7,-0,-5 0|1:1:-5,0,-5 22 50907065 rs192615096 A G 100 PASS AN=2184;VT=SNP;RSQ=0.4196;AA=A;LDAF=0.0022;SNPSOURCE=LOWCOV;AVGPOST=0.9968;THETA=0.0007;AC=2;ERATE=0.0007;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.11,-0.66,-5 0|0:0:-0,-2.53,-5 0|0:0:-0,-2.01,-5 0|0:0:-0.4,-0.22,-5 0|0:0:-0.04,-1.07,-5 22 50907179 rs185155752 C G 100 PASS RSQ=0.6299;AA=C;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.07,-0.81,-5 0|0:0:-0,-2.4,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0,-3.36,-5 22 50907180 rs116116320 G A 100 PASS RSQ=0.968;AA=g;LDAF=0.0127;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=27;ERATE=0.0003;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0,-2.65,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-3.42,-5 22 50907195 rs55787804 G A 100 PASS THETA=0.0009;RSQ=0.9764;AA=G;AN=2184;AVGPOST=0.9878;VT=SNP;LDAF=0.2295;ERATE=0.0016;SNPSOURCE=LOWCOV;AC=499;AF=0.23;ASN_AF=0.11;AMR_AF=0.28;AFR_AF=0.12;EUR_AF=0.36 GT:DS:GL 1|1:1.95:-5,-0.68,-0.1 0|1:1:-5,-0,-4.7 0|0:0:-0,-2.14,-5 0|0:0:-0.06,-0.89,-5 0|1:1:-5,-0.89,-0.06 22 50907370 rs73172226 G A 100 PASS ERATE=0.0004;THETA=0.0002;LDAF=0.0371;RSQ=0.924;AA=G;AN=2184;VT=SNP;AC=78;SNPSOURCE=LOWCOV;AVGPOST=0.9925;AF=0.04;ASN_AF=0.0017;AMR_AF=0.1;AFR_AF=0.002;EUR_AF=0.05 GT:DS:GL 0|0:0.1:-0.05,-0.95,-5 0|0:0:-0.09,-0.73,-4.7 1|0:1:-2.19,-0.13,-0.6 0|1:0.85:-2.22,-0.01,-1.66 0|0:0.45:-0.03,-1.12,-5 22 50907421 rs190399865 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6171;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.17,-0.5,-2.84 0|0:0:-0,-2.18,-5 22 50907508 rs12484842 C T 100 PASS AA=C;AN=2184;AC=16;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.97;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0034;LDAF=0.0075;AF=0.01;ASN_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.04,-1.09,-5 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.02,-1.4,-5 22 50907614 rs141981810 C T 100 PASS AA=C;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;RSQ=0.5157;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.17,-0.52,-1.77 0|0:0:-0.19,-0.46,-2.22 0|0:0:-0.06,-0.92,-5 0|0:0:-0.06,-0.87,-5 22 50907706 rs55996881 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;LDAF=0.0105;RSQ=0.9072;THETA=0.0005;VT=SNP;AC=22;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.18,-0.48,-2.17 0|0:0:-0.06,-0.89,-5 22 50907729 rs146296612 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.6092;LDAF=0.0019;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.01,-1.64,-5 22 50907761 rs79598073 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=6;VT=SNP;THETA=0.0006;LDAF=0.0029;RSQ=0.8784;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.04,-1.09,-5 0|0:0:-0.01,-1.65,-5 22 50907773 rs181119353 A G 100 PASS AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9976;AA=A;RSQ=0.6974;LDAF=0.003;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.12,-0.63,-3.28 0|0:0:-0.13,-0.6,-2.18 0|0:0:-0.06,-0.91,-5 0|0:0:-0.03,-1.17,-5 22 50907855 rs5771044 C T 100 PASS AA=T;AN=2184;AC=1814;VT=SNP;AVGPOST=0.9913;RSQ=0.9776;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;LDAF=0.8281;AF=0.83;ASN_AF=0.95;AMR_AF=0.77;AFR_AF=0.88;EUR_AF=0.74 GT:DS:GL 1|1:2:-3.09,-0.47,-0.18 0|1:1:-0.2,-0.44,-2.1 0|1:1:-2.16,-0.04,-1.13 1|0:1:-4.7,-0.02,-1.41 0|1:1:-3.4,-0.47,-0.18 22 50907891 rs144245649 G A 100 PASS ERATE=0.0004;LDAF=0.0033;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;RSQ=0.731;THETA=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.08,-0.78,-3.12 0|0:0:-0.15,-0.55,-3 0|0:0:-0.11,-0.65,-4.7 22 50907981 rs79257539 G T 100 PASS ERATE=0.0004;RSQ=0.9695;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=179;AVGPOST=0.9938;SNPSOURCE=LOWCOV;LDAF=0.0824;AF=0.08;ASN_AF=0.02;AMR_AF=0.05;AFR_AF=0.2;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.08,-0.76,-5 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.98,-5 0|0:0:-0.06,-0.89,-5 22 50908050 rs144343946 G C 100 PASS LDAF=0.0021;AA=G;AN=2184;VT=SNP;RSQ=0.4058;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9968;ERATE=0.0006;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.27,-5 0|0:0:-0.08,-0.8,-4.7 0|0:0:-0.05,-1,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.11,-5 22 50908081 rs148782052 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9962;RSQ=0.4186;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.12,-0.6,-3.05 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.07,-5 22 50908368 rs142403808 T C 100 PASS THETA=0.0002;AN=2184;LDAF=0.0018;RSQ=0.3464;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AA=t;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.42,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.01,-1.5,-5 22 50908538 rs151333479 C A 100 PASS AVGPOST=0.9904;AA=C;THETA=0.0004;AN=2184;ERATE=0.0009;VT=SNP;AC=22;SNPSOURCE=LOWCOV;RSQ=0.7204;LDAF=0.0135;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.02,-1.27,-5 0|0:0:-0.2,-0.44,-2.08 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.16,-5 0|0:0:-0.1,-0.67,-5 22 50908549 rs141842891 G A 100 PASS RSQ=0.7706;AA=G;AN=2184;VT=SNP;AC=9;AVGPOST=0.9969;LDAF=0.0056;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.0041;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.93,-5 0|0:0:-0.18,-0.46,-3.01 22 50908593 rs9616781 T C 100 PASS AC=2016;AA=C;LDAF=0.9194;THETA=0.0004;AN=2184;AVGPOST=0.9869;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;RSQ=0.9337;AF=0.92;ASN_AF=1;AMR_AF=0.84;AFR_AF=0.97;EUR_AF=0.88 GT:DS:GL 1|1:2:-5,-1.15,-0.03 1|0:1.15:-2.3,-0.12,-0.62 0|1:1:-1.62,-0.01,-2.02 1|0:1:-5,-0.07,-0.85 0|1:1.1:-4.1,-0.51,-0.16 22 50908660 rs184887590 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;AC=13;LDAF=0.0054;VT=SNP;RSQ=0.8019;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.02,-1.25,-5 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0,-2.01,-5 0|0:0:-0.18,-0.47,-3.08 22 50908866 rs188166428 C G 100 PASS ERATE=0.0004;LDAF=0.0053;AA=C;RSQ=0.7771;AN=2184;VT=SNP;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=11;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0,-2.23,-5 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.15,-5 22 50908867 rs56090676 T C 100 PASS AVGPOST=0.9994;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.9961;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0723;AC=158;AF=0.07;AMR_AF=0.02;AFR_AF=0.31 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.15,-5 22 50908917 rs144218823 T C 100 PASS RSQ=0.7896;AA=T;AN=2184;LDAF=0.0057;VT=SNP;AC=10;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.68,-0.1,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.29,-0.43,-0.92 0|0:0:-0,-2.18,-5 0|0:0:-0.18,-0.47,-3.07 22 50909135 rs180924833 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.8206;LDAF=0.0018;VT=SNP;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AVGPOST=0.9992;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.01,-1.57,-5 22 50909181 rs5771045 C T 100 PASS ERATE=0.0004;RSQ=0.9934;AA=T;AN=2184;VT=SNP;AVGPOST=0.9964;AC=1552;LDAF=0.7105;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.71;ASN_AF=0.83;AMR_AF=0.72;AFR_AF=0.62;EUR_AF=0.67 GT:DS:GL 1|1:2:-5,-3.7,-0 0|0:0:-0,-2.79,-5 0|1:1.05:-2.15,-0.11,-0.66 1|0:1:-5,-0,-3.05 0|1:1:-5,-0,-4.7 22 50909280 rs185431259 C T 100 PASS ERATE=0.0004;AVGPOST=0.9985;AA=C;THETA=0.0004;AN=2184;RSQ=0.5734;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.06,-0.89,-5 22 50909282 rs147764443 G T 100 PASS ERATE=0.0004;RSQ=0.8777;AVGPOST=0.9985;THETA=0.0004;AA=G;AN=2184;AC=8;LDAF=0.0043;VT=SNP;SNPSOURCE=LOWCOV;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.06,-0.89,-5 22 50909332 rs189462809 C A 100 PASS 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rs140865008 G A 100 PASS ERATE=0.0004;LDAF=0.0067;THETA=0.0004;AA=G;AN=2184;RSQ=0.8269;AVGPOST=0.9972;VT=SNP;AC=14;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.13,-0.6,-3.74 0|0:0:-0.08,-0.77,-4.7 0|0:0:-0.07,-0.84,-5 0|0:0:-0.12,-0.6,-3.7 22 50914620 . T TTTTG 640 PASS AVGPOST=0.9888;AN=2184;AC=185;VT=INDEL;THETA=0.0005;RSQ=0.9584;ERATE=0.001;LDAF=0.0869;AF=0.08;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.34;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.2,-20.3 0|0:0:0,0,0 0|0:0:0,-0.3,-5.1 0|0:0:0,-0.3,-5.1 0|0:0:0,0,0 22 50914811 rs189856204 G A 100 PASS ERATE=0.0004;THETA=0.0002;RSQ=0.7124;AA=G;AN=2184;AC=6;VT=SNP;AVGPOST=0.9976;SNPSOURCE=LOWCOV;LDAF=0.0031;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.13,-0.58,-2.97 0|0:0:-0.04,-1.1,-5 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.48,-0.48,-0.48 22 50914879 rs150199021 A G 100 PASS ERATE=0.0004;AN=2184;AC=16;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9984;RSQ=0.9172;LDAF=0.008;AF=0.01;ASN_AF=0.02;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.16,-0.51,-2.82 0|0:0:-0.07,-0.84,-4.7 0|0:0:-0.11,-0.64,-4 0|0:0:-0.2,-0.45,-2.07 22 50914910 rs181776189 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0006;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5687;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0.05:-0.15,-0.55,-3.24 0|0:0:-0.06,-0.87,-5 0|0:0:-0.2,-0.44,-2.12 0|0:0:-0.12,-0.63,-3.92 22 50914922 rs185981540 A C 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;LDAF=0.001;VT=SNP;AA=A;RSQ=0.4466;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.06,-0.89,-5 0|0:0:-0.12,-0.63,-3.32 0|0:0:-0.17,-0.5,-2.47 0|0:0:-0.2,-0.44,-2.12 0|0:0:-0.11,-0.64,-4 22 50915158 rs190087743 G C 100 PASS ERATE=0.0004;AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;RSQ=0.7473;AF=0.0009;ASN_AF=0.0017;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.21,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.04,-1.03,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.03,-1.13,-5 22 50915238 . 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0|0:0:-0.01,-1.71,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.05,-0.94,-5 22 50924920 rs192614895 G T 100 PASS THETA=0.0065;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.7933;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.05,-0.97,-5 22 50924946 rs2232871 T G 100 PASS AVGPOST=0.9936;AA=T;AN=2184;RSQ=0.8713;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;THETA=0.0051;AC=39;LDAF=0.0198;AF=0.02;ASN_AF=0.07 GT:DS:GL 0|0:0:-0,-2.28,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.02,-1.41,-5 0|0:0:-0.03,-1.23,-5 22 50924994 rs2232872 G A 100 PASS AC=12;ERATE=0.0005;AVGPOST=0.9977;AA=G;AN=2184;VT=SNP;THETA=0.0163;LDAF=0.0063;SNPSOURCE=LOWCOV;RSQ=0.851;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.48,-5 0|0:0:-0.21,-0.46,-1.36 0|1:1.05:-2.63,-0.45,-0.19 0|0:0:-0.03,-1.13,-5 0|0:0:-0.02,-1.41,-5 22 50925098 rs2232873 G A 100 PASS 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0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50925392 rs2232875 G A 100 PASS THETA=0.0009;AA=G;AN=2184;AC=37;VT=SNP;RSQ=0.9941;AVGPOST=0.9998;LDAF=0.017;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.06,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50925405 rs2232876 C T 100 PASS AC=746;ERATE=0.0004;AVGPOST=0.9936;RSQ=0.9909;AA=T;AN=2184;VT=SNP;LDAF=0.3416;SNPSOURCE=LOWCOV;THETA=0.0024;AF=0.34;ASN_AF=0.44;AMR_AF=0.39;AFR_AF=0.35;EUR_AF=0.24 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.64,-5 0|1:1:-5,-0,-2.13 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50925432 rs10538866 CCCT C 515 PASS THETA=0.0009;AN=2184;VT=INDEL;AVGPOST=0.958;LDAF=0.209;AC=473;ERATE=0.0007;RSQ=0.9155;AF=0.22;ASN_AF=0.41;AMR_AF=0.27;AFR_AF=0.17;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-0.3,-6.4 0|1:0.85:0,0,0 0|1:0.9:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50925441 . TCCG T 268 PASS AC=417;THETA=0.0004;RSQ=0.8553;AN=2184;VT=INDEL;AVGPOST=0.9363;LDAF=0.1799;ERATE=0.0018;AF=0.19;ASN_AF=0.36;AMR_AF=0.25;AFR_AF=0.15;EUR_AF=0.06 GT:DS:GL 0|0:0:0,-0.6,-10.1 0|0:0:0,0,0 0|1:0.9:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50925467 rs2232877 G T 100 PASS LDAF=0.0016;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.8015;SNPSOURCE=LOWCOV;ERATE=0.0012;THETA=0.0007;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0.12,-0.63,-2.44 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-3.59,-5 22 50925672 rs2232878 T C 100 PASS RSQ=0.9739;AA=C;AN=2184;AVGPOST=0.9979;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2107;LDAF=0.964;AF=0.96;ASN_AF=0.97;AMR_AF=0.96;AFR_AF=0.99;EUR_AF=0.95 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-0.7,-0.1 1|1:2:-5,-1.32,-0.02 1|1:2:-5,-4.22,-0 1|1:2:-5,-5,0 22 50925765 rs184316001 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9998;AC=1;ERATE=0.0003;RSQ=0.8316;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.95,-5 0|0:0:-0,-3.85,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50925771 rs2232879 G A 100 PASS ERATE=0.0004;AC=219;THETA=0.0035;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.1011;RSQ=0.9941;AVGPOST=0.9988;AF=0.1;AMR_AF=0.07;AFR_AF=0.16;EUR_AF=0.15 GT:DS:GL 0|0:0:0,-5,-5 0|1:1:-5,-0,-4 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50925908 rs3747272 C T 100 PASS ERATE=0.0004;RSQ=0.9731;LDAF=0.0052;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;AC=11;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50925914 rs56311845 GC G 296 PASS LDAF=0.0966;AC=212;THETA=0.0004;AN=2184;RSQ=0.9674;VT=INDEL;ERATE=0.0011;AVGPOST=0.9925;AF=0.1;ASN_AF=0.02;AMR_AF=0.1;AFR_AF=0.1;EUR_AF=0.14 GT:DS:GL 0|0:0:0,-1.2,-15.8 0|0:0:0,0,0 0|0:0:0,-0.6,-7.9 1|0:1:0,-0.3,-3.9 0|0:0:0,-0.6,-7.9 22 50925943 rs143775710 G A 100 PASS AVGPOST=1;LDAF=0.0027;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=6;VT=SNP;RSQ=1;THETA=0.0007;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50925997 rs3747273 C A 100 PASS AA=C;AN=2184;RSQ=0.989;VT=SNP;LDAF=0.2324;AC=507;THETA=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9951;AF=0.23;ASN_AF=0.34;AMR_AF=0.23;AFR_AF=0.09;EUR_AF=0.24 GT:DS:GL 0|0:0:0,-5,-5 1|0:1.05:-5,-1.74,-0.01 0|0:0:-0,-3.08,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926045 . C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;LDAF=0.0015;VT=SNP;SNPSOURCE=EXOME;RSQ=0.7117;AVGPOST=0.9987;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926047 rs190030341 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;AC=0;SNPSOURCE=LOWCOV;LDAF=0.0002;ERATE=0.0003;THETA=0.0003;RSQ=0.2372;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.11,-0.66,-2.62 0|0:0:-0.12,-0.62,-3.1 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926070 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.65,-5 0|0:0:-0.02,-1.3,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926082 rs2232880 G A 100 PASS AC=62;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0018;ERATE=0.0003;LDAF=0.0284;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.01,-1.82,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926132 rs78273329 C T 100 PASS AVGPOST=1;LDAF=0.0041;THETA=0.0023;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9957;VT=SNP;AC=9;ERATE=0.0003;AF=0.0041;ASN_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926177 rs141438930 C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926181 rs2232881 T G 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;RSQ=0.9844;VT=SNP;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926192 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926201 . G A 100 PASS RSQ=0.8033;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926308 . C T 100 PASS THETA=0.0009;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926366 . G A 100 PASS LDAF=0.0024;AA=G;AN=2184;AVGPOST=0.9997;THETA=0.0008;RSQ=0.9498;VT=SNP;SNPSOURCE=EXOME;AC=5;ERATE=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926407 rs2232882 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9927;LDAF=0.0124;VT=SNP;AVGPOST=0.9998;AC=27;THETA=0.0007;ERATE=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926439 rs192822614 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0011;AA=A;AVGPOST=0.9998;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.74,-5 0|0:0:-0,-2.81,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926466 . A G 100 PASS AVGPOST=1;AN=2184;RSQ=0.9844;VT=SNP;AA=A;ERATE=0.0008;SNPSOURCE=EXOME;LDAF=0.0014;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0,-4,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926568 rs139015483 C G 100 PASS AA=C;LDAF=0.0066;AN=2184;RSQ=0.943;AVGPOST=0.999;VT=SNP;AC=14;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.13,-0.6,-2.16 0|0:0:-0.01,-1.93,-5 0|0:0:0,-5,-5 22 50926617 rs142380343 C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.7056;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=3;ERATE=0.0007;LDAF=0.0017;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 22 50926657 rs150083164 C T 100 PASS LDAF=0.0036;THETA=0.0015;AA=C;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=8;VT=SNP;RSQ=0.9332;ERATE=0.0006;AF=0.0037;ASN_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.8,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50926679 . C A 100 PASS LDAF=0.0004;AA=C;AN=2184;THETA=0.0005;RSQ=0.8551;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926731 . A G 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926765 . G T 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926768 rs2232883 C T 100 PASS THETA=0.0009;RSQ=0.9937;AA=C;AC=212;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0973;ERATE=0.0003;AVGPOST=0.9984;AF=0.1;ASN_AF=0.03;AMR_AF=0.1;AFR_AF=0.1;EUR_AF=0.15 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|0:0:0,-5,-5 22 50926791 . G C 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.56,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926800 . G A 100 PASS LDAF=0.0004;AA=G;AN=2184;RSQ=0.8551;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.46,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50926877 rs184867030 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;THETA=0.0005;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.6079;AVGPOST=0.9987;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.08,-0.78,-3.28 0|0:0:-0.15,-0.55,-1.92 0|0:0:-0.06,-0.9,-5 0|0:0:-0.05,-0.95,-5 22 50926894 rs74714772 C T 100 PASS AA=C;AN=2184;AC=548;ERATE=0.0009;VT=SNP;AVGPOST=0.9748;RSQ=0.9519;SNPSOURCE=LOWCOV;LDAF=0.2487;THETA=0.0016;AF=0.25;ASN_AF=0.41;AMR_AF=0.27;AFR_AF=0.29;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.03,-1.12,-5 0|0:0:-0.08,-0.78,-3.27 0|1:0.9:-0.22,-0.46,-1.26 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.93,-5 22 50926895 rs57343285 G C 100 PASS LDAF=0.1185;AA=C;AN=2184;RSQ=0.5975;THETA=0.0005;VT=SNP;ERATE=0.025;AVGPOST=0.9;SNPSOURCE=LOWCOV;AC=195;AF=0.09;ASN_AF=0.09;AMR_AF=0.11;AFR_AF=0.1;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0.05:-0.08,-0.79,-3.36 0|0:0.1:-0.22,-0.46,-1.26 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.05,-0.95,-5 22 50926922 rs13056168 C T 100 PASS AA=C;AN=2184;RSQ=0.8206;AVGPOST=0.8906;VT=SNP;LDAF=0.3543;SNPSOURCE=LOWCOV;AC=761;THETA=0.001;ERATE=0.0096;AF=0.35;ASN_AF=0.17;AMR_AF=0.35;AFR_AF=0.39;EUR_AF=0.46 GT:DS:GL 1|1:1.95:-5,-0.67,-0.11 0|0:0.3:-0.22,-0.46,-1.31 1|0:1.05:-0.48,-0.48,-0.48 0|1:0.95:-0.48,-0.48,-0.48 1|1:1.9:-4.22,-0.51,-0.16 22 50926984 rs113708932 C T 100 PASS AC=187;AVGPOST=0.9664;RSQ=0.8505;AA=C;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;LDAF=0.0865;AF=0.09;ASN_AF=0.03;AMR_AF=0.1;AFR_AF=0.08;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.12,-0.63,-4 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 1|0:0.8:-0.48,-0.48,-0.48 0|0:0.05:-0.11,-0.64,-4.7 22 50927104 rs149263115 T C 100 PASS AC=140;AVGPOST=0.9595;AA=T;AN=2184;THETA=0.0008;VT=SNP;ERATE=0.0016;RSQ=0.7675;SNPSOURCE=LOWCOV;LDAF=0.0689;AF=0.06;ASN_AF=0.02;AMR_AF=0.07;AFR_AF=0.04;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.2,-0.45,-2.12 1|0:0.9:-0.1,-0.67,-4.22 0|0:0:-0.15,-0.53,-4 22 50927115 rs59051390 A C 100 PASS THETA=0.0093;AN=2184;AC=678;LDAF=0.3377;VT=SNP;AVGPOST=0.8633;SNPSOURCE=LOWCOV;AA=a;RSQ=0.7765;ERATE=0.0202;AF=0.31;ASN_AF=0.44;AMR_AF=0.35;AFR_AF=0.32;EUR_AF=0.19 GT:DS:GL 0|0:0.2:-0.48,-0.48,-0.48 0|1:0.65:-0.48,-0.48,-0.48 0|1:0.85:-0.48,-0.48,-0.48 0|0:0.3:-0.18,-0.48,-2.21 0|0:0.2:-0.15,-0.54,-4.1 22 50927135 rs117010926 C T 100 PASS AC=105;ERATE=0.0014;AA=C;THETA=0.0014;AN=2184;VT=SNP;RSQ=0.7588;LDAF=0.0572;SNPSOURCE=LOWCOV;AVGPOST=0.9648;AF=0.05;ASN_AF=0.02;AMR_AF=0.05;AFR_AF=0.02;EUR_AF=0.09 GT:DS:GL 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.23,-0.45,-1.23 0|0:0.05:-0.48,-0.48,-0.48 1|0:0.95:-0.2,-0.44,-1.84 0|0:0:-0.1,-0.67,-5 22 50927138 rs117480191 C A 100 PASS AA=C;AN=2184;LDAF=0.0651;VT=SNP;AVGPOST=0.9594;AC=127;SNPSOURCE=LOWCOV;ERATE=0.0012;THETA=0.0058;RSQ=0.7604;AF=0.06;ASN_AF=0.02;AMR_AF=0.06;AFR_AF=0.06;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.47,-1.4 0|0:0:-0.48,-0.48,-0.48 1|0:0.95:-0.22,-0.43,-1.63 0|0:0:-0.11,-0.65,-4.7 22 50927163 rs144549629 G A 100 PASS LDAF=0.0273;AA=G;AN=2184;AC=55;VT=SNP;RSQ=0.8792;AVGPOST=0.9918;SNPSOURCE=LOWCOV;THETA=0.0073;ERATE=0.0007;AF=0.03;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.07,-0.81,-3.42 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-5 22 50927164 rs111414974 GC G 174 PASS AVGPOST=0.9106;THETA=0.0014;AN=2184;VT=INDEL;ERATE=0.0019;AC=501;LDAF=0.2274;RSQ=0.8084;AF=0.23;ASN_AF=0.31;AMR_AF=0.24;AFR_AF=0.13;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-0.3,-3.9 1|0:0.8:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50927198 rs139622342 T C 100 PASS RSQ=0.8274;THETA=0.0014;AN=2184;ERATE=0.0047;AVGPOST=0.8982;VT=SNP;SNPSOURCE=LOWCOV;AC=642;LDAF=0.2927;AA=t;AF=0.29;ASN_AF=0.42;AMR_AF=0.33;AFR_AF=0.33;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.18,-0.47,-2.42 0|0:0:-0.08,-0.78,-3.3 0|1:0.75:-0.24,-0.45,-1.16 1|0:0.75:-0.2,-0.44,-2.13 0|0:0:-0.19,-0.46,-2.97 22 50927216 rs143618166 C T 100 PASS LDAF=0.2052;ERATE=0.0069;AA=C;AVGPOST=0.9013;AN=2184;VT=SNP;AC=451;THETA=0.0057;RSQ=0.7876;SNPSOURCE=LOWCOV;AF=0.21;ASN_AF=0.35;AMR_AF=0.24;AFR_AF=0.2;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 0|0:0:-0.13,-0.6,-2.3 0|1:0.85:-0.08,-0.78,-3.12 0|0:0:-0.1,-0.69,-4.7 0|0:0.05:-0.18,-0.46,-3.01 22 50927232 rs115848179 C G 100 PASS LDAF=0.0078;AN=2184;VT=SNP;RSQ=0.8326;THETA=0.003;AC=14;AVGPOST=0.9969;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.18,-0.47,-2.81 0|0:0:-0.11,-0.67,-2.69 0|0:0:-0.03,-1.21,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.18,-0.47,-3.04 22 50927235 rs139287332 G A 100 PASS THETA=0.0009;AVGPOST=0.9804;LDAF=0.091;RSQ=0.9167;AN=2184;VT=SNP;AC=200;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.09;ASN_AF=0.03;AMR_AF=0.1;AFR_AF=0.07;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.19,-0.46,-2.68 0|0:0:-0.11,-0.67,-2.67 0|0:0:-0.02,-1.3,-5 1|0:0.95:-0.06,-0.88,-5 0|0:0:-0.18,-0.47,-3.07 22 50927279 rs142281234 C T 100 PASS ERATE=0.0013;AA=C;AN=2184;THETA=0.0077;LDAF=0.1605;VT=SNP;RSQ=0.8379;SNPSOURCE=LOWCOV;AVGPOST=0.9372;AC=346;AF=0.16;ASN_AF=0.22;AMR_AF=0.17;AFR_AF=0.07;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.01,-1.74,-5 0|0:0:-0.05,-0.99,-5 0|0:0.05:-0.18,-0.48,-2.19 0|0:0:-0.07,-0.84,-5 22 50927280 rs151240752 A G 100 PASS AVGPOST=0.9274;LDAF=0.1736;AN=2184;AC=359;VT=SNP;ERATE=0.0018;SNPSOURCE=LOWCOV;AA=a;THETA=0.0007;RSQ=0.8211;AF=0.16;ASN_AF=0.23;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.17 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.02,-1.45,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.07,-0.84,-5 22 50927284 rs112627083 T C 100 PASS AN=2184;VT=SNP;RSQ=0.7973;AVGPOST=0.9152;LDAF=0.1912;AC=385;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0053;AA=t;AF=0.18;ASN_AF=0.25;AMR_AF=0.19;AFR_AF=0.09;EUR_AF=0.18 GT:DS:GL 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.02,-1.28,-5 0|0:0:-0.05,-1,-5 0|0:0.1:-0.18,-0.48,-2.19 0|0:0:-0.07,-0.85,-5 22 50927308 rs149999633 G T 100 PASS AC=131;ERATE=0.0292;AA=G;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.8877;LDAF=0.0997;RSQ=0.4776;AF=0.06;ASN_AF=0.07;AMR_AF=0.04;AFR_AF=0.07;EUR_AF=0.06 GT:DS:GL 0|0:0.05:-0.06,-0.87,-5 0|1:0.65:-0.09,-0.74,-3.08 0|0:0.4:-0.03,-1.17,-5 0|0:0:-0.19,-0.46,-2.34 0|0:0.1:-0.08,-0.79,-5 22 50927325 rs60045776 C T 100 PASS THETA=0.0023;AA=C;AN=2184;ERATE=0.0054;LDAF=0.0499;VT=SNP;AC=76;RSQ=0.6235;SNPSOURCE=LOWCOV;AVGPOST=0.954;AF=0.03;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.06,-0.86,-5 0|0:0:-0.05,-0.94,-4.1 0|0:0:-0.01,-1.64,-5 1|0:0.95:-0.19,-0.46,-2.42 0|0:0:-0.12,-0.62,-3.85 22 50927338 rs185433282 A T 100 PASS THETA=0.0004;AN=2184;VT=SNP;AC=24;ERATE=0.0055;SNPSOURCE=LOWCOV;RSQ=0.4478;AA=a;LDAF=0.0213;AVGPOST=0.9701;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.38,-5 0|0:0:-0.05,-1.01,-4.4 0|0:0:-0,-2.36,-5 0|0:0:-0.21,-0.43,-1.96 0|0:0:-0.12,-0.62,-3.85 22 50927347 rs189462689 T C 100 PASS THETA=0.0061;AA=T;AN=2184;VT=SNP;AC=54;ERATE=0.0103;SNPSOURCE=LOWCOV;RSQ=0.4601;AVGPOST=0.9417;LDAF=0.0445;AF=0.02;ASN_AF=0.02;AMR_AF=0.05;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0.05:-0.1,-0.7,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.86,-5 0|0:0.1:-0.19,-0.46,-2.4 0|0:0.05:-0.12,-0.62,-3.85 22 50927364 rs182060071 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9967;VT=SNP;ERATE=0.0008;AC=5;LDAF=0.0039;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.6502;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.94,-5 0|0:0:-0.06,-0.87,-3.74 0|0:0:-0.07,-0.82,-3.34 0|0:0:-0.17,-0.5,-2.82 0|0:0:-0.07,-0.85,-5 22 50927405 rs186797086 T C 100 PASS LDAF=0.0227;AN=2184;VT=SNP;RSQ=0.774;AVGPOST=0.9859;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0012;AA=t;AC=39;AF=0.02;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.42,-0.21,-5 0|0:0:-0,-2.46,-5 0|0:0:-0.01,-1.88,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0.06,-0.88,-5 22 50927406 rs191582380 G A 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AA=A;AC=32;RSQ=0.7946;LDAF=0.0183;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9891;AF=0.01;ASN_AF=0.0017;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.01,-1.89,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.06,-0.89,-5 22 50927415 rs145096476 C T 100 PASS AN=2184;AC=84;THETA=0.0041;VT=SNP;AA=c;SNPSOURCE=LOWCOV;LDAF=0.0401;ERATE=0.0007;AVGPOST=0.9885;RSQ=0.8911;AF=0.04;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.02;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.04,-1.08,-5 0|0:0:-0,-2.68,-5 0|0:0:-0.49,-0.17,-5 1|0:1:-3.55,-0,-5 0|0:0:-0.01,-1.69,-5 22 50927442 rs62239484 C A 100 PASS AVGPOST=0.9945;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9775;AA=c;LDAF=0.0915;AC=201;THETA=0.0016;ERATE=0.0003;AF=0.09;AMR_AF=0.07;AFR_AF=0.16;EUR_AF=0.13 GT:DS:GL 0|0:0:-0,-2.22,-5 0|1:1:-5,-0.06,-0.88 0|0:0:-0.03,-1.12,-4.7 0|0:0:-0,-3.85,-5 0|0:0:-0,-3.92,-5 22 50927478 rs146378961 G A 100 PASS AA=g;AN=2184;AVGPOST=0.9818;RSQ=0.8585;VT=SNP;AC=110;ERATE=0.0312;SNPSOURCE=LOWCOV;THETA=0.0036;LDAF=0.0548;AF=0.05;ASN_AF=0.04;AMR_AF=0.03;AFR_AF=0.07;EUR_AF=0.05 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.06,-0.92,-5 0|0:0.05:-0.12,-0.61,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50927484 . G A 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.49,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50927545 . A T 100 PASS AVGPOST=1;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;THETA=0.0013;AA=a;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50927563 . A G 100 PASS AVGPOST=1;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0019;RSQ=1;AC=1;AA=a;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50927618 . C T 100 PASS AVGPOST=1;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=1;THETA=0.001;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50927619 . G A 100 PASS AVGPOST=1;LDAF=0.0004;AA=g;AN=2184;RSQ=0.95;VT=SNP;THETA=0.0046;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50927689 . G A 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;THETA=0.0027;LDAF=0;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50927693 . C T 100 PASS AVGPOST=1;AN=2184;VT=SNP;THETA=0.0033;AA=c;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.92,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 22 50927779 . G A 100 PASS ERATE=0.0004;THETA=0.0032;AC=28;AN=2184;LDAF=0.0148;RSQ=0.8551;VT=SNP;SNPSOURCE=EXOME;AA=a;AVGPOST=0.9941;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.11,-0.66,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.22,-0.46,-1.26 0|0:0:-0.06,-0.9,-5 