22	50300166	rs182170314	C	T	100	PASS	LDAF=0.0041;AA=C;THETA=0.0004;AN=2184;AC=8;AVGPOST=0.9981;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7909;ERATE=0.0007;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.16,-0.52,-3.09	0|0:0.05:-0.21,-0.46,-1.36	0|0:0:-0.2,-0.44,-1.98	0|0:0:-0.06,-0.88,-5	0|0:0:-0.01,-1.9,-5
22	50300527	rs114659385	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;AC=23;RSQ=0.942;LDAF=0.0113;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.08,-5	0|0:0:-0.07,-0.84,-4.4	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.91,-5	0|0:0:-0.05,-0.93,-5
22	50301340	rs137922648	A	C	100	PASS	AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50301664	rs9627644	T	C	100	PASS	THETA=0.0009;AA=C;LDAF=0.2078;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.999;AC=455;AF=0.21;ASN_AF=0.09;AMR_AF=0.09;AFR_AF=0.62;EUR_AF=0.09	GT:DS:GL	0|0:0:-0,-4.4,-5	0|0:0:-0,-4,-5	1|0:1:-5,-0,-3.44	0|0:0:-0,-4.4,-5	0|0:0:-0,-4.22,-5
22	50302834	rs185259665	C	T	100	PASS	AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-2.4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50303006	.	A	G	100	PASS	AVGPOST=1;AN=2184;THETA=0.0008;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50303149	rs56810176	G	C	100	PASS	AA=G;AN=2184;AC=224;LDAF=0.1025;AVGPOST=0.9997;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9985;AF=0.1;ASN_AF=0.06;AMR_AF=0.04;AFR_AF=0.26;EUR_AF=0.06	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.04,-1.04,-5	1|0:1:-1.55,-0.01,-3.92	0|0:0:-0.19,-0.46,-2.42	0|0:0:-0,-4.4,-5
22	50303530	rs9616204	T	C	100	PASS	LDAF=0.2248;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AC=492;RSQ=0.9998;ERATE=0.0003;AVGPOST=0.9999;AF=0.23;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.42;EUR_AF=0.21	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	1|0:1:-5,0,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50303554	.	T	C	100	PASS	AVGPOST=1;LDAF=0.0004;THETA=0.0004;AA=T;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50303567	rs140835842	G	A	100	PASS	SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0027;RSQ=0.854;LDAF=0.0011;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50305113	rs75834079	C	T	100	PASS	AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;AC=78;LDAF=0.0358;RSQ=0.9956;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;AF=0.04;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.38,-5	0|0:0:-0.05,-0.97,-5	0|0:0:-0.07,-0.82,-5	0|0:0:-0.01,-1.69,-5	0|0:0:-0.11,-0.63,-4.7
22	50305361	rs183884936	C	T	100	PASS	AA=C;AN=2184;VT=SNP;AVGPOST=0.9976;THETA=0.0006;RSQ=0.5821;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=3;ERATE=0.0007;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0.2,-0.44,-2.05	0|0:0:-0.19,-0.45,-2.16	0|0:0:-0.1,-0.67,-3.92	0|0:0.05:-0.07,-0.81,-5
22	50305362	rs62233159	G	A	100	PASS	THETA=0.0015;AA=G;AN=2184;VT=SNP;RSQ=0.977;SNPSOURCE=LOWCOV;LDAF=0.0795;ERATE=0.0006;AVGPOST=0.9958;AC=174;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.13	GT:DS:GL	0|0:0:-0.11,-0.67,-4.4	0|0:0:-0.21,-0.43,-1.96	0|0:0:-0.2,-0.44,-1.98	0|0:0:-0.1,-0.69,-4.1	0|0:0:-0.07,-0.84,-5
22	50305502	rs184507994	C	T	100	PASS	ERATE=0.0005;LDAF=0.0021;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AC=2;AVGPOST=0.9974;RSQ=0.5449;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0,-2.05,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.06,-0.9,-5	0|0:0:-0,-2.88,-5
22	50306847	rs114715263	G	A	100	PASS	AC=17;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9423;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.0082;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0.04,-1.06,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50307162	.	C	T	100	PASS	AA=C;AN=2184;VT=SNP;RSQ=0.889;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50308012	rs190836517	C	G	100	PASS	ERATE=0.0004;THETA=0.0015;AA=C;AN=2184;LDAF=0.0037;RSQ=0.5663;VT=SNP;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9955;AF=0.0018;AFR_AF=0.002;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.07,-0.84,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.09,-0.72,-4.7	0|0:0:-0.18,-0.47,-3.05
22	50308150	rs149583173	G	C	100	PASS	ERATE=0.0004;RSQ=0.7714;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0011;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.08,-5	0|0:0:-0.12,-0.63,-4.1	0|0:0:-0.12,-0.63,-4.1	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.64,-4.1
22	50308817	rs139736869	T	G	100	PASS	ERATE=0.0004;LDAF=0.0009;AA=T;AN=2184;VT=SNP;RSQ=0.6193;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0.01,-1.54,-5	0|0:0:-0.01,-1.78,-5	0|0:0:-0.09,-0.72,-4.7	0|0:0:-0.02,-1.29,-5