0|0:0:-0.1,-0.67,-5 22 50927870 rs149960733 C T 100 PASS THETA=0.0047;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.001;VT=SNP;AA=c;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-3.13,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.62,-5 22 50927916 . C T 100 PASS RSQ=0.7561;AN=2184;VT=SNP;AA=c;LDAF=0.0007;SNPSOURCE=EXOME;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.44,-5 0|0:0:-0.07,-0.82,-3.47 0|0:0:-0.08,-0.77,-3.11 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.97,-5 22 50927937 . G A 100 PASS AA=g;THETA=0.0022;AN=2184;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.0499;AF=0 GT:DS:GL 0|0:0:-0,-2.89,-5 0|0:0:-0,-2.8,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-2.42,-5 22 50927956 rs41280565 C T 100 PASS AC=12;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0041;VT=SNP;AA=c;ERATE=0.0003;RSQ=0.9921;AVGPOST=0.9999;LDAF=0.0055;AF=0.01;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.71,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.1,-5 22 50927976 . C T 100 PASS LDAF=0.0004;AN=2184;THETA=0.0031;RSQ=0.8551;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.79,-5 0|0:0:-0,-3.74,-5 0|0:0:-0.36,-0.25,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 22 50927990 . C T 100 PASS AN=2184;VT=SNP;LDAF=0;AA=c;THETA=0.0006;SNPSOURCE=EXOME;AC=0;RSQ=0.0999;ERATE=0.0003;AVGPOST=0.9999;AF=0 GT:DS:GL 0|0:0:-0,-3,-5 0|0:0:-0,-2.64,-5 0|0:0:-0,-2.14,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50928005 rs2232884 G A 100 PASS ERATE=0.0014;AC=126;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0016;RSQ=0.9634;AVGPOST=0.995;LDAF=0.0593;AF=0.06;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.14;EUR_AF=0.05 GT:DS:GL 0|0:0:-0,-3.34,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0,-1.97,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50928010 rs143037340 G A 100 PASS AC=12;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9692;ERATE=0.0003;LDAF=0.0055;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.33,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50928012 rs41280567 G A 100 PASS AC=17;THETA=0.0009;ERATE=0.0004;LDAF=0.0092;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.9029;AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0,-2.21,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50928026 rs2232885 G A 100 PASS THETA=0.0009;RSQ=0.9707;LDAF=0.2263;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.0017;AVGPOST=0.9862;AC=491;AF=0.22;ASN_AF=0.31;AMR_AF=0.22;AFR_AF=0.14;EUR_AF=0.22 GT:DS:GL 0|0:0:0,-5,-5 1|0:1:-5,-0.01,-1.8 0|0:0:-0.02,-1.39,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50928082 . C T 100 PASS THETA=0.0009;ERATE=0.0005;LDAF=0.0027;AA=C;AN=2184;VT=SNP;RSQ=0.8517;AVGPOST=0.9991;SNPSOURCE=EXOME;AC=5;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0.12,-0.61,-2.37 0|0:0:-0.19,-0.45,-2.17 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50928083 . G A 100 PASS AA=G;AN=2184;VT=SNP;LDAF=0.0023;SNPSOURCE=EXOME;THETA=0.0025;AC=4;RSQ=0.7449;ERATE=0.0003;AVGPOST=0.9982;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.15,-5 0|0:0:-0.25,-0.44,-1.13 0|0:0:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50928179 . A G 100 PASS AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;THETA=0.0043;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-3.28,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50928217 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.06,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50928311 rs190239688 G A 100 PASS RSQ=0.8687;LDAF=0.0016;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0027;ERATE=0.0011;AVGPOST=0.9995;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0,-2.51,-5 0|0:0:-0,-2.14,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 22 50928312 . G A 100 PASS THETA=0.0061;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=EXOME;RSQ=0.8258;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.41,-5 0|0:0:-0,-2.73,-5 0|0:0:-0,-1.96,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.92,-5 22 50928331 rs2232887 G A 100 PASS AVGPOST=0.9804;THETA=0.0054;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.0026;LDAF=0.2223;RSQ=0.9625;AC=476;AF=0.22;ASN_AF=0.4;AMR_AF=0.24;AFR_AF=0.23;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.02,-1.33,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.05,-0.98,-4.7 0|0:0:-0,-4.1,-5 0|0:0:-0,-3.7,-5 22 50928340 rs1055271 G C 100 PASS AA=G;AN=2184;AC=618;AVGPOST=0.974;VT=SNP;ERATE=0.0051;LDAF=0.2866;RSQ=0.9527;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.28;ASN_AF=0.33;AMR_AF=0.31;AFR_AF=0.11;EUR_AF=0.35 GT:DS:GL 1|0:1:-5,0,-5 1|0:1:-1.69,-0.01,-2.29 0|0:0:-0.08,-0.79,-4 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 22 50928372 rs2232888 C G 100 PASS AC=7;LDAF=0.0036;ERATE=0.0013;AA=C;AN=2184;VT=SNP;THETA=0.0095;SNPSOURCE=LOWCOV;RSQ=0.9009;AVGPOST=0.9992;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.14,-0.59,-2.1 0|0:0:-0,-2.84,-5 0|0:0:0,-5,-5 22 50928398 rs182125529 A T 100 PASS LDAF=0.0004;AN=2184;VT=SNP;AA=A;AC=0;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;RSQ=0.5084;AVGPOST=0.9995;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.03,-1.16,-5 0|0:0:0,-5,-5 22 50928411 rs140205443 G C 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.8806;THETA=0.0103;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-4,-5 22 50928415 rs150334058 C T 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.8138;ERATE=0.0003;THETA=0.0098;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-1.99,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0,-2.46,-5 0|0:0:-0,-3.92,-5 22 50928419 rs2232889 A G 100 PASS LDAF=0.022;AN=2184;AC=46;AVGPOST=0.9972;VT=SNP;THETA=0.008;RSQ=0.9511;AA=A;ERATE=0.0018;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-3.62,-5 22 50928428 rs186814945 G A 100 PASS THETA=0.0102;AA=G;AN=2184;RSQ=0.46;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.11,-5 0|0:0:-0,-1.97,-5 0|0:0:-0.01,-1.66,-5 0|0:0:-0,-2.6,-5 0|0:0:-0.05,-0.98,-5 22 50928509 rs138007121 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0059;LDAF=0.0006;RSQ=0.7318;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.66,-5 22 50928513 rs192342475 C T 100 PASS AA=C;AN=2184;RSQ=0.7534;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0098;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.23,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.08,-0.8,-3.21 0|0:0:-0.02,-1.27,-5 0|0:0:-0,-1.94,-5 22 50928517 rs183904121 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;THETA=0.0037;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.3921;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.06,-0.87,-4.7 0|0:0:-0.04,-1.02,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.02,-1.4,-5 22 50928555 rs143666145 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0069;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0.18,-0.47,-2.32 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.06,-0.89,-5 22 50928619 rs117099296 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;THETA=0.0018;RSQ=0.777;SNPSOURCE=LOWCOV;LDAF=0.0111;AVGPOST=0.9941;AC=19;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.18,-0.47,-3.06 22 50928641 rs188553057 C T 100 PASS RSQ=0.7107;AA=C;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;THETA=0.002;ERATE=0.0003;AC=3;LDAF=0.0017;AF=0.0014;ASN_AF=0.0017;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.63,-5 0|0:0:-0.08,-0.78,-4.7 0|0:0:-0.14,-0.58,-2.1 0|0:0:-0.2,-0.45,-1.92 0|0:0:-0.18,-0.46,-3 22 50928737 rs192934949 T C 100 PASS AC=7;LDAF=0.0035;AA=T;AN=2184;VT=SNP;THETA=0.0067;RSQ=0.91;AVGPOST=0.9993;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.02,-1.34,-5 0|0:0:-0.16,-0.51,-2.61 0|0:0:-0.04,-1.09,-5 22 50928758 rs147183980 A G 100 PASS AC=12;ERATE=0.0004;AVGPOST=0.9994;AN=2184;VT=SNP;AA=A;LDAF=0.0056;RSQ=0.9519;SNPSOURCE=LOWCOV;THETA=0.0052;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.04,-1.08,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.03,-1.19,-5 0|0:0.05:-0.19,-0.45,-2.15 22 50928777 rs185438473 C T 100 PASS ERATE=0.0005;RSQ=0.5348;AA=C;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0069;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.02,-1.45,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.05,-0.93,-5 0|0:0.05:-0.2,-0.44,-1.97 22 50928876 rs56235139 G A 100 PASS AC=48;AA=G;AN=2184;VT=SNP;ERATE=0.001;AVGPOST=0.9872;THETA=0.0025;SNPSOURCE=LOWCOV;LDAF=0.0236;RSQ=0.7938;AF=0.02;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.11,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50928892 rs188600738 C G 100 PASS ERATE=0.0005;AA=C;AN=2184;AC=8;VT=SNP;RSQ=0.6934;AVGPOST=0.9969;THETA=0.01;LDAF=0.0044;SNPSOURCE=LOWCOV;AF=0.0037;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50928978 . CAG C 154 PASS ERATE=0.0005;AN=2184;AC=8;VT=INDEL;RSQ=0.7447;THETA=0.0055;AVGPOST=0.9971;LDAF=0.0049;AF=0.0037;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-1.8,-35.7 0|0:0:0,-0.3,-6.1 0|0:0:0,-1.8,-36.6 0|0:0.05:0,-0.3,-5.6 0|0:0.05:0,0,0 22 50928994 rs8140686 T C 100 PASS AC=395;LDAF=0.1834;AA=C;AN=2184;VT=SNP;RSQ=0.9465;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AVGPOST=0.9777;AF=0.18;ASN_AF=0.03;AMR_AF=0.11;AFR_AF=0.28;EUR_AF=0.26 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|1:1:-5,-0.01,-1.7 0|0:0:-0,-2.34,-5 1|0:1:-1.93,-0.02,-1.48 0|0:0:-0.13,-0.59,-3.52 22 50929031 rs191951538 G A 100 PASS AVGPOST=0.9994;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0012;AC=2;RSQ=0.7568;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.43,-0.2,-3.55 0|0:0:-0.07,-0.85,-5 22 50929070 rs183755373 T C 100 PASS THETA=0.0021;LDAF=0.0027;AA=T;AN=2184;RSQ=0.5982;AVGPOST=0.9975;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0.05:-0.04,-1.06,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.04,-1.09,-5 22 50929164 rs73891253 G A 100 PASS THETA=0.0009;ERATE=0.0004;LDAF=0.0116;AA=G;AN=2184;VT=SNP;AVGPOST=0.9976;AC=24;SNPSOURCE=LOWCOV;RSQ=0.9163;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0.2:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.06,-4.7 0|0:0:-0.24,-0.45,-1.18 0|0:0:-0.06,-0.88,-5 0|0:0:-0.06,-0.9,-5 22 50929207 rs149311756 C T 100 PASS AC=12;RSQ=0.9543;AA=C;AN=2184;LDAF=0.0057;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.72,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.88,-5 0|0:0:-0.06,-0.88,-5 22 50929214 rs188315141 C A 100 PASS AC=7;THETA=0.0023;AA=C;AN=2184;RSQ=0.651;VT=SNP;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0051;AF=0.0032;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.9,-5 0|0:0:-0.03,-1.12,-5 22 50929316 rs144685323 C T 100 PASS LDAF=0.0009;AA=C;AN=2184;RSQ=0.6468;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0058;ERATE=0.0003;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.81,-5 0|0:0:-0,-3.05,-5 0|0:0:-0.09,-0.71,-5 0|0:0:-0.01,-1.86,-5 22 50929331 rs73891255 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;THETA=0.0075;VT=SNP;AC=44;RSQ=0.9815;SNPSOURCE=LOWCOV;AVGPOST=0.9992;LDAF=0.0203;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.7,-5 0|0:0:-0,-2.87,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.05,-0.96,-5 0|0:0:-0.01,-1.9,-5 22 50929354 rs181766794 A G 100 PASS AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;THETA=0.0017;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.08,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0,-2.33,-5 22 50929490 rs187296366 G C 100 PASS AA=G;AN=2184;RSQ=0.7452;AVGPOST=0.9997;THETA=0.0041;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-2.22,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.53,-5 22 50929572 rs190095215 C G 100 PASS ERATE=0.0004;RSQ=0.6789;AA=C;THETA=0.0014;AVGPOST=0.9994;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.02,-1.3,-5 0|0:0:-0.06,-0.86,-5 22 50929581 rs4824157 T C 100 PASS AA=C;LDAF=0.211;RSQ=0.9609;AN=2184;THETA=0.0075;VT=SNP;AC=451;AVGPOST=0.9809;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.21;ASN_AF=0.03;AMR_AF=0.13;AFR_AF=0.37;EUR_AF=0.27 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|1:1:-1.91,-0.01,-2.29 0|0:0.15:-0.13,-0.61,-2.22 1|0:1:-3.06,-0,-4.7 0|0:0:-0.02,-1.34,-5 22 50929584 rs6010110 G A 100 PASS ERATE=0.0005;RSQ=0.5023;AA=g;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0011;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.13,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.13,-0.6,-2.2 0|0:0:-0.03,-1.13,-5 0|0:0:-0.02,-1.31,-5 22 50929866 . TG T 60 PASS LDAF=0.0206;AN=2184;RSQ=0.845;VT=INDEL;THETA=0.0041;AVGPOST=0.9917;AC=44;ERATE=0.0003;AF=0.02;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:0,-1.5,-20.5 0|0:0:0,-0.6,-7 0|0:0:0,0,0 0|0:0:0,-0.3,-4.1 0|0:0:0,0,0 22 50929867 rs6010111 G T 100 PASS AC=47;RSQ=0.847;AA=G;AN=2184;ERATE=0.0009;VT=SNP;THETA=0.0056;SNPSOURCE=LOWCOV;AVGPOST=0.9905;LDAF=0.0244;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-1.97,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.11,-0.67,-5 22 50929883 . CA C 98 PASS LDAF=0.0078;AN=2184;AC=13;THETA=0.009;VT=INDEL;RSQ=0.7037;AVGPOST=0.9941;ERATE=0.0007;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-1.2,-16.8 0|0:0:0,-0.6,-9 0|0:0:0,-0.9,-13.5 0|0:0:0,-0.3,-4.5 0|0:0:0,0,0 22 50929926 rs190089543 C T 100 PASS THETA=0.0009;ERATE=0.0004;AA=C;AN=2184;RSQ=0.4918;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9929;LDAF=0.005;AF=0.0023;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.11,-0.64,-4.1 0|0:0.15:-0.18,-0.48,-2.17 0|0:0:-0.19,-0.46,-2.98 22 50930000 rs148519327 C T 100 PASS ERATE=0.0004;AVGPOST=0.9957;LDAF=0.0088;AA=C;AN=2184;THETA=0.0038;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8208;AC=19;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.06,-0.9,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.43,-1.9 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.48,-0.48,-0.48 22 50930050 rs142795160 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0086;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;RSQ=0.48;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.07 0|0:0:-0.18,-0.48,-2.19 0|0:0:-0.23,-0.41,-1.61 22 50930051 rs182672089 T G 100 PASS ERATE=0.0004;THETA=0.0026;RSQ=0.5773;AA=T;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.1 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.15,-0.54,-3.11 22 50930160 rs146100384 G A 100 PASS AA=G;AN=2184;RSQ=0.5183;AVGPOST=0.9972;VT=SNP;THETA=0.0006;ERATE=0.0008;LDAF=0.0028;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0.48,-0.48,-0.48 22 50930396 rs116855737 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9934;LDAF=0.0079;VT=SNP;THETA=0.0033;RSQ=0.671;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0006;AF=0.01;ASN_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.05,-0.92,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.18,-0.47,-2.14 0|0:0:-0.19,-0.45,-2.12 22 50930515 rs184896502 C T 100 PASS AC=12;THETA=0.005;AVGPOST=0.9921;RSQ=0.6104;AA=C;AN=2184;ERATE=0.0009;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0081;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.04 0|0:0:-0.48,-0.48,-0.48 22 50930611 rs189802900 C T 100 PASS THETA=0.0015;AA=C;AN=2184;VT=SNP;AVGPOST=0.9964;RSQ=0.386;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.67,-4 0|0:0:-0.19,-0.45,-2.11 22 50930698 rs183914903 C T 100 PASS ERATE=0.0005;AA=C;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.6135;AVGPOST=0.9973;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.22,-0.42,-1.71 0|0:0:-0.13,-0.59,-3.27 0|0:0:-0.12,-0.61,-3.7 22 50930717 rs6010112 G A 100 PASS LDAF=0.0336;AA=G;AN=2184;AVGPOST=0.9917;VT=SNP;THETA=0.0059;RSQ=0.913;SNPSOURCE=LOWCOV;AC=69;ERATE=0.0006;AF=0.03;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.12 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0.08,-0.75,-5 0|0:0:-0.08,-0.78,-5 0|0:0:-0.19,-0.47,-2.08 0|0:0:-0.07,-0.82,-5 22 50930779 rs188713860 T G 100 PASS AA=T;AN=2184;AVGPOST=0.9981;THETA=0.0075;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.5202;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.58,-4.22 22 50930802 rs5771056 A G 100 PASS AC=1949;THETA=0.0015;LDAF=0.8741;ERATE=0.0128;RSQ=0.7908;AA=G;AN=2184;VT=SNP;AVGPOST=0.9374;SNPSOURCE=LOWCOV;AF=0.89;ASN_AF=0.96;AMR_AF=0.91;AFR_AF=0.86;EUR_AF=0.85 GT:DS:GL 1|1:2:-5,-1.17,-0.03 1|1:1.9:-3.02,-0.48,-0.17 1|0:1.35:-2.33,-0.12,-0.63 0|1:1:-2.84,-0.46,-0.19 1|1:1.95:-4.7,-0.61,-0.12 22 50931068 rs146838104 G A 100 PASS THETA=0.0048;AA=G;AN=2184;AC=8;VT=SNP;AVGPOST=0.9989;LDAF=0.0038;SNPSOURCE=LOWCOV;RSQ=0.9118;ERATE=0.0003;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0.27,-0.43,-1.03 0|0:0:-0.15,-0.53,-2.66 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.16 22 50931085 rs140603885 G T 100 PASS RSQ=0.4617;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;LDAF=0.0017;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.08,-0.77,-4.1 0|0:0:-0.17,-0.49,-2.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.15 22 50931251 rs192426151 C G 100 PASS THETA=0.0023;LDAF=0.0021;AA=C;AN=2184;ERATE=0.0009;AVGPOST=0.9967;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.2745;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.04,-1.09,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-1.97 0|0:0:-0.48,-0.48,-0.48 22 50931282 rs10854879 C T 100 PASS AA=C;RSQ=0.767;AC=1770;AN=2184;VT=SNP;THETA=0.0055;AVGPOST=0.8922;SNPSOURCE=LOWCOV;ERATE=0.0096;LDAF=0.7758;AF=0.81;ASN_AF=0.95;AMR_AF=0.86;AFR_AF=0.75;EUR_AF=0.72 GT:DS:GL 1|1:1.65:-5,-0.77,-0.08 1|0:1:-0.48,-0.48,-0.48 1|1:1.8:-0.48,-0.48,-0.48 0|1:1:-1.47,-0.04,-1.34 1|1:1.75:-0.48,-0.48,-0.48 22 50931287 rs183429512 G A 100 PASS AVGPOST=0.9723;AA=G;AN=2184;RSQ=0.3557;LDAF=0.0186;VT=SNP;AC=14;ERATE=0.0039;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.01;AFR_AF=0.02;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.09,-0.73,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.25:-0.11,-0.65,-3.8 0|0:0.4:-0.48,-0.48,-0.48 22 50931383 rs9628192 G A 100 PASS AC=1884;LDAF=0.814;AN=2184;AVGPOST=0.844;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0125;RSQ=0.5954;THETA=0.0024;AF=0.86;ASN_AF=0.92;AMR_AF=0.89;AFR_AF=0.88;EUR_AF=0.79 GT:DS:GL 1|0:1.4:-1.94,-0.4,-0.23 1|1:1.65:-0.48,-0.48,-0.48 1|1:1.65:-0.48,-0.48,-0.48 0|0:0.45:-0.48,-0.48,-0.48 0|1:0.85:-0.23,-0.42,-1.66 22 50931486 rs4824128 T C 100 PASS 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AN=2184;AVGPOST=0.9699;LDAF=0.028;VT=SNP;THETA=0.0174;ERATE=0.0049;SNPSOURCE=LOWCOV;AA=N;AC=39;RSQ=0.5886;AF=0.02;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.14,-0.57,-3.44 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.13,-0.58,-3.14 0|0:0.05:-0.2,-0.44,-1.98 22 50934942 rs144030725 C T 100 PASS AN=2184;LDAF=0.0299;VT=SNP;AA=c;THETA=0.0149;SNPSOURCE=LOWCOV;AVGPOST=0.9881;AC=60;RSQ=0.8336;ERATE=0.0007;AF=0.03;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.05 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.48,-0.48,-0.48 0|1:0.7:-0.23,-0.41,-1.6 1|0:1:-5,-0.85,-0.07 0|1:1:-0.24,-0.41,-1.48 22 50934943 rs185801082 G A 100 PASS AA=g;AN=2184;THETA=0.0191;AVGPOST=0.9972;VT=SNP;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0006;LDAF=0.0031;RSQ=0.5994;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.92,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.41,-1.5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.24,-0.41,-1.45 22 50935082 rs134970 T C 100 PASS AA=T;AN=2184;RSQ=0.8997;AC=1248;THETA=0.0105;VT=SNP;AVGPOST=0.9324;LDAF=0.5667;SNPSOURCE=LOWCOV;ERATE=0.0029;AF=0.57;ASN_AF=0.73;AMR_AF=0.57;AFR_AF=0.34;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-0.9,-0.06 1|0:1.05:-1.97,-0.01,-2.57 1|0:1:-3.06,-0,-4.1 0|0:0:-0.48,-0.48,-0.48 1|0:1:-5,-0.03,-1.11 22 50935125 rs134971 C T 100 PASS AA=C;ERATE=0.0023;AN=2184;LDAF=0.9012;AVGPOST=0.9656;VT=SNP;THETA=0.003;RSQ=0.8517;AC=1987;SNPSOURCE=LOWCOV;AF=0.91;ASN_AF=1;AMR_AF=0.9;AFR_AF=0.83;EUR_AF=0.91 GT:DS:GL 1|1:2:-5,-0.66,-0.11 1|1:1.9:-0.48,-0.48,-0.48 1|1:2:-0.48,-0.48,-0.48 1|0:1:-0.19,-0.46,-2.06 1|1:2:-3.25,-0.46,-0.19 22 50935143 rs191049620 G A 100 PASS AA=G;AN=2184;VT=SNP;ERATE=0.0017;LDAF=0.0034;RSQ=0.4651;THETA=0.0049;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.996;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.28,-0.44,-0.96 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.19,-0.45,-2.83 22 50935155 rs9616857 C G 100 PASS THETA=0.0021;AA=C;AN=2184;AVGPOST=0.9878;VT=SNP;AC=263;RSQ=0.9541;SNPSOURCE=LOWCOV;LDAF=0.1223;ERATE=0.0006;AF=0.12;ASN_AF=0.03;AMR_AF=0.13;AFR_AF=0.09;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0.05:-0.19,-0.46,-2.24 0|1:1:-0.15,-0.54,-3.02 0|0:0.15:-0.18,-0.48,-2.19 0|0:0:-0.19,-0.45,-2.84 22 50935270 rs181981746 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;LDAF=0.0029;RSQ=0.6863;AC=5;THETA=0.0066;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.02,-1.46,-5 0|0:0:-0.2,-0.44,-2 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.12,-0.63,-3.92 22 50935383 rs151179020 C A 100 PASS THETA=0.0048;ERATE=0.0004;AA=C;AN=2184;LDAF=0.0018;VT=SNP;RSQ=0.796;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9992;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.19,-0.46,-2.42 0|0:0:-0.12,-0.63,-4 22 50935385 rs9616858 T C 100 PASS ERATE=0.0004;RSQ=0.9807;AVGPOST=0.9943;AA=T;AN=2184;THETA=0.0077;VT=SNP;AC=284;LDAF=0.1318;SNPSOURCE=LOWCOV;AF=0.13;ASN_AF=0.03;AMR_AF=0.13;AFR_AF=0.14;EUR_AF=0.2 GT:DS:GL 0|0:0:-0,-3.74,-5 0|0:0:-0.04,-1.06,-5 0|1:1:-1.41,-0.02,-4.7 0|0:0.15:-0.19,-0.46,-2.41 0|0:0:-0.11,-0.64,-4 22 50935386 rs186478584 G A 100 PASS ERATE=0.0004;RSQ=0.8142;AA=G;AN=2184;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0016;AVGPOST=0.9995;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.8,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.19,-0.46,-2.41 0|0:0:-0.11,-0.64,-4 22 50935458 rs134972 A G 100 PASS RSQ=0.8448;AA=G;AN=2184;ERATE=0.0034;VT=SNP;THETA=0.0027;AVGPOST=0.9601;SNPSOURCE=LOWCOV;AC=1983;LDAF=0.8947;AF=0.91;ASN_AF=1;AMR_AF=0.9;AFR_AF=0.82;EUR_AF=0.91 GT:DS:GL 1|1:2:-5,-1.41,-0.02 1|1:1.95:-4.7,-0.4,-0.22 1|1:1.95:-5,-0.7,-0.1 1|0:1.05:-1.56,-0.38,-0.25 1|1:2:-0.48,-0.48,-0.48 22 50935536 rs134974 G A 100 PASS THETA=0.0009;AVGPOST=0.9517;AA=G;AN=2184;RSQ=0.9322;VT=SNP;AC=1029;SNPSOURCE=LOWCOV;LDAF=0.4651;ERATE=0.0006;AF=0.47;ASN_AF=0.51;AMR_AF=0.51;AFR_AF=0.25;EUR_AF=0.56 GT:DS:GL 0|1:1:-0.89,-0.06,-5 1|1:1.95:-5,-0.38,-0.23 1|0:1:-4.1,-0.05,-0.99 0|0:0:-0.05,-0.96,-5 1|0:1:-5,-0,-2.49 22 50935575 rs111544439 C T 100 PASS RSQ=0.9937;AA=C;AN=2184;LDAF=0.0106;VT=SNP;AC=23;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.93,-5 0|0:0:-0,-2.82,-5 0|0:0:-0.01,-1.61,-5 22 50935626 rs191161817 A G 100 PASS AVGPOST=1;AN=2184;RSQ=0.9844;VT=SNP;THETA=0.0006;AA=A;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-3.19,-5 0|0:0:-0,-2.52,-5 0|0:0:-0.01,-1.86,-5 22 50935731 rs150355269 C A 100 PASS AA=C;AN=2184;AC=6;AVGPOST=0.9996;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;RSQ=0.9392;THETA=0.002;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.81,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0.05:-0.19,-0.46,-2.16 22 50935764 rs144974764 C T 100 PASS THETA=0.0015;RSQ=0.7098;AN=2184;VT=SNP;AA=c;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=3;ERATE=0.0007;LDAF=0.0017;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-2.19,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0,-2.56,-5 22 50935765 rs75385568 G A 100 PASS AA=G;AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;RSQ=0.0747;AC=0;SNPSOURCE=LOWCOV;LDAF=0.0002;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.28,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.03,-1.11,-5 0|0:0:-0,-2.32,-5 22 50935833 . CATA C 278 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9966;LDAF=0.0092;AN=2184;VT=INDEL;RSQ=0.8517;AC=19;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-0.9,-19.5 0|0:0.05:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-12.9 0|0:0.05:0,0,0 22 50935868 rs141121045 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;RSQ=0.9465;LDAF=0.0029;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.67,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0.04,-1.08,-5 22 50935881 rs182946835 C T 100 PASS AA=C;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;RSQ=0.6523;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0,-2.35,-5 0|0:0:-0,-2.09,-5 0|0:0:-0.11,-0.64,-4.1 22 50935883 rs144923710 T A 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.5177;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.002;AVGPOST=0.9987;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2.84,-5 0|0:0:-0,-2.09,-5 0|0:0:-0.08,-0.79,-5 22 50935943 . TA T 45 PASS AN=2184;VT=INDEL;AC=31;THETA=0.0028;RSQ=0.7828;AVGPOST=0.9905;LDAF=0.0161;ERATE=0.0003;AF=0.01;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-1.2,-16.4 0|0:0:0,-0.3,-4.1 0|0:0:0,-1.8,-22.2 0|0:0.05:0,-0.9,-11.3 0|0:0:0,-0.3,-4.1 22 50935944 rs73172230 A T 100 PASS AVGPOST=0.9884;AN=2184;RSQ=0.7997;ERATE=0.0009;LDAF=0.0208;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=36;THETA=0.0013;AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-2.02,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.13,-0.6,-3.66 22 50935947 rs138757196 T A 100 PASS AC=7;LDAF=0.0036;AN=2184;RSQ=0.899;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9992;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.13,-0.6,-3.7 22 50935962 rs186277833 G A 100 PASS LDAF=0.0027;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;AC=3;ERATE=0.0007;RSQ=0.3431;AVGPOST=0.996;AF=0.0014;ASN_AF=0.0035;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.23,-0.41,-1.64 0|0:0:-0.02,-1.42,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0.13,-0.59,-3.55 22 50935998 rs191138845 C T 100 PASS ERATE=0.0004;RSQ=0.8288;LDAF=0.0021;AA=C;AN=2184;VT=SNP;THETA=0.0045;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9992;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.14,-0.55,-3.3 0|0:0:-0.04,-1.01,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-3.92 22 50936004 rs141982785 C T 100 PASS AC=12;ERATE=0.0004;AA=C;LDAF=0.0068;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9961;RSQ=0.7808;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.08,-0.76,-5 0|0:0:-0.21,-0.44,-1.99 0|0:0:-0.03,-1.15,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.63,-3.92 22 50936027 rs143647267 T C 100 PASS ERATE=0.0005;LDAF=0.0095;AA=C;THETA=0.0014;AVGPOST=0.9994;AN=2184;AC=20;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9677;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.04,-1.04,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.64,-4 22 50936035 rs9616859 A C 100 PASS ERATE=0.0004;AC=273;AN=2184;RSQ=0.9814;VT=SNP;AA=A;LDAF=0.1255;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9949;AF=0.12;ASN_AF=0.03;AMR_AF=0.14;AFR_AF=0.11;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.19,-0.45,-2.19 0|1:1:-2.24,-0.02,-1.42 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.15 22 50936098 rs61538457 G A 100 PASS AC=17;ERATE=0.0004;AVGPOST=0.9985;RSQ=0.9164;AA=G;AN=2184;LDAF=0.0079;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.25,-0.4,-1.44 0|0:0:-0.09,-0.74,-4.4 0|0:0:-0.13,-0.59,-3.66 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.15 22 50936228 rs150669561 G A 100 PASS AC=7;AVGPOST=0.9966;AA=G;AN=2184;VT=SNP;THETA=0.0053;ERATE=0.0018;RSQ=0.6733;SNPSOURCE=LOWCOV;LDAF=0.0045;AF=0.0032;ASN_AF=0.01;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.24,-0.41,-1.4 0|0:0:-0.07,-0.82,-5 22 50936272 rs183301030 C T 100 PASS LDAF=0.0013;AA=C;AN=2184;RSQ=0.666;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;AVGPOST=0.9987;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.13,-0.59,-4.1 0|0:0:-0.02,-1.26,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.11,-0.67,-4.22 0|0:0:-0,-2.37,-5 22 50936302 rs139924437 C G 100 PASS ERATE=0.0004;RSQ=0.7196;AA=C;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;THETA=0.0013;AVGPOST=0.9987;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.29,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.89,-5 22 50936319 rs143211317 G T 100 PASS AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;AC=10;THETA=0.0006;SNPSOURCE=LOWCOV;LDAF=0.0048;ERATE=0.0003;RSQ=0.8308;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.03,-1.14,-5 0|0:0:-0.01,-1.62,-5 22 50936324 rs134975 T C 100 PASS AC=1260;AA=C;AN=2184;VT=SNP;LDAF=0.5734;THETA=0.0025;RSQ=0.9776;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9842;AF=0.58;ASN_AF=0.72;AMR_AF=0.59;AFR_AF=0.36;EUR_AF=0.6 GT:DS:GL 1|1:2:-0.48,-0.48,-0.48 1|1:2:-5,-0.99,-0.05 1|0:1:-1.88,-0.03,-1.35 0|0:0:-0.02,-1.4,-5 1|0:1:-5,0,-5 22 50936366 rs147544240 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=20;VT=SNP;AVGPOST=0.9993;LDAF=0.0094;RSQ=0.9671;SNPSOURCE=LOWCOV;THETA=0.002;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.19,-0.47,-2.34 0|0:0:-0.01,-1.73,-5 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.03,-1.15,-5 0|0:0:-0.04,-1.1,-5 22 50936609 . T TA 122 PASS RSQ=0.9537;AC=1181;AN=2184;VT=INDEL;THETA=0.0005;ERATE=0.0011;LDAF=0.5337;AVGPOST=0.9678;AF=0.54;ASN_AF=0.71;AMR_AF=0.54;AFR_AF=0.41;EUR_AF=0.5 GT:DS:GL 1|1:2:-10.7,-1.9,0 1|0:1.05:-3,-0.3,0 1|0:1:0,-0.2,-0.6 0|0:0:0,-0.9,-9.8 0|0:0.5:0,0,0 22 50936613 rs134976 T A 100 PASS AN=2184;VT=SNP;ERATE=0.0026;AA=A;RSQ=0.9557;AVGPOST=0.9691;SNPSOURCE=LOWCOV;LDAF=0.5383;THETA=0.0016;AC=1190;AF=0.54;ASN_AF=0.72;AMR_AF=0.54;AFR_AF=0.42;EUR_AF=0.5 GT:DS:GL 1|1:2:-5,-2.21,-0 1|0:1.05:-3.04,-0.48,-0.17 1|0:1.05:-3.06,-0.49,-0.17 0|0:0:-0.01,-1.75,-5 0|0:0.4:-0.18,-0.47,-3.09 22 50936632 rs140175624 A C 100 PASS THETA=0.0054;AN=2184;VT=SNP;AA=A;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.5883;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.19,-0.45,-2.22 0|0:0:-0.04,-1.06,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.06,-0.87,-5 22 50936738 rs59524211 G A 100 PASS AC=35;AVGPOST=0.9983;AA=G;AN=2184;RSQ=0.9564;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0161;ERATE=0.0003;THETA=0.0003;AF=0.02;ASN_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.11,-0.64,-4.7 22 50936806 rs6009974 C T 100 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9985;AA=C;AN=2184;RSQ=0.9939;AC=191;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0871;AF=0.09;AMR_AF=0.04;AFR_AF=0.36 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.71,-5 0|0:0:-0,-3.15,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.06,-0.89,-5 22 50936876 rs187512803 G A 100 PASS THETA=0.0015;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;LDAF=0.0007;RSQ=0.5894;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.01,-1.68,-5 0|0:0:-0.01,-1.61,-5 22 50936877 rs192748730 G A 100 PASS LDAF=0.0009;AA=G;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.5617;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.02,-1.31,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.6,-5 22 50936880 rs145444571 G C 100 PASS AA=G;AN=2184;RSQ=0.8706;AC=6;VT=SNP;LDAF=0.0026;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.01,-1.9,-5 0|0:0:-0,-3.17,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.01,-1.84,-5 22 50936973 rs182311885 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;RSQ=0.7317;THETA=0.0007;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0,-2.86,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.06,-0.87,-5 22 50937030 rs116527964 C G 100 PASS AA=C;THETA=0.0004;AN=2184;AC=83;VT=SNP;LDAF=0.0383;RSQ=0.9835;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.04;AMR_AF=0.01;AFR_AF=0.16 GT:DS:GL 0|0:0:-0.02,-1.26,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.42,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.48,-0.48,-0.48 22 50937043 rs34589122 A C 100 PASS ERATE=0.0005;RSQ=0.9262;AN=2184;AVGPOST=0.9914;VT=SNP;THETA=0.0006;LDAF=0.044;AA=A;AC=92;SNPSOURCE=LOWCOV;AF=0.04;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|1:1:-5,0,-5 0|0:0:-0,-3.09,-5 0|0:0:-0.01,-1.72,-5 0|0:0.5:-0.2,-0.44,-2 22 50937054 rs187680819 T C 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;THETA=0.0033;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6229;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.19,-0.46,-2.16 22 50937080 rs148429562 G A 100 PASS THETA=0.0021;ERATE=0.0004;AA=G;AN=2184;RSQ=0.7534;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0,-3.12,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.01,-1.56,-5 22 50937111 rs80050195 C T 100 PASS AA=C;AN=2184;AC=20;LDAF=0.0098;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9488;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9987;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0,-1.98,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.01,-1.53,-5 22 50937112 rs142540520 G A 100 PASS AA=C;AN=2184;THETA=0.0008;RSQ=0.9439;VT=SNP;LDAF=0.0019;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.1,-5 0|0:0:-0.01,-1.91,-5 0|0:0.05:-0.11,-0.66,-4.22 0|0:0:-0.01,-1.57,-5 22 50937150 rs150954371 C T 100 PASS AA=C;AN=2184;ERATE=0.0009;THETA=0.0008;VT=SNP;AVGPOST=0.9971;LDAF=0.0023;SNPSOURCE=LOWCOV;RSQ=0.5321;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.04,-1.1,-5 22 50937212 rs192701473 C T 100 PASS RSQ=0.7847;AA=T;AN=2184;LDAF=0.0018;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.0052;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.08,-0.79,-4 0|0:0:-0.02,-1.42,-5 0|0:0:-0.06,-0.87,-5 22 50937236 rs184308047 T G 100 PASS THETA=0.0002;AA=T;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.25,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.1,-0.7,-4.22 0|0:0:-0.02,-1.38,-5 22 50937445 rs8138406 C T 100 PASS THETA=0.0009;AC=1240;AA=C;AVGPOST=0.9943;AN=2184;LDAF=0.5676;VT=SNP;RSQ=0.9915;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.57;ASN_AF=0.73;AMR_AF=0.58;AFR_AF=0.32;EUR_AF=0.6 GT:DS:GL 1|1:2:-3.09,-0.47,-0.18 1|1:2:-5,-0.39,-0.23 1|0:1:-5,-0,-2.46 0|0:0:-0.18,-0.48,-2.2 1|0:1:-4.7,-0,-4.4 22 50937449 rs141059159 A G 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;RSQ=0.5581;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.01,-1.72,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.01,-1.85,-5 22 50937462 rs111895783 A G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=A;AC=54;LDAF=0.0287;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.8642;AVGPOST=0.9906;AF=0.02;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.15:-1.59,-0.01,-4.7 0|0:0:-0.04,-1.09,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.02,-1.33,-5 22 50937521 rs143352905 G A 100 PASS AVGPOST=0.99;AA=G;AN=2184;LDAF=0.0239;THETA=0.0005;VT=SNP;ERATE=0.001;RSQ=0.8218;AC=44;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.18,-0.47,-2.81 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.25,-0.4,-1.38 0|0:0:-0.2,-0.44,-2.12 0|0:0:-0.2,-0.44,-2 22 50937733 rs190284749 G A 100 PASS AVGPOST=0.9963;AA=G;AN=2184;RSQ=0.4428;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50937735 rs146766056 G A 100 PASS AA=G;AN=2184;ERATE=0.0009;THETA=0.0005;LDAF=0.0084;VT=SNP;AC=14;RSQ=0.6821;SNPSOURCE=LOWCOV;AVGPOST=0.9932;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0.05:-0.1,-0.7,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50937743 rs140375652 C T 100 PASS AA=C;AN=2184;THETA=0.0008;RSQ=0.734;LDAF=0.0125;VT=SNP;AC=22;ERATE=0.0008;AVGPOST=0.9918;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50937793 rs7292275 G A 100 PASS ERATE=0.0004;RSQ=0.9917;AA=G;AN=2184;VT=SNP;LDAF=0.1348;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=294;THETA=0.0003;AF=0.13;AMR_AF=0.09;AFR_AF=0.42;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.04,-1.02,-5 0|0:0:-0.12,-0.61,-3.1 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.63 22 50937810 . TC T 55 PASS AC=17;RSQ=0.5563;AN=2184;VT=INDEL;THETA=0.0008;AVGPOST=0.9859;ERATE=0.0048;LDAF=0.0128;AF=0.01;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-1.2,-17.5 0|0:0:0,-0.3,-4.4 0|0:0.05:0,0,0 0|0:0.4:0,0,0 0|0:0.4:0,-0.3,-3.2 22 50937858 rs138120550 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=13;VT=SNP;THETA=0.0011;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9372;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-2.26,-5 0|0:0:-0.02,-1.39,-5 0|0:0:-0,-2.26,-5 22 50937900 rs11912319 A G 100 PASS AC=261;ERATE=0.0005;AN=2184;RSQ=0.9753;LDAF=0.1205;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9931;THETA=0.0007;AF=0.12;ASN_AF=0.24;AMR_AF=0.13;AFR_AF=0.05;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.03,-1.22,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.18,-0.46,-3.02 22 50937931 rs192543241 G C 100 PASS AVGPOST=0.9986;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5149;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.07,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0.16,-0.5,-3.55 22 50937969 rs9616786 T G 100 PASS AVGPOST=0.9985;LDAF=0.1274;AA=T;AN=2184;RSQ=0.9944;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=278;ERATE=0.0003;AF=0.13;ASN_AF=0.03;AMR_AF=0.14;AFR_AF=0.12;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.12,-0.63,-4.1 0|1:1:-5,-0.73,-0.09 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0.11,-0.64,-4 22 50938061 rs184963898 G A 100 PASS AC=7;THETA=0.0021;RSQ=0.6449;AA=G;AN=2184;LDAF=0.0032;AVGPOST=0.9972;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.1,-0.69,-3.8 0|0:0:-0.18,-0.47,-2.15 0|0:0:-0.16,-0.5,-3.59 22 50938154 rs79758808 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;RSQ=0.5494;VT=SNP;AVGPOST=0.9993;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0,-2.39,-5 22 50938275 . A AT 193 PASS AVGPOST=0.9633;LDAF=0.0391;THETA=0.0004;AN=2184;VT=INDEL;AC=56;ERATE=0.006;RSQ=0.6216;AF=0.03;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-1.2,-9.9 0|0:0:0,-0.3,-2.5 0|0:0:0,-1.2,-9.7 0|0:0.05:0,-1.2,-9.8 0|0:0:0,-0.3,-2.5 22 50938280 rs139121879 T C 100 PASS AA=T;AN=2184;AC=6;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0029;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9349;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0,-2.58,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.19,-0.46,-2.17 22 50938296 rs189028555 C T 100 PASS LDAF=0.0021;AA=C;AN=2184;RSQ=0.4433;THETA=0.0005;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.18,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.19,-0.45,-2.12 22 50938338 rs180795185 G A 100 PASS AVGPOST=0.9963;AA=G;AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.335;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.02,-1.37,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.17,-5 0|0:0:-0.48,-0.48,-0.48 22 50938386 rs143249541 T C 100 PASS RSQ=0.7892;THETA=0.0004;AA=T;AN=2184;ERATE=0.0009;VT=SNP;AC=22;AVGPOST=0.9938;SNPSOURCE=LOWCOV;LDAF=0.0121;AF=0.01;ASN_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.7,-4.1 0|0:0:-0.48,-0.48,-0.48 22 50938611 . T TC 175 PASS THETA=0.0004;RSQ=0.8862;AN=2184;VT=INDEL;AC=320;AVGPOST=0.9519;LDAF=0.1622;ERATE=0.0071;AF=0.15;ASN_AF=0.01;AMR_AF=0.1;AFR_AF=0.43;EUR_AF=0.09 GT:DS:GL 0|0:0:0,-0.6,-3.8 0|0:0:0,-1.2,-11.5 0|0:0.05:0,0,0 0|0:0:0,-0.9,-11.1 0|0:0.05:0,0,0 22 50938699 rs185413503 G T 100 PASS ERATE=0.0004;RSQ=0.525;AA=G;AN=2184;LDAF=0.0018;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0.1:-0.18,-0.47,-2.42 0|1:1:-5,-0,-4 0|0:0:-0.01,-1.82,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-2.11,-5 22 50938771 rs78540291 G A 100 PASS ERATE=0.0005;AVGPOST=0.9957;THETA=0.0004;RSQ=0.9838;AA=G;AN=2184;AC=277;VT=SNP;LDAF=0.1285;SNPSOURCE=LOWCOV;AF=0.13;ASN_AF=0.03;AMR_AF=0.14;AFR_AF=0.12;EUR_AF=0.2 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.17 0|1:1:-0.15,-0.54,-2.68 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.09,-5 22 50938821 . GGC G 35 PASS LDAF=0.302;RSQ=0.2866;AN=2184;AC=378;VT=INDEL;THETA=0.001;AVGPOST=0.656;ERATE=0.0659;AF=0.17;ASN_AF=0.18;AMR_AF=0.16;AFR_AF=0.15;EUR_AF=0.19 GT:DS:GL 1|0:1.2:0,0,0 0|0:0.45:0,0,0 0|0:0.65:0,0,0 0|0:0.25:0,0,0 0|0:0.4:0,0,0 22 50938970 rs189452432 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;RSQ=0.7567;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.06,-0.91,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.04,-1.03,-5 22 50938983 rs182052140 G T 100 PASS ERATE=0.0005;AVGPOST=0.9994;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0007;RSQ=0.5838;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0,-2.74,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.02,-1.28,-5 22 50939004 rs117011276 G A 100 PASS AC=7;THETA=0.0022;AA=G;AN=2184;RSQ=0.8106;AVGPOST=0.9981;VT=SNP;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 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rs5771063 A G 100 PASS AVGPOST=0.9738;RSQ=0.9328;THETA=0.0004;AA=G;AN=2184;AC=1882;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0029;LDAF=0.8539;AF=0.86;ASN_AF=1;AMR_AF=0.91;AFR_AF=0.56;EUR_AF=0.93 GT:DS:GL 1|1:1.95:-5,-0.86,-0.06 1|1:1.55:-0.48,-0.48,-0.48 1|1:2:-2.94,-0.48,-0.18 1|1:1.85:-4.7,-0.03,-1.15 1|1:2:-0.48,-0.48,-0.48 22 50940073 rs111433711 G A 100 PASS ERATE=0.0013;AVGPOST=0.9903;AA=G;AN=2184;LDAF=0.0057;VT=SNP;RSQ=0.3473;THETA=0.0006;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.34,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0.11,-0.65,-3.27 0|0:0:-0.08,-0.76,-5 0|0:0.1:-0.48,-0.48,-0.48 22 50940120 rs9628195 G A 100 PASS LDAF=0.0431;AC=94;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9872;ERATE=0.0003;AVGPOST=0.9982;AF=0.04;AMR_AF=0.02;AFR_AF=0.18 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.3,-0.43,-0.88 0|0:0:-0.03,-1.23,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.11,-0.64,-4.1 22 50940138 rs55772048 C CA 407 PASS 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TGCTCCTCA T 75 PASS AC=18;AN=2184;VT=INDEL;THETA=0.0008;LDAF=0.0107;ERATE=0.0011;RSQ=0.6374;AVGPOST=0.9897;AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-0.9,-21.3 0|0:0:0,-0.3,-3 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-3.3 22 50942497 rs2334101 G A 100 PASS AC=1070;LDAF=0.4756;THETA=0.0004;AA=G;AN=2184;ERATE=0.0184;RSQ=0.7269;VT=SNP;AVGPOST=0.8233;SNPSOURCE=LOWCOV;AF=0.49;ASN_AF=0.68;AMR_AF=0.51;AFR_AF=0.3;EUR_AF=0.46 GT:DS:GL 1|1:1.95:-3.32,-0.48,-0.18 1|1:1.65:-0.29,-0.43,-0.92 1|0:0.8:-0.48,-0.48,-0.48 0|0:0.35:-0.18,-0.47,-2.44 1|0:1.1:-3.52,-0.47,-0.18 22 50942534 rs60335508 A G 100 PASS AA=G;AN=2184;ERATE=0.0201;RSQ=0.3795;AVGPOST=0.6763;VT=SNP;THETA=0.0006;AC=541;LDAF=0.337;SNPSOURCE=LOWCOV;AF=0.25;ASN_AF=0.19;AMR_AF=0.23;AFR_AF=0.27;EUR_AF=0.29 GT:DS:GL 0|0:0.6:-0.48,-0.48,-0.48 0|0:0.4:-0.48,-0.48,-0.48 0|1:1.15:-0.48,-0.48,-0.48 0|0:0.5:-0.85,-0.39,-0.34 0|0:0.45:-0.48,-0.48,-0.48 22 50942560 rs61372881 A G 100 PASS AN=2184;LDAF=0.273;VT=SNP;ERATE=0.0177;AA=A;AVGPOST=0.6467;THETA=0.0019;SNPSOURCE=LOWCOV;AC=329;RSQ=0.2648;AF=0.15;ASN_AF=0.2;AMR_AF=0.16;AFR_AF=0.12;EUR_AF=0.13 GT:DS:GL 1|1:1.05:-0.48,-0.48,-0.48 0|0:0.4:-0.48,-0.48,-0.48 0|0:0.25:-0.48,-0.48,-0.48 0|0:0.1:-0.36,-0.41,-0.77 0|0:0.3:-0.48,-0.48,-0.48 22 50942623 rs188985791 A G 100 PASS AC=1559;AA=G;AN=2184;ERATE=0.0227;VT=SNP;THETA=0.0045;SNPSOURCE=LOWCOV;RSQ=0.3271;AVGPOST=0.6302;LDAF=0.6339;AF=0.71;ASN_AF=0.73;AMR_AF=0.78;AFR_AF=0.64;EUR_AF=0.72 GT:DS:GL 1|1:1.45:-0.48,-0.48,-0.48 1|1:1.45:-0.48,-0.48,-0.48 1|1:1.6:-0.48,-0.48,-0.48 1|1:1.2:-0.48,-0.48,-0.48 1|0:1.05:-0.48,-0.48,-0.48 22 50942630 rs192045599 G A 100 PASS LDAF=0.2154;THETA=0.0035;RSQ=0.2951;AA=G;AN=2184;AVGPOST=0.7125;AC=236;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0151;AF=0.11;ASN_AF=0.12;AMR_AF=0.06;AFR_AF=0.12;EUR_AF=0.11 GT:DS:GL 0|0:0.2:-0.48,-0.48,-0.48 0|0:0.6:-0.48,-0.48,-0.48 0|0:0.2:-0.48,-0.48,-0.48 0|0:0.5:-0.48,-0.48,-0.48 0|0:0.5:-0.22,-0.42,-1.76 22 50942758 rs183650051 C G 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.86,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-2.75,-5 0|0:0:-0.01,-1.76,-5 22 50942761 rs60021445 A G 100 PASS RSQ=0.9875;AA=G;AN=2184;AC=344;VT=SNP;THETA=0.0028;LDAF=0.1592;SNPSOURCE=LOWCOV;ERATE=0.0022;AVGPOST=0.9958;AF=0.16;ASN_AF=0.03;AMR_AF=0.17;AFR_AF=0.18;EUR_AF=0.23 GT:DS:GL 0|0:0:-0.01,-1.64,-5 0|0:0:-0,-4.22,-5 0|1:1:-5,0,-5 1|0:1:-5,0,-5 0|1:1:-2.37,-0,-5 22 50942862 rs143227882 C G 100 PASS AC=7;AA=C;AN=2184;RSQ=0.9386;VT=SNP;LDAF=0.0034;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0032;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 22 50942955 . GC G 61 PASS THETA=0.0009;AC=35;AN=2184;VT=INDEL;RSQ=0.5464;AVGPOST=0.9717;ERATE=0.0017;LDAF=0.0265;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.6,-8.6 0|0:0:0,0,0 0|0:0:0,0,0 1|0:0.8:0,0,0 0|1:0.8:0,0,0 22 50943004 rs762671 C A 100 PASS AA=C;AN=2184;AC=344;VT=SNP;RSQ=0.9925;LDAF=0.1587;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;AVGPOST=0.9974;AF=0.16;ASN_AF=0.03;AMR_AF=0.16;AFR_AF=0.18;EUR_AF=0.24 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.11,-0.64,-2.52 0|1:1:-4.7,-0.25,-0.36 1|0:1:-5,0,-5 0|1:1:-5,-0,-4.7 22 50943010 rs762670 G A 100 PASS RSQ=0.9917;AA=G;AN=2184;AC=344;VT=SNP;LDAF=0.1584;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.16;ASN_AF=0.03;AMR_AF=0.16;AFR_AF=0.18;EUR_AF=0.24 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.01,-1.51,-5 0|1:1:-4.4,-0.25,-0.37 1|0:1:-5,0,-5 0|1:1:-5,0,-5 22 50943094 rs2301150 G A 100 PASS ERATE=0.0004;THETA=0.0015;AA=G;AN=2184;RSQ=0.9233;AVGPOST=0.9997;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;ASN_AF=0.01 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ERATE=0.0004;AA=C;AN=2184;AC=49;VT=SNP;THETA=0.0057;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.9828;LDAF=0.0224;AF=0.02;AMR_AF=0.01;AFR_AF=0.1 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.21,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.92,-5 0|0:0:-0.01,-1.86,-5 22 50944491 rs141408392 G A 100 PASS ERATE=0.0005;AVGPOST=1;THETA=0.0032;AA=G;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-3.06,-5 22 50944492 rs112782856 C T 100 PASS ERATE=0.0005;RSQ=0.878;AN=2184;AVGPOST=0.9997;VT=SNP;AA=c;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-3.04,-5 22 50944518 rs147072080 C T 100 PASS THETA=0.0009;AVGPOST=1;LDAF=0.0041;AA=C;AN=2184;VT=SNP;AC=9;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-3.22,-5 0|0:0:-0,-2,-5 22 50944584 rs190624637 G A 100 PASS AA=G;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0052;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.69,-5 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.9,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.22,-5 22 50944636 rs182302980 G A 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;THETA=0.0019;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0,-1.95,-5 0|0:0:-0.05,-1,-4.22 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.72,-5 22 50945119 rs111278766 G A 100 PASS AVGPOST=1;AA=g;AN=2184;LDAF=0.011;VT=SNP;AC=24;RSQ=0.9981;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50945123 rs185129725 G A 100 PASS AA=g;AN=2184;VT=SNP;AC=31;RSQ=0.9928;AVGPOST=0.9998;LDAF=0.0143;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;AF=0.01;AMR_AF=0.08;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50945256 rs131824 A G 100 PASS AC=727;LDAF=0.333;AA=g;AN=2184;VT=SNP;RSQ=0.9961;ERATE=0.0008;AVGPOST=0.9973;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.33;ASN_AF=0.03;AMR_AF=0.36;AFR_AF=0.53;EUR_AF=0.42 GT:DS:GL 0|0:0:-0,-3.8,-5 1|0:1:-5,0,-5 1|1:2:-5,-5,0 0|1:1:-5,0,-5 0|0:0:0,-5,-5 22 50945478 rs188962114 T G 100 PASS AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6867;ERATE=0.0003;AA=t;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.18,-0.47,-2.33 0|0:0:-0.04,-1.05,-5 0|0:0:-0.01,-1.66,-5 0|0:0:0,-5,-5 22 50945554 rs181097680 G A 100 PASS RSQ=0.6772;AA=g;AN=2184;VT=SNP;THETA=0.0018;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0.11,-0.64,-2.52 0|0:0:-0.13,-0.6,-3.03 0|0:0:-0,-3.09,-5 0|0:0:-0,-4.7,-5 22 50945656 rs150240876 G A 100 PASS ERATE=0.0004;AA=g;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9989;RSQ=0.6397;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0.07,-0.82,-4.4 0|0:0:-0.05,-0.99,-5 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0,-2.25,-5 22 50945657 rs138952741 G A 100 PASS THETA=0.0009;ERATE=0.0005;AA=g;AN=2184;AC=55;LDAF=0.0274;VT=SNP;RSQ=0.8838;AVGPOST=0.9915;SNPSOURCE=LOWCOV;AF=0.03;ASN_AF=0.0017;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.01,-1.89,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.11,-0.67,-3.4 0|0:0.15:-0.21,-0.42,-1.9 0|0:0:-0,-2.23,-5 22 50945681 rs149423227 G A 100 PASS AVGPOST=0.9985;AA=g;AN=2184;RSQ=0.8966;THETA=0.0005;VT=SNP;AC=9;SNPSOURCE=LOWCOV;LDAF=0.0048;ERATE=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.02,-1.33,-5 0|0:0:-0.17,-0.49,-2.68 0|0:0:-0,-2.18,-5 22 50945748 rs144610017 G T 100 PASS ERATE=0.0004;LDAF=0.0024;THETA=0.0002;RSQ=0.6503;AA=g;AN=2184;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.91,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.09,-0.75,-5 0|0:0.05:-0.06,-0.9,-5 22 50945799 rs41281543 C G 100 PASS LDAF=0.1379;AVGPOST=0.9943;AN=2184;AC=302;VT=SNP;AA=c;THETA=0.0006;RSQ=0.9824;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.14;ASN_AF=0.3;AMR_AF=0.15;AFR_AF=0.09;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.02,-1.28,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.17,-0.5,-2.82 0|0:0:-0,-2.4,-5 22 50945933 rs41282345 G T 100 PASS ERATE=0.0005;AC=30;LDAF=0.0141;AA=g;AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9989;RSQ=0.964;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.04,-1.06,-4.7 0|0:0:-0.19,-0.47,-2.18 1|0:1:-3,-0.48,-0.18 0|1:1:-5,-0,-2.76 22 50946587 rs185542668 C T 100 PASS AC=17;AA=C;AN=2184;RSQ=0.4166;VT=SNP;ERATE=0.0017;SNPSOURCE=LOWCOV;AVGPOST=0.9781;THETA=0.0007;LDAF=0.0146;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.35,-0.41,-0.78 0|0:0.45:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.13 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.48,-0.48,-0.48 22 50946588 rs73891260 C G 100 PASS RSQ=0.9572;AA=G;AN=2184;THETA=0.0001;AVGPOST=0.9853;VT=SNP;ERATE=0.0017;LDAF=0.1246;SNPSOURCE=LOWCOV;AC=264;AF=0.12;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.45;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.34,-0.44,-0.75 1|0:1:-2.93,-0.47,-0.18 0|1:1:-0.48,-0.48,-0.48 22 50946618 rs73891261 T G 100 PASS AA=T;AN=2184;ERATE=0.0044;VT=SNP;AC=127;RSQ=0.8112;SNPSOURCE=LOWCOV;LDAF=0.0684;THETA=0.0003;AVGPOST=0.968;AF=0.06;AMR_AF=0.03;AFR_AF=0.22;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.36 0|0:0.2:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.85,-5 0|0:0:-0.11,-0.64,-4.4 0|0:0:-0.11,-0.64,-4 22 50946631 rs190231246 A G 100 PASS ERATE=0.0005;AN=2184;VT=SNP;AA=A;AC=9;LDAF=0.0061;RSQ=0.7105;AVGPOST=0.9959;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0041;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.2,-0.45,-2.14 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.83,-5 0|0:0:-0.09,-0.71,-5 0|0:0:-0.06,-0.86,-5 22 50946956 rs141530541 G A 100 PASS AC=88;AA=G;AN=2184;VT=SNP;ERATE=0.0019;RSQ=0.7668;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0497;AVGPOST=0.9707;AF=0.04;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.08;EUR_AF=0.03 GT:DS:GL 0|0:0.1:-0.11,-0.66,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.45,-1.17 1|0:1:-0.19,-0.46,-2.36 0|1:1.05:-0.48,-0.48,-0.48 22 50946965 rs131823 T C 100 PASS LDAF=0.9614;AA=C;AN=2184;THETA=0.0005;VT=SNP;AC=2104;ERATE=0.0011;SNPSOURCE=LOWCOV;RSQ=0.8265;AVGPOST=0.983;AF=0.96;ASN_AF=1;AMR_AF=0.96;AFR_AF=0.98;EUR_AF=0.93 GT:DS:GL 1|1:2:-5,-0.88,-0.06 1|1:2:-0.48,-0.48,-0.48 1|1:2:-0.44,-0.46,-0.54 1|1:2:-3.01,-0.48,-0.18 1|1:2:-0.48,-0.48,-0.48 22 50947116 rs180795295 A G 100 PASS ERATE=0.0005;AN=2184;VT=SNP;RSQ=0.5436;AA=A;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0,-2.58,-5 0|0:0:-0,-3.8,-5 0|0:0:-0.16,-0.51,-2.6 0|0:0:-0,-2.81,-5 22 50947120 . TTGAG T 465 PASS THETA=0.0009;AVGPOST=0.9985;LDAF=0.0066;AN=2184;AC=13;VT=INDEL;RSQ=0.9077;ERATE=0.0003;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-0.3,-8.2 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-8.2 0|0:0:0,0,0 22 50947145 rs186129255 C G 100 PASS LDAF=0.0027;AA=C;RSQ=0.5819;AN=2184;AVGPOST=0.9972;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.25,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.01,-1.56,-5 22 50947196 rs45529631 T C 100 PASS THETA=0.0009;RSQ=0.935;AA=T;AN=2184;VT=SNP;AC=23;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;LDAF=0.0108;AF=0.01;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-3.15,-5 0|0:0:-0,-3.08,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.96,-5 22 50947229 rs192241764 A G 100 PASS ERATE=0.0004;AN=2184;RSQ=0.8251;THETA=0.0008;AVGPOST=0.9996;VT=SNP;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.19,-0.47,-2.34 0|0:0:-0,-3.85,-5 0|0:0:-0,-2.62,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0,-2.67,-5 22 50947293 rs148425663 C G 100 PASS AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0011;RSQ=0.809;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0,-3.59,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0,-2.12,-5 22 50947345 rs183921414 C T 100 PASS AA=C;RSQ=0.7242;AN=2184;VT=SNP;AVGPOST=0.9991;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.36,-5 22 50947348 rs187366045 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9988;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;RSQ=0.6283;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.85,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.91,-5 22 50947355 rs141744057 C G 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.8434;AVGPOST=0.9996;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.82,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.12,-5 22 50947414 rs150555664 A G 100 PASS RSQ=0.876;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.84,-5 22 50947431 rs139624774 C T 100 PASS RSQ=0.9911;AA=C;AN=2184;AC=29;AVGPOST=0.9997;VT=SNP;LDAF=0.0134;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.08,-0.77,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-1.99,-5 1|0:1:-4.4,-0,-3.15 0|1:1:-5,0,-5 22 50947456 rs190717200 A G 100 PASS LDAF=0.0016;THETA=0.0004;AN=2184;RSQ=0.841;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.34,-5 0|0:0:-0.05,-1,-5 0|0:0:-0,-2.11,-5 22 50947463 rs149734028 C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.36,-5 22 50947533 rs111866793 AT A 84 PASS RSQ=0.8588;AN=2184;VT=INDEL;LDAF=0.0165;ERATE=0.001;AC=32;THETA=0.0049;AVGPOST=0.9937;AF=0.01;AMR_AF=0.01;AFR_AF=0.05;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-0.9,-10.8 0|0:0:0,-0.3,-3.6 0|0:0:0,0,0 0|0:0:0,-0.9,-10.9 0|0:0:0,-0.3,-3.6 22 50947541 rs9628170 T C 100 PASS LDAF=0.0966;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.997;SNPSOURCE=LOWCOV;AC=211;ERATE=0.0003;AVGPOST=0.9992;AF=0.1;AMR_AF=0.04;AFR_AF=0.4 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.04,-1.09,-5 22 50947546 rs147847045 A G 100 PASS THETA=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AA=A;RSQ=0.7249;ERATE=0.0008;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.1,-0.71,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.57,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.09,-5 22 50947572 rs116491248 A G 100 PASS AN=2184;AVGPOST=0.9996;VT=SNP;AC=10;AA=A;RSQ=0.9592;SNPSOURCE=LOWCOV;THETA=0.001;LDAF=0.0048;ERATE=0.0003;AF=0.0046;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.17,-0.5,-2.81 0|0:0:-0.04,-1.08,-5 22 50947600 rs77958389 G A 100 PASS RSQ=0.9934;AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=25;LDAF=0.0115;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.51,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0.01,-1.59,-5 22 50947611 rs6010121 A G 100 PASS LDAF=0.1272;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=278;ERATE=0.0003;RSQ=0.9985;AVGPOST=0.9995;THETA=0.0003;AF=0.13;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.47;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0,-3.38,-5 1|0:1:-5,-0.11,-0.67 0|1:1:-5,-0,-4.1 22 50947672 rs183159164 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.8067;AVGPOST=0.9994;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0,-2.33,-5 0|0:0:-0,-2.11,-5 22 50947695 rs139919086 C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0011;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.98,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-2.61,-5 0|0:0:-0.01,-1.55,-5 22 50947712 rs187088023 A T 100 PASS AN=2184;THETA=0.0005;LDAF=0.0015;VT=SNP;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.6662;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.68,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-3.34,-5 0|0:0:-0,-2.62,-5 0|0:0:-0.07,-0.86,-5 22 50947718 rs61224378 C T 100 PASS LDAF=0.0013;AA=C;AN=2184;VT=SNP;AVGPOST=0.9993;RSQ=0.7547;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.67,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0,-3.27,-5 