22	50308888	rs8142631	G	A	100	PASS	ERATE=0.0004;AC=28;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.013;SNPSOURCE=LOWCOV;THETA=0.002;RSQ=0.9846;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.01,-1.49,-5	0|0:0:-0.08,-0.78,-4.7	0|0:0:-0.19,-0.46,-2.04	0|0:0:-0.19,-0.46,-2.16
22	50309446	rs4074304	G	A	100	PASS	ERATE=0.0005;LDAF=0.2191;AN=2184;VT=SNP;AVGPOST=0.9953;RSQ=0.9904;AA=A;SNPSOURCE=LOWCOV;THETA=0.0007;AC=476;AF=0.22;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.4;EUR_AF=0.21	GT:DS:GL	0|0:0:-0.01,-1.67,-5	0|0:0:-0.02,-1.28,-5	1|0:1:-4.1,-0,-2.7	0|0:0:-0.02,-1.45,-5	0|0:0:-0.04,-1.07,-5
22	50309804	rs61465012	G	A	100	PASS	AC=7;AA=G;AN=2184;AVGPOST=0.9947;THETA=0.0005;VT=SNP;LDAF=0.0059;ERATE=0.0019;RSQ=0.6322;SNPSOURCE=LOWCOV;AF=0.0032;AFR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0,-4.7,-5	0|0:0.6:-1.68,-0.01,-5	0|0:0:-0.06,-0.89,-5	0|0:0:-0,-1.95,-5
22	50310254	rs75839612	G	A	100	PASS	ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;LDAF=0.0097;SNPSOURCE=LOWCOV;AC=21;RSQ=0.9562;AF=0.01;AMR_AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.01,-1.77,-5	0|0:0:-0.01,-1.76,-5	0|0:0:-0.03,-1.12,-5	0|0:0:-0.01,-1.88,-5
22	50310878	.	G	GC	305	PASS	THETA=0.0009;ERATE=0.0004;RSQ=0.9698;AN=2184;AC=460;VT=INDEL;AVGPOST=0.9859;LDAF=0.2088;AF=0.21;ASN_AF=0.12;AMR_AF=0.14;AFR_AF=0.37;EUR_AF=0.21	GT:DS:GL	0|0:0:0,-0.9,-11.7	1|0:0.85:0,0,0	1|0:0.95:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0
22	50311206	rs11703207	C	T	100	PASS	AA=C;AN=2184;RSQ=0.9753;VT=SNP;THETA=0.0006;LDAF=0.0771;SNPSOURCE=LOWCOV;AC=170;AVGPOST=0.9955;ERATE=0.0006;AF=0.08;ASN_AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.13	GT:DS:GL	0|0:0:-0.01,-1.5,-5	1|0:1:-5,-0.7,-0.1	0|0:0:-0.12,-0.63,-4	0|0:0:-0.19,-0.47,-2.08	0|0:0:-0.11,-0.63,-4
22	50311596	rs9627794	G	A	100	PASS	AC=316;AA=G;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.9433;AVGPOST=0.9833;SNPSOURCE=LOWCOV;ERATE=0.0022;LDAF=0.1459;AF=0.14;ASN_AF=0.1;AMR_AF=0.12;AFR_AF=0.22;EUR_AF=0.14	GT:DS:GL	0|0:0:-0.06,-0.91,-5	1|0:0.9:-0.46,-0.47,-0.51	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.09,-0.74,-5	0|0:0:-0.18,-0.46,-3.04
22	50311652	rs116475114	G	C	100	PASS	AA=g;AC=334;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0065;SNPSOURCE=LOWCOV;LDAF=0.1574;AVGPOST=0.9287;RSQ=0.7748;AF=0.15;ASN_AF=0.09;AMR_AF=0.13;AFR_AF=0.23;EUR_AF=0.16	GT:DS:GL	0|0:0:-0.05,-1.01,-5	1|0:0.85:-0.21,-0.46,-1.35	1|0:0.8:-0.48,-0.48,-0.48	0|0:0:-0.12,-0.63,-4.22	0|0:0:-0.05,-0.98,-5
22	50311726	rs13340054	G	A	100	PASS	THETA=0.0032;AA=g;RSQ=0.9563;AN=2184;ERATE=0.0009;VT=SNP;AC=216;SNPSOURCE=LOWCOV;AVGPOST=0.9898;LDAF=0.1008;AF=0.1;ASN_AF=0.05;AMR_AF=0.05;AFR_AF=0.24;EUR_AF=0.06	GT:DS:GL	0|0:0:-0.04,-1.02,-5	0|0:0:-0.48,-0.48,-0.48	1|0:0.95:-0.19,-0.45,-2.15	0|0:0:-0.06,-0.87,-5	0|0:0:-0.11,-0.65,-4.7
22	50312454	rs139081265	C	T	100	PASS	THETA=0.0026;AA=C;AN=2184;VT=SNP;RSQ=0.5406;AVGPOST=0.9558;LDAF=0.0393;SNPSOURCE=LOWCOV;ERATE=0.0029;AC=60;AF=0.03;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.09;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.45,-2.18	0|0:0.05:-0.48,-0.48,-0.48	1|0:0.75:-2.33,-0.25,-0.36	0|0:0:-0.19,-0.46,-2.16
22	50312857	rs185875841	A	C	100	PASS	THETA=0.0093;AVGPOST=1;AN=2184;VT=SNP;AA=A;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50313124	rs9616385	C	T	100	PASS	AA=C;AN=2184;AC=474;THETA=0.0005;VT=SNP;RSQ=0.9986;SNPSOURCE=LOWCOV;LDAF=0.2168;ERATE=0.0003;AVGPOST=0.9995;AF=0.22;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.4;EUR_AF=0.21	GT:DS:GL	0|0:0:-0,-4.4,-5	1|0:1:-5,-0.01,-1.59	0|1:1:-5,0,-5	0|0:0:-0.01,-1.63,-5	0|0:0:-0,-3.24,-5
22	50313438	rs9616388	T	C	100	PASS	AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=477;VT=SNP;RSQ=0.9998;LDAF=0.218;THETA=0.0051;ERATE=0.0003;AVGPOST=0.9999;AF=0.22;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.4;EUR_AF=0.21	GT:DS:GL	0|0:0:0,-5,-5	1|0:1:-5,0,-5	0|1:1:-5,0,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50313614	rs190455134	C	T	100	PASS	RSQ=0.7343;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-2.27,-5	0|0:0:0,-5,-5	0|0:0:-0,-1.99,-5	0|0:0:-0,-4.7,-5
22	50313727	rs7410773	A	G	100	PASS	AVGPOST=1;AN=2184;VT=SNP;THETA=0.0006;AA=A;LDAF=0.0996;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=218;AF=0.1;ASN_AF=0.05;AMR_AF=0.04;AFR_AF=0.25;EUR_AF=0.06	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|1:1:-5,0,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50313880	rs114332575	G	A	100	PASS	LDAF=0.0004;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.8999;VT=SNP;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50314068	rs9616389	C	A	100	PASS	RSQ=0.9831;AA=C;AN=2184;AVGPOST=0.9975;LDAF=0.0595;THETA=0.0005;VT=SNP;AC=129;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.06;ASN_AF=0.06;AMR_AF=0.06;AFR_AF=0.0041;EUR_AF=0.09	GT:DS:GL	0|0:0:0,-5,-5	0|0:0.4:-0.01,-1.54,-5	0|0:0:-0.12,-0.62,-3.15	0|0:0:-0,-2.44,-5	0|0:0:-0,-1.97,-5