0|0:0:-0,-2.71,-5 0|0:0:-0.02,-1.27,-5 22 50947743 rs145336973 G C 100 PASS AA=G;AN=2184;LDAF=0.0032;AC=6;VT=SNP;RSQ=0.9023;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AVGPOST=0.9992;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-2.7,-5 0|0:0:-0,-2.35,-5 22 50947917 rs6010122 T C 100 PASS AA=C;LDAF=0.1272;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=278;ERATE=0.0003;RSQ=0.998;AF=0.13;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.47;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-2.63,-5 0|0:0:-0.01,-1.81,-5 1|0:1:-5,0,-5 0|1:1:-2.19,-0,-3.05 22 50947955 rs149155363 A G 100 PASS AN=2184;THETA=0.0005;VT=SNP;AA=A;RSQ=0.5323;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9987;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.84,-5 0|0:0:-0,-2.32,-5 0|0:0:-0,-1.98,-5 0|0:0:-0.02,-1.33,-5 22 50948049 rs184435453 C T 100 PASS AA=C;AN=2184;RSQ=0.6651;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.03,-1.11,-5 22 50948109 rs187634800 A C 100 PASS ERATE=0.0004;RSQ=0.9473;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;AA=A;LDAF=0.0029;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0.18,-0.47,-3.09 22 50948310 rs131822 A G 100 PASS ERATE=0.0005;RSQ=0.9871;AA=G;AN=2184;THETA=0.0008;VT=SNP;AC=1046;AVGPOST=0.9915;SNPSOURCE=LOWCOV;LDAF=0.4794;AF=0.48;ASN_AF=0.34;AMR_AF=0.49;AFR_AF=0.7;EUR_AF=0.43 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0.1:-0.19,-0.46,-2.23 1|1:2:-5,-0.82,-0.07 1|1:2:-5,-0.72,-0.09 0|1:1:-2.47,-0.02,-1.42 22 50948319 rs193210047 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;RSQ=0.677;THETA=0.0005;AVGPOST=0.999;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0.1:-0.1,-0.7,-4.7 0|0:0:-0.09,-0.74,-4.7 0|0:0:-0.01,-1.52,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.11,-0.64,-4.1 22 50948356 rs115058888 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;THETA=0.0005;VT=SNP;AC=14;RSQ=0.8456;LDAF=0.0074;SNPSOURCE=LOWCOV;AVGPOST=0.9974;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.04,-1.08,-5 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.19,-0.46,-2.39 0|0:0:-0.1,-0.67,-5 22 50948391 rs6010123 A G 100 PASS ERATE=0.0005;RSQ=0.9937;AA=G;AN=2184;AC=305;THETA=0.0005;VT=SNP;LDAF=0.1393;SNPSOURCE=LOWCOV;AVGPOST=0.9974;AF=0.14;ASN_AF=0.01;AMR_AF=0.06;AFR_AF=0.52;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.19,-0.46,-2.23 0|0:0:-0.11,-0.64,-4.1 1|0:1:-2.18,-0.02,-1.45 0|1:1:-2.8,-0,-2.25 22 50948416 rs151287983 C T 100 PASS AA=C;RSQ=0.3581;THETA=0.0004;AN=2184;LDAF=0.0018;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9974;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.12,-0.62,-3.92 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.11,-0.67,-5 22 50948499 rs140546440 C T 100 PASS ERATE=0.0005;AA=C;AC=28;AN=2184;AVGPOST=0.9962;THETA=0.0005;VT=SNP;RSQ=0.8985;LDAF=0.0147;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.12,-0.62,-3.22 0|0:0:-0.05,-0.97,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.08,-0.75,-5 22 50948504 rs145920696 C T 100 PASS AC=12;ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9967;VT=SNP;RSQ=0.7868;SNPSOURCE=LOWCOV;LDAF=0.0065;THETA=0.0003;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0:-0.12,-0.62,-3.21 0|0:0:-0.03,-1.21,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.08,-0.76,-5 22 50948649 rs138467341 C T 100 PASS LDAF=0.0123;AA=C;THETA=0.0004;AN=2184;RSQ=0.9223;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0006;AC=25;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.23,-0.45,-1.24 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.1,-0.69,-4.4 0|0:0:-0.22,-0.42,-1.7 22 50948652 rs11091003 T C 100 PASS AA=T;AN=2184;VT=SNP;AC=97;ERATE=0.0008;RSQ=0.9669;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9958;LDAF=0.046;AF=0.04;AMR_AF=0.02;AFR_AF=0.18 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.2,-0.48,-1.46 0|0:0:-0.2,-0.44,-2.04 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.22,-0.42,-1.7 22 50948813 rs150121997 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;AC=32;LDAF=0.015;RSQ=0.9802;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.51,-5 1|0:1:-5,-0,-4.4 0|1:1:-4.4,-0,-5 22 50948878 rs185647467 A C 100 PASS AN=2184;VT=SNP;THETA=0.0006;AA=A;RSQ=0.5597;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-2.53,-5 0|0:0:-0.01,-1.47,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.01,-1.51,-5 22 50948964 rs137994815 C A 100 PASS AC=12;ERATE=0.0004;AA=C;AN=2184;LDAF=0.0057;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9995;RSQ=0.9603;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.6,-3.8 0|0:0:-0.05,-0.95,-5 0|0:0:-0.08,-0.77,-5 22 50949226 rs149472397 C T 100 PASS AA=C;THETA=0.0004;AN=2184;RSQ=0.7534;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-2.4,-5 0|0:0:-0,-2.83,-5 0|0:0:-0.02,-1.29,-5 22 50949246 rs6009976 C T 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;AVGPOST=0.9993;LDAF=0.127;RSQ=0.9978;SNPSOURCE=LOWCOV;AC=278;THETA=0.0007;AF=0.13;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.47;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.6,-5 0|0:0:-0,-2.57,-5 1|0:1:-2.82,-0,-5 0|1:0.95:-0.01,-1.59,-5 22 50949270 rs28421223 A G 100 PASS THETA=0.0009;ERATE=0.0004;LDAF=0.0954;RSQ=0.9969;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=209;AVGPOST=0.9992;AF=0.1;AMR_AF=0.04;AFR_AF=0.4 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.11,-0.64,-4.1 22 50949297 rs144046314 A G 100 PASS ERATE=0.0004;RSQ=0.9219;THETA=0.0004;AN=2184;VT=SNP;AA=A;AC=14;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.007;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.26,-0.44,-1.07 0|0:0:-0.18,-0.47,-2.15 0|0:0:-0.48,-0.48,-0.48 22 50949373 rs188812156 T C 100 PASS ERATE=0.0004;LDAF=0.0009;AA=T;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;RSQ=0.5176;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0.19,-0.45,-2.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.42,-1.72 22 50949376 rs148674269 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=8;LDAF=0.0043;VT=SNP;RSQ=0.5487;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.995;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.2,-0.45,-2.16 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50949383 rs6010124 T A 100 PASS RSQ=0.8949;AA=T;AN=2184;VT=SNP;AC=58;LDAF=0.0287;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.992;THETA=0.0003;AF=0.03;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.19,-0.45,-2.21 0|0:0:-0.48,-0.48,-0.48 1|0:0.6:-0.48,-0.48,-0.48 0|1:0.75:-0.48,-0.48,-0.48 22 50949396 rs6009977 T C 100 PASS LDAF=0.1261;AA=C;AC=266;THETA=0.0004;AN=2184;RSQ=0.9331;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0029;AVGPOST=0.9742;AF=0.12;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.46;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:0.6:-0.48,-0.48,-0.48 0|1:0.75:-0.48,-0.48,-0.48 22 50949407 rs139748626 C T 100 PASS ERATE=0.0004;LDAF=0.0067;AA=C;AN=2184;AC=13;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;RSQ=0.8878;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.47,-2.02 0|0:0:-0.18,-0.47,-2.13 0|0:0.05:-0.48,-0.48,-0.48 22 50949417 rs145360172 A G 100 PASS AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9923;AA=A;ERATE=0.0008;LDAF=0.02;RSQ=0.8416;SNPSOURCE=LOWCOV;AC=39;AF=0.02;ASN_AF=0.0035;AMR_AF=0.09;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.33,-0.43,-0.8 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.22,-0.42,-1.77 22 50949461 rs12170209 G A 100 PASS 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AA=T;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.7976;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.28,-5 0|0:0:-0,-2.88,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.62,-5 22 50951347 rs115920265 A G 100 PASS ERATE=0.0004;RSQ=0.9871;AN=2184;VT=SNP;AC=68;AA=A;AVGPOST=0.9989;LDAF=0.0308;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.03;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.07;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.28,-5 0|0:0:-0,-3.42,-5 0|0:0:-0,-3.38,-5 1|0:1:-5,-0.21,-0.42 0|1:1:-5,0,-5 22 50951463 rs147395522 C T 100 PASS ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.7455;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0,-2.94,-5 0|0:0:-0,-3.38,-5 0|0:0:-0.01,-1.64,-5 0|0:0:-0,-3.3,-5 22 50951482 rs186254015 T C 100 PASS AA=T;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0006;RSQ=0.7756;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 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50951768 rs68095696 CTG C 351 PASS THETA=0.0004;AN=2184;VT=INDEL;RSQ=0.8718;ERATE=0.0043;AVGPOST=0.9748;AC=147;LDAF=0.0707;AF=0.07;AMR_AF=0.02;AFR_AF=0.28;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-1.2,-22.5 0|0:0.1:0,0,0 0|0:0:0,0,0 1|0:0.55:0,-0.3,-5.6 0|0:0.5:0,0,0 22 50951820 rs183023052 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=6;THETA=0.0005;VT=SNP;RSQ=0.912;LDAF=0.0029;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.3 0|0:0:-0.18,-0.47,-2.16 0|0:0:-0.22,-0.43,-1.79 22 50951872 rs112663978 C G 100 PASS AA=C;RSQ=0.9466;AN=2184;AC=45;THETA=0.0005;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.021;AF=0.02;AMR_AF=0.01;AFR_AF=0.08;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.05,-0.98,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.2,-0.44,-2.13 0|0:0:-0.48,-0.48,-0.48 22 50951925 rs187768539 C A 100 PASS 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AG A 136 PASS ERATE=0.0021;RSQ=0.9173;AN=2184;VT=INDEL;AVGPOST=0.9548;LDAF=0.2501;AC=540;THETA=0.0007;AF=0.25;ASN_AF=0.29;AMR_AF=0.24;AFR_AF=0.38;EUR_AF=0.13 GT:DS:GL 0|0:0:0,-1.2,-16.8 0|0:0.45:0,0,0 0|0:0:0,-0.3,-4.2 0|1:1:0,-0.3,-4.2 0|0:0:0,0,0 22 50954436 rs131818 GA G 472 PASS AN=2184;RSQ=0.9246;VT=INDEL;AVGPOST=0.9601;THETA=0.0012;ERATE=0.0059;LDAF=0.2646;AC=573;AF=0.26;ASN_AF=0.29;AMR_AF=0.26;AFR_AF=0.4;EUR_AF=0.15 GT:DS:GL 0|0:0:0,-1.2,-18.8 0|0:0.5:0,0,0 0|0:0:0,-0.3,-4.7 0|1:1:0,-0.3,-4.7 0|0:0.05:0,0,0 22 50954580 rs144664354 T G 100 PASS ERATE=0.0005;AA=T;AN=2184;RSQ=0.8141;AVGPOST=0.9996;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.85,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-0.01,-1.9,-5 0|0:0:-0,-3.4,-5 22 50954611 rs139625509 G A 100 PASS AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;THETA=0.0027;RSQ=0.6612;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.4,-5 0|0:0:-0.01,-1.91,-5 0|0:0:-0,-4.4,-5 22 50954635 rs470120 G A 100 PASS ERATE=0.0005;RSQ=0.9848;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;AC=127;LDAF=0.0582;THETA=0.0114;SNPSOURCE=LOWCOV;AF=0.06;ASN_AF=0.01;AMR_AF=0.06;AFR_AF=0.05;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-3.49,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0,-2.5,-5 1|0:1:-4.1,-0,-5 0|1:1:-5,0,-5 22 50954685 rs76014823 G A 100 PASS ERATE=0.0004;LDAF=0.1149;THETA=0.0015;AA=G;AN=2184;RSQ=0.9953;VT=SNP;AVGPOST=0.9989;AC=251;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.27;AMR_AF=0.14;AFR_AF=0.03;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.15,-5 0|0:0:-0,-2.83,-5 0|0:0:0,-5,-5 22 50954754 rs6010135 T G 100 PASS AC=112;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.9971;THETA=0.0007;ERATE=0.0003;LDAF=0.0512;AF=0.05;AMR_AF=0.02;AFR_AF=0.21 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50954765 rs117553400 G T 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.8689;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50954824 rs2032424 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;LDAF=0.0274;VT=SNP;AVGPOST=0.9991;AC=59;RSQ=0.9869;SNPSOURCE=LOWCOV;AF=0.03;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.06 GT:DS:GL 0|1:1:-5,0,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50954868 . T C 100 PASS AVGPOST=1;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50954990 . T TC 386 PASS AN=2184;VT=INDEL;RSQ=0.741;LDAF=0.0094;AC=15;ERATE=0.0015;THETA=0.0007;AVGPOST=0.9941;AF=0.01;ASN_AF=0.0035;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-1.5,-21 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-1.2,-16.8 0|0:0:0,0,0 22 50955032 rs11912147 C G 100 PASS RSQ=0.9958;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0179;AC=39;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50955067 rs79758616 C T 100 PASS AA=C;AN=2184;RSQ=0.9939;AC=16;VT=SNP;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0073;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.24,-5 0|0:0:0,-5,-5 22 50955181 rs11912916 T G 100 PASS RSQ=0.9882;AA=T;AN=2184;AVGPOST=0.9997;LDAF=0.0106;VT=SNP;AC=23;THETA=0.0057;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.1,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.09,-5 0|0:0:-0,-4.7,-5 22 50955365 rs188544863 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;THETA=0.0006;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9538;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.88,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.22,-0.46,-1.25 0|0:0:-0.03,-1.25,-5 0|0:0:-0.01,-1.91,-5 22 50955382 rs146089590 G A 100 PASS THETA=0.0068;ERATE=0.0005;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7834;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.14,-0.57,-3.66 0|0:0:-0.01,-1.64,-5 22 50955399 rs140525 C T 100 PASS AA=C;AN=2184;RSQ=0.9789;THETA=0.0005;VT=SNP;LDAF=0.1786;AVGPOST=0.9919;AC=385;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.18;ASN_AF=0.28;AMR_AF=0.21;AFR_AF=0.1;EUR_AF=0.13 GT:DS:GL 0|0:0:-0,-2.62,-5 0|0:0:-0.12,-0.64,-2.51 0|0:0:-0.12,-0.61,-3.8 0|1:1:-3.52,-0.51,-0.16 0|0:0:-0.03,-1.15,-5 22 50955472 rs116585981 A G 100 PASS THETA=0.0009;AN=2184;RSQ=0.9347;LDAF=0.0125;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=27;AVGPOST=0.9978;ERATE=0.0006;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.02,-1.37,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.31,-5 0|0:0:-0.11,-0.66,-5 22 50955503 rs142390547 C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.7432;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.88,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.02,-5 0|0:0:-0.03,-1.16,-5 22 50955505 rs192933866 T C 100 PASS THETA=0.0021;ERATE=0.0005;RSQ=0.6013;AA=T;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.06,-5 0|0:0:-0.03,-1.21,-5 22 50955538 rs131817 A G 100 PASS LDAF=0.5618;AA=G;AN=2184;RSQ=0.9142;AVGPOST=0.9411;VT=SNP;ERATE=0.029;SNPSOURCE=LOWCOV;THETA=0.0007;AC=1219;AF=0.56;ASN_AF=0.44;AMR_AF=0.55;AFR_AF=0.76;EUR_AF=0.52 GT:DS:GL 1|0:1:-5,0,-5 0|0:0.1:-0.21,-0.46,-1.36 1|1:1.6:-2.39,-0.13,-0.6 1|1:2:-5,-1.76,-0.01 0|1:1:-5,0,-5 22 50955550 rs151334555 C T 100 PASS RSQ=0.7847;AA=C;AN=2184;AC=13;VT=SNP;THETA=0.0011;AVGPOST=0.9954;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0077;AF=0.01;ASN_AF=0.02;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.13,-0.6,-2.96 0|0:0:-0.02,-1.4,-5 0|0:0:-0.01,-1.82,-5 22 50955563 rs139391628 A C 100 PASS AVGPOST=0.9986;AN=2184;VT=SNP;THETA=0.0046;RSQ=0.4566;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3.74,-5 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.13,-0.6,-3.07 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.66,-5 22 50955597 rs116892453 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7571;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.06,-0.86,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-3.49,-5 22 50955598 rs185424149 G T 100 PASS AA=G;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0062;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-4,-5 22 50955615 rs73172241 C T 100 PASS AC=261;AA=C;AN=2184;AVGPOST=0.9846;VT=SNP;RSQ=0.9494;LDAF=0.1233;ERATE=0.0114;SNPSOURCE=LOWCOV;THETA=0.0036;AF=0.12;ASN_AF=0.09;AMR_AF=0.11;AFR_AF=0.09;EUR_AF=0.17 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.23,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0,-2,-5 0|0:0:0,-5,-5 22 50955639 rs75088399 C T 100 PASS AC=12;AA=C;AN=2184;VT=SNP;LDAF=0.0059;AVGPOST=0.9991;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9461;THETA=0.0007;AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.02,-5 0|0:0:-0,-2.49,-5 0|0:0:-0.01,-1.75,-5 0|0:0:0,-5,-5 22 50955782 rs189560836 C T 100 PASS AA=C;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.9359;SNPSOURCE=LOWCOV;THETA=0.0052;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50955833 rs147758819 C T 100 PASS RSQ=0.9517;LDAF=0.0024;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0011;ERATE=0.0008;AC=5;AF=0.0023;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50955946 rs192993579 A G 100 PASS AVGPOST=1;LDAF=0.0009;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;ERATE=0.0009;THETA=0.0041;VT=SNP;RSQ=1;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50955951 rs141239310 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.889;AC=1;THETA=0.011;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50955980 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956026 . C T 100 PASS LDAF=0.0004;AA=C;AN=2184;THETA=0.0008;RSQ=0.8999;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956071 . C G 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956116 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956117 . G A 100 PASS AVGPOST=1;LDAF=0.0009;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;RSQ=0.9756;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956142 rs2269388 C T 100 PASS RSQ=0.9837;LDAF=0.026;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=57;VT=SNP;THETA=0.0011;ERATE=0.0019;AVGPOST=0.9987;AF=0.03;ASN_AF=0.04;AMR_AF=0.08;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956174 . T C 100 PASS AVGPOST=1;AA=T;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956237 . G A 100 PASS THETA=0.0009;AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956370 rs147583129 G T 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0008;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956386 rs56394500 C G 100 PASS ERATE=0.0004;LDAF=0.0169;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=37;RSQ=0.978;AVGPOST=0.999;VT=SNP;THETA=0.0007;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-5,0,-5 0|1:1:-5,0,-5 22 50956395 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956500 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;THETA=0.0024;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956501 rs183646210 G A 100 PASS ERATE=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=8;LDAF=0.0037;VT=SNP;AVGPOST=0.9998;THETA=0.0017;RSQ=0.9803;AF=0.0037;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956503 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0043;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956504 . G A 100 PASS AVGPOST=1;LDAF=0.0009;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956510 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;RSQ=0.9844;VT=SNP;SNPSOURCE=EXOME;THETA=0.0019;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956610 . G A 100 PASS RSQ=0.9049;THETA=0.0054;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956614 rs141520277 G A 100 PASS AVGPOST=1;LDAF=0.0009;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956676 rs143114125 G A 100 PASS ERATE=0.0004;LDAF=0.0009;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.004;RSQ=0.8648;AVGPOST=0.9997;VT=SNP;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956680 . G A 100 PASS AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956723 . C T 100 PASS RSQ=0.8036;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956724 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;THETA=0.0013;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50956836 rs118022654 C G 100 PASS AVGPOST=0.9963;AC=35;AA=C;THETA=0.0032;AN=2184;VT=SNP;RSQ=0.9176;LDAF=0.0177;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.02;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-4.7,-5 22 50956875 rs11913744 T C 100 PASS AA=T;AN=2184;RSQ=0.9895;VT=SNP;AVGPOST=0.9991;THETA=0.0012;SNPSOURCE=LOWCOV;AC=69;ERATE=0.0003;LDAF=0.0319;AF=0.03;AMR_AF=0.01;AFR_AF=0.13 GT:DS:GL 0|0:0:-0,-3.62,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0,-2.4,-5 0|0:0:-0,-2.57,-5 22 50956940 rs148278977 G A 100 PASS AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.6373;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.83,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.49,-5 22 50956951 rs73443351 G T 100 PASS RSQ=0.8949;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0017;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.15,-5 0|0:0:-0.01,-1.71,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-2.01,-5 22 50957115 rs35126828 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.019;AC=41;ERATE=0.0003;RSQ=0.9893;AVGPOST=0.9995;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0,-2.91,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.34,-5 22 50957143 rs141300835 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9975;LDAF=0.0037;AC=6;VT=SNP;ERATE=0.0018;THETA=0.002;RSQ=0.745;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.63,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-3.34,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.61,-5 22 50957150 . C G 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.04,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.94,-5 22 50957180 rs184980625 G A 100 PASS AVGPOST=1;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;THETA=0.001;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.27,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.5,-5 0|0:0:-0,-2.56,-5 22 50957183 rs150405710 G A 100 PASS LDAF=0.0041;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=9;AVGPOST=0.9998;RSQ=0.9747;ERATE=0.0003;THETA=0.0064;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-3.09,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.73,-5 0|0:0:-0,-2.61,-5 22 50957462 rs131816 C T 100 PASS THETA=0.0009;LDAF=0.8005;AA=C;AN=2184;RSQ=0.9906;VT=SNP;AC=1753;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.996;AF=0.8;ASN_AF=0.96;AMR_AF=0.8;AFR_AF=0.7;EUR_AF=0.75 GT:DS:GL 1|1:2:-5,-2.06,-0 1|1:1.95:-5,-1.3,-0.02 0|0:0:-0,-2.46,-5 1|1:2:-5,-0.69,-0.1 1|1:2:-5,-4.7,-0 22 50957501 rs138261040 G A 100 PASS RSQ=0.9745;AVGPOST=0.9994;AA=G;AN=2184;LDAF=0.009;AC=20;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.83,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0,-3.19,-5 22 50957520 rs3091397 G A 100 PASS LDAF=0.7923;THETA=0.0002;AVGPOST=0.9966;AA=G;AN=2184;AC=1733;VT=SNP;RSQ=0.9925;SNPSOURCE=LOWCOV;ERATE=0.0015;AF=0.79;ASN_AF=0.96;AMR_AF=0.78;AFR_AF=0.68;EUR_AF=0.75 GT:DS:GL 1|1:2:-5,-2.03,-0 1|1:1.85:-5,-0.03,-1.24 0|0:0:-0,-2.98,-5 1|1:2:-5,-1.49,-0.01 1|1:2:-5,-1.3,-0.02 22 50957598 rs45499897 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0324;VT=SNP;AA=A;AVGPOST=0.9991;RSQ=0.9897;AC=71;ERATE=0.0003;THETA=0.0003;AF=0.03;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.55,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 1|0:1:-0.99,-0.05,-5 0|1:1:-5,0,-5 22 50957625 rs35941723 C G 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0008;VT=SNP;AC=34;RSQ=0.9869;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0158;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.62,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.63,-5 22 50957701 . G A 100 PASS RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.87,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-1.96,-5 22 50957733 rs17850507 C T 100 PASS AC=12;ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0057;VT=SNP;RSQ=0.9657;THETA=0.0013;AVGPOST=0.9995;AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.72,-5 0|0:0:-0.02,-1.43,-5 22 50957827 rs181658132 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=8;LDAF=0.0037;VT=SNP;AA=A;RSQ=0.988;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.4,-5 0|0:0:-0,-3.49,-5 0|0:0:-0,-3.42,-5 22 50957985 rs117686045 G A 100 PASS ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.9203;VT=SNP;LDAF=0.0177;SNPSOURCE=LOWCOV;AC=36;AVGPOST=0.9961;AF=0.02;ASN_AF=0.06 GT:DS:GL 0|0:0:-0,-2.37,-5 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rs142954199 C T 100 PASS ERATE=0.0005;AVGPOST=0.9936;AN=2184;VT=SNP;RSQ=0.7795;AA=c;LDAF=0.0107;SNPSOURCE=LOWCOV;THETA=0.001;AC=21;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.12,-0.61,-3.14 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.86,-5 0|0:0:-0.24,-0.41,-1.48 22 50958844 rs189794280 G A 100 PASS AA=g;AVGPOST=0.9943;AN=2184;LDAF=0.0046;THETA=0.0005;VT=SNP;AC=5;RSQ=0.4959;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0023;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.13,-0.6,-3.02 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.87,-5 0|0:0:-0.24,-0.4,-1.44 22 50958883 rs183107479 G C 100 PASS LDAF=0.0013;AA=g;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;RSQ=0.7297;AC=2;ERATE=0.0007;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.05,-0.98,-5 0|0:0:-0.23,-0.45,-1.2 0|0:0:-0.38,-0.42,-0.68 0|0:0:-0.03,-1.23,-5 22 50958958 rs112509888 T C 100 PASS THETA=0.0002;AN=2184;AC=84;AVGPOST=0.9935;VT=SNP;RSQ=0.9419;LDAF=0.039;ERATE=0.0008;SNPSOURCE=LOWCOV;AA=t;AF=0.04;AMR_AF=0.01;AFR_AF=0.16 GT:DS:GL 0|0:0:-0.02,-1.46,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.2 0|0:0:-0.03,-1.21,-5 0|0:0:-0.19,-0.45,-2.15 22 50958963 rs188711923 G A 100 PASS THETA=0.0088;ERATE=0.0004;LDAF=0.0009;AA=g;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5367;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.35,-5 0|0:0:-0.46,-0.47,-0.5 0|0:0:-0.13,-0.6,-2.97 0|0:0:-0.03,-1.16,-5 0|0:0:-0.2,-0.45,-2.09 22 50959052 rs5770855 A G 100 PASS ERATE=0.0004;THETA=0.0022;AN=2184;RSQ=0.9836;LDAF=0.1289;AC=282;VT=SNP;AVGPOST=0.9953;AA=A;SNPSOURCE=LOWCOV;AF=0.13;ASN_AF=0.26;AMR_AF=0.16;AFR_AF=0.03;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.12,-0.61,-3.18 0|0:0:-0.07,-0.81,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.48,-0.48,-0.48 22 50959136 rs145012603 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0014;AN=2184;VT=SNP;AC=24;RSQ=0.8941;SNPSOURCE=LOWCOV;AVGPOST=0.9961;LDAF=0.0128;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.16,-0.53,-2.27 0|0:0.45:-0.11,-0.65,-3.8 0|0:0.4:-0.48,-0.48,-0.48 22 50959148 rs112195779 C T 100 PASS ERATE=0.0004;RSQ=0.9682;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AC=60;THETA=0.0003;LDAF=0.0283;AF=0.03;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.11 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0.12,-0.6,-3.85 0|0:0:-0.21,-0.47,-1.31 0|0:0:-0.11,-0.66,-3.85 0|0:0:-0.48,-0.48,-0.48 22 50959334 rs111291284 G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.01,-1.62,-5 22 50959456 . C G 100 PASS LDAF=0.0024;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=5;ERATE=0.0003;RSQ=0.9727;AVGPOST=0.9999;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.87,-5 0|0:0:-0.03,-1.15,-5 22 50959478 rs183399420 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.001;RSQ=0.7551;LDAF=0.0019;AVGPOST=0.9989;THETA=0.0007;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-2.11,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.36,-5 0|0:0:-0.19,-0.45,-2.15 22 50959538 rs56229588 T C 100 PASS AA=T;AN=2184;VT=SNP;RSQ=0.9701;AVGPOST=0.998;AC=41;LDAF=0.0193;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.02;AMR_AF=0.04;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-2.12,-5 0|0:0:-0,-2.59,-5 0|1:1:-2.7,-0,-4.7 0|0:0:-0.06,-0.89,-5 22 50959589 rs188703169 T A 100 PASS AA=T;AN=2184;VT=SNP;RSQ=0.7976;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0,-3.03,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.45,-5 22 50959608 rs131815 C T 100 PASS ERATE=0.0004;AA=C;LDAF=0.1797;AN=2184;AVGPOST=0.9947;VT=SNP;THETA=0.0017;SNPSOURCE=LOWCOV;RSQ=0.9865;AC=391;AF=0.18;ASN_AF=0.18;AMR_AF=0.15;AFR_AF=0.02;EUR_AF=0.29 GT:DS:GL 0|1:1:-3.74,-0,-5 1|1:2:-5,-3.17,-0 0|0:0:-0.01,-1.49,-5 0|0:0:-0.02,-1.44,-5 1|0:1:-5,-0.01,-1.85 22 50959702 rs191627920 C T 100 PASS AA=C;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.97,-5 22 50959765 rs12169007 T C 100 PASS ERATE=0.0004;AVGPOST=0.9936;THETA=0.0047;LDAF=0.0466;AN=2184;AC=107;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9495;AA=t;AF=0.05;AMR_AF=0.02;AFR_AF=0.2 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.32,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.51,-5 0|0:0:-0,-2.89,-5 22 50959768 rs9616862 C T 100 PASS THETA=0.0015;AA=C;RSQ=0.8203;AN=2184;VT=SNP;AVGPOST=0.9392;LDAF=0.3134;SNPSOURCE=LOWCOV;AC=662;ERATE=0.0808;AF=0.3;ASN_AF=0.38;AMR_AF=0.31;AFR_AF=0.21;EUR_AF=0.3 GT:DS:GL 0|1:1:-5,0,-5 1|0:1:-5,0,-5 0|0:0:-0.02,-1.43,-5 0|1:1:-4,-0,-5 0|0:0:-0,-2.79,-5 22 50959773 rs68067061 A ACTC 139 PASS RSQ=0.6552;THETA=0.0004;AN=2184;AC=37;ERATE=0.0025;VT=INDEL;LDAF=0.0255;AVGPOST=0.9769;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:0,-1.5,-23.4 0|0:0:0,-0.3,-4.8 0|0:0.15:0,-0.6,-9.6 0|0:0:0,-0.9,-14.3 0|0:0:0,0,0 22 50959796 rs56228847 A T 100 PASS AN=2184;AC=632;AVGPOST=0.9194;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;LDAF=0.3083;ERATE=0.0383;RSQ=0.7699;AF=0.29;ASN_AF=0.34;AMR_AF=0.26;AFR_AF=0.25;EUR_AF=0.29 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-3.62,-0,-5 0|0:0.05:-0.19,-0.46,-5 1|0:1:-2.34,-0,-5 1|0:1:-5,-0,-3.7 22 50959799 rs62239488 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.7983;THETA=0.0045;AC=532;AVGPOST=0.9271;ERATE=0.0276;SNPSOURCE=LOWCOV;LDAF=0.2588;AF=0.24;ASN_AF=0.32;AMR_AF=0.23;AFR_AF=0.15;EUR_AF=0.25 GT:DS:GL 1|0:1:-5,0,-5 0|1:1:-1.41,-0.02,-5 0|0:0:-0.01,-1.48,-5 0|0:0.3:-0,-1.97,-5 1|0:1:-2.33,-0,-5 22 50959804 rs72384165 ACTC A 205 PASS THETA=0.0015;AN=2184;AC=225;VT=INDEL;AVGPOST=0.8982;LDAF=0.1436;RSQ=0.6442;ERATE=0.0316;AF=0.1;ASN_AF=0.08;AMR_AF=0.12;AFR_AF=0.16;EUR_AF=0.08 GT:DS:GL 1|0:1:-3.6,0,-18.7 0|1:0.7:0,-0.3,-6.6 0|0:0.05:0,0,0 0|0:0.15:0,-0.3,-2.1 0|0:0.3:0,0,0 22 50959845 rs184264534 C T 100 PASS LDAF=0.0041;AA=C;AN=2184;RSQ=0.9045;AC=8;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.0037;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.83,-4.4 0|1:0.95:-1.88,-0.03,-1.