22	50314705	rs9616392	G	A	100	PASS	ERATE=0.0004;AC=472;AA=G;AN=2184;VT=SNP;RSQ=0.9949;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9978;LDAF=0.2165;AF=0.22;ASN_AF=0.12;AMR_AF=0.15;AFR_AF=0.39;EUR_AF=0.21	GT:DS:GL	0|0:0:-0.01,-1.76,-5	1|0:1.05:-5,-0.91,-0.06	0|1:1:-4.22,-0,-4.7	0|0:0:-0.08,-0.76,-5	0|0:0:-0.06,-0.91,-5
22	50314711	rs75850292	T	TCCACACG	620	PASS	AC=223;AN=2184;RSQ=0.9168;LDAF=0.1013;ERATE=0.0009;VT=INDEL;AVGPOST=0.9783;THETA=0.0011;AF=0.1;ASN_AF=0.05;AMR_AF=0.1;AFR_AF=0.14;EUR_AF=0.12	GT:DS:GL	0|0:0:0,-0.4,-13.7	1|0:0.95:0,0,0	0|0:0:0,0,0	0|0:0:0,-0.3,-7	0|0:0:0,0,0
22	50314970	rs139946841	G	A	100	PASS	AA=G;AN=2184;AC=40;THETA=0.0005;LDAF=0.0186;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9769;AF=0.02;ASN_AF=0.04;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.34,-5	0|0:0:-0,-2.25,-5	0|0:0:-0,-2.15,-5	0|0:0:-0,-2.05,-5	0|0:0:-0.02,-1.36,-5
22	50316007	rs114824010	G	A	100	PASS	AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0046;VT=SNP;AC=10;THETA=0.0055;RSQ=1;ERATE=0.0003;AF=0.0046;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.59,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.58,-5	0|0:0:0,-5,-5
22	50316015	rs111939483	C	T	100	PASS	AA=C;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.037;VT=SNP;AC=81;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0036;AF=0.04;AMR_AF=0.01;AFR_AF=0.15;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.29,-5	0|0:0:-0,-3.28,-5	0|0:0:-0.38,-0.24,-5	0|0:0:-0,-3.17,-5	0|0:0:0,-5,-5
22	50316643	rs148937327	G	A	100	PASS	ERATE=0.0004;AC=18;AVGPOST=0.9983;AA=G;AN=2184;VT=SNP;THETA=0.003;RSQ=0.9119;SNPSOURCE=LOWCOV;LDAF=0.008;AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.9,-5	0|0:0:-0.21,-0.46,-1.35	0|0:0:-0.13,-0.6,-2.19	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.04,-1.01,-5
22	50317825	rs9616396	T	C	100	PASS	AA=C;AN=2184;LDAF=0.2605;RSQ=0.9944;AC=568;AVGPOST=0.9967;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0007;AF=0.26;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.52;EUR_AF=0.21	GT:DS:GL	0|0:0:-0.11,-0.65,-5	1|0:1:-2.16,-0.02,-1.46	0|1:1:-5,-0.03,-1.12	0|0:0:-0.03,-1.25,-5	0|0:0:-0.04,-1.11,-5
22	50318506	rs113800028	C	T	100	PASS	AA=C;AN=2184;AC=513;THETA=0.0031;ERATE=0.0009;LDAF=0.2318;VT=SNP;RSQ=0.9457;AVGPOST=0.9694;SNPSOURCE=LOWCOV;AF=0.23;ASN_AF=0.14;AMR_AF=0.14;AFR_AF=0.49;EUR_AF=0.19	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0.35:-0.12,-0.61,-3.12	0|0:0.05:-0.2,-0.44,-2.06	0|0:0:-0.11,-0.66,-4.22	0|0:0:-0.18,-0.46,-3.03
22	50318665	rs12170023	G	C	100	PASS	ERATE=0.0005;AA=g;AC=542;AN=2184;RSQ=0.9616;VT=SNP;THETA=0.0011;LDAF=0.2437;SNPSOURCE=LOWCOV;AVGPOST=0.9803;AF=0.25;ASN_AF=0.16;AMR_AF=0.15;AFR_AF=0.5;EUR_AF=0.2	GT:DS:GL	0|0:0:-0.02,-1.45,-5	1|0:0.75:-0.48,-0.48,-0.48	0|1:1:-0.19,-0.45,-2.14	0|0:0:-0.18,-0.47,-2.15	0|0:0:-0.14,-0.55,-3.8
22	50318741	rs12170411	C	T	100	PASS	AC=539;AN=2184;VT=SNP;THETA=0.0011;AVGPOST=0.9693;AA=c;RSQ=0.9401;ERATE=0.0038;SNPSOURCE=LOWCOV;LDAF=0.2457;AF=0.25;ASN_AF=0.16;AMR_AF=0.16;AFR_AF=0.48;EUR_AF=0.21	GT:DS:GL	0|0:0:-0.01,-1.5,-5	1|0:1:-0.48,-0.48,-0.48	0|0:0.05:-0.09,-0.73,-4.7	0|0:0.15:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.91,-5
22	50319193	rs191387531	C	T	100	PASS	ERATE=0.0004;RSQ=0.9336;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.001;VT=SNP;THETA=0.0006;AC=2;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50319494	rs113281272	G	A	100	PASS	AVGPOST=0.9985;LDAF=0.0016;AA=G;AN=2184;VT=SNP;RSQ=0.6614;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;ERATE=0.0007;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-3.7,-5	0|0:0:-0,-1.99,-5	0|0:0:-0,-2.2,-5	0|0:0:-0.01,-1.92,-5	0|0:0:-0,-3.17,-5
22	50319864	rs183641968	C	T	100	PASS	ERATE=0.0005;LDAF=0.0009;AA=C;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5929;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.03,-1.23,-5	0|0:0:-0.01,-1.79,-5	0|0:0:-0,-2.5,-5	0|0:0:-0,-2.01,-5	0|0:0:-0.01,-1.59,-5
22	50319968	rs80330007	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9985;LDAF=0.0088;AA=G;AN=2184;VT=SNP;RSQ=0.9403;SNPSOURCE=LOWCOV;AC=19;THETA=0.0036;AF=0.01;AFR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.77,-5	0|0:0:-0,-3.34,-5	0|0:0:-0,-2.03,-5	0|0:0:-0.07,-0.85,-5	0|0:0:-0,-2.11,-5