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50959857 rs145545292 G A 100 PASS LDAF=0.0024;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;AC=5;RSQ=0.9545;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0023;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.04,-1.01,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50959872 rs118071675 A C 100 PASS RSQ=0.9719;AC=35;AN=2184;THETA=0.0005;LDAF=0.0165;VT=SNP;AA=A;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.72,-5 1|0:1:-3.4,-0,-3.36 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50959881 rs186665642 T G 100 PASS THETA=0.0002;AA=T;AN=2184;VT=SNP;RSQ=0.8803;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.4,-5 0|0:0:-0,-2.89,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50959935 . C T 100 PASS AA=C;RSQ=0.876;AN=2184;VT=SNP;THETA=0.0028;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50959949 . G A 100 PASS AVGPOST=1;LDAF=0.0004;THETA=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960010 rs148874894 C T 100 PASS AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;AC=1;ERATE=0.0003;RSQ=0.7921;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960101 rs131814 G A 100 PASS AN=2184;LDAF=0.637;THETA=0.0005;VT=SNP;AC=1394;AA=A;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.998;AVGPOST=0.9987;AF=0.64;ASN_AF=0.71;AMR_AF=0.57;AFR_AF=0.66;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-3.21,-0 0|0:0:0,-5,-5 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50960125 rs145612205 C T 100 PASS LDAF=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.8499;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960172 . A G 100 PASS THETA=0.0002;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.7831;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960191 rs138105501 C G 100 PASS ERATE=0.0004;LDAF=0.0009;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9499;THETA=0.0007;AC=2;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960197 . T C 100 PASS LDAF=0.0009;RSQ=0.9328;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AVGPOST=0.9999;THETA=0.0003;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960220 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960235 rs142797829 G A 100 PASS AVGPOST=1;LDAF=0.0027;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=6;THETA=0.0005;VT=SNP;RSQ=1;ERATE=0.0003;AF=0.0027;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960270 . G A 100 PASS AVGPOST=1;LDAF=0.0009;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0019;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960302 . G A 100 PASS AA=G;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960316 . T TG 309 PASS THETA=0.0009;ERATE=0.0004;AN=2184;VT=INDEL;RSQ=0.9062;AC=21;AVGPOST=0.9974;LDAF=0.0104;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-0.9,-9.7 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50960426 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0;RSQ=0.05;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960428 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960434 . C G 100 PASS AVGPOST=1;AA=C;AN=2184;RSQ=0.9844;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0006;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960439 rs117383090 G A 100 PASS AVGPOST=1;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960444 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0004;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960445 . G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960479 rs144949865 A C 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960645 . C G 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960682 rs140524 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;RSQ=0.9993;LDAF=0.2087;VT=SNP;AC=457;THETA=0.0006;ERATE=0.0003;AF=0.21;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.22;EUR_AF=0.15 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960694 rs116154263 G C 100 PASS AVGPOST=1;LDAF=0.0027;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=6;VT=SNP;RSQ=1;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960769 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960790 . C A 100 PASS AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.8407;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960791 rs113245089 G A 100 PASS THETA=0.0004;LDAF=0.0103;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9866;VT=SNP;AC=22;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960792 . G A 100 PASS ERATE=0.0004;AVGPOST=1;LDAF=0.0009;RSQ=0.9768;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=2;THETA=0.0003;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960851 . G A 100 PASS THETA=0.0048;AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.88,-5 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960852 . C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.54,-5 0|0:0:-0,-2.39,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960965 rs191377365 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960988 rs80181807 C T 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=c;AC=38;LDAF=0.0174;ERATE=0.0003;RSQ=0.9974;AVGPOST=0.9999;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50960989 . G A 100 PASS AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;THETA=0.001;RSQ=0.8457;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961020 . A T 100 PASS AVGPOST=1;AN=2184;THETA=0.0008;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961058 . C T 100 PASS AA=C;RSQ=0.876;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.86,-5 0|0:0:-0,-2.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961092 . C G 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;THETA=0.0003;RSQ=0.9756;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961134 . G C 100 PASS AVGPOST=1;AA=G;AN=2184;RSQ=0;VT=SNP;THETA=0.0011;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961160 . G A 100 PASS AVGPOST=1;AN=2184;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961169 rs131813 A G 100 PASS LDAF=0.8473;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1853;RSQ=0.9997;ERATE=0.0003;AVGPOST=0.9999;AF=0.85;ASN_AF=0.97;AMR_AF=0.81;AFR_AF=0.88;EUR_AF=0.76 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-5,0 0|0:0:0,-5,-5 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50961173 . G A 100 PASS RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961202 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50961211 . C G 100 PASS AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961365 rs78417868 G A 100 PASS ERATE=0.0013;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=8;AVGPOST=0.9997;VT=SNP;LDAF=0.0038;THETA=0.0012;RSQ=0.9654;AF=0.0037;ASN_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.79,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961373 rs190363409 C T 100 PASS AVGPOST=1;LDAF=0.0027;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;VT=SNP;RSQ=1;ERATE=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.01,-5 0|0:0:-0,-3.62,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961387 . C A 100 PASS AA=C;THETA=0.0004;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0,-2,-5 0|0:0:-0,-2.01,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961418 rs182548610 G T 100 PASS RSQ=0.8331;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0007;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.26,-5 0|0:0:-0,-2.68,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961475 . C T 100 PASS AVGPOST=1;LDAF=0.0009;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;ERATE=0.0006;AC=2;THETA=0.0003;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.01,-1.71,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961503 . C T 100 PASS THETA=0.0009;AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.7,-5 0|0:0:-0,-2.2,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961521 . T C 100 PASS AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.01,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961536 rs9628174 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0441;AC=96;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;RSQ=0.9962;AF=0.04;AMR_AF=0.02;AFR_AF=0.18;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.59,-5 0|0:0:-0,-3.4,-5 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 22 50961614 . G A 100 PASS LDAF=0.0004;THETA=0.0002;AA=G;AN=2184;RSQ=0.8551;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.89,-5 0|0:0:-0,-3.03,-5 22 50961622 rs185004528 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=1;AC=1;THETA=0.0007;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.21,-5 0|0:0:-0,-2.62,-5 22 50961714 rs150429430 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;ERATE=0.0009;VT=SNP;RSQ=1;LDAF=0.0014;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.19,-5 0|0:0:-0,-2.76,-5 22 50961786 rs41282347 C T 100 PASS THETA=0.0009;AA=C;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=44;AVGPOST=0.9989;LDAF=0.0204;ERATE=0.0003;AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-3.15,-5 0|0:0:-0,-2.72,-5 0|0:0:-0,-2.14,-5 0|0:0:-0,-3.05,-5 0|0:0:-0,-1.95,-5 22 50961816 . C T 100 PASS RSQ=0.9181;AN=2184;VT=SNP;AA=c;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.27,-5 0|0:0:-0.01,-1.75,-5 0|0:0:-0.07,-0.84,-3.44 0|0:0:-0.01,-1.63,-5 0|0:0:-0.01,-1.63,-5 22 50961842 rs138882378 T C 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AC=6;VT=SNP;LDAF=0.0028;THETA=0.001;ERATE=0.0003;RSQ=0.9921;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.9,-5 0|0:0:-0.07,-0.82,-3.52 0|0:0:-0.08,-0.79,-3.21 0|0:0:-0.01,-1.72,-5 0|0:0:-0.02,-1.45,-5 22 50961854 rs2782 T C 100 PASS AA=C;AC=1396;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9978;ERATE=0.0003;LDAF=0.6382;RSQ=0.9968;AF=0.64;ASN_AF=0.71;AMR_AF=0.57;AFR_AF=0.66;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-3.4,-0 1|1:2:-5,-0.94,-0.05 0|0:0:-0.01,-1.47,-5 1|1:2:-5,-1.12,-0.03 1|1:2:-5,-1.56,-0.01 22 50961925 rs181091606 T C 100 PASS AVGPOST=1;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.82,-5 0|0:0:-0,-2.76,-5 0|0:0:-0,-3.32,-5 0|0:0:0,-5,-5 22 50961962 rs41282349 C G 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.14,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961968 rs190241660 C T 100 PASS AN=2184;VT=SNP;RSQ=0.8031;AA=c;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.15,-5 0|0:0:-0,-2.75,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50961980 . TCA T 1 PASS AC=47;THETA=0.0004;AN=2184;RSQ=0.5347;VT=INDEL;AVGPOST=0.9607;ERATE=0.006;LDAF=0.0351;AF=0.02;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.02;EUR_AF=0.02 GT:DS:GL 0|0:0:0,0,0 0|0:0:0,-0.9,-15 0|0:0:0,-0.6,-10 0|0:0:0,-0.6,-10 0|0:0:0,-0.6,-10 22 50962009 rs180762319 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.6815;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.39,-5 0|0:0:-0.05,-1,-4.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962057 . G A 100 PASS RSQ=0.9049;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-4,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962065 rs8139305 G A 100 PASS AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0087;RSQ=1;ERATE=0.0003;AC=19;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962078 rs112793292 G T 100 PASS AC=7;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0032;VT=SNP;ERATE=0.001;RSQ=0.9865;AVGPOST=0.9999;THETA=0.0003;AF=0.0032;AMR_AF=0.0028;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962117 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962208 rs12148 T G 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=1402;VT=SNP;LDAF=0.6412;RSQ=0.9998;THETA=0.0012;ERATE=0.0003;AVGPOST=0.9999;AF=0.64;ASN_AF=0.71;AMR_AF=0.57;AFR_AF=0.67;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-5,0 0|0:0:0,-5,-5 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50962230 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962259 rs131811 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.037;VT=SNP;AC=81;RSQ=1;ERATE=0.0003;THETA=0.0003;AF=0.04;AMR_AF=0.07;AFR_AF=0.0041;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962265 . G A 100 PASS LDAF=0.0009;AA=g;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=0.9524;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962381 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962424 rs186248656 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0027;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962463 . C T 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.9546;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0003;AC=3;AVGPOST=0.9999;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962514 rs75485962 G A 100 PASS AC=62;RSQ=0.9926;LDAF=0.0282;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0006;ERATE=0.0003;AVGPOST=0.9995;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.04,-1.02,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962560 rs138294250 A G 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;RSQ=0.8415;AVGPOST=0.9998;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.07,-0.82,-3.47 0|0:0:-0.04,-1.02,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962754 rs112989119 C T 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.07,-0.84,-3.62 0|0:0:-0.07,-0.8,-4.1 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50962782 rs140523 C G 100 PASS ERATE=0.0004;THETA=0.0002;LDAF=0.6381;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9987;AC=1395;VT=SNP;AVGPOST=0.9993;AF=0.64;ASN_AF=0.71;AMR_AF=0.57;AFR_AF=0.65;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-2.55,-0 0|0:0:-0.01,-1.89,-5 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50962906 rs184065629 C A 100 PASS THETA=0.0026;AA=C;AVGPOST=0.9994;RSQ=0.6269;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.07,-0.84,-3.62 0|0:0:-0,-2.15,-5 0|0:0:-0,-3.55,-5 0|0:0:0,-5,-5 22 50962948 rs41281527 G T 100 PASS RSQ=0.9831;THETA=0.0004;AA=G;AN=2184;LDAF=0.0201;AVGPOST=0.999;VT=SNP;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.27,-5 0|0:0:-0,-3.04,-5 1|0:1:-5,0,-5 0|1:1:-5,0,-5 22 50963054 rs117369815 T A 100 PASS LDAF=0.0009;AA=T;AN=2184;VT=SNP;RSQ=0.9304;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AVGPOST=0.9999;THETA=0.0003;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-4.22,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0,-2.11,-5 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.03,-1.13,-5 22 50963073 rs188267742 C T 100 PASS LDAF=0.0027;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;RSQ=0.9531;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.25,-5 0|0:0:-0,-2.23,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0.06,-0.87,-5 22 50963154 rs147335141 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.9206;AC=6;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;LDAF=0.0031;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-4.4,-5 0|0:0:-0.04,-1.06,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.01,-1.89,-5 22 50963218 rs66945635 ACT A 127 PASS ERATE=0.0005;AVGPOST=0.9994;AN=2184;RSQ=0.9765;VT=INDEL;THETA=0.0005;LDAF=0.0113;AC=24;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:0,-1.2,-21.6 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.6,-10.8 0|0:0:0,-0.3,-5.4 22 50963243 rs140988974 G A 100 PASS AC=7;AVGPOST=0.9985;AA=G;AN=2184;VT=SNP;THETA=0.0028;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8365;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.47,-5 0|0:0:-0,-2.77,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.02,-1.39,-5 22 50963324 rs131809 ACCTGCACGACCTACCC A 995 PASS AC=591;AN=2184;ERATE=0.0009;VT=INDEL;LDAF=0.2599;THETA=0.0007;AVGPOST=0.9162;RSQ=0.8607;AF=0.27;ASN_AF=0.46;AMR_AF=0.3;AFR_AF=0.05;EUR_AF=0.25 GT:DS:GL 0|1:1:-13.6,0,-23.2 1|1:1.65:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-22.9 1|0:0.9:0,0,0 22 50963357 rs131808 G C 100 PASS AC=1396;THETA=0.0004;AA=G;AN=2184;LDAF=0.638;RSQ=0.9935;VT=SNP;ERATE=0.0008;AVGPOST=0.9964;SNPSOURCE=LOWCOV;AF=0.64;ASN_AF=0.71;AMR_AF=0.57;AFR_AF=0.65;EUR_AF=0.61 GT:DS:GL 1|1:2:-5,-0.66,-0.11 1|1:2:-5,-1.75,-0.01 0|0:0:-0,-2.02,-5 1|1:2:-5,-0.91,-0.06 1|1:2:-5,-0.69,-0.1 22 50963464 rs6009979 C T 100 PASS ERATE=0.0004;AA=C;LDAF=0.0112;AN=2184;THETA=0.0005;RSQ=0.9864;AVGPOST=0.9996;VT=SNP;AC=24;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0.05,-0.93,-5 0|0:0:-0.03,-1.24,-5 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.01,-1.59,-5 22 50963540 rs131807 G C 100 PASS ERATE=0.0004;RSQ=0.9958;AC=1168;AA=G;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;LDAF=0.5347;AF=0.53;ASN_AF=0.7;AMR_AF=0.52;AFR_AF=0.3;EUR_AF=0.57 GT:DS:GL 1|1:2:-5,-1.79,-0.01 1|1:2:-5,-0.73,-0.09 0|0:0:-0.12,-0.62,-3.13 0|1:1:-4,-0,-5 1|0:1:-0.09,-0.71,-5 22 50963566 rs117290338 C T 100 PASS ERATE=0.0005;AA=C;AC=18;AN=2184;LDAF=0.0109;VT=SNP;AVGPOST=0.9919;SNPSOURCE=LOWCOV;RSQ=0.7345;THETA=0.0003;AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0.19,-0.45,-2.18 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.19,-5 0|0:0:-0.06,-0.91,-5 22 50963697 rs8136381 C T 100 PASS RSQ=0.9902;AA=C;THETA=0.0002;AN=2184;LDAF=0.0503;VT=SNP;AC=110;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.05;AMR_AF=0.02;AFR_AF=0.21 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.36 0|0:0:-0.48,-0.48,-0.48 22 50963905 rs74479613 C T 100 PASS AA=C;THETA=0.0004;AN=2184;RSQ=0.9823;LDAF=0.1299;AC=282;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.995;AF=0.13;ASN_AF=0.25;AMR_AF=0.16;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.05,-0.98,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.48,-0.48,-0.48 22 50963965 rs131806 C G 100 PASS AC=1174;ERATE=0.0013;AA=C;AN=2184;VT=SNP;AVGPOST=0.9913;SNPSOURCE=LOWCOV;LDAF=0.5365;THETA=0.0003;RSQ=0.9862;AF=0.54;ASN_AF=0.7;AMR_AF=0.52;AFR_AF=0.31;EUR_AF=0.56 GT:DS:GL 1|1:2:-5,-0.53,-0.15 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|1:1:-0.36,-0.41,-0.77 1|0:1:-0.48,-0.48,-0.48 22 50963992 rs190706673 C T 100 PASS AVGPOST=0.9921;AA=C;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.4477;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0007;LDAF=0.0055;AF=0.0023;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50964018 rs71774978 C CGCAG 195 PASS AC=112;LDAF=0.0574;RSQ=0.8169;THETA=0.0004;AN=2184;AVGPOST=0.9725;VT=INDEL;ERATE=0.002;AF=0.05;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.18;EUR_AF=0.01 GT:DS:GL 0|0:0:0,-1.2,-18.3 0|0:0.1:0,0,0 0|0:0.05:0,0,0 0|0:0.3:0,0,0 0|0:0:0,0,0 22 50964029 rs145052206 C G 100 PASS LDAF=0.0133;AN=2184;RSQ=0.7554;AVGPOST=0.9917;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=21;ERATE=0.0006;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.23,-0.41,-1.69 0|0:0:-0.18,-0.47,-3.04 22 50964153 rs131805 T C 100 PASS LDAF=0.8476;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AC=1853;ERATE=0.0008;AVGPOST=0.9948;RSQ=0.985;AF=0.85;ASN_AF=0.97;AMR_AF=0.81;AFR_AF=0.87;EUR_AF=0.76 GT:DS:GL 1|1:2:-5,-0.98,-0.05 1|1:2:-2.89,-0.49,-0.17 0|0:0:-0.13,-0.6,-2.17 1|1:2:-5,-1.97,-0 1|1:2:-5,-1.12,-0.03 22 50964236 rs11479 G A 100 PASS ERATE=0.0004;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.1276;AC=278;AVGPOST=0.9978;RSQ=0.9921;AF=0.13;ASN_AF=0.25;AMR_AF=0.16;AFR_AF=0.03;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.08,-0.76,-3.7 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0,-2.87,-5 0|0:0:-0.03,-1.19,-5 22 50964255 rs112723255 C T 100 PASS ERATE=0.0005;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9426;THETA=0.0005;VT=SNP;AA=c;AC=58;AVGPOST=0.9961;LDAF=0.0278;AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.06 GT:DS:GL 0|0:0:-0.01,-1.58,-5 0|0:0:-0.11,-0.64,-2.52 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.31,-5 0|0:0:-0.09,-0.71,-5 22 50964402 rs183160819 G A 100 PASS AA=g;AN=2184;AC=57;AVGPOST=0.9713;VT=SNP;THETA=0.0006;ERATE=0.0016;RSQ=0.6727;SNPSOURCE=LOWCOV;LDAF=0.0356;AF=0.03;AMR_AF=0.02;AFR_AF=0.09;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.35,-0.41,-0.78 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50964446 rs1138404 A T 100 PASS AC=288;AN=2184;VT=SNP;RSQ=0.8694;AVGPOST=0.9589;SNPSOURCE=LOWCOV;ERATE=0.0012;AA=a;LDAF=0.1378;THETA=0.0003;AF=0.13;ASN_AF=0.09;AMR_AF=0.12;AFR_AF=0.28;EUR_AF=0.07 GT:DS:GL 1|0:0.95:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|1:0.95:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50964599 rs148641002 G C 100 PASS AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8273;VT=SNP;ERATE=0.0011;LDAF=0.0225;AC=42;THETA=0.0003;AVGPOST=0.991;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:1:-4.7,-0.03,-1.21 0|1:1:-2.49,-0,-4 22 50964618 rs113802488 C T 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9914;VT=SNP;THETA=0.0027;AA=c;AC=82;RSQ=0.9178;ERATE=0.0007;LDAF=0.0379;AF=0.04;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.15;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.31,-0.43,-0.84 0|0:0:-0.01,-1.65,-5 0|0:0:-0.06,-0.88,-5 22 50964663 . C T 100 PASS LDAF=0.0036;AN=2184;AC=6;RSQ=0.6606;VT=SNP;AA=c;SNPSOURCE=EXOME;AVGPOST=0.9973;ERATE=0.0007;THETA=0.0003;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.25,-5 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.05,-0.93,-5 0|0:0:-0.15,-0.54,-4.1 22 50964862 rs131804 G A 100 PASS AC=1171;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;RSQ=0.9876;AVGPOST=0.9917;VT=SNP;LDAF=0.5355;ERATE=0.0007;AF=0.54;ASN_AF=0.7;AMR_AF=0.52;AFR_AF=0.31;EUR_AF=0.56 GT:DS:GL 1|1:2:-5,-1.7,-0.01 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|1:1:-0.19,-0.46,-2.4 1|0:1:-3.52,-0.47,-0.18 22 50964907 . TGCGG T 125 PASS LDAF=0.0103;AN=2184;VT=INDEL;AVGPOST=0.9855;AC=9;ERATE=0.0011;RSQ=0.4406;THETA=0.001;AF=0.0041;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0.1:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50965102 rs8141558 C T 100 PASS ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9991;AC=75;RSQ=0.9887;LDAF=0.0345;AF=0.03;AMR_AF=0.01;AFR_AF=0.14 GT:DS:GL 0|0:0:-0.07,-0.84,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.13,-0.6,-2.17 0|0:0:-0.02,-1.36,-5 0|0:0:-0.03,-1.13,-5 22 50965416 rs73891271 C T 100 PASS THETA=0.0015;AA=C;RSQ=0.9141;AVGPOST=0.9994;AN=2184;AC=6;VT=SNP;ERATE=0.0008;LDAF=0.003;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.21,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0,-2.29,-5 0|0:0:-0,-3.8,-5 22 50965559 . A T 100 PASS AN=2184;VT=SNP;AA=A;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.02,-1.39,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50965624 . C T 100 PASS RSQ=0.9313;AA=C;AN=2184;LDAF=0.0015;VT=SNP;ERATE=0.001;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=3;THETA=0.0003;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50965724 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50965833 rs116736712 G T 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;AC=13;VT=SNP;LDAF=0.0059;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.5,-5 0|0:0:-0.13,-0.61,-2.22 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50966002 rs187092527 A G 100 PASS SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;RSQ=0.7819;AA=A;LDAF=0.0006;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50966041 . C T 100 PASS AVGPOST=1;AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50966051 . C T 100 PASS AVGPOST=1;LDAF=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50966173 . G A 100 PASS AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50966184 rs7289374 A G 100 PASS AVGPOST=1;THETA=0.0002;LDAF=0.0325;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9993;VT=SNP;AA=A;AC=71;ERATE=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.14 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.34,-5 0|0:0:-0,-4.22,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50966352 rs114574956 C T 100 PASS ERATE=0.0004;AA=C;LDAF=0.0288;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=63;RSQ=0.9874;THETA=0.0003;AVGPOST=0.9992;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.7,-3.44 0|0:0:-0,-2.81,-5 0|0:0:-0,-4.4,-5 22 50966375 rs191951627 T C 100 PASS ERATE=0.0004;LDAF=0.0009;RSQ=0.5697;AA=T;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.07,-0.86,-5 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0,-2.01,-5 0|0:0:-0,-2.85,-5 22 50966431 rs184299570 A G 100 PASS AN=2184;VT=SNP;AA=A;RSQ=0.6679;LDAF=0.0029;ERATE=0.0016;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9978;THETA=0.0003;AF=0.0018;AFR_AF=0.002;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0.08,-0.75,-3.92 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.03,-1.2,-5 0|0:0:-0.02,-1.39,-5 22 50966504 rs187891307 C T 100 PASS AA=C;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.0007;RSQ=0.6963;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.07,-0.81,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0.48,-0.48,-0.48 22 50966545 rs131802 A G 100 PASS AN=2184;AVGPOST=0.9967;VT=SNP;THETA=0.0011;AA=A;LDAF=0.1716;SNPSOURCE=LOWCOV;AC=375;RSQ=0.9903;ERATE=0.0006;AF=0.17;ASN_AF=0.25;AMR_AF=0.23;AFR_AF=0.06;EUR_AF=0.16 GT:DS:GL 0|0:0:-0.01,-1.75,-5 0|0:0:-0.13,-0.61,-2.32 0|0:0:-0.04,-1.04,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.48,-0.48,-0.48 22 50966591 rs193004670 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.3893;LDAF=0.0019;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0,-2.82,-5 0|0:0:-0.18,-0.47,-3.08 22 50966634 rs131801 G T 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=1206;SNPSOURCE=LOWCOV;LDAF=0.5513;ERATE=0.0006;AVGPOST=0.9974;RSQ=0.9962;AF=0.55;ASN_AF=0.71;AMR_AF=0.53;AFR_AF=0.3;EUR_AF=0.6 GT:DS:GL 1|1:2:-5,-2.13,-0 1|1:2:-5,-1.49,-0.01 0|0:0:-0.02,-1.42,-5 1|1:2:-5,-1.44,-0.02 1|1:2:-5,-1.19,-0.03 22 50966685 rs117675268 C T 100 PASS LDAF=0.0133;AA=C;THETA=0.0004;RSQ=0.9435;AN=2184;AVGPOST=0.9979;VT=SNP;AC=31;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.04;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.6,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0.02,-1.41,-5 22 50966691 rs151169209 C T 100 PASS AA=C;AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.942;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.18,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.03,-1.13,-5 0|0:0:-0,-1.95,-5 22 50966728 rs185766396 C T 100 PASS AA=C;AN=2184;AC=8;RSQ=0.9496;VT=SNP;LDAF=0.0039;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.7,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.07,-0.85,-4.22 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.01,-5 22 50966773 rs77427356 C A 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0287;SNPSOURCE=LOWCOV;AC=63;ERATE=0.0003;RSQ=0.998;AVGPOST=0.9999;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-4.7,-5 22 50966908 rs140329664 C G 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50966914 rs470119 T C 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.5549;AC=1213;AF=0.56;ASN_AF=0.71;AMR_AF=0.53;AFR_AF=0.32;EUR_AF=0.6 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-5,0 0|0:0:0,-5,-5 1|1:2:-5,-5,0 1|1:2:-5,-5,0 22 50966932 . G A 100 PASS AVGPOST=1;AA=g;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;LDAF=0.0014;THETA=0.0007;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967020 rs188802138 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967024 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;RSQ=0;VT=SNP;LDAF=0;THETA=0.0006;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967255 rs115323481 G C 100 PASS LDAF=0.0086;AC=18;THETA=0.0014;AA=G;AN=2184;RSQ=0.9575;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-3.24,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.03,-1.11,-4.7 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2.16,-5 22 50967269 rs131800 A G 100 PASS THETA=0.0009;ERATE=0.0014;RSQ=0.8584;AA=G;AN=2184;LDAF=0.967;VT=SNP;AC=2120;SNPSOURCE=LOWCOV;AVGPOST=0.9887;AF=0.97;ASN_AF=1;AMR_AF=0.95;AFR_AF=1;EUR_AF=0.94 GT:DS:GL 1|1:2:-5,-2.97,-0 1|1:2:-5,-0.97,-0.05 1|1:1.9:-5,-1.01,-0.04 1|1:2:-5,-1.53,-0.01 1|1:2:-5,-1.02,-0.04 22 50967305 rs192022190 G C 100 PASS RSQ=0.7493;AA=G;AN=2184;THETA=0.0008;AVGPOST=0.999;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.08,-5 0|0:0:-0.01,-1.48,-5 0|0:0:-0.07,-0.81,-4.1 0|0:0:-0.06,-0.9,-5 0|0:0:-0.04,-1.09,-5 22 50967538 rs116860087 C G 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0093;AC=20;RSQ=0.9774;VT=SNP;THETA=0.0006;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;ASN_AF=0.03 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.3,-5 0|0:0:-0,-2.97,-5 0|0:0:0,-5,-5 22 50967540 . G A 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0027;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4.1,-5 0|0:0:0,-5,-5 0|0:0:-0,-3.06,-5 0|0:0:-0,-3.13,-5 0|0:0:0,-5,-5 22 50967666 . C G 100 PASS AVGPOST=0.9986;AA=C;RSQ=0.6628;AN=2184;LDAF=0.0018;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0015;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.0035;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 1|0:0.65:-3.09,-0,-4.7 0|0:0:-0.05,-0.98,-4.1 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967740 . C T 100 PASS RSQ=0.8998;AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0011;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.06,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967801 . C T 100 PASS AVGPOST=1;AA=C;AN=2184;RSQ=0;THETA=0.0005;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.58,-5 0|0:0:-0,-2.13,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967905 rs184433943 G A 100 PASS AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=1;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.02,-1.45,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967912 rs74624637 C T 100 PASS AC=17;RSQ=0.9762;AA=C;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0081;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.94,-5 0|0:0:-0.02,-1.46,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967913 rs188531143 C T 100 PASS AA=C;RSQ=0.8778;LDAF=0.0016;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.0003;AVGPOST=0.9995;AC=3;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.02,-1.47,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50967935 rs34375653 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=40;VT=SNP;THETA=0.0011;RSQ=0.9943;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0184;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:0,-5,-5 0|0:0.05:-0.71,-0.09,-5 0|0:0:-0.03,-1.24,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50968156 rs181234837 G T 100 PASS THETA=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.4419;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0,-2.7,-5 0|0:0:-0,-2.66,-5 22 50968184 . C A 100 PASS AA=C;AVGPOST=0.9966;THETA=0.0004;AN=2184;RSQ=0.5982;ERATE=0.0009;VT=SNP;SNPSOURCE=EXOME;AC=5;LDAF=0.0031;AF=0.0023;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.03,-1.25,-5 0|0:0.3:-2.87,-0.49,-0.17 0|0:0:-0.19,-0.45,-2.16 0|0:0:-0,-2.46,-5 0|0:0:-0.02,-1.41,-5 22 50968265 rs115930767 T G 100 PASS ERATE=0.0004;AA=T;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9989;RSQ=0.9853;SNPSOURCE=LOWCOV;AC=71;LDAF=0.0327;AF=0.03;AMR_AF=0.01;AFR_AF=0.14 GT:DS:GL 0|0:0:-0.18,-0.46,-2.76 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.17,-0.5,-2.45 0|0:0:-0.02,-1.4,-5 0|0:0:-0,-2.7,-5 22 50968295 rs146520958 C A 100 PASS ERATE=0.0005;LDAF=0.0036;AA=C;AVGPOST=0.9983;AN=2184;AC=6;THETA=0.0005;VT=SNP;RSQ=0.7973;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.29,-0.38,-1.17 0|0:0:-0.07,-0.83,-4.4 0|0:0:-0.12,-0.61,-3.12 0|0:0:-0.08,-0.75,-5 0|0:0:-0,-2.59,-5 22 50968558 rs141083282 C T 100 PASS AA=C;ERATE=0.0023;THETA=0.0004;AN=2184;AVGPOST=0.9523;LDAF=0.0579;VT=SNP;AC=95;SNPSOURCE=LOWCOV;RSQ=0.6493;AF=0.04;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.13;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.2:-0.48,-0.48,-0.48 0|0:0.2:-0.48,-0.48,-0.48 22 50968655 rs185768912 G A 100 PASS THETA=0.0009;LDAF=0.0133;ERATE=0.0013;AA=G;AN=2184;AC=13;VT=SNP;RSQ=0.4488;SNPSOURCE=LOWCOV;AVGPOST=0.9816;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0.05:-0.48,-0.48,-0.48 0|0:0.05:-0.27,-0.43,-1.04 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.34 0|0:0:-0.18,-0.47,-3.09 22 50968826 rs28362564 C CAG 144 PASS RSQ=0.8037;AN=2184;ERATE=0.0009;VT=INDEL;THETA=0.0012;AVGPOST=0.9622;AC=158;LDAF=0.0769;AF=0.07;ASN_AF=0.06;AMR_AF=0.08;AFR_AF=0.08;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-0.9,-10.8 0|0:0.05:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-3.6 0|0:0:0,0,0 22 50969116 . C A 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0038;AVGPOST=0.9996;VT=SNP;RSQ=0.8177;SNPSOURCE=EXOME;LDAF=0.0011;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0,-3.36,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.62,-5 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 22 50969312 . C T 100 PASS ERATE=0.0004;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=0.5837;AVGPOST=0.9984;AC=2;LDAF=0.0017;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.14,-0.56,-3.49 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.44,-0.46,-0.54 0|0:0:-0.01,-1.93,-5 0|0:0:-0.01,-1.76,-5 22 50969336 . C T 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0025;AC=1;RSQ=0.3358;AVGPOST=0.9958;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.56,-5 0|0:0:-0.01,-1.62,-5 22 50969352 . G T 100 PASS RSQ=0.5697;THETA=0.0002;AA=G;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.9976;SNPSOURCE=EXOME;LDAF=0.0025;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.97,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.45,-0.46,-0.53 0|0:0:-0,-3.25,-5 0|0:0:-0.01,-1.82,-5 22 50969450 . C T 100 PASS AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;LDAF=0.0026;RSQ=0.8923;SNPSOURCE=EXOME;AC=5;THETA=0.0007;ERATE=0.0003;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-1.94,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.01,-1.91,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.79,-5 22 50969647 rs139023197 C G 100 PASS LDAF=0.0191;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.999;VT=SNP;AC=41;RSQ=0.9809;ERATE=0.0003;THETA=0.0003;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.41,-5 1|0:1:-5,0,-5 0|1:1:-5,0,-5 22 50969673 rs148926442 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9996;LDAF=0.001;VT=SNP;RSQ=0.8078;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.51,-5 0|0:0:-0,-4.7,-5 0|0:0:0,-5,-5 22 50969752 rs2334102 G C 100 PASS ERATE=0.0004;AC=30;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0147;RSQ=0.9403;AVGPOST=0.9978;AF=0.01;AMR_AF=0.08;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-3.44,-5 0|0:0:-0,-2.39,-5 0|0:0:-0,-2.4,-5 0|0:0:-0,-2.13,-5 0|0:0:0,-5,-5 22 50969765 rs115468469 G A 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.954;AC=16;VT=SNP;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0075;AF=0.01;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.42,-5 0|0:0:-0,-3.03,-5 0|0:0:-0,-2.37,-5 0|0:0:-0,-2.08,-5 0|0:0:-0,-4.7,-5 22 50969905 rs143735255 C T 100 PASS AA=C;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;RSQ=0.7073;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.02,-1.25,-5 0|0:0:-0.05,-0.99,-4.22 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-3.15,-5 22 50970028 rs148109519 C T 100 PASS LDAF=0.0033;AA=C;AN=2184;RSQ=0.3734;AVGPOST=0.9952;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=4;THETA=0.0043;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.18,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.43,-2.43 22 50970068 rs141953471 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8991;THETA=0.0005;VT=SNP;AC=58;ERATE=0.0006;AVGPOST=0.9932;LDAF=0.0278;AF=0.03;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.08,-0.78,-5 0|0:0:-0.22,-0.46,-1.34 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.94 22 50970219 rs55869504 T C 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;LDAF=0.0645;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=141;RSQ=0.9711;AVGPOST=0.9948;AF=0.06;AMR_AF=0.03;AFR_AF=0.26 GT:DS:GL 0|0:0:-0.01,-1.55,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.09,-0.72,-4.7 0|0:0:-0.19,-0.46,-2.17 22 50970231 rs147291866 G C 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.001;LDAF=0.0292;THETA=0.0028;RSQ=0.8483;AC=60;AVGPOST=0.9897;AF=0.03;ASN_AF=0.0017;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.14,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.27 1|0:1:-2.07,-0.01,-2.03 0|1:1.05:-2.62,-0.45,-0.19 22 50970354 . C A 100 PASS AA=C;LDAF=0.0078;AN=2184;AC=13;RSQ=0.579;AVGPOST=0.9917;VT=SNP;SNPSOURCE=EXOME;THETA=0.0043;ERATE=0.0006;AF=0.01;ASN_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.04,-1.08,-4.7 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.06,-0.91,-5 0|0:0:-0.11,-0.64,-4.7 22 50970516 rs12169889 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=84;THETA=0.0008;VT=SNP;ERATE=0.001;LDAF=0.0395;AVGPOST=0.9915;RSQ=0.9104;AF=0.04;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.16 GT:DS:GL 0|0:0:-0.08,-0.76,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.48,-0.48,-0.48 22 50970714 rs117188300 G T 100 PASS AA=G;AN=2184;VT=SNP;AC=41;ERATE=0.0008;AVGPOST=0.9954;LDAF=0.0196;SNPSOURCE=LOWCOV;RSQ=0.9029;THETA=0.0003;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.07,-0.84,-5 1|0:1:-5,0,-5 0|1:1:-5,-0.65,-0.11 22 50970803 rs7292735 A G 100 PASS THETA=0.0009;ERATE=0.0004;AVGPOST=0.9945;RSQ=0.9761;AN=2184;LDAF=0.0748;VT=SNP;AA=A;AC=161;SNPSOURCE=LOWCOV;AF=0.07;AMR_AF=0.03;AFR_AF=0.3 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0.13,-0.61,-2.34 0|0:0:-0.45,-0.46,-0.53 0|0:0:-0.1,-0.71,-4.7 0|0:0:-0.03,-1.12,-5 22 50970808 rs139354714 C T 100 PASS AC=7;AA=C;AN=2184;RSQ=0.6204;LDAF=0.0043;VT=SNP;AVGPOST=0.9959;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.27,-0.44,-1.02 0|0:0:-0.08,-0.75,-5 0|0:0:-0.03,-1.14,-5 22 50970937 rs181973588 A G 100 PASS ERATE=0.0005;AVGPOST=0.9985;AN=2184;AC=8;VT=SNP;THETA=0.0018;AA=A;LDAF=0.0039;SNPSOURCE=LOWCOV;RSQ=0.8377;AF=0.0037;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.31,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.04,-1.08,-5 22 50970996 rs74795169 C T 100 PASS AC=72;ERATE=0.0005;AA=C;AVGPOST=0.9983;AN=2184;VT=SNP;RSQ=0.9777;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0331;AF=0.03;AMR_AF=0.01;AFR_AF=0.14 GT:DS:GL 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.45,-2.2 0|0:0:-0.2,-0.45,-2.13 0|0:0:-0.06,-0.92,-5 0|0:0:-0.19,-0.46,-2.16 22 50971037 rs76284775 C T 100 PASS LDAF=0.0036;AA=C;AN=2184;VT=SNP;AVGPOST=0.9969;ERATE=0.0008;AC=5;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.6481;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.19,-0.45,-2.15 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.48,-0.48,-0.48 22 50971047 rs361725 T C 100 PASS LDAF=0.5223;AA=T;AN=2184;AVGPOST=0.9351;VT=SNP;THETA=0.0006;ERATE=0.0045;AC=1165;SNPSOURCE=LOWCOV;RSQ=0.9057;AF=0.53;ASN_AF=0.66;AMR_AF=0.56;AFR_AF=0.26;EUR_AF=0.6 GT:DS:GL 1|1:1.8:-0.48,-0.48,-0.48 1|1:1.75:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.13 0|1:1:-0.19,-0.46,-2.39 1|0:1:-0.48,-0.48,-0.48 22 50971197 rs187333359 G A 100 PASS ERATE=0.0004;RSQ=0.5934;LDAF=0.0021;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0,-3.36,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0,-3.85,-5 22 50971204 rs143275993 A G 100 PASS THETA=0.0004;AN=2184;LDAF=0.0018;RSQ=0.4747;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AVGPOST=0.9974;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-2.31,-5 0|0:0:-0.18,-0.48,-2.22 0|0:0:-0,-4.7,-5 22 50971266 rs140522 T C 100 PASS THETA=0.0015;AA=T;AN=2184;AC=1362;ERATE=0.0009;RSQ=0.993;LDAF=0.6226;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9961;AF=0.62;ASN_AF=0.71;AMR_AF=0.62;AFR_AF=0.47;EUR_AF=0.66 GT:DS:GL 1|1:2:-5,-1.16,-0.03 1|1:2:-5,-2.48,-0 0|0:0:-0,-2.86,-5 1|1:2:-5,-1.46,-0.02 1|1:2:-5,-3.12,-0 22 50971410 . TA T 161 PASS AC=140;THETA=0.0004;AN=2184;AVGPOST=0.9895;VT=INDEL;ERATE=0.001;LDAF=0.0685;RSQ=0.9356;AF=0.06;AMR_AF=0.05;AFR_AF=0.08;EUR_AF=0.11 GT:DS:GL 0|0:0:0,-1.2,-14.4 0|0:0:0,-0.6,-7.2 0|0:0:0,-0.9,-10.9 0|0:0:0,-0.3,-3.6 0|0:0:0,-0.6,-7.3 22 50971506 rs191157784 G A 100 PASS ERATE=0.0005;THETA=0.0023;RSQ=0.6685;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.1,-0.68,-5 0|0:0:-0.21,-0.46,-1.36 0|0:0:-0.12,-0.61,-3.1 0|0:0:-0.03,-1.18,-5 0|0:0:-0.19,-0.46,-2.16 22 50971509 rs131798 T G 100 PASS AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;RSQ=0.9948;THETA=0.0006;LDAF=0.8067;SNPSOURCE=LOWCOV;AC=1765;ERATE=0.0006;AF=0.81;ASN_AF=0.96;AMR_AF=0.8;AFR_AF=0.7;EUR_AF=0.77 GT:DS:GL 1|1:2:-5,-0.69,-0.1 1|1:2:-5,-0.71,-0.09 0|0:0:-0.12,-0.62,-3.15 1|1:2:-5,-1.17,-0.03 1|1:2:-3.21,-0.49,-0.17 22 50971555 rs183037595 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5706;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.18,-0.47,-2.81 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.98,-5 0|0:0:-0.09,-0.75,-5 0|0:0:-0.01,-1.62,-5 22 50971643 . A AG 79 PASS AC=414;THETA=0.0004;AN=2184;VT=INDEL;AVGPOST=0.7432;LDAF=0.259;RSQ=0.4465;ERATE=0.0693;AF=0.19;ASN_AF=0.21;AMR_AF=0.19;AFR_AF=0.16;EUR_AF=0.19 GT:DS:GL 0|0:0.8:-0.5,-0.2,0 0|0:0.85:0,0,0 0|0:0:0,-0.9,-12.6 0|0:0.1:0,0,0 1|0:0.6:0,-0.3,-4.2 22 50971702 . 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AC=17;AA=G;AN=2184;VT=SNP;RSQ=0.9594;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AVGPOST=0.9992;LDAF=0.0082;AF=0.01;AMR_AF=0.0028;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0,-3.44,-5 22 50973298 rs140460548 C T 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=20;THETA=0.0005;VT=SNP;LDAF=0.0085;SNPSOURCE=LOWCOV;AVGPOST=0.9978;RSQ=0.9029;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.78,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.18,-0.46,-3.04 22 50973337 rs189739013 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0119;RSQ=0.6974;ERATE=0.0008;AVGPOST=0.9916;SNPSOURCE=LOWCOV;AC=19;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.48,-0.48,-0.48 0|1:0.75:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.69,-4.1 0|0:0.05:-0.48,-0.48,-0.48 22 50973441 rs150393735 C T 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;RSQ=0.8179;VT=SNP;AA=c;AVGPOST=0.9991;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.09,-0.71,-4.7 0|0:0:-0.2,-0.44,-2.07 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.45,-2.1 22 50973446 rs138231499 G A 100 PASS AVGPOST=0.9966;AA=G;AN=2184;AC=16;THETA=0.0005;LDAF=0.0079;VT=SNP;RSQ=0.8195;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.04,-1.01,-5 0|0:0:-0.14,-0.56,-3.4 0|0:0:-0.21,-0.43,-1.93 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.15 22 50973456 rs142385506 T C 100 PASS AA=T;AN=2184;THETA=0.0005;VT=SNP;AC=14;RSQ=0.7724;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9949;LDAF=0.0077;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.08,-0.78,-5 0|0:0:-0.21,-0.43,-1.91 0|0:0:-0.2,-0.45,-2.09 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.15 22 50973779 rs73172252 G A 100 PASS AVGPOST=0.9933;AA=g;AN=2184;ERATE=0.0009;VT=SNP;AC=620;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.9872;LDAF=0.2836;AF=0.28;ASN_AF=0.26;AMR_AF=0.23;AFR_AF=0.55;EUR_AF=0.15 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.08,-0.77,-4.7 0|0:0:-0.01,-1.79,-5 1|0:1:-0.11,-0.66,-4.7 0|1:0.85:-0.19,-0.45,-2.15 22 50973800 rs76814129 C G 100 PASS AC=73;THETA=0.0004;AN=2184;VT=SNP;AA=c;LDAF=0.0339;RSQ=0.9809;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.03;AMR_AF=0.01;AFR_AF=0.14 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.2,-0.45,-2.1 22 50973817 rs78007348 C T 100 PASS AC=160;AN=2184;VT=SNP;AA=c;THETA=0.0012;AVGPOST=0.9938;SNPSOURCE=LOWCOV;RSQ=0.9637;ERATE=0.0007;LDAF=0.0741;AF=0.07;ASN_AF=0.1;AMR_AF=0.09;AFR_AF=0.02;EUR_AF=0.08 GT:DS:GL 1|0:1:-5,-0.89,-0.06 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.12,-0.62,-4 0|1:1:-5,-0.68,-0.1 0|0:0:-0.2,-0.44,-1.99 22 50973866 rs180815735 A G 100 PASS ERATE=0.0004;AN=2184;RSQ=0.5765;AVGPOST=0.9979;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AA=a;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.81,-5 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.04,-1.09,-5 22 50973884 rs76997456 G A 100 PASS RSQ=0.9695;AA=g;AN=2184;LDAF=0.0178;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AC=39;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.01,-1.58,-5 0|0:0:-0,-2.8,-5 1|0:1:-0.28,-0.4,-1.09 0|1:0.85:-0.07,-0.85,-5 22 50973913 rs146782584 C T 100 PASS ERATE=0.0004;AN=2184;THETA=0.0008;LDAF=0.001;VT=SNP;AA=c;RSQ=0.5025;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-2.52,-5 0|0:0:-0,-4.22,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.83,-5 22 50974016 rs12165844 T C 100 PASS ERATE=0.0004;LDAF=0.0808;AA=T;AN=2184;RSQ=0.9939;VT=SNP;AC=177;SNPSOURCE=LOWCOV;AVGPOST=0.9987;THETA=0.0003;AF=0.08;AMR_AF=0.03;AFR_AF=0.34 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0.02,-1.28,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.04,-1.08,-5 22 50974054 rs185506990 G A 100 PASS AVGPOST=0.9963;AA=G;AN=2184;RSQ=0.6136;AC=6;THETA=0.0005;VT=SNP;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.35:-0.19,-0.47,-2.1 0|0:0:-0.48,-0.48,-0.48 22 50974100 rs4824129 A G 100 PASS ERATE=0.0014;RSQ=0.9632;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9863;VT=SNP;AC=1819;LDAF=0.8309;SNPSOURCE=LOWCOV;AF=0.83;ASN_AF=0.96;AMR_AF=0.8;AFR_AF=0.82;EUR_AF=0.76 GT:DS:GL 1|1:2:-5,-1.61,-0.01 1|1:2:-4.7,-0.66,-0.11 0|0:0:-0.12,-0.62,-4 1|1:2:-2.77,-0.45,-0.19 1|1:1.95:-0.48,-0.48,-0.48 22 50974141 rs12165614 A G 100 PASS ERATE=0.0014;AVGPOST=0.9927;LDAF=0.0815;AA=G;AN=2184;RSQ=0.9674;THETA=0.0008;VT=SNP;AC=179;SNPSOURCE=LOWCOV;AF=0.08;AMR_AF=0.03;AFR_AF=0.34;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.07,-0.81,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 22 50974259 rs143835075 G A 100 PASS THETA=0.0004;AA=G;AN=2184;ERATE=0.0009;AC=6;VT=SNP;RSQ=0.5591;SNPSOURCE=LOWCOV;LDAF=0.0048;AVGPOST=0.9951;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.18 0|0:0.05:-0.48,-0.48,-0.48 22 50974301 rs12169323 C G 100 PASS ERATE=0.0005;THETA=0.0004;AN=2184;RSQ=0.9944;VT=SNP;AA=c;AC=177;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.0811;AF=0.08;AMR_AF=0.03;AFR_AF=0.34 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.17,-0.52,-1.78 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.18,-0.47,-2.44 0|0:0.05:-0.11,-0.64,-4.1 22 50974399 rs77959073 C T 100 PASS AC=7;ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;RSQ=0.8176;LDAF=0.0043;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.0032;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.27,-5 0|0:0:-0.02,-1.43,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0,-2.8,-5 22 50974438 rs62239506 G A 100 PASS THETA=0.0009;AA=G;AN=2184;VT=SNP;AC=141;LDAF=0.0681;SNPSOURCE=LOWCOV;RSQ=0.9198;ERATE=0.0007;AVGPOST=0.9866;AF=0.06;AMR_AF=0.07;AFR_AF=0.04;EUR_AF=0.13 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|1:1.2:-2.15,-0.02,-1.48 0|0:0:-0.04,-1.06,-5 0|0:0:-0.06,-0.91,-5 1|0:1:-2.5,-0.02,-1.37 22 50974501 rs6009980 T C 100 PASS LDAF=0.1586;AC=347;THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9871;VT=SNP;ERATE=0.0019;SNPSOURCE=LOWCOV;RSQ=0.9623;AF=0.16;ASN_AF=0.26;AMR_AF=0.18;AFR_AF=0.11;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.23,-0.41,-1.62 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.18,-0.46,-3.03 22 50974535 rs131790 G A 100 PASS THETA=0.0002;AA=G;AN=2184;VT=SNP;ERATE=0.001;LDAF=0.3402;AC=744;AVGPOST=0.9918;SNPSOURCE=LOWCOV;RSQ=0.9862;AF=0.34;ASN_AF=0.47;AMR_AF=0.4;AFR_AF=0.09;EUR_AF=0.38 GT:DS:GL 0|1:0.95:-0.18,-0.48,-2.47 1|1:2:-5,-0.6,-0.12 0|0:0.05:-0.12,-0.63,-4.1 0|0:0:-0.18,-0.48,-2.19 1|0:1.05:-3.47,-0.47,-0.18 22 50974620 rs9628207 A C 100 PASS ERATE=0.0004;LDAF=0.0803;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.998;AA=A;AC=177;RSQ=0.9922;SNPSOURCE=LOWCOV;AF=0.08;AMR_AF=0.03;AFR_AF=0.34 GT:DS:GL 0|0:0:-0.11,-0.65,-4.22 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.18 0|0:0:-0.03,-1.19,-5 0|0:0:-0.48,-0.48,-0.48 22 50974642 rs76113451 C T 100 PASS AA=C;AN=2184;RSQ=0.9619;AVGPOST=0.9981;LDAF=0.0205;VT=SNP;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.01,-1.77,-5 0|0:0.2:-0.1,-0.67,-4 0|0:0:-0.02,-1.35,-5 22 50974669 rs181943350 C T 100 PASS RSQ=0.7977;LDAF=0.0013;AN=2184;VT=SNP;AVGPOST=0.9993;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.51,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0,-2.59,-5 22 50974964 rs185898179 G A 100 PASS RSQ=0.8292;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9996;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.05,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0,-2.61,-5 22 50975038 rs79326089 G A 100 PASS THETA=0.0002;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.964;LDAF=0.0122;SNPSOURCE=LOWCOV;AC=27;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0,-2.34,-5 0|0:0:-0,-2.55,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.04,-1.11,-5 22 50975230 rs58661495 CT C 291 PASS ERATE=0.0004;AN=2184;AVGPOST=0.9944;VT=INDEL;AC=259;THETA=0.0005;RSQ=0.9816;LDAF=0.1193;AF=0.12;ASN_AF=0.26;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.07 GT:DS:GL 0|0:0:0,-0.6,-7.6 0|0:0:0,-0.9,-11.3 0|0:0:0,-0.6,-7.5 0|0:0:0,-0.9,-11.3 0|0:0:0,-0.3,-3.8 22 50975258 rs190715295 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;RSQ=0.6145;LDAF=0.0012;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.08,-0.76,-5 0|0:0:-0.02,-1.46,-5 0|0:0:-0.06,-0.89,-5 22 50975269 rs78983802 A T 100 PASS ERATE=0.0004;LDAF=0.0808;THETA=0.0004;AN=2184;VT=SNP;AA=A;AVGPOST=0.9989;AC=177;RSQ=0.9952;SNPSOURCE=LOWCOV;AF=0.08;AMR_AF=0.03;AFR_AF=0.34 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.04,-1.07,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.03,-1.13,-5 22 50975288 rs79413681 A G 100 PASS ERATE=0.0004;LDAF=0.081;AN=2184;THETA=0.0031;VT=SNP;RSQ=0.9943;AA=A;AC=177;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AF=0.08;AMR_AF=0.03;AFR_AF=0.34 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.37,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.03,-1.13,-5 22 50975401 rs111623667 T C 100 PASS AC=17;AA=T;AN=2184;VT=SNP;LDAF=0.0085;SNPSOURCE=LOWCOV;RSQ=0.9013;ERATE=0.0006;THETA=0.0003;AVGPOST=0.9982;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.48,-0.48,-0.48 22 50975566 rs142414190 T G 100 PASS LDAF=0.0021;AA=T;AN=2184;RSQ=0.4261;AVGPOST=0.9967;VT=SNP;THETA=0.0006;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0,-2.03,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.12,-0.63,-3.92 22 50975601 rs5770863 A G 100 PASS AA=G;AN=2184;AC=513;AVGPOST=0.9878;RSQ=0.9767;VT=SNP;ERATE=0.0026;LDAF=0.2338;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.23;ASN_AF=0.26;AMR_AF=0.2;AFR_AF=0.43;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.17,-0.48,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0,-2.4,-5 0|0:0:-0.1,-0.67,-3.92 0|0:0:-0.12,-0.63,-4 22 50975645 rs5770864 G A 100 PASS AVGPOST=0.9963;LDAF=0.1915;AN=2184;AC=418;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;RSQ=0.9908;ERATE=0.0007;AF=0.19;ASN_AF=0.26;AMR_AF=0.19;AFR_AF=0.25;EUR_AF=0.11 GT:DS:GL 0|0:0:-0,-2.03,-5 0|1:1:-4.7,-0,-4.7 0|0:0:-0,-2.3,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0.2,-0.45,-2.09 22 50975686 rs5770865 A T 100 PASS ERATE=0.0004;RSQ=0.9931;AA=T;AN=2184;VT=SNP;AC=524;SNPSOURCE=LOWCOV;THETA=0.0016;AVGPOST=0.9961;LDAF=0.2396;AF=0.24;ASN_AF=0.26;AMR_AF=0.21;AFR_AF=0.45;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0,-2.59,-5 0|0:0:-0.02,-1.45,-5 0|0:0:-0.2,-0.45,-2.04 22 50975720 rs182823047 G A 100 PASS AA=G;AN=2184;RSQ=0.7702;VT=SNP;THETA=0.0018;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AC=2;LDAF=0.0008;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0.04,-1.04,-5 0|0:0:-0,-2.33,-5 0|0:0:-0.02,-1.47,-5 0|0:0:-0.02,-1.32,-5 22 50975753 rs131789 G A 100 PASS AN=2184;LDAF=0.3364;VT=SNP;AA=A;THETA=0.0086;RSQ=0.988;SNPSOURCE=LOWCOV;AC=735;ERATE=0.0006;AVGPOST=0.9926;AF=0.34;ASN_AF=0.47;AMR_AF=0.4;AFR_AF=0.08;EUR_AF=0.38 GT:DS:GL 0|1:1:-5,0,-5 1|1:2:-5,-2.5,-0 0|0:0:-0,-2.05,-5 0|0:0:-0.1,-0.68,-4.4 1|0:1:-4.7,-0,-2.76 22 50975828 MERGED_DEL_2_107223 GGAAGACGAGACTGGGCGCTGTGGCTCATGCCTGTAATCGCGGCACTTTGGGAGGCCGAGGCAGGTAGATCACTTGCGGTCAGGAGTTGGAAACCAGCCTGGCCAACATAGTGAAAACCCATCTCTACTAAAAATACAAAATTAACCGGACTTGGTGTCAGGCACCTGTAATCCTAGCTACTTAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGACTGCACCACTGCACTCCAGCCTGGGGGACAGAGCGAGACTCTGTCACAAACAAACAAACAGCTCCTCAAATGAATATAAATATTTAATTCCAGTAAGATTTCCAATGTTAAAAATAGGAAAACACAAATTTAAAGTTCATATGCAAAAATGTGTTCAATTGTCAAAAAAATTCTAAAACAGGAAAAGAATAAAAGGGTTCTTAGGTATTAACCGCATGCGACAGTTAATTTGATGCACCAGGTTGGCTGGGCCACGCACCCCTGGCAGCTCTGTGCATTCCCGGCCCCTTCCTTGCTCCTGAAGCCCAGCCATCGCGGCATCTTTCTGCATTTGCTGCTTCTGAATCCCTTTGTGTCCTCTTTTCTTGACTTCCGCTGTTAACGTCATCTTACTAGGTAACGATTCGCTATGTTAATGTTTTTCCTGTTCACATTCCTGGTGTGGCTGTTCCCTTCTGTTTGGAACTAAGTCGTGATAGAGATTTTCGGAGGGGAAGATGAGAGAGGTTCGGTGAGTGTATCAGGCAGGGGTA G . . LDAF=0.0298;AN=2184;END=50976604;CIEND=-48,105;HOMLEN=3;THETA=0.0028;AVGPOST=0.982;CIPOS=-73,84;ERATE=0.0019;VT=SV;AC=50;SVLEN=-776;HOMSEQ=GAA;SVTYPE=DEL;RSQ=0.7649;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.09 GT:DS:GL 0|0:0:-0,-3.9,-50.73 0|0:0.05:0,0,0 0|0:0.05:0,0,0 0|0:0:-0.44,-0.2,-4.87 0|0:0.05:0,0,0 22 50975974 rs114260714 C T 100 PASS AC=17;ERATE=0.0004;AA=C;AN=2184;VT=SNP;THETA=0.0018;AVGPOST=0.9991;RSQ=0.9553;SNPSOURCE=LOWCOV;LDAF=0.0082;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0,-2.17,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0.12,-0.61,-3.8 22 50976025 rs186443036 A G 100 PASS ERATE=0.0005;AN=2184;THETA=0.0041;VT=SNP;AA=A;LDAF=0.0056;SNPSOURCE=LOWCOV;AVGPOST=0.9931;AC=11;RSQ=0.6605;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.02,-5 0|0:0:-0.08,-0.76,-3.66 0|0:0:-0.21,-0.43,-1.86 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50976043 rs5770867 T C 100 PASS AVGPOST=0.9759;AA=C;AN=2184;VT=SNP;AC=524;RSQ=0.9532;THETA=0.0028;ERATE=0.0018;SNPSOURCE=LOWCOV;LDAF=0.2402;AF=0.24;ASN_AF=0.25;AMR_AF=0.21;AFR_AF=0.45;EUR_AF=0.11 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.19,-0.49,-1.55 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 22 50976073 rs5770868 T C 100 PASS THETA=0.0021;AC=266;LDAF=0.1215;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9595;AVGPOST=0.9881;ERATE=0.0006;AF=0.12;ASN_AF=0.25;AMR_AF=0.16;AFR_AF=0.01;EUR_AF=0.08 GT:DS:GL 0|0:0:-0.03,-1.16,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.41 0|0:0.1:-0.23,-0.41,-1.61 22 50976152 rs9616864 T C 100 PASS ERATE=0.0005;AA=T;AN=2184;VT=SNP;RSQ=0.9788;SNPSOURCE=LOWCOV;AC=202;AVGPOST=0.9955;LDAF=0.0923;THETA=0.0007;AF=0.09;ASN_AF=0.1;AMR_AF=0.1;AFR_AF=0.1;EUR_AF=0.08 GT:DS:GL 1|0:1:-5,-0,-4.7 0|0:0:-0,-2.61,-5 0|0:0:-0,-2.11,-5 0|1:1:-0.03,-1.18,-5 0|0:0:-0,-2.58,-5 22 50976276 rs74709804 G C 100 PASS AC=62;ERATE=0.0004;LDAF=0.0285;AA=g;AN=2184;VT=SNP;THETA=0.0019;SNPSOURCE=LOWCOV;RSQ=0.975;AVGPOST=0.9982;AF=0.03;AMR_AF=0.01;AFR_AF=0.12 GT:DS:GL 0|0:0:-0,-2.37,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.01,-1.62,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.01,-1.8,-5 22 50976353 rs117995142 C T 100 PASS ERATE=0.0004;AN=2184;RSQ=0.5905;VT=SNP;LDAF=0.0019;AA=c;THETA=0.0076;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-2.78,-5 0|0:0:-0,-2.69,-5 0|0:0:-0.01,-1.55,-5 0|0:0:-0.07,-0.81,-5 22 50976461 rs114318765 T C 100 PASS AC=12;AA=T;AN=2184;VT=SNP;RSQ=0.9166;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0051;ERATE=0.0003;LDAF=0.006;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-3.15,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-2.97,-5 0|0:0:-0,-2.65,-5 22 50976472 rs145642070 C G 100 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=c;RSQ=0.8156;LDAF=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-3.92,-5 0|0:0:-0,-3.04,-5 0|0:0:-0,-2.34,-5 22 50976486 rs191291676 A G 100 PASS RSQ=0.9018;LDAF=0.0021;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.0018;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.07,-5 0|0:0:-0,-2.88,-5 0|0:0:-0,-2.39,-5 22 50976539 rs112287299 A AACTC 819 PASS ERATE=0.0005;THETA=0.0002;AN=2184;AC=283;VT=INDEL;AVGPOST=0.9913;RSQ=0.9711;LDAF=0.1315;AF=0.13;ASN_AF=0.1;AMR_AF=0.12;AFR_AF=0.25;EUR_AF=0.08 GT:DS:GL 1|0:1:-28.1,-1.2,0 0|0:0:0,0,0 0|0:0:0,-0.3,-5.9 0|1:1:-7.8,0,-5.4 0|0:0:0,-0.6,-11.9 22 50976543 rs182839908 C T 100 PASS AA=T;AN=2184;AC=8;RSQ=0.9032;VT=SNP;AVGPOST=0.9989;LDAF=0.0038;THETA=0.0053;ERATE=0.0008;SNPSOURCE=LOWCOV;AF=0.0037;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.02,-1.41,-5 0|0:0:-0,-1.96,-5 0|0:0:-0,-3.15,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.04,-1.08,-5 22 50976550 rs186796849 G T 100 PASS RSQ=0.723;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;THETA=0.0058;ERATE=0.0003;AVGPOST=0.9995;AC=2;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.01,-1.85,-5 22 50976611 rs192312139 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.8015;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.002;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.51,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0:0,-5,-5 22 50976638 rs148474520 C T 100 PASS RSQ=0.715;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-3.17,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.73,-5 0|0:0:-0.1,-0.67,-4.4 0|0:0:-0,-4.1,-5 22 50976645 rs183359967 T G 100 PASS AVGPOST=1;AA=T;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.84,-5 0|0:0:0,-5,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.06,-0.91,-5 0|0:0:0,-5,-5 22 50976660 rs142801028 A G 100 PASS AN=2184;THETA=0.0005;VT=SNP;AA=A;RSQ=0.9097;AC=5;LDAF=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.56,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.06,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0,-3.42,-5 22 50976753 rs187261876 C A 100 PASS ERATE=0.0005;AA=C;AN=2184;RSQ=0.9004;AVGPOST=0.9979;VT=SNP;THETA=0.0011;AC=15;SNPSOURCE=LOWCOV;LDAF=0.0077;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.12,-0.63,-4.1 0|0:0:-0.12,-0.61,-3.09 0|0:0:-0.05,-0.94,-5 0|0:0:-0.11,-0.64,-4 22 50976754 rs131788 T C 100 PASS LDAF=0.8174;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9895;VT=SNP;RSQ=0.9754;SNPSOURCE=LOWCOV;AC=1787;ERATE=0.0007;AF=0.82;ASN_AF=0.98;AMR_AF=0.76;AFR_AF=0.83;EUR_AF=0.72 GT:DS:GL 1|1:2:-5,-1.37,-0.02 1|1:2:-5,-0.67,-0.1 0|0:0:-0.12,-0.62,-3.17 0|0:0:-0.05,-0.94,-5 1|0:0.9:-0.11,-0.64,-4.1 22 50976794 rs112188865 T C 100 PASS THETA=0.0061;RSQ=0.8318;AA=T;AN=2184;VT=SNP;AC=41;SNPSOURCE=LOWCOV;ERATE=0.0029;LDAF=0.0213;AVGPOST=0.991;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.19,-0.45,-2.21 0|0:0:-0.04,-1.04,-5 0|0:0:-0.18,-0.48,-2.21 0|0:0:-0.19,-0.46,-2.16 22 50976827 rs193082421 G A 100 PASS ERATE=0.0004;AVGPOST=0.9977;AA=G;AN=2184;RSQ=0.6371;VT=SNP;THETA=0.0011;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.15,-0.54,-2.73 0|0:0:-0.18,-0.47,-2.15 0|0:0:-0.48,-0.48,-0.48 22 50976997 rs185287733 A C 100 PASS THETA=0.0009;RSQ=0.7151;AN=2184;AVGPOST=0.9996;VT=SNP;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0,-2.1,-5 0|0:0:-0,-3.62,-5 0|0:0:-1.35,-0.02,-3.8 0|0:0:-0,-2.92,-5 22 50977074 rs151026141 C T 100 PASS AC=7;ERATE=0.0004;AA=C;AN=2184;VT=SNP;THETA=0.0027;RSQ=0.7179;AVGPOST=0.9976;SNPSOURCE=LOWCOV;LDAF=0.0031;AF=0.0032;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.52,-5 0|0:0:-0.01,-1.7,-5 0|0:0:-0.01,-1.6,-5 0|0:0:-0.12,-0.6,-3.7 0|0:0:-0.01,-1.55,-5 22 50977105 rs142338283 G A 100 PASS AA=G;AN=2184;VT=SNP;AC=23;RSQ=0.9775;THETA=0.0037;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0108;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.08,-0.75,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.04,-1.11,-5 0|0:0:-0.23,-0.42,-1.56 0|0:0:-0.07,-0.81,-5 22 50977125 rs146657692 G C 100 PASS ERATE=0.0004;AC=30;AA=G;AN=2184;VT=SNP;RSQ=0.8939;AVGPOST=0.9956;SNPSOURCE=LOWCOV;THETA=0.0029;LDAF=0.0139;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.74,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.13,-0.6,-3.59 0|0:0:-0.04,-1.08,-5 22 50977167 rs5770769 A T 100 PASS AC=330;THETA=0.0002;RSQ=0.9929;AN=2184;AVGPOST=0.9975;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.1508;AF=0.15;ASN_AF=0.28;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.54,-5 0|0:0:-0,-2.05,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.1,-0.67,-4.4 1|0:1:-5,-0,-2.77 22 50977345 rs58304765 A G 100 PASS THETA=0.0015;LDAF=0.2056;AVGPOST=0.9848;AA=G;AN=2184;RSQ=0.9638;VT=SNP;ERATE=0.0017;SNPSOURCE=LOWCOV;AC=455;AF=0.21;ASN_AF=0.28;AMR_AF=0.17;AFR_AF=0.32;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.16,-0.52,-2.26 0|0:0:-0.18,-0.48,-2.21 1|0:1:-0.24,-0.41,-1.49 22 50977412 rs188262257 G A 100 PASS AVGPOST=0.9946;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=31;ERATE=0.0008;LDAF=0.015;SNPSOURCE=LOWCOV;RSQ=0.8681;AF=0.01;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0,-2.08,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50977442 rs192790309 G A 100 PASS RSQ=0.6334;THETA=0.0004;AA=G;AN=2184;ERATE=0.0009;VT=SNP;AC=10;LDAF=0.0063;SNPSOURCE=LOWCOV;AVGPOST=0.9949;AF=0.0046;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.33,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50977511 rs57741614 C T 100 PASS LDAF=0.0368;AA=C;AN=2184;VT=SNP;AC=78;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.9623;AVGPOST=0.9965;AF=0.04;AMR_AF=0.01;AFR_AF=0.15 GT:DS:GL 0|0:0:-0,-2.69,-5 0|0:0.15:-0.05,-0.96,-5 0|0:0:-0.06,-0.88,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.62,-3.85 22 50977724 rs183623268 C A 100 PASS ERATE=0.0004;LDAF=0.0009;AA=C;RSQ=0.7896;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0.02,-1.31,-5 0|0:0:-0.02,-1.27,-5 0|0:0:-0.03,-1.12,-5 0|0:0:-0.02,-1.38,-5 22 50977738 rs470118 T C 100 PASS ERATE=0.0004;RSQ=0.9937;AA=C;THETA=0.0004;AN=2184;AC=1755;VT=SNP;LDAF=0.8024;AVGPOST=0.997;SNPSOURCE=LOWCOV;AF=0.8;ASN_AF=0.97;AMR_AF=0.75;AFR_AF=0.83;EUR_AF=0.68 GT:DS:GL 1|1:2:-5,-0.9,-0.06 1|1:2:-5,-2.17,-0 0|0:0:-0.07,-0.83,-5 0|0:0:-0.02,-1.44,-5 1|0:1.05:-5,-1.27,-0.02 22 50977774 rs188288970 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;THETA=0.0001;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;RSQ=0.4937;AC=2;AVGPOST=0.9982;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.01,-1.77,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.11,-0.66,-4.7 22 50977914 rs150445995 G A 100 PASS THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-3,-5 0|0:0:-0,-2.49,-5 0|0:0:-0,-2.76,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0.01,-1.6,-5 22 50978024 rs140521 C A 100 PASS ERATE=0.0004;THETA=0.0002;AN=2184;VT=SNP;AC=1771;AVGPOST=0.9976;AA=A;LDAF=0.8099;SNPSOURCE=LOWCOV;RSQ=0.9947;AF=0.81;ASN_AF=0.98;AMR_AF=0.75;AFR_AF=0.84;EUR_AF=0.69 GT:DS:GL 1|1:2:-5,-1.97,-0 1|1:2:-5,-0.59,-0.13 0|0:0:-0,-2.54,-5 0|0:0:-0.02,-1.47,-5 1|0:1:-5,0,-5 22 50978089 rs138338062 G A 100 PASS AVGPOST=0.9977;AA=G;AN=2184;LDAF=0.0032;THETA=0.0005;VT=SNP;AC=5;SNPSOURCE=LOWCOV;RSQ=0.7881;ERATE=0.0003;AF=0.0023;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0,-3.22,-5 0|0:0:-0,-2.21,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.02,-1.32,-5 22 50978206 rs149627802 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.7337;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.06,-5 0|0:0:-0,-4,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0,-1.97,-5 0|0:0:-0,-3.38,-5 22 50978217 rs62239507 C T 100 PASS AA=C;LDAF=0.0058;AN=2184;AC=13;THETA=0.0005;RSQ=0.9397;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.36,-5 0|0:0:-0,-2.97,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.01,-1.59,-5 0|0:0:-0,-3.66,-5 22 50978228 rs117388248 G A 100 PASS AC=12;ERATE=0.0004;RSQ=0.9105;THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.0055;AF=0.01;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.35,-5 0|0:0:-0,-3.62,-5 0|0:0:-0.01,-1.49,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0,-4,-5 22 50978262 rs5770871 G A 100 PASS AC=307;ERATE=0.0004;AVGPOST=0.9985;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.9955;LDAF=0.1402;AF=0.14;ASN_AF=0.28;AMR_AF=0.15;AFR_AF=0.05;EUR_AF=0.09 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-4.1,-5 0|0:0:-0,-2.07,-5 0|0:0:-0.01,-1.74,-5 1|0:1:-5,0,-5 22 50978302 rs116110924 T G 100 PASS AA=T;AN=2184;VT=SNP;THETA=0.0011;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9908;AVGPOST=0.9995;LDAF=0.0198;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0:-0,-2.36,-5 0|0:0:-0,-3.12,-5 0|0:0:-0.05,-0.97,-5 0|0:0:-0,-2.61,-5 22 50978372 rs181829164 A G 100 PASS RSQ=0.6107;AVGPOST=0.9994;THETA=0.0022;AN=2184;VT=SNP;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.7,-4.7 0|0:0:-0,-2.52,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.11,-0.64,-4.1 22 50978458 rs184969126 T A 100 PASS AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0028;LDAF=0.0006;RSQ=0.7318;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0,-2.52,-5 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0.01,-1.58,-5 22 50978504 rs9616789 G A 100 PASS THETA=0.0004;AVGPOST=0.9946;AA=G;AN=2184;VT=SNP;RSQ=0.9662;SNPSOURCE=LOWCOV;AC=134;ERATE=0.0007;LDAF=0.0625;AF=0.06;ASN_AF=0.1;AMR_AF=0.06;AFR_AF=0.03;EUR_AF=0.05 GT:DS:GL 1|0:1:-1.44,-0.02,-5 0|0:0:-0.2,-0.45,-2.12 0|0:0:-0.15,-0.53,-2.61 0|0:0:-0.18,-0.48,-2.2 0|0:0.05:-0.48,-0.48,-0.48 22 50978519 rs190517010 G A 100 PASS ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4144;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.3,-0.43,-0.88 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.42,-1.74 22 50978520 rs131787 C T 100 PASS AA=C;THETA=0.0002;LDAF=0.4944;AN=2184;AC=1079;VT=SNP;ERATE=0.0016;RSQ=0.9815;AVGPOST=0.9879;SNPSOURCE=LOWCOV;AF=0.49;ASN_AF=0.59;AMR_AF=0.49;AFR_AF=0.3;EUR_AF=0.55 GT:DS:GL 0|1:1:-5,-0,-2.76 1|1:2:-0.48,-0.48,-0.48 0|0:0:-0.3,-0.43,-0.88 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.43,-1.79 22 50978566 rs145977538 C G 100 PASS AA=C;AN=2184;VT=SNP;RSQ=0.9701;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;THETA=0.0003;LDAF=0.0203;AF=0.02;AMR_AF=0.01;AFR_AF=0.08 GT:DS:GL 0|0:0:-0.01,-1.49,-5 0|0:0:-0.22,-0.42,-1.82 0|0:0:-0.2,-0.45,-2.1 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50978649 rs9616866 C G 100 PASS AC=219;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9935;VT=SNP;RSQ=0.9736;SNPSOURCE=LOWCOV;LDAF=0.1003;ERATE=0.0003;AF=0.1;ASN_AF=0.1;AMR_AF=0.08;AFR_AF=0.2;EUR_AF=0.05 GT:DS:GL 1|0:1:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.46,-1.32 0|0:0:-0.23,-0.45,-1.19 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50978692 rs8135696 G A 100 PASS AC=72;ERATE=0.0005;RSQ=0.9813;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9987;LDAF=0.0334;AF=0.03;AMR_AF=0.01;AFR_AF=0.14 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.11,-0.66,-4.22 0|0:0:-0,-2.32,-5 0|0:0:-0.18,-0.48,-2.18 0|0:0:-0.04,-1.07,-5 22 50978856 rs6009982 T C 100 PASS ERATE=0.0004;AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6941;THETA=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.07,-5 0|0:0:-0.11,-0.64,-4.22 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.06,-0.92,-5 0|0:0:-0.04,-1.04,-5 22 50978866 rs141270593 G A 100 PASS 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A ATATATG 540 PASS ERATE=0.0013;THETA=0.0002;AN=2184;VT=INDEL;RSQ=0.8775;AC=412;AVGPOST=0.952;LDAF=0.1867;AF=0.19;ASN_AF=0.27;AMR_AF=0.18;AFR_AF=0.24;EUR_AF=0.1 GT:DS:GL 1|0:1:-24.8,0,-12.3 0|0:0:0,-0.3,-6.9 0|0:0.05:0,-0.9,-19.9 0|0:0:0,-0.3,-6.9 1|0:0.8:0,0,0 22 50978881 . A ATATG 401 PASS ERATE=0.0005;AC=401;RSQ=0.8808;AN=2184;VT=INDEL;THETA=0.0005;LDAF=0.1803;AVGPOST=0.954;AF=0.18;ASN_AF=0.26;AMR_AF=0.17;AFR_AF=0.23;EUR_AF=0.1 GT:DS:GL 1|0:1:-22.1,0,-9.9 0|0:0:0,-0.3,-5.7 0|0:0:0,-0.9,-16.4 0|0:0:0,-0.3,-5.7 1|0:0.8:0,0,0 22 50978883 . A ATG 190 PASS LDAF=0.0958;AN=2184;AVGPOST=0.9818;RSQ=0.9214;VT=INDEL;THETA=0.0005;AC=216;ERATE=0.0006;AF=0.1;ASN_AF=0.09;AMR_AF=0.08;AFR_AF=0.2;EUR_AF=0.05 GT:DS:GL 1|0:1:-12.3,0,-7.7 0|0:0:0,-0.3,-4.6 0|0:0:0,-0.9,-13 0|0:0:0,-0.3,-4.6 0|0:0:0,0,0 22 50978924 rs150759497 G A 100 PASS AA=G;AN=2184;THETA=0.004;RSQ=0.5546;LDAF=0.0037;AC=6;VT=SNP;AVGPOST=0.9953;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.02,-1.45,-5 0|0:0:-0.02,-1.32,-5 0|0:0:-0.08,-0.76,-4.7 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.22,-0.42,-1.77 22 50978931 rs131786 C T 100 PASS AVGPOST=0.9389;LDAF=0.5201;AC=1135;AN=2184;RSQ=0.9032;THETA=0.0005;VT=SNP;AA=c;ERATE=0.0163;SNPSOURCE=LOWCOV;AF=0.52;ASN_AF=0.62;AMR_AF=0.51;AFR_AF=0.35;EUR_AF=0.56 GT:DS:GL 0|1:0.95:-2.03,-0,-3.52 1|1:2:-5,-1.65,-0.01 0|0:0:-0.05,-0.98,-5 1|0:0.6:-0.48,-0.48,-0.48 0|1:1:-2.63,-0.45,-0.19 22 50978942 rs57187251 TC T 130 PASS THETA=0.0014;AN=2184;AC=283;VT=INDEL;RSQ=0.9508;AVGPOST=0.984;ERATE=0.0007;LDAF=0.1278;AF=0.13;ASN_AF=0.25;AMR_AF=0.15;AFR_AF=0.04;EUR_AF=0.09 GT:DS:GL 0|0:0:0,-0.9,-13 0|0:0:0,-0.3,-4.3 0|0:0:0,-0.3,-4.3 0|0:0:0,0,0 1|0:0.9:0,0,0 22 50979381 rs186966119 T C 100 PASS AA=T;AN=2184;THETA=0.0038;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.5491;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.67,-5 0|0:0:-0,-4.4,-5 0|0:0:-0,-3.36,-5 0|0:0:-0.18,-0.47,-2.17 0|0:0:-0.01,-1.58,-5 22 50979482 rs17001605 C G 100 PASS AA=C;RSQ=0.9806;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9974;LDAF=0.0465;AC=99;AF=0.05;AMR_AF=0.01;AFR_AF=0.19 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0,-3.3,-5 0|0:0:-0,-2,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.09,-5 22 50979525 rs12168962 C A 100 PASS AC=72;AA=C;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9865;ERATE=0.0003;LDAF=0.0331;AF=0.03;AMR_AF=0.01;AFR_AF=0.14 GT:DS:GL 0|0:0:-0.18,-0.46,-2.77 0|0:0:-0,-2.16,-5 0|0:0:-0,-4.4,-5 0|0:0:-0.1,-0.68,-4 0|0:0:-0,-2.88,-5 22 50979589 rs139205541 C G 100 PASS ERATE=0.0004;AA=C;AN=2184;AC=6;AVGPOST=0.9996;VT=SNP;RSQ=0.9317;LDAF=0.0028;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.48,-5 0|0:0:-0,-2.23,-5 0|0:0:-0,-3,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-2.36,-5 22 50979629 rs149968337 T C 100 PASS AA=T;AN=2184;AC=6;VT=SNP;THETA=0.0006;AVGPOST=0.9998;LDAF=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9614;AF=0.0027;AMR_AF=0.01;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.03,-1.22,-5 0|0:0:-0.01,-1.73,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.04,-1.09,-5 22 50979725 . AG A 607 PASS ERATE=0.0004;THETA=0.0004;AN=2184;VT=INDEL;AC=38;RSQ=0.9531;AVGPOST=0.9974;LDAF=0.0184;AF=0.02;AMR_AF=0.01;AFR_AF=0.07 GT:DS:GL 0|0:0:0,-1.8,-28.8 0|0:0:0,-0.3,-4.8 0|0:0:0,0,0 0|0:0:0,-0.9,-14.4 0|0:0:0,0,0 22 50979758 rs191384439 T G 100 PASS RSQ=0.8224;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9953;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=19;LDAF=0.0104;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.12,-0.63,-3.3 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.93,-5 0|0:0:-0.48,-0.48,-0.48 22 50979760 rs145090037 T G 100 PASS AA=G;AN=2184;VT=SNP;AC=123;ERATE=0.002;SNPSOURCE=LOWCOV;LDAF=0.058;THETA=0.0003;RSQ=0.9115;AVGPOST=0.9876;AF=0.06;ASN_AF=0.13;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.12,-0.61,-3.21 0|0:0:-0.48,-0.48,-0.48 0|0:0.1:-0.03,-1.2,-5 0|0:0:-0.48,-0.48,-0.48 22 50979760 . T TG 82 PASS RSQ=0.9049;AC=120;LDAF=0.0575;AN=2184;VT=INDEL;AVGPOST=0.9862;ERATE=0.0012;THETA=0.0007;AF=0.05;ASN_AF=0.13;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.04 GT:DS:GL 0|0:0:0,-0.6,-5.6 0|0:0:0,-0.3,-4.1 0|0:0:0,0,0 0|0:0:0,-0.9,-11.3 0|0:0:0,0,0 22 50980044 rs181289096 C A 100 PASS ERATE=0.0004;AA=C;THETA=0.0002;RSQ=0.5438;AVGPOST=0.9983;AN=2184;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0,-2.38,-5 0|0:0:-0.07,-0.84,-5 0|0:0:-0.01,-1.56,-5 0|0:0:-0.03,-1.15,-5 0|0:0:-0.19,-0.46,-2.15 22 50980071 rs131785 G A 100 PASS ERATE=0.0005;AC=1762;THETA=0.0004;LDAF=0.8059;AN=2184;RSQ=0.9927;VT=SNP;AVGPOST=0.9971;AA=A;SNPSOURCE=LOWCOV;AF=0.81;ASN_AF=0.98;AMR_AF=0.75;AFR_AF=0.82;EUR_AF=0.69 GT:DS:GL 1|1:2:-5,-2.22,-0 1|1:2:-5,-2.41,-0 0|0:0:-0,-2.28,-5 0|0:0:-0.03,-1.16,-5 1|0:1:-2.25,-0.02,-1.42 22 50980075 rs184971488 C A 100 PASS ERATE=0.0004;RSQ=0.7901;AA=C;AN=2184;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.01,-1.72,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.07,-0.83,-5 22 50980113 rs189777975 G A 100 PASS RSQ=0.7112;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-1.99,-5 0|0:0:-0.03,-1.16,-5 0|0:0:-0,-3.03,-5 0|0:0:-0.02,-1.38,-5 0|0:0:-0,-2.79,-5 22 50980173 rs113287312 TTTTG T 473 PASS AVGPOST=0.9977;RSQ=0.9889;AN=2184;VT=INDEL;THETA=0.0005;AC=216;ERATE=0.0003;LDAF=0.0982;AF=0.1;ASN_AF=0.1;AMR_AF=0.07;AFR_AF=0.19;EUR_AF=0.05 GT:DS:GL 1|0:1:-10.4,-0.6,0 0|0:0:0,-0.6,-15.2 0|0:0:0,-2.4,-60.6 0|0:0:0,-0.6,-15.2 0|0:0:0,-1.8,-45.6 22 50980183 . TTG T 101 PASS THETA=0.0004;AVGPOST=0.9864;AN=2184;VT=INDEL;LDAF=0.0909;AC=204;ERATE=0.0019;RSQ=0.9388;AF=0.09;ASN_AF=0.1;AMR_AF=0.07;AFR_AF=0.18;EUR_AF=0.05 GT:DS:GL 1|0:1:-2.8,-0.6,0 0|0:0:0,-0.9,-16.4 0|0:0:0,-2.4,-44 0|0:0:0,-0.6,-11 0|0:0:0,-2.1,-36.7 22 50980210 rs182316904 C T 100 PASS AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0027;RSQ=0.7622;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0,-3.28,-5 0|0:0:-0,-2.1,-5 0|0:0:-0.01,-1.88,-5 22 50980226 rs114664956 G A 100 PASS RSQ=0.992;AA=G;AN=2184;AC=16;VT=SNP;LDAF=0.0074;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-1.99,-5 0|0:0:-0,-2.11,-5 0|0:0:-0.02,-1.36,-5 22 50980256 rs140745247 C T 100 PASS LDAF=0.0013;AA=C;THETA=0.0004;AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.73;SNPSOURCE=LOWCOV;AC=2;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.002 GT:DS:GL 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RSQ=0.9608;AA=T;AN=2184;VT=SNP;ERATE=0.001;AC=315;LDAF=0.1458;AVGPOST=0.9872;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.14;ASN_AF=0.27;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.06,-5 0|0:0:-0.08,-0.8,-5 0|0:0:-0.48,-0.48,-0.48 1|0:0.95:-0.48,-0.48,-0.48 22 50981681 rs191358398 G A 100 PASS AC=12;RSQ=0.6233;LDAF=0.0068;AA=G;AN=2184;VT=SNP;ERATE=0.001;THETA=0.0017;AVGPOST=0.9938;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.04,-1.04,-5 0|0:0:-0.08,-0.79,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50981734 rs6009983 C T 100 PASS AA=C;THETA=0.0032;AN=2184;AVGPOST=0.9746;LDAF=0.0201;AC=26;VT=SNP;ERATE=0.0038;RSQ=0.524;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.04;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.86,-5 0|0:0:-0.2,-0.44,-2 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.36,-0.41,-0.76 0|0:0:-0.48,-0.48,-0.48 22 50981749 rs190620937 C A 100 PASS ERATE=0.0005;LDAF=0.0009;AA=C;AN=2184;THETA=0.0038;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4941;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.21,-0.43,-1.96 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.48,-0.48,-0.48 22 50981758 rs182296793 G A 100 PASS RSQ=0.3892;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0016;ERATE=0.0006;AVGPOST=0.9984;LDAF=0.0012;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0.21,-0.43,-1.93 0|0:0:-0.12,-0.62,-4 0|0:0:-0.03,-1.12,-5 0|0:0:-0.48,-0.48,-0.48 22 50981796 rs115986675 G A 100 PASS LDAF=0.0132;AA=G;AN=2184;RSQ=0.9292;VT=SNP;THETA=0.0046;SNPSOURCE=LOWCOV;AC=27;AVGPOST=0.9978;ERATE=0.0007;AF=0.01;AMR_AF=0.01;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.2,-5 0|0:0:-0.07,-0.83,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0.18,-0.47,-3.07 22 50981799 rs185119440 T A 100 PASS ERATE=0.0004;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=0.578;LDAF=0.0029;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.02,-1.3,-5 0|0:0:-0,-2.85,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.18,-0.47,-3.07 22 50981829 rs5770773 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0061;AN=2184;RSQ=0.9877;AVGPOST=0.9962;VT=SNP;LDAF=0.1434;SNPSOURCE=LOWCOV;AC=312;AF=0.14;ASN_AF=0.27;AMR_AF=0.17;AFR_AF=0.04;EUR_AF=0.1 GT:DS:GL 0|0:0:-0,-2.13,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.19,-0.46,-2.39 1|0:0.85:-0.07,-0.85,-5 22 50981868 rs190076266 T G 100 PASS AC=7;ERATE=0.0004;RSQ=0.7099;AVGPOST=0.9966;LDAF=0.0047;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.81,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0,-2.08,-5 0|0:0:-0.06,-0.91,-5 0|0:0:-0.02,-1.33,-5 22 50981939 rs181078098 T C 100 PASS AC=12;ERATE=0.0004;AA=T;AN=2184;THETA=0.0041;VT=SNP;LDAF=0.0064;SNPSOURCE=LOWCOV;RSQ=0.7544;AVGPOST=0.996;AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.03,-1.22,-5 0|0:0:-0.24,-0.4,-1.52 0|0:0:-0.11,-0.65,-3.92 0|0:0:-0.06,-0.91,-5 0|0:0:-0.2,-0.45,-2.09 22 50981942 rs131783 C T 100 PASS ERATE=0.0104;RSQ=0.9098;AA=C;AVGPOST=0.9277;LDAF=0.5223;AN=2184;AC=1158;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.53;ASN_AF=0.84;AMR_AF=0.56;AFR_AF=0.18;EUR_AF=0.51 GT:DS:GL 0|1:1:-5,-0.04,-1.03 1|1:1.9:-2.05,-0.42,-0.22 0|0:0.05:-0.11,-0.64,-3.8 0|0:0:-0.06,-0.9,-5 1|0:0.6:-0.12,-0.63,-3.92 22 50981970 rs185409445 G A 100 PASS ERATE=0.0005;AA=G;AN=2184;AC=8;LDAF=0.0043;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9968;THETA=0.0007;RSQ=0.7314;AF=0.0037;ASN_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.08,-0.77,-5 0|0:0:-0.2,-0.44,-2.05 0|0:0:-0.02,-1.29,-5 22 50982014 rs190220916 C T 100 PASS AVGPOST=0.9843;AA=C;AN=2184;RSQ=0.5142;LDAF=0.0125;VT=SNP;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=19;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.92,-5 0|0:0:-0.13,-0.6,-3.8 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.2,-0.44,-2.06 0|0:0:-0.48,-0.48,-0.48 22 50982158 rs5770877 T C 100 PASS ERATE=0.0077;AN=2184;THETA=0.0005;VT=SNP;AC=696;LDAF=0.3221;AVGPOST=0.9266;SNPSOURCE=LOWCOV;RSQ=0.8758;AA=t;AF=0.32;ASN_AF=0.37;AMR_AF=0.29;AFR_AF=0.51;EUR_AF=0.16 GT:DS:GL 1|0:1:-5,0,-5 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4 1|0:0.85:-0.34,-0.39,-0.86 22 50982198 rs140572037 G A 100 PASS AC=7;ERATE=0.0005;RSQ=0.6978;AA=G;AN=2184;LDAF=0.0037;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9974;AF=0.0032;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.13,-0.59,-3.74 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.1,-0.69,-4.4 0|0:0:-0.2,-0.44,-2.64 22 50982246 rs6009985 T C 100 PASS LDAF=0.0013;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9987;AC=2;RSQ=0.577;AF=0.0009;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.03,-1.23,-5 0|0:0:-0.02,-1.29,-5 0|0:0:-0.01,-1.82,-5 0|0:0:-0.19,-0.46,-2.4 0|0:0:-0.48,-0.48,-0.48 22 50982272 rs72619590 G A 100 PASS ERATE=0.0004;RSQ=0.9827;AA=G;AN=2184;LDAF=0.0609;AC=132;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.06;ASN_AF=0.11;AMR_AF=0.07;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 1|0:1:-5,-0.03,-1.2 0|0:0.05:-0.04,-1.08,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.1,-0.68,-4.4 0|0:0.1:-0.07,-0.85,-5 22 50982289 rs186125403 A T 100 PASS ERATE=0.0004;AN=2184;RSQ=0.5736;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;AC=1;THETA=0.007;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.06,-0.87,-5 0|0:0:-0.05,-1,-5 0|0:0:-0.06,-0.89,-5 0|0:0:-0.07,-0.84,-5 22 50982457 rs131781 G A 100 PASS AC=1125;AVGPOST=0.8989;AA=G;AN=2184;ERATE=0.015;RSQ=0.8469;VT=SNP;LDAF=0.5133;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.52;ASN_AF=0.59;AMR_AF=0.48;AFR_AF=0.34;EUR_AF=0.59 GT:DS:GL 1|1:1.4:-0.48,-0.48,-0.48 0|1:0.85:-0.15,-0.54,-3.13 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.19,-0.46,-2.4 0|0:0.5:-0.48,-0.48,-0.48 22 50982539 rs131780 C G 100 PASS THETA=0.0009;AA=C;AN=2184;RSQ=0.9088;VT=SNP;AVGPOST=0.9587;LDAF=0.2091;ERATE=0.0018;SNPSOURCE=LOWCOV;AC=454;AF=0.21;ASN_AF=0.27;AMR_AF=0.3;AFR_AF=0.02;EUR_AF=0.24 GT:DS:GL 0|1:0.95:-2.94,-0.46,-0.19 0|0:0:-0.01,-1.52,-5 0|0:0:-0.12,-0.62,-3.92 0|0:0:-0.09,-0.72,-4.7 0|0:0.35:-0.19,-0.46,-2.15 22 50982582 rs192135600 G A 100 PASS AA=G;AN=2184;AVGPOST=0.9962;LDAF=0.0032;VT=SNP;RSQ=0.486;THETA=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=3;AF=0.0014;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.18,-0.47,-2.4 0|0:0:-0.19,-0.45,-2.17 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.1,-0.68,-4.4 0|0:0:-0.12,-0.63,-3.92 22 50982599 rs183877234 C T 100 PASS AA=C;AN=2184;VT=SNP;THETA=0.0103;LDAF=0.0022;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;RSQ=0.491;AVGPOST=0.9974;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.47,-2.36 0|0:0:-0.12,-0.61,-3.11 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.19,-0.47,-2.1 0|0:0:-0.19,-0.45,-2.13 22 50982669 rs188540585 C T 100 PASS ERATE=0.0005;RSQ=0.8562;AVGPOST=0.9957;AA=C;AN=2184;AC=20;VT=SNP;LDAF=0.0107;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.08,-0.79,-4 0|0:0:-0.22,-0.46,-1.27 0|0:0:-0.11,-0.66,-4.7 0|0:0:-0.21,-0.43,-1.9 22 50982899 rs191636044 G T 100 PASS AA=G;AN=2184;VT=SNP;THETA=0.0091;RSQ=0.4706;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9987;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.03,-1.23,-5 0|0:0:-0.01,-1.51,-5 0|0:0:-0.19,-0.46,-2.01 0|0:0:-0.48,-0.48,-0.48 22 50982986 rs5770878 C G 100 PASS AA=C;RSQ=0.9473;AN=2184;AVGPOST=0.9702;ERATE=0.0009;VT=SNP;AC=679;THETA=0.0025;SNPSOURCE=LOWCOV;LDAF=0.3136;AF=0.31;ASN_AF=0.4;AMR_AF=0.38;AFR_AF=0.17;EUR_AF=0.3 GT:DS:GL 0|1:1.05:-0.48,-0.48,-0.48 0|0:0:-0.02,-1.45,-5 0|0:0:-0.05,-0.97,-4.7 0|0:0.5:-0.11,-0.66,-4.7 1|0:1:-5,-0.03,-1.12 22 50982996 rs147445764 C T 100 PASS AVGPOST=0.9927;AA=C;AN=2184;ERATE=0.0009;VT=SNP;AC=9;SNPSOURCE=LOWCOV;RSQ=0.6045;THETA=0.0064;LDAF=0.0077;AF=0.0041;ASN_AF=0.02 GT:DS:GL 0|0:0:-0.18,-0.48,-2.46 0|0:0:-0.02,-1.31,-5 0|0:0:-0.02,-1.25,-5 0|0:0:-0.11,-0.67,-4.7 0|0:0:-0.06,-0.87,-5 22 50983108 rs139991485 G C 100 PASS ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6034;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.18,-0.47,-2.38 0|0:0:-0,-1.95,-5 0|0:0:-0.03,-1.21,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0.04,-1.07,-5 22 50983144 rs183147923 T C 100 PASS AVGPOST=0.9983;AA=T;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.6542;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.04,-1.1,-5 0|0:0:-0.01,-1.61,-5 0|0:0:-0.01,-1.74,-5 0|0:0:-0.04,-1.09,-5 22 50983332 rs6009920 C G 100 PASS THETA=0.0021;ERATE=0.0005;AA=C;AN=2184;RSQ=0.9814;VT=SNP;AC=198;SNPSOURCE=LOWCOV;LDAF=0.0906;AVGPOST=0.996;AF=0.09;AMR_AF=0.07;AFR_AF=0.13;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-3.18,-5 0|0:0:-0.07,-0.85,-4.4 0|0:0:-0.02,-1.26,-5 0|0:0:-0.06,-0.9,-5 0|1:0.6:-0.11,-0.64,-4 22 50983350 rs187078184 G C 100 PASS THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;RSQ=0.7794;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-3.25,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.03,-1.19,-5 0|0:0:-0.19,-0.46,-2.16 22 50983541 rs8138851 C T 100 PASS ERATE=0.0004;AA=C;RSQ=0.9755;AN=2184;AVGPOST=0.9975;VT=SNP;THETA=0.0025;SNPSOURCE=LOWCOV;AC=71;LDAF=0.0334;AF=0.03;AMR_AF=0.02;AFR_AF=0.13 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.04,-1.07,-5 0|0:0:-0.02,-1.35,-5 0|0:0:-0,-2.35,-5 0|0:0:-0.06,-0.86,-5 22 50983551 rs3752397 T C 100 PASS ERATE=0.0004;RSQ=0.9892;AA=T;AN=2184;AC=249;THETA=0.0008;LDAF=0.1139;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;AF=0.11;ASN_AF=0.27;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.05 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.07,-0.85,-5 0|0:0:-0,-2,-5 1|0:1:-5,0,-5 1|0:1.05:-2.4,-0.02,-1.4 22 50983729 rs114821185 G A 100 PASS RSQ=0.5731;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;LDAF=0.0031;AVGPOST=0.9965;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.47,-5 0|0:0:-0.09,-0.74,-2.95 0|0:0:-0.11,-0.67,-4 0|0:0:-0.06,-0.91,-5 22 50983936 rs6009986 A G 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9944;THETA=0.0008;VT=SNP;LDAF=0.3791;RSQ=0.9915;SNPSOURCE=LOWCOV;AC=828;AF=0.38;ASN_AF=0.39;AMR_AF=0.34;AFR_AF=0.59;EUR_AF=0.25 GT:DS:GL 0|0:0:-0.02,-1.47,-5 0|0:0:-0,-2.09,-5 0|0:0:-0,-2.35,-5 1|0:1:-2.42,-0,-3.59 1|1:2:-5,-2.44,-0 22 50983940 rs149199347 C T 100 PASS ERATE=0.0005;AVGPOST=0.9986;AA=C;AN=2184;VT=SNP;RSQ=0.575;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0.01,-1.53,-5 0|0:0:-0.01,-1.8,-5 0|0:0:-0,-2,-5 0|0:0:-0.05,-0.94,-5 0|0:0:-0,-2.71,-5 22 50984003 rs738938 A G 100 PASS LDAF=0.8773;AA=G;AN=2184;RSQ=0.9616;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9881;AC=1919;ERATE=0.0003;AF=0.88;ASN_AF=0.98;AMR_AF=0.8;AFR_AF=0.98;EUR_AF=0.77 GT:DS:GL 1|1:2:-5,-1.15,-0.03 1|1:1.95:-5,-0.42,-0.21 0|0:0.05:-0.13,-0.61,-2.21 1|0:1:-4.4,-0,-4.7 1|1:2:-5,-1.49,-0.01 22 50984052 rs75252999 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9944;AC=26;VT=SNP;RSQ=0.8366;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0144;AF=0.01;ASN_AF=0.05 GT:DS:GL 0|0:0:-0.11,-0.64,-4.1 0|0:0:-0.02,-1.39,-5 0|0:0:-0.03,-1.25,-5 0|0:0:-0.06,-0.92,-5 0|0:0:-0.01,-1.61,-5 22 50984055 rs5770775 T C 100 PASS AA=C;LDAF=0.3793;AN=2184;VT=SNP;ERATE=0.001;THETA=0.0056;RSQ=0.9878;SNPSOURCE=LOWCOV;AC=828;AVGPOST=0.9925;AF=0.38;ASN_AF=0.39;AMR_AF=0.34;AFR_AF=0.59;EUR_AF=0.25 GT:DS:GL 0|0:0:-0.11,-0.63,-4.1 0|0:0:-0.01,-1.5,-5 0|0:0:-0.02,-1.29,-5 1|0:1:-5,-0.43,-0.2 1|1:2:-5,-1.51,-0.01 22 50984089 rs117800807 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;VT=SNP;AC=24;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0128;RSQ=0.8906;AVGPOST=0.9965;AF=0.01;AMR_AF=0.01;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.11,-0.65,-4.4 0|0:0:-0.04,-1.03,-4.7 0|0:0:-0.2,-0.44,-2.01 0|0:0:-0.06,-0.89,-5 0|0:0.15:-1.96,-0,-4.7 22 50984127 rs115108715 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;AC=20;VT=SNP;LDAF=0.0099;SNPSOURCE=LOWCOV;RSQ=0.9038;AVGPOST=0.9974;AF=0.01;AMR_AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.5,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.13,-0.59,-2.77 0|0:0:-0.02,-1.27,-5 0|0:0:-0.03,-1.24,-5 22 50984365 rs77135372 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;AC=37;AVGPOST=0.9947;VT=SNP;LDAF=0.0192;THETA=0.0028;SNPSOURCE=LOWCOV;RSQ=0.8911;AF=0.02;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.01,-1.48,-5 0|0:0:-0.01,-1.52,-5 0|0:0:-1.01,-0.04,-5 22 50984416 rs140520 CTGGTGGGGT C 1041 PASS THETA=0.0004;AN=2184;VT=INDEL;ERATE=0.0024;AC=965;RSQ=0.9524;AVGPOST=0.9678;LDAF=0.4368;AF=0.44;ASN_AF=0.59;AMR_AF=0.44;AFR_AF=0.22;EUR_AF=0.48 GT:DS:GL 1|1:2:-68.5,-2.1,0 1|1:1.65:0,-0.3,-1.9 0|0:0:0,-0.3,-15.2 0|0:0:0,0,0 0|0:0:0,-0.3,-15.2 22 50984591 rs191936644 G A 100 PASS ERATE=0.0004;AA=G;AN=2184;RSQ=0.4503;THETA=0.0005;VT=SNP;LDAF=0.0019;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0,-2.26,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.13,-0.59,-3.62 0|0:0:-0.1,-0.67,-4.22 0|0:0:-0.11,-0.65,-4.7 22 50984599 rs7288373 G T 100 PASS AVGPOST=0.9943;AA=G;AN=2184;RSQ=0.9829;VT=SNP;THETA=0.0006;LDAF=0.1381;SNPSOURCE=LOWCOV;AC=299;ERATE=0.0007;AF=0.14;AMR_AF=0.08;AFR_AF=0.35;EUR_AF=0.13 GT:DS:GL 0|0:0:-0,-2.89,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.61,-3.8 0|0:0:-0.1,-0.69,-4.7 0|1:1:-2.79,-0.02,-1.34 22 50984708 rs41282351 C G 100 PASS AA=C;RSQ=0.9881;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=69;ERATE=0.0003;LDAF=0.0318;AVGPOST=0.9992;AF=0.03;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.06 GT:DS:GL 0|0:0:-0,-2.91,-5 0|0:0:-0.76,-0.08,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.9,-5 0|1:1:-0.31,-0.29,-4.7 22 50984738 rs182260712 C T 100 PASS ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9979;VT=SNP;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;RSQ=0.7046;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.34,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.03,-1.15,-5 0|0:0:-0.06,-0.89,-5 22 50984791 rs187625614 C T 100 PASS AA=C;ERATE=0.0042;AN=2184;AC=20;THETA=0.0008;VT=SNP;LDAF=0.0154;SNPSOURCE=LOWCOV;RSQ=0.4739;AVGPOST=0.98;AF=0.01;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.02;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.06,-0.87,-5 0|0:0.05:-0.22,-0.46,-1.32 0|0:0:-0.12,-0.62,-3.14 1|0:0.75:-0.06,-0.92,-5 1|0:1.1:-3.05,-0.48,-0.18 22 50984792 rs115113903 G C 100 PASS LDAF=0.0123;AA=G;AN=2184;ERATE=0.0009;THETA=0.0008;RSQ=0.7988;VT=SNP;AC=23;AVGPOST=0.9938;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.06,-0.88,-5 0|0:0.05:-0.22,-0.46,-1.34 0|0:0:-0.08,-0.77,-4.7 0|0:0:-0.06,-0.92,-5 0|0:0:-0.2,-0.44,-2.02 22 50985023 rs117961389 C A 100 PASS LDAF=0.0894;AA=C;AC=182;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0012;RSQ=0.8828;AVGPOST=0.9764;AF=0.08;ASN_AF=0.03;AMR_AF=0.06;AFR_AF=0.08;EUR_AF=0.14 GT:DS:GL 1|0:0.95:-0.48,-0.48,-0.48 0|0:0:-0.12,-0.61,-3.19 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.19,-0.46,-2.42 0|1:1:-0.48,-0.48,-0.48 22 50985195 rs78322592 C T 100 PASS RSQ=0.7714;AA=C;THETA=0.0004;AN=2184;VT=SNP;ERATE=0.0011;AC=15;SNPSOURCE=LOWCOV;AVGPOST=0.9949;LDAF=0.0091;AF=0.01;AMR_AF=0.01;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.05,-0.93,-5 0|0:0:-0.19,-0.46,-2.27 0|0:0:-0.44,-0.46,-0.54 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.19,-0.45,-2.12 22 50985204 rs111528202 C T 100 PASS AA=C;THETA=0.0004;AN=2184;LDAF=0.0159;ERATE=0.0009;AVGPOST=0.9894;VT=SNP;AC=32;RSQ=0.7481;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.06 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.24,-0.45,-1.15 0|0:0:-0.18,-0.47,-2.44 0|0:0:-0.12,-0.63,-3.92 22 50985269 rs5770881 T C 100 PASS LDAF=0.2688;AA=T;AN=2184;VT=SNP;ERATE=0.0026;AVGPOST=0.942;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.8957;AC=578;AF=0.26;ASN_AF=0.4;AMR_AF=0.26;AFR_AF=0.36;EUR_AF=0.1 GT:DS:GL 0|0:0.1:-0.18,-0.48,-2.49 0|0:0.15:-0.21,-0.46,-1.36 0|0:0:-0.48,-0.48,-0.48 1|0:1:-2.99,-0.48,-0.18 1|0:1:-0.48,-0.48,-0.48 22 50985471 rs193226068 G A 100 PASS THETA=0.0021;AA=G;AN=2184;ERATE=0.0046;RSQ=0.2975;VT=SNP;AVGPOST=0.9024;LDAF=0.0592;SNPSOURCE=LOWCOV;AC=39;AF=0.02;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.05;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.18,-0.47,-2.41 0|0:0.25:-0.48,-0.48,-0.48 0|0:0.1:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 22 50985500 rs138547521 C T 100 PASS LDAF=0.077;AA=C;RSQ=0.2844;AN=2184;AC=45;VT=SNP;ERATE=0.0079;SNPSOURCE=LOWCOV;THETA=0.0097;AVGPOST=0.8696;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.05;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.68,-4.7 0|0:0.1:-0.48,-0.48,-0.48 0|0:0.45:-0.48,-0.48,-0.48 1|0:0.75:-0.48,-0.48,-0.48 1|0:0.75:-0.48,-0.48,-0.48 22 50985669 rs185618396 G A 100 PASS ERATE=0.0013;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.9901;VT=SNP;AC=10;SNPSOURCE=LOWCOV;RSQ=0.4874;LDAF=0.0082;AF=0.0046;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.18,-0.48,-2.49 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.65,-4.7 22 50985703 rs5770882 A G 100 PASS AVGPOST=0.9477;AA=G;AN=2184;VT=SNP;LDAF=0.8224;SNPSOURCE=LOWCOV;ERATE=0.0053;AC=1822;THETA=0.0003;RSQ=0.8662;AF=0.83;ASN_AF=0.97;AMR_AF=0.78;AFR_AF=0.9;EUR_AF=0.72 GT:DS:GL 1|1:2:-5,-0.72,-0.09 1|1:1.8:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:1:-0.87,-0.39,-0.34 1|1:2:-5,-0.71,-0.1 22 50985732 rs5770883 C T 100 PASS ERATE=0.0005;AA=C;THETA=0.0032;RSQ=0.9628;AN=2184;AC=404;LDAF=0.1864;VT=SNP;AVGPOST=0.984;SNPSOURCE=LOWCOV;AF=0.18;ASN_AF=0.39;AMR_AF=0.21;AFR_AF=0.07;EUR_AF=0.09 GT:DS:GL 0|0:0:-0.05,-1,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 1|0:1:-0.87,-0.39,-0.34 1|0:1:-5,-1.02,-0.04 22 50985788 rs6009987 C G 100 PASS AA=G;AN=2184;AC=46;ERATE=0.0032;VT=SNP;THETA=0.0006;LDAF=0.0313;AVGPOST=0.9733;SNPSOURCE=LOWCOV;RSQ=0.6415;AF=0.02;AMR_AF=0.01;AFR_AF=0.06;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.67,-4.7 0|0:0:-0.21,-0.46,-1.35 0|0:0:-0.48,-0.48,-0.48 0|0:0.45:-0.17,-0.5,-2.82 0|0:0.45:-0.48,-0.48,-0.48 22 50985832 rs140088445 C T 100 PASS RSQ=0.6705;AN=2184;AC=16;AVGPOST=0.9935;VT=SNP;AA=c;LDAF=0.0085;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0007;AF=0.01;AMR_AF=0.03;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.18,-0.48,-2.47 0|0:0:-0.19,-0.45,-2.18 0|1:0.6:-0.48,-0.48,-0.48 0|0:0:-0.08,-0.75,-5 0|0:0:-0.19,-0.46,-2.97 22 50985872 rs150330569 G T 100 PASS RSQ=0.4571;LDAF=0.0152;THETA=0.0026;ERATE=0.0013;AC=18;AA=g;AN=2184;AVGPOST=0.9797;VT=SNP;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.16,-0.51,-2.89 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.06,-0.89,-5 0|0:0:-0.18,-0.47,-3.06 22 50985875 rs6009988 T C 100 PASS THETA=0.0047;AN=2184;AC=569;VT=SNP;RSQ=0.9238;AA=c;LDAF=0.2655;ERATE=0.0018;SNPSOURCE=LOWCOV;AVGPOST=0.9622;AF=0.26;ASN_AF=0.28;AMR_AF=0.24;AFR_AF=0.31;EUR_AF=0.22 GT:DS:GL 0|0:0:-0.35,-0.41,-0.78 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.35:-0.11,-0.66,-4.4 0|1:1.45:-3.34,-0.46,-0.18 22 50985895 rs137973244 C T 100 PASS ERATE=0.0014;AVGPOST=0.987;LDAF=0.0191;THETA=0.0014;RSQ=0.7124;AN=2184;VT=SNP;AC=34;AA=c;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.06;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.05:-0.19,-0.46,-2.36 0|0:0:-0.19,-0.46,-2.96 22 50986312 . TAACCCCAGTCCC T 287 PASS THETA=0.0026;AN=2184;AVGPOST=0.9702;VT=INDEL;RSQ=0.7864;AC=109;ERATE=0.0007;LDAF=0.0588;AF=0.05;AMR_AF=0.06;AFR_AF=0.03;EUR_AF=0.09 GT:DS:GL 0|0:0:0,0,0 0|0:0.1:0,0,0 0|0:0.1:0,0,0 0|0:0:0,0,0 0|1:1:0,0,0 22 50986360 rs4575819 T C 100 PASS AC=725;ERATE=0.0277;AVGPOST=0.7063;AN=2184;LDAF=0.359;VT=SNP;AA=-;THETA=0.0025;SNPSOURCE=LOWCOV;RSQ=0.5109;AF=0.33;ASN_AF=0.45;AMR_AF=0.29;AFR_AF=0.26;EUR_AF=0.31 GT:DS:GL 0|1:0.95:-0.48,-0.48,-0.48 0|1:1.05:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.11,-0.66,-4.4 22 50986379 rs5770885 A T 100 PASS RSQ=0.3577;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0878;AA=-;AC=75;ERATE=0.0049;SNPSOURCE=LOWCOV;AVGPOST=0.8682;AF=0.03;ASN_AF=0.04;AMR_AF=0.03;AFR_AF=0.05;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.48,-0.48,-0.48 0|0:0.15:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0.48,-0.48,-0.48 0|0:0.15:-0.12,-0.61,-4.7 22 50986647 rs62239508 G A 100 PASS AVGPOST=0.9985;LDAF=0.0524;AA=G;AN=2184;RSQ=0.9877;VT=SNP;THETA=0.0037;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=114;AF=0.05;ASN_AF=0.12;AMR_AF=0.05;AFR_AF=0.0041;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.22,-0.42,-1.72 0|0:0:-0.07,-0.86,-5 22 50987175 rs116500907 G T 100 PASS THETA=0.0048;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=83;VT=SNP;RSQ=0.9419;ERATE=0.0008;LDAF=0.0392;AVGPOST=0.9937;AF=0.04;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.09;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.01,-1.77,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0:-0.22,-0.46,-1.25 0|0:0:-0.1,-0.69,-4.7 0|0:0:-0.19,-0.45,-2.14 22 50987273 . G T 100 PASS ERATE=0.0005;AVGPOST=0.9977;AA=G;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0019;SNPSOURCE=EXOME;RSQ=0.4679;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.65,-5 0|0:0:-0.19,-0.45,-2.21 0|0:0.05:-0.48,-0.48,-0.48 0|0:0:-0.05,-0.94,-5 0|0:0:-0.09,-0.71,-5 22 50987287 rs5770886 A G 100 PASS AC=767;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;RSQ=0.9283;AVGPOST=0.955;LDAF=0.3524;THETA=0.0003;ERATE=0.0071;AF=0.35;ASN_AF=0.41;AMR_AF=0.37;AFR_AF=0.54;EUR_AF=0.18 GT:DS:GL 0|0:0:-0,-2.4,-5 0|0:0.1:-0.21,-0.43,-1.9 0|0:0.05:-0.48,-0.48,-0.48 1|0:1:-2.16,-0,-5 1|1:2:-5,-0.69,-0.1 22 50987353 . T C 100 PASS LDAF=0.0021;AA=T;AN=2184;THETA=0.0082;VT=SNP;SNPSOURCE=EXOME;RSQ=0.5671;ERATE=0.0003;AC=3;AVGPOST=0.9974;AF=0.0014;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.31,-5 0|0:0:-0.22,-0.46,-1.29 0|0:0:-0.19,-0.45,-2.19 0|0:0:-0.05,-0.96,-5 0|0:0:-0.05,-0.95,-5 22 50987558 rs192009182 C T 100 PASS ERATE=0.0004;LDAF=0.0009;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.5516;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.62,-2.41 0|0:0:-0.23,-0.46,-1.23 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50987601 rs142853011 A T 100 PASS RSQ=0.9382;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;ASN_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.62,-2.39 0|0:0:-0.22,-0.46,-1.26 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50987690 rs147168342 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0017;LDAF=0.0014;ERATE=0.0003;AC=3;AVGPOST=0.9999;RSQ=0.9693;AF=0.0014;AFR_AF=0.002;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0.12,-0.63,-3.25 0|0:0:-0.11,-0.64,-2.41 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50987825 rs117231091 C T 100 PASS LDAF=0.0053;RSQ=0.9723;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0013;AC=11;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-2.5,-5 0|0:0:-0,-2.1,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50987843 rs61746062 C T 100 PASS AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9957;VT=SNP;LDAF=0.0758;THETA=0.0016;ERATE=0.0003;AC=164;AVGPOST=0.9992;AF=0.08;AMR_AF=0.04;AFR_AF=0.17;EUR_AF=0.09 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-3.14,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50987970 . C A 100 PASS THETA=0.0021;AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50987990 rs77297390 G A 100 PASS THETA=0.0014;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=41;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0188;AF=0.02;AMR_AF=0.01;AFR_AF=0.08;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50988016 . A G 100 PASS AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9101;AA=A;SNPSOURCE=EXOME;LDAF=0.002;AC=4;THETA=0.0097;ERATE=0.0006;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50988038 rs115466691 C T 100 PASS AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0023;AC=5;RSQ=1;ERATE=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50988062 rs140519 G T 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;ERATE=0.0024;AVGPOST=0.9967;VT=SNP;AC=956;RSQ=0.995;LDAF=0.4374;AF=0.44;ASN_AF=0.58;AMR_AF=0.44;AFR_AF=0.2;EUR_AF=0.48 GT:DS:GL 1|1:2:-5,-5,0 1|1:2:-5,-2.13,-0 0|0:0:-0,-2.21,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50988105 rs36062310 G A 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9684;THETA=0.0005;VT=SNP;LDAF=0.0185;ERATE=0.0003;AVGPOST=0.9984;AC=39;AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.04 GT:DS:GL 0|0:0:-0,-4.7,-5 0|0:0:-0.12,-0.62,-2.42 0|0:0.45:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50988141 rs115170030 G A 100 PASS ERATE=0.0004;LDAF=0.0071;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.9701;THETA=0.0006;AC=15;AVGPOST=0.9995;AF=0.01;AFR_AF=0.03 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.02,-1.28,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:0,-5,-5 0|0:0:0,-5,-5 22 50988183 . G A 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=G;AN=2184;RSQ=0.6586;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-4,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.2,-0.48,-1.42 0|0:0:-0,-2.75,-5 0|0:0:-0,-4.7,-5 22 50988193 rs131779 A G 100 PASS THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9956;AC=1292;ERATE=0.002;LDAF=0.5912;RSQ=0.9918;AF=0.59;ASN_AF=0.59;AMR_AF=0.53;AFR_AF=0.57;EUR_AF=0.64 GT:DS:GL 1|1:2:-5,-3.8,-0 1|1:2:-5,-2.22,-0 0|0:0:-0.13,-0.61,-2.22 0|0:0:-0,-3.05,-5 0|1:1:-5,0,-5 22 50988317 rs148213739 C T 100 PASS AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9335;AVGPOST=0.9997;VT=SNP;LDAF=0.002;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.73,-5 0|0:0:-0,-4,-5 0|0:0:-0,-3.42,-5 0|0:0:-0.11,-0.65,-5 0|0:0:-0,-4.4,-5 22 50988352 . C A 100 PASS RSQ=0.9049;AA=C;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-2.9,-5 0|0:0:-0,-3.52,-5 0|0:0:-0,-3.32,-5 0|0:0:-0,-2.78,-5 0|0:0:-0,-4.4,-5 22 50988376 rs141222336 T C 100 PASS SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;RSQ=0.8725;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.17,-5 0|0:0:-0,-2.46,-5 0|0:0:-0,-3.25,-5 0|0:0:-0,-2.03,-5 0|0:0:0,-5,-5 22 50988413 . C G 100 PASS AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7819;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002 GT:DS:GL 0|0:0:-0,-2.51,-5 0|0:0:-0.07,-0.82,-3.49 0|0:0:-0.01,-1.76,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-2.49,-5 22 50988447 rs148520734 A G 100 PASS AVGPOST=0.9986;AN=2184;THETA=0.0005;LDAF=0.0015;VT=SNP;RSQ=0.6383;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AF=0.0014;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.62,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-3.05,-5 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-3.44,-5 22 50988455 rs185909209 G A 100 PASS THETA=0.0004;AA=G;AN=2184;AC=8;VT=SNP;RSQ=0.9511;LDAF=0.0039;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0037;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.004 GT:DS:GL 0|0:0:-0.01,-1.54,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.44,-5 0|0:0:-0.1,-0.68,-4.7 0|0:0:-0,-4.4,-5 22 50988512 rs189247943 C T 100 PASS AA=C;RSQ=0.7797;THETA=0.0047;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;EUR_AF=0.0013 GT:DS:GL 0|0:0:-0.02,-1.44,-5 0|0:0:-0.01,-1.79,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-2.76,-5 22 50988565 rs142775165 T G 100 PASS AA=T;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.7784;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.28,-5 0|0:0:-0,-3.3,-5 0|0:0:-0.48,-0.48,-0.48 0|0:0:-0,-3.07,-5 22 50988648 . CCT C 150 PASS AC=17;THETA=0.0004;AN=2184;VT=INDEL;ERATE=0.0008;RSQ=0.795;LDAF=0.0081;AVGPOST=0.995;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0026 GT:DS:GL 0|0:0:0,-0.6,-8.5 0|0:0.05:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,0,0 22 50988691 rs150650249 C T 100 PASS THETA=0.0004;AN=2184;VT=SNP;AC=10;AA=c;SNPSOURCE=LOWCOV;RSQ=0.8732;ERATE=0.0006;LDAF=0.0051;AVGPOST=0.9982;AF=0.0046;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.004 GT:DS:GL 0|0:0:-0,-2.29,-5 0|0:0:-0.07,-0.81,-4.22 0|0:0:-0.03,-1.24,-5 0|0:0:-0.17,-0.5,-2.84 0|0:0:-0.06,-0.89,-5 22 50988695 rs5770887 T C 100 PASS RSQ=0.9926;AN=2184;VT=SNP;AA=c;LDAF=0.2227;AC=488;AVGPOST=0.997;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.22;ASN_AF=0.28;AMR_AF=0.23;AFR_AF=0.28;EUR_AF=0.14 GT:DS:GL 0|0:0:-0,-2.3,-5 0|0:0:-0.04,-1.02,-5 0|0:0:-0.02,-1.29,-5 1|0:0.95:-0.17,-0.5,-2.84 1|1:2:-5,-0.97,-0.05 22 50988703 rs182240520 C T 100 PASS LDAF=0.0024;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;AC=5;SNPSOURCE=LOWCOV;RSQ=0.8405;ERATE=0.0003;THETA=0.0003;AF=0.0023;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.64,-5 0|0:0.05:-1.28,-0.02,-3.24 0|0:0:-0.07,-0.83,-5 0|0:0:-0.18,-0.47,-2.43 0|0:0:-0.06,-0.89,-5 22 50988939 rs139741192 C T 100 PASS ERATE=0.0005;LDAF=0.0027;AA=C;AN=2184;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7115;THETA=0.0003;AF=0.0018;ASN_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.74,-5 0|0:0:-0.12,-0.62,-3.24 0|0:0:-0.08,-0.79,-4.7 0|0:0:-0,-2.26,-5 0|0:0:-0.02,-1.33,-5 22 50988957 rs143801193 G C 100 PASS LDAF=0.0027;THETA=0.0002;AA=G;AN=2184;AC=6;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9318;ERATE=0.0003;AVGPOST=0.9995;AF=0.0027;AFR_AF=0.01 GT:DS:GL 0|0:0:-0.01,-1.79,-5 0|0:0:-0.09,-0.75,-3.92 0|0:0:-0.06,-0.86,-5 0|0:0:-0,-2.25,-5 0|0:0:-0.01,-1.56,-5 22 50989073 rs146834843 C T 100 PASS ERATE=0.0004;LDAF=0.0013;AA=C;AN=2184;RSQ=0.6983;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.71,-5 0|0:0:-0,-2,-5 0|0:0:-0.12,-0.61,-3.12 0|0:0:-0,-2.1,-5 0|0:0:-0.12,-0.63,-3.92 22 50989147 rs187124817 C T 100 PASS AA=C;AN=2184;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.8272;AF=0.0009;EUR_AF=0.0026 GT:DS:GL 0|0:0:-0.01,-1.58,-5 0|0:0:-0.04,-1.01,-5 0|0:0:-0,-1.96,-5 0|0:0:-0.02,-1.34,-5 0|0:0:-0.01,-1.55,-5 22 50989148 rs114357127 G A 100 PASS AC=12;RSQ=0.9628;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0055;AF=0.01;AMR_AF=0.01;AFR_AF=0.02 GT:DS:GL 0|0:0:-0.01,-1.69,-5 0|0:0:-0.02,-1.26,-5 0|0:0:-0,-2.19,-5 0|0:0:-0.02,-1.42,-5 0|0:0:-0.01,-1.57,-5 22 50989197 rs41281529 C T 100 PASS AA=C;RSQ=0.9959;AN=2184;LDAF=0.1352;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=294;THETA=0.0003;AF=0.13;ASN_AF=0.12;AMR_AF=0.09;AFR_AF=0.24;EUR_AF=0.1 GT:DS:GL 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.03,-5 0|0:0:-0,-2.18,-5 0|0:0:-0.11,-0.65,-4.1 0|0:0:-0.04,-1.09,-5 22 50989211 rs140658934 G T 100 PASS AA=g;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7073;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.01,-1.8,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0.03,-1.18,-5 0|0:0:-0.04,-1.09,-5 22 50989286 rs7291641 C T 100 PASS AVGPOST=0.9994;THETA=0.0004;AA=T;AN=2184;VT=SNP;AC=135;RSQ=0.9965;LDAF=0.0615;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.06;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.21;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.03,-1.19,-5 0|0:0:-0,-3.44,-5 0|0:0:-0,-1.97,-5 0|0:0:-0,-1.95,-5 0|0:0:-0,-2.36,-5 22 50989326 rs131778 A G 100 PASS AC=1094;THETA=0.0004;AA=G;AN=2184;RSQ=0.9977;LDAF=0.5001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.5;ASN_AF=0.59;AMR_AF=0.46;AFR_AF=0.42;EUR_AF=0.5 GT:DS:GL 1|1:2:-5,-1.18,-0.03 1|1:2:-5,-0.98,-0.05 0|0:0:-0.01,-1.56,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.68,-5 22 50989466 . CTTG C 360 PASS ERATE=0.0004;RSQ=0.9785;AN=2184;AC=37;LDAF=0.0173;VT=INDEL;AVGPOST=0.9991;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.0013 GT:DS:GL 0|0:0:0,-2.1,-47 0|0:0:0,-0.3,-6.5 0|0:0:0,0,0 0|0:0.1:0,-0.3,-6.7 0|0:0:0,0,0 22 50989471 rs9628208 T C 100 PASS AVGPOST=1;AA=C;AN=2184;AC=133;VT=SNP;LDAF=0.0608;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;THETA=0.0003;AF=0.06;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.21;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-3.1,-5 0|0:0:-0,-3.25,-5 0|0:0:-0.05,-0.93,-5 0|0:0:-0,-4.7,-5 22 50989525 rs144557252 G T 100 PASS THETA=0.0004;AA=G;AN=2184;LDAF=0.0018;VT=SNP;RSQ=0.9523;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01 GT:DS:GL 0|0:0:-0,-2.09,-5 0|0:0:-0.02,-1.37,-5 0|0:0:-0,-3.47,-5 0|0:0:-0.03,-1.2,-5 0|0:0:-0,-2.4,-5 22 50989537 rs41281531 G A 100 PASS ERATE=0.0005;RSQ=0.9911;AC=126;LDAF=0.0584;AA=G;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.06;AMR_AF=0.03;AFR_AF=0.12;EUR_AF=0.07 GT:DS:GL 0|0:0:-0.01,-1.78,-5 0|0:0:-0.01,-1.76,-5 0|0:0:-0,-2.96,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0.01,-1.88,-5 22 50989678 rs6009989 A G 100 PASS ERATE=0.0004;AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=139;LDAF=0.0636;THETA=0.0003;RSQ=0.9962;AF=0.06;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.21;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.06,-0.9,-5 0|0:0:-0.01,-1.61,-5 22 50989742 rs55829948 C T 100 PASS AA=C;AN=2184;VT=SNP;AC=10;RSQ=0.8956;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0051;THETA=0.0003;AF=0.0046;AFR_AF=0.002;EUR_AF=0.01 GT:DS:GL 0|0:0:-0.16,-0.52,-3.12 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.05,-0.99,-5 0|0:0:-0.06,-0.88,-5 22 50989772 rs146628983 C T 100 PASS AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.07,-0.86,-5 0|0:0:0,-5,-5 0|0:0:0,-5,-5 0|0:0:-0.01,-1.69,-5 0|0:0:-0.03,-1.12,-5 22 50989824 rs6009990 C T 100 PASS AA=T;AN=2184;RSQ=0.996;AC=133;LDAF=0.0611;VT=SNP;AVGPOST=0.9993;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.06;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.21;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.18,-0.47,-2.45 0|0:0:-0,-4.4,-5 0|0:0:0,-5,-5 0|0:0:-0.03,-1.14,-5 0|0:0:-0.04,-1.09,-5 22 50989865 rs191140048 G A 100 PASS THETA=0.0004;AA=G;AN=2184;RSQ=0.6023;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017 GT:DS:GL 0|0:0:-0.05,-0.95,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-3.4,-5 0|0:0:-0,-2.28,-5 0|0:0:-0.02,-1.39,-5 22 50989932 rs183025747 G A 100 PASS AVGPOST=0.9977;AA=G;AN=2184;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;THETA=0.0003;RSQ=0.5459;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041 GT:DS:GL 0|0:0:-0.05,-0.94,-5 0|0:0:-0.12,-0.62,-2.4 0|0:0:-0.05,-0.99,-5 0|0:0:-0.01,-1.83,-5 0|0:0:-0.06,-0.89,-5 22 50990018 rs148832643 A G 100 PASS THETA=0.0004;AN=2184;VT=SNP;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;RSQ=0.833;ERATE=0.0003;AVGPOST=0.9995;AC=2;AF=0.0009;ASN_AF=0.0035 GT:DS:GL 0|0:0:-0,-2.1,-5 0|0:0:-0,-4.22,-5 0|0:0:-0,-2.83,-5 0|0:0:-0.03,-1.17,-5 0|0:0:-0,-3.17,-5 22 50990070 rs11330741 AC A 416 PASS ERATE=0.0005;AN=2184;RSQ=0.9895;VT=INDEL;AC=133;LDAF=0.0605;AVGPOST=0.9984;THETA=0.0003;AF=0.06;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.21;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-2.7,-40.5 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-4.5 0|0:0:0,0,0 22 50990082 rs11427965 G GT 488 PASS ERATE=0.0005;AN=2184;VT=INDEL;AC=133;AVGPOST=0.998;RSQ=0.9867;LDAF=0.0604;THETA=0.0003;AF=0.06;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.21;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-2.7,-35.1 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-3.9 0|0:0:0,0,0 22 50990086 rs60414910 A G 100 PASS RSQ=0.9917;AN=2184;AC=133;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.0602;AF=0.06;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.21;EUR_AF=0.03 GT:DS:GL 0|0:0:-0,-2.98,-5 0|0:0:-0,-4.7,-5 0|0:0:-0,-2.84,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-4.22,-5 22 50990086 . A AG 516 PASS ERATE=0.0004;AVGPOST=0.9985;AN=2184;VT=INDEL;AC=133;THETA=0.0005;LDAF=0.0605;RSQ=0.9903;AF=0.06;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.21;EUR_AF=0.03 GT:DS:GL 0|0:0:0,-2.7,-37.8 0|0:0:0,0,0 0|0:0:0,0,0 0|0:0:0,-0.3,-4.2 0|0:0:0,0,0 22 50990125 rs186249806 T C 100 PASS THETA=0.0004;AA=T;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;RSQ=0.7318;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028 GT:DS:GL 0|0:0:-0,-3.14,-5 0|0:0:-0,-3.62,-5 0|0:0:-0,-3.85,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-2.1,-5 22 50990178 rs190081005 G A 100 PASS RSQ=0.8593;THETA=0.0002;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0045;AF=0.0041;AMR_AF=0.01;EUR_AF=0.01 GT:DS:GL 0|0:0:-0,-3.55,-5 0|0:0:-0.01,-1.88,-5 0|0:0.45:-0.02,-1.27,-5 0|0:0:-0,-2.48,-5 0|0:0:-0.01,-1.91,-5 22 50990216 rs73891280 C T 100 PASS AA=C;THETA=0.0004;AN=2184;RSQ=0.9899;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=71;ERATE=0.0003;LDAF=0.0327;AF=0.03;AMR_AF=0.01;AFR_AF=0.1;EUR_AF=0.02 GT:DS:GL 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50994505 rs12160127 A C 100 PASS ERATE=0.0004;AN=2184;VT=SNP;AVGPOST=0.9976;THETA=0.0006;AA=A;LDAF=0.0126;RSQ=0.9217;SNPSOURCE=LOWCOV;AC=25;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05 GT:DS:GL 0|0:0:-0.03,-1.21,-5 0|0:0:-0.04,-1.05,-5 0|0:0:-0.07,-0.82,-5 0|0:0:-0.18,-0.48,-2.2 0|0:0:-0.21,-0.43,-1.82 22 50994522 rs116679391 G A 100 PASS THETA=0.0004;AA=G;AN=2184;AC=20;LDAF=0.0098;VT=SNP;RSQ=0.9395;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.01;AFR_AF=0.04 GT:DS:GL 0|0:0:-0.03,-1.15,-5 0|0:0:-0.02,-1.44,-5 0|0:0:-0,-1.95,-5 0|0:0:-0.1,-0.67,-3.92 0|0:0:-0.08,-0.79,-5 22 50994608 rs6009994 A G 100 PASS RSQ=0.9882;AA=G;AN=2184;THETA=0.0008;VT=SNP;AC=118;SNPSOURCE=LOWCOV;LDAF=0.0543;ERATE=0.0007;AVGPOST=0.9982;AF=0.05;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.18;EUR_AF=0.02 GT:DS:GL 0|0:0:-0.1,-0.69,-4.7 0|0:0:0,-5,-5 0|0:0:-0,-4.7,-5 0|0:0:-0.1,-0.69,-4.1 0|0:0:-0,-3.15,-5 22 50994609 rs6009925 C T 100 PASS 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LDAF=0.0088;AA=T;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=19;RSQ=0.9634;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.04,-5 0|0:0:-0,-2.86,-5 0|0:0:-0,-3.55,-5 0|0:0:-0.02,-1.41,-5 0|0:0:-0,-2.67,-5 22 50997119 rs6010005 G C 100 PASS AVGPOST=1;AA=G;AN=2184;VT=SNP;LDAF=0.0631;AC=138;SNPSOURCE=LOWCOV;RSQ=0.9997;ERATE=0.0003;THETA=0.0003;AF=0.06;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.22;EUR_AF=0.03 GT:DS:GL 0|0:0:-0.02,-1.42,-5 0|0:0:-0.04,-1.03,-5 0|0:0:-0,-3.55,-5 0|0:0:-0,-2.3,-5 0|0:0:-0,-2.69,-5 22 50997145 rs9628209 G C 100 PASS RSQ=0.9958;AA=G;AN=2184;LDAF=0.0467;VT=SNP;SNPSOURCE=LOWCOV;AC=102;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.05;AMR_AF=0.02;AFR_AF=0.16;EUR_AF=0.02 GT:DS:GL 0|0:0:-0,-2.01,-5 0|0:0:-0.01,-1.54,-5 0|0:0:-0,-2.48,-5 0|0:0:-0,-2.07,-5 0|0:0:-0,-2.69,-5 22 50997178 rs6009928 A G 100 PASS 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