22	50320655	rs186567444	C	T	100	PASS	ERATE=0.0004;THETA=0.0023;AA=C;RSQ=0.5023;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.11,-0.65,-2.56	0|0:0:-0.19,-0.47,-2.24	0|0:0:-0,-2.64,-5	0|0:0:0,-5,-5
22	50320853	.	C	T	100	PASS	AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;THETA=0.0029;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50320994	.	C	T	100	PASS	AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50321928	rs7410766	T	C	100	PASS	THETA=0.0068;AVGPOST=0.9326;AA=C;AC=387;AN=2184;ERATE=0.015;LDAF=0.1932;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8275;AF=0.18;ASN_AF=0.15;AMR_AF=0.16;AFR_AF=0.18;EUR_AF=0.2	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	1|0:1:-4.22,-0,-2.02	0|0:0.15:-0.11,-0.64,-4.1	0|0:0:-0.19,-0.46,-2.41	0|0:0:-0.06,-0.87,-5
22	50321951	rs56919306	C	CCCCGG	344	PASS	AC=61;AN=2184;VT=INDEL;RSQ=0.6631;THETA=0.0059;LDAF=0.0402;AVGPOST=0.9651;ERATE=0.0038;AF=0.03;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.0026	GT:DS:GL	0|0:0:0,-0.9,-17.7	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0.05:0,0,0
22	50322249	rs9616399	G	C	100	PASS	AA=G;AN=2184;ERATE=0.0009;AVGPOST=0.9895;VT=SNP;RSQ=0.9507;THETA=0.0006;LDAF=0.0969;AC=210;SNPSOURCE=LOWCOV;AF=0.1;ASN_AF=0.07;AMR_AF=0.1;AFR_AF=0.07;EUR_AF=0.13	GT:DS:GL	0|0:0.05:-0.02,-1.38,-5	1|0:1:-1.98,-0.03,-1.3	0|0:0.4:-0.13,-0.6,-3.06	0|0:0:-0.18,-0.47,-2.44	0|0:0:-0.18,-0.46,-2.98
22	50322336	rs114332724	T	G	100	PASS	ERATE=0.0005;AVGPOST=0.9943;AA=T;AN=2184;VT=SNP;AC=54;RSQ=0.9114;SNPSOURCE=LOWCOV;LDAF=0.0253;THETA=0.0042;AF=0.02;AMR_AF=0.01;AFR_AF=0.11	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0.13,-0.61,-2.33	0|0:0:-0.07,-0.81,-4.1	0|0:0:-0.01,-1.66,-5	0|0:0:-0.03,-1.13,-5
22	50322479	rs79192373	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9972;LDAF=0.0106;VT=SNP;THETA=0.0011;RSQ=0.8989;SNPSOURCE=LOWCOV;AC=21;AF=0.01;AMR_AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.12,-0.63,-3.25	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.03,-1.2,-5	0|0:0:-0.11,-0.67,-5
22	50324154	rs28493499	A	G	100	PASS	AC=136;ERATE=0.0004;AN=2184;LDAF=0.063;VT=SNP;AVGPOST=0.9976;THETA=0.0006;AA=A;RSQ=0.9849;SNPSOURCE=LOWCOV;AF=0.06;AMR_AF=0.04;AFR_AF=0.19;EUR_AF=0.04	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0.18,-0.47,-2.33	0|0:0:-0.06,-0.87,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0.11,-0.66,-4.7
22	50325392	.	CTTTAGATG	C	570	PASS	AN=2184;AVGPOST=0.9979;VT=INDEL;LDAF=0.0324;THETA=0.0006;AC=71;ERATE=0.0003;RSQ=0.9756;AF=0.03;ASN_AF=0.04;AMR_AF=0.01;AFR_AF=0.06;EUR_AF=0.02	GT:DS:GL	0|0:0:0,-1.2,-50.6	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,-1.2,-49.4	0|0:0:0,0,0
22	50325770	rs28417096	C	T	100	PASS	ERATE=0.0014;AA=T;AN=2184;LDAF=0.2611;AC=571;RSQ=0.9584;VT=SNP;AVGPOST=0.9778;SNPSOURCE=LOWCOV;THETA=0.0013;AF=0.26;ASN_AF=0.16;AMR_AF=0.18;AFR_AF=0.5;EUR_AF=0.22	GT:DS:GL	0|0:0:-0.19,-0.47,-2.34	1|0:0.95:-2.9,-0.49,-0.17	0|1:1:-2.33,-0.02,-1.37	1|0:1.05:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50325778	rs115368812	G	A	100	PASS	AVGPOST=0.9857;AA=G;AN=2184;VT=SNP;LDAF=0.0223;ERATE=0.0011;SNPSOURCE=LOWCOV;AC=36;THETA=0.0007;RSQ=0.7395;AF=0.02;AMR_AF=0.0028;AFR_AF=0.05;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.23,-0.45,-1.23	0|0:0:-0.48,-0.48,-0.48	0|0:0.45:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50326318	rs183977333	G	A	100	PASS	THETA=0.0009;LDAF=0.0088;AA=G;AN=2184;AVGPOST=0.9914;VT=SNP;ERATE=0.0011;RSQ=0.6649;SNPSOURCE=LOWCOV;AC=11;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.16,-0.51,-2.82	0|0:0:-0.1,-0.7,-3.34	0|0:0:-0.08,-0.77,-5	0|0:0:-0.1,-0.68,-4	0|0:0.05:-0.48,-0.48,-0.48
22	50326844	rs146001173	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;AC=16;AVGPOST=0.9967;VT=SNP;THETA=0.0027;RSQ=0.8444;SNPSOURCE=LOWCOV;LDAF=0.0082;AF=0.01;ASN_AF=0.03	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.01,-1.74,-5	0|0:0:-0.12,-0.62,-3.13	0|0:0:-0.06,-0.89,-5	0|0:0:-0.08,-0.77,-5
22	50326906	rs28734791	A	T	100	PASS	ERATE=0.0004;AVGPOST=0.9945;LDAF=0.253;AA=T;AN=2184;AC=553;RSQ=0.9906;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0042;AF=0.25;ASN_AF=0.11;AMR_AF=0.17;AFR_AF=0.6;EUR_AF=0.17	GT:DS:GL	0|0:0:-0.05,-0.93,-5	1|0:1:-5,-0.01,-1.57	0|1:0.95:-1.27,-0.02,-5	0|0:0:-0,-2.22,-5	0|0:0:-0,-2.13,-5
22	50327416	rs79206784	G	T	100	PASS	THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=161;RSQ=0.9704;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9949;LDAF=0.0746;AF=0.07;ASN_AF=0.06;AMR_AF=0.06;AFR_AF=0.09;EUR_AF=0.08	GT:DS:GL	0|0:0:-0.02,-1.4,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.04,-1.02,-5	1|0:1:-2.62,-0.26,-0.35	0|0:0:-0.11,-0.66,-4.7
22	50328528	rs116643340	G	C	100	PASS	AVGPOST=0.9977;AA=G;AN=2184;AC=16;VT=SNP;LDAF=0.0085;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0006;RSQ=0.8782;AF=0.01;AMR_AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.12,-0.63,-2.36	0|0:0:-0.36,-0.41,-0.77	0|0:0:-0.48,-0.48,-0.48
22	50330138	rs181564292	G	A	100	PASS	AVGPOST=0.9963;LDAF=0.0036;AA=G;AN=2184;VT=SNP;RSQ=0.5812;SNPSOURCE=LOWCOV;AC=4;THETA=0.0007;ERATE=0.0007;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.3,-5	0|0:0:-0.21,-0.46,-1.35	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.18,-0.46,-2.43	0|0:0:-0.19,-0.46,-2.16
22	50331032	rs115322211	G	A	100	PASS	ERATE=0.0004;THETA=0.0014;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;AC=23;SNPSOURCE=LOWCOV;LDAF=0.0108;RSQ=0.9562;AF=0.01;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.19,-0.45,-2.18	0|0:0:-0.04,-1.04,-5	0|0:0.05:-0.18,-0.47,-2.44	0|0:0:-0.06,-0.87,-5
22	50332097	rs77228592	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;LDAF=0.0252;THETA=0.0008;VT=SNP;RSQ=0.9579;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=53;AF=0.02;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.1	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0.07,-0.81,-3.44	0|0:0:-0.12,-0.61,-3.85	0|0:0:-0.06,-0.9,-5	0|0:0.05:-0.19,-0.45,-2.88
22	50333130	rs77002698	G	A	100	PASS	RSQ=0.7981;AA=g;AVGPOST=0.9362;LDAF=0.1576;AN=2184;ERATE=0.0288;AC=302;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AF=0.14;ASN_AF=0.1;AMR_AF=0.15;AFR_AF=0.09;EUR_AF=0.2	GT:DS:GL	0|0:0:-0.02,-1.46,-5	1|0:1:-1.58,-0.01,-3.3	0|1:1:-4.7,-0,-2.16	0|0:0.35:-0.09,-0.71,-4.7	0|0:0:-0.02,-1.27,-5
22	50333748	rs114900897	C	T	100	PASS	RSQ=0.9837;AA=C;AN=2184;VT=SNP;AVGPOST=0.9993;AC=41;LDAF=0.0189;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08	GT:DS:GL	0|0:0:-0.09,-0.72,-5	0|0:0:-0.07,-0.84,-5	0|0:0:-0.04,-1.01,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0.12,-0.63,-4
22	50334443	rs28612446	T	C	100	PASS	AA=C;RSQ=0.9795;AN=2184;VT=SNP;AC=216;LDAF=0.0986;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.996;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.02;EUR_AF=0.16	GT:DS:GL	0|0:0:-0,-2.38,-5	1|0:1:-4.1,-0.57,-0.14	0|1:1:-1.41,-0.02,-2.46	0|0:0:-0.1,-0.7,-4.22	0|0:0:-1.42,-0.02,-3.55
22	50335171	rs143735874	G	A	100	PASS	ERATE=0.0005;LDAF=0.0013;RSQ=0.7578;AA=G;AN=2184;THETA=0.0031;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0,-3.7,-5	0|0:0:-0,-3.17,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.87,-5
22	50335178	rs76125895	A	G	100	PASS	RSQ=0.9837;AN=2184;AC=40;LDAF=0.0186;VT=SNP;AA=A;AVGPOST=0.9991;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08	GT:DS:GL	0|0:0:-0.1,-0.68,-5	0|0:0:-0,-3.8,-5	0|0:0:-0,-3.09,-5	0|0:0:-0.18,-0.47,-2.48	0|0:0:-0.06,-0.87,-5
22	50336118	rs28759049	G	C	100	PASS	RSQ=0.9931;THETA=0.0004;AA=G;AN=2184;AC=220;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;LDAF=0.1007;AF=0.1;ASN_AF=0.07;AMR_AF=0.12;AFR_AF=0.03;EUR_AF=0.16	GT:DS:GL	0|0:0:-0.01,-1.51,-5	1|0:1:-3.01,-0,-5	0|1:1:-5,-0.19,-0.45	0|0:0:-0,-2.38,-5	0|0:0:-0.01,-1.77,-5
22	50336568	.	G	GT	28	PASS	THETA=0.0083;AN=2184;VT=INDEL;RSQ=0.6089;AVGPOST=0.9704;LDAF=0.0294;AC=43;ERATE=0.0018;AF=0.02;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.03	GT:DS:GL	0|0:0:0,-1.2,-16.8	0|0:0.1:0,-0.6,-8.4	0|1:0.55:0,-0.3,-4.2	0|0:0.2:0,-1.2,-15.3	0|0:0:0,-0.9,-12.6
22	50336818	rs145537167	C	T	100	PASS	AA=C;THETA=0.0044;LDAF=0.0092;AN=2184;RSQ=0.7554;AVGPOST=0.9947;VT=SNP;AC=15;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.12,-0.62,-4.22	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0.21,-0.43,-2.43
22	50337840	rs116523211	C	T	100	PASS	ERATE=0.0004;LDAF=0.0123;AA=C;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.8631;SNPSOURCE=LOWCOV;AC=25;AVGPOST=0.9951;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.11,-0.65,-4.22	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.67,-4.4	0|0:0:-0.02,-1.4,-5
22	50337864	rs142241681	G	A	100	PASS	THETA=0.0021;ERATE=0.0005;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5628;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.05,-1,-5	0|0:0:-0.07,-0.83,-4.4	0|0:0:-0.12,-0.62,-3.12	0|0:0:-0.18,-0.47,-2.12	0|0:0:-0.06,-0.89,-5
22	50338589	rs143055323	A	G	100	PASS	AN=2184;AC=107;AVGPOST=0.9967;VT=SNP;LDAF=0.0488;AA=A;SNPSOURCE=LOWCOV;THETA=0.0029;ERATE=0.0003;RSQ=0.9735;AF=0.05;AMR_AF=0.02;AFR_AF=0.15;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.16,-0.52,-2.63	0|0:0:-0.04,-1.08,-5	0|0:0:-0.1,-0.69,-4.1	0|0:0:-0.22,-0.43,-1.78
22	50338589	.	A	AG	122	PASS	ERATE=0.0014;LDAF=0.038;AN=2184;VT=INDEL;AC=70;THETA=0.0066;AVGPOST=0.9697;RSQ=0.6976;AF=0.03;ASN_AF=0.02;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.04	GT:DS:GL	0|0:0:0,0,0	0|0:0.25:0,-0.3,-3.9	0|0:0.1:0,-0.6,-7.8	0|0:0:0,-0.6,-7.8	0|0:0:0,0,0
22	50339247	rs28649563	C	T	100	PASS	AA=C;THETA=0.0022;AN=2184;VT=SNP;RSQ=0.8125;ERATE=0.002;SNPSOURCE=LOWCOV;AC=165;AVGPOST=0.9639;LDAF=0.0854;AF=0.08;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.09;EUR_AF=0.06	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0.2:-0.48,-0.48,-0.48	0|0:0:-0.2,-0.45,-2.08	1|0:1:-0.48,-0.48,-0.48	0|0:0:-0.17,-0.5,-3.49
22	50341363	rs184679688	G	A	100	PASS	AA=G;AN=2184;AC=13;VT=SNP;THETA=0.0006;LDAF=0.0074;SNPSOURCE=LOWCOV;RSQ=0.7931;ERATE=0.0006;AVGPOST=0.9965;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.02,-1.39,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.03,-1.14,-5	0|0:0:-0.48,-0.48,-0.48
22	50342250	rs112785035	C	T	100	PASS	THETA=0.0009;ERATE=0.0005;AA=C;RSQ=0.6141;AN=2184;AVGPOST=0.9972;VT=SNP;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.33,-5	0|0:0:-0,-2.76,-5	0|0:0:-0.01,-1.53,-5	0|0:0:-0,-2.29,-5	0|0:0:-0.02,-1.28,-5
22	50342921	rs138841304	C	T	100	PASS	ERATE=0.0005;AA=C;RSQ=0.5072;LDAF=0.0016;AN=2184;AVGPOST=0.9981;VT=SNP;THETA=0.0033;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.36,-0.44,-0.7	0|0:0:-0.02,-1.42,-5	0|0:0:-0.06,-0.88,-5
22	50343115	rs116714893	C	T	100	PASS	AA=C;THETA=0.0099;AN=2184;VT=SNP;AC=14;AVGPOST=0.9969;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0076;RSQ=0.84;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.02,-1.44,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.22,-0.46,-1.26	0|0:0:-0.14,-0.56,-3.52	0|0:0:-0.17,-0.49,-3.49
22	50343122	rs140615504	G	A	100	PASS	LDAF=0.0041;RSQ=0.3588;AA=G;AN=2184;ERATE=0.0009;THETA=0.0041;VT=SNP;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9937;AF=0.0014;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.41,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.44,-0.46,-0.54	0|0:0:-0.16,-0.52,-3.1	0|0:0:-0.11,-0.66,-5
22	50343467	rs185477551	C	T	100	PASS	ERATE=0.0004;AA=C;THETA=0.0099;AN=2184;RSQ=0.511;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.58,-5	0|0:0:-0.01,-1.53,-5	0|0:0.05:-0.2,-0.45,-2.07	0|0:0:-0.06,-0.88,-5	0|0:0:-0.04,-1.1,-5
22	50343999	rs113491012	A	C	100	PASS	LDAF=0.0446;AN=2184;ERATE=0.0024;VT=SNP;AC=78;AVGPOST=0.9644;AA=A;SNPSOURCE=LOWCOV;RSQ=0.6708;THETA=0.0042;AF=0.04;ASN_AF=0.01;AMR_AF=0.04;AFR_AF=0.02;EUR_AF=0.07	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.21,-0.46,-1.35	0|1:0.85:-0.44,-0.46,-0.54	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50344960	rs28705208	C	T	100	PASS	LDAF=0.1067;AA=T;AN=2184;VT=SNP;AVGPOST=0.9439;AC=201;ERATE=0.0059;SNPSOURCE=LOWCOV;THETA=0.0043;RSQ=0.7646;AF=0.09;ASN_AF=0.01;AMR_AF=0.1;AFR_AF=0.1;EUR_AF=0.14	GT:DS:GL	0|0:0.05:-0.11,-0.65,-4.22	1|0:1:-0.48,-0.48,-0.48	0|1:0.85:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.9,-5	0|0:0.05:-0.48,-0.48,-0.48
22	50345178	rs28433066	G	C	100	PASS	THETA=0.0115;AA=G;AN=2184;AC=104;RSQ=0.7731;VT=SNP;LDAF=0.0608;SNPSOURCE=LOWCOV;ERATE=0.0058;AVGPOST=0.9652;AF=0.05;AMR_AF=0.03;AFR_AF=0.14;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0.15:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.02,-1.37,-5	0|0:0:-0.48,-0.48,-0.48
22	50345729	rs28479081	T	C	100	PASS	RSQ=0.9479;AA=C;AN=2184;AC=1103;ERATE=0.0024;VT=SNP;THETA=0.0017;AVGPOST=0.9602;SNPSOURCE=LOWCOV;LDAF=0.505;AF=0.51;ASN_AF=0.54;AMR_AF=0.41;AFR_AF=0.83;EUR_AF=0.32	GT:DS:GL	0|0:0:-0.02,-1.4,-5	1|0:1:-4.7,-0.03,-1.14	0|1:1.4:-5,-0.99,-0.05	0|1:1:-4.4,-0,-4	1|0:1:-4.7,-0,-3.7
22	50345868	rs77618678	G	C	100	PASS	THETA=0.0014;LDAF=0.1066;AA=G;AN=2184;RSQ=0.8919;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9722;ERATE=0.0006;AC=222;AF=0.1;ASN_AF=0.23;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.09	GT:DS:GL	0|0:0:-0.1,-0.67,-4.4	0|0:0:-0.01,-1.49,-5	0|0:0.05:-0.12,-0.63,-4	0|1:1:-1.56,-0.01,-5	1|0:0.95:-0.48,-0.48,-0.48
22	50346797	rs145721377	C	T	100	PASS	ERATE=0.0005;AA=C;THETA=0.0032;RSQ=0.3732;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0.12,-0.62,-4	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0,-1.97,-5	0|0:0:-0.19,-0.46,-2.95
22	50347549	rs114327817	C	T	100	PASS	THETA=0.0088;AVGPOST=0.9957;AA=C;LDAF=0.0035;RSQ=0.4842;AN=2184;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.12,-0.62,-2.42	0|0:0:-0.1,-0.69,-3.52	0|0:0:-0.03,-1.16,-5	0|0:0:-0.16,-0.5,-3.59
22	50348130	rs28461928	G	A	100	PASS	AC=47;AA=G;AN=2184;THETA=0.0031;AVGPOST=0.9947;VT=SNP;RSQ=0.9175;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0236;AF=0.02;AMR_AF=0.01;AFR_AF=0.09	GT:DS:GL	0|0:0:-0.16,-0.51,-3.03	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.22,-0.46,-1.26	0|0:0:-0.05,-0.93,-5	0|0:0:-0.11,-0.64,-4
22	50348353	rs28672185	G	A	100	PASS	RSQ=0.9628;AA=G;AN=2184;VT=SNP;AVGPOST=0.993;LDAF=0.0801;SNPSOURCE=LOWCOV;THETA=0.0016;ERATE=0.0003;AC=174;AF=0.08;ASN_AF=0.05;AMR_AF=0.12;AFR_AF=0.01;EUR_AF=0.13	GT:DS:GL	0|0:0:-0.05,-1.01,-5	1|0:0.6:-0.05,-1,-4.4	0|1:0.75:-0.22,-0.46,-1.25	0|0:0:-0.03,-1.22,-5	0|0:0:-0.1,-0.67,-5
22	50348747	rs149918205	G	A	100	PASS	AA=G;AN=2184;THETA=0.0038;LDAF=0.0079;VT=SNP;ERATE=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.9931;AC=11;RSQ=0.6575;AF=0.01;ASN_AF=0.02	GT:DS:GL	0|0:0:-0.08,-0.76,-5	0|0:0:-0.12,-0.62,-3.24	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.03,-1.17,-5	0|0:0:-0.48,-0.48,-0.48
22	50350267	rs28629257	A	G	100	PASS	AC=62;THETA=0.0219;AN=2184;AVGPOST=0.9812;LDAF=0.0355;VT=SNP;AA=A;ERATE=0.002;SNPSOURCE=LOWCOV;RSQ=0.7927;AF=0.03;AMR_AF=0.01;AFR_AF=0.11;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.24,-0.45,-1.18	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.04,-1.11,-5
22	50351013	rs150554147	G	A	100	PASS	AA=G;AN=2184;THETA=0.0038;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.62,-5	0|0:0:-0,-3.3,-5	0|0:0:-0,-2.7,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0,-2.15,-5
22	50351137	rs139584334	C	T	100	PASS	ERATE=0.0004;AVGPOST=0.9985;AA=C;AN=2184;RSQ=0.6546;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;THETA=0.0194;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0.07,-0.81,-4.22	0|0:0:-0.07,-0.8,-4.1	0|0:0:-0.03,-1.17,-5	0|0:0:-0.48,-0.48,-0.48
22	50351193	rs28588136	G	A	100	PASS	AC=85;LDAF=0.041;AA=G;AN=2184;THETA=0.0171;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9882;RSQ=0.896;AF=0.04;AMR_AF=0.02;AFR_AF=0.16	GT:DS:GL	0|0:0:-0.04,-1.02,-5	0|0:0:-0.19,-0.45,-2.18	0|0:0.1:-2.04,-0.11,-0.65	0|0:0:-0.19,-0.46,-2.41	0|0:0:-0.02,-1.37,-5
22	50351413	rs28695790	C	T	100	PASS	AC=1641;THETA=0.0106;AA=T;AN=2184;VT=SNP;RSQ=0.8546;SNPSOURCE=LOWCOV;ERATE=0.004;AVGPOST=0.9247;LDAF=0.7403;AF=0.75;ASN_AF=0.72;AMR_AF=0.79;AFR_AF=0.65;EUR_AF=0.83	GT:DS:GL	1|1:2:-5,-1.92,-0.01	0|1:1.15:-0.44,-0.46,-0.54	1|1:1.8:-5,-0.74,-0.09	1|1:2:-5,-1.09,-0.04	1|1:2:-5,-0.95,-0.05
22	50351757	rs144181764	T	C	100	PASS	ERATE=0.0004;AA=T;AN=2184;LDAF=0.0032;AVGPOST=0.9972;VT=SNP;THETA=0.0094;RSQ=0.6259;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.02,-1.31,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.01,-1.59,-5	0|0:0:-0.11,-0.64,-4.1
22	50352220	rs115035933	G	A	100	PASS	ERATE=0.0005;RSQ=0.9308;AA=g;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0101;SNPSOURCE=LOWCOV;AC=21;AVGPOST=0.9982;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04	GT:DS:GL	0|0:0:-0.15,-0.54,-3.28	0|0:0:-0.12,-0.62,-2.42	0|0:0:-0.13,-0.6,-2.18	0|0:0:-0.18,-0.47,-2.44	0|0:0:-0.09,-0.71,-5
22	50352314	rs151297029	C	T	100	PASS	AA=C;AN=2184;AC=13;VT=SNP;RSQ=0.8146;THETA=0.0025;AVGPOST=0.997;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.01;ASN_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.14,-5	0|0:0:-0.07,-0.83,-4.22	0|0:0:-0.13,-0.58,-2.82	0|0:0:-0,-2.02,-5	0|0:0:-0.06,-0.9,-5
22	50352623	rs28496728	A	G	100	PASS	ERATE=0.0005;RSQ=0.9301;AN=2184;AC=661;AVGPOST=0.9616;LDAF=0.3044;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.3;ASN_AF=0.35;AMR_AF=0.3;AFR_AF=0.28;EUR_AF=0.28	GT:DS:GL	1|0:1:-4.7,-0.02,-1.38	0|0:0:-0.12,-0.61,-2.35	0|0:0:-0.19,-0.46,-2.19	0|0:0:-0.05,-0.93,-5	0|1:1:-3.05,-0,-3.92
22	50353082	rs111736848	A	G	100	PASS	AVGPOST=0.9994;AA=G;AN=2184;VT=SNP;AC=5;THETA=0.0012;RSQ=0.9064;LDAF=0.0025;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0.12,-0.62,-3.17	0|0:0:-0.09,-0.71,-5	0|0:0:-0.11,-0.65,-4.7
22	50355828	rs183504919	G	A	100	PASS	THETA=0.0009;AVGPOST=0.9843;AA=g;AN=2184;RSQ=0.3266;LDAF=0.009;VT=SNP;ERATE=0.0017;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;ASN_AF=0.0017;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.43,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-2.42	0|0:0:-0.48,-0.48,-0.48
22	50356386	rs144759588	C	T	100	PASS	AC=18;LDAF=0.0083;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9876;VT=SNP;AA=c;AVGPOST=0.9998;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50357657	rs150927168	A	G	100	PASS	ERATE=0.0005;AN=2184;AC=6;THETA=0.0008;VT=SNP;RSQ=0.8234;LDAF=0.0029;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AA=a;AF=0.0027;ASN_AF=0.01	GT:DS:GL	0|0:0:-0,-2.38,-5	0|0:0:-0,-2.61,-5	0|0:0:-0,-3.8,-5	0|0:0:-0.01,-1.75,-5	0|0:0:-0,-2.2,-5
22	50358059	rs193159516	T	C	100	PASS	THETA=0.0065;ERATE=0.0004;AN=2184;AVGPOST=0.9979;AC=8;LDAF=0.0043;VT=SNP;RSQ=0.7822;SNPSOURCE=LOWCOV;AA=t;AF=0.0037;ASN_AF=0.0035;AMR_AF=0.02	GT:DS:GL	0|0:0:-0.03,-1.15,-5	0|0:0:-0.01,-1.53,-5	0|0:0:-0.07,-0.81,-4.1	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.06,-0.89,-5
22	50358646	rs150113181	G	A	100	PASS	ERATE=0.0013;AA=g;AN=2184;AC=13;LDAF=0.0098;VT=SNP;RSQ=0.5906;SNPSOURCE=LOWCOV;AVGPOST=0.9905;THETA=0.0036;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.28,-5	0|0:0:-0.07,-0.81,-3.47	0|0:0:-0.07,-0.85,-4.4	0|0:0:-0.02,-1.36,-5	0|0:0:-0.04,-1.11,-5
22	50360343	rs73893103	C	G	100	PASS	ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.9895;LDAF=0.0295;VT=SNP;AVGPOST=0.9993;AC=64;SNPSOURCE=LOWCOV;AF=0.03;AMR_AF=0.01;AFR_AF=0.12	GT:DS:GL	0|0:0:-0.08,-0.77,-5	0|0:0:-0.12,-0.63,-3.25	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.03,-1.15,-5	0|0:0:-0.11,-0.65,-4.7
22	50362278	rs190022016	G	A	100	PASS	AVGPOST=0.9985;AA=G;AN=2184;LDAF=0.0015;VT=SNP;RSQ=0.5703;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.11,-0.66,-5	0|0:0:-0.19,-0.49,-1.56	0|0:0:-0.19,-0.45,-2.16	0|0:0:-0.09,-0.71,-4.7	0|0:0:-0.06,-0.88,-5
22	50363151	rs189741587	G	A	100	PASS	AVGPOST=0.9977;LDAF=0.0021;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.5787;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.19,-0.45,-2.17	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.09,-0.74,-5	0|0:0:-0.02,-1.44,-5
22	50363312	rs115111772	G	C	100	PASS	ERATE=0.0004;RSQ=0.9497;AC=18;AA=g;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;LDAF=0.0085;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.79,-5	0|0:0:-0,-2.03,-5	0|0:0:-0,-2.25,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0,-2.03,-5
22	50363621	rs141496303	T	C	100	PASS	RSQ=0.9728;AVGPOST=0.9994;AN=2184;VT=SNP;AC=23;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0108;AA=t;AF=0.01;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.002;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.88,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0,-3.14,-5
22	50415260	rs143114842	G	A	100	PASS	AC=18;AA=G;AN=2184;RSQ=0.9689;LDAF=0.0084;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.34,-5	0|0:0:-0,-3.21,-5	0|0:0:-0,-1.97,-5	0|0:0:-0,-3.17,-5	0|0:0:-0,-2.7,-5
22	50415682	rs190569352	C	T	100	PASS	AA=C;AN=2184;VT=SNP;RSQ=0.6089;THETA=0.0006;ERATE=0.0008;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9982;AF=0.0014;ASN_AF=0.01	GT:DS:GL	0|0:0:-0,-2.29,-5	0|0:0:-0.04,-1.11,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.02,-1.38,-5	0|0:0:-0.12,-0.63,-4
22	50417190	rs145555624	A	T	100	PASS	LDAF=0.0206;AA=T;AN=2184;AC=45;RSQ=0.996;THETA=0.0005;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09	GT:DS:GL	0|0:0:-0,-2.34,-5	0|0:0:-0,-2.1,-5	0|0:0:-0,-3.42,-5	0|0:0:-0.01,-1.71,-5	0|0:0:-0.07,-0.84,-5
22	50418242	rs138998389	T	C	100	PASS	ERATE=0.0005;RSQ=0.9406;LDAF=0.0058;THETA=0.0004;AA=T;AN=2184;AC=13;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.01;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0.04,-1.06,-5	0|0:0:-0.01,-1.56,-5	0|0:0:-0,-1.99,-5	0|0:0:-0.04,-1.09,-5
22	50418977	rs142243532	A	G	100	PASS	AN=2184;VT=SNP;AA=A;LDAF=0.0193;RSQ=0.9797;AC=43;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.08	GT:DS:GL	0|0:0:-0,-2.39,-5	0|0:0:-0,-2.08,-5	0|0:0:-0.01,-1.57,-5	0|0:0:-0,-2.32,-5	0|0:0:-0.02,-1.27,-5
22	50419070	rs182235760	C	T	100	PASS	ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;RSQ=0.6823;VT=SNP;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9984;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.52,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.01,-1.7,-5	0|0:0:-0.48,-0.48,-0.48
22	50420000	rs141287989	G	A	100	PASS	ERATE=0.0004;LDAF=0.0024;AA=G;AN=2184;RSQ=0.7971;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0.13,-0.6,-3.8	0|0:0:-0,-2.25,-5	0|0:0:-0.18,-0.47,-2.16	0|0:0:-0.01,-1.85,-5
22	50420082	rs145071896	C	A	100	PASS	THETA=0.0009;ERATE=0.0004;RSQ=0.9772;AN=2184;AVGPOST=0.999;VT=SNP;AA=A;LDAF=0.0196;SNPSOURCE=LOWCOV;AC=42;AF=0.02;AMR_AF=0.01;AFR_AF=0.08	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0.03,-1.23,-5	0|0:0:-0.01,-1.72,-5	0|0:0:-0.03,-1.18,-5	0|0:0:-0,-2.33,-5
22	50420426	rs137935059	A	G	100	PASS	ERATE=0.0005;LDAF=0.0083;AN=2184;AVGPOST=0.9972;AC=16;THETA=0.0005;VT=SNP;AA=-;RSQ=0.8611;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03	GT:DS:GL	0|0:0:-0,-2.33,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.19,-0.46,-2.21	0|0:0:-0.05,-0.95,-5	0|0:0:-0.07,-0.85,-5
22	50423249	rs146043645	C	T	100	PASS	AA=C;AN=2184;LDAF=0.0037;RSQ=0.6011;VT=SNP;THETA=0.0033;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9965;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.11,-0.67,-4.4	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.05,-0.95,-5	0|0:0:-0.11,-0.64,-3.66	0|0:0:-0.48,-0.48,-0.48
22	50424170	rs184662424	C	A	100	PASS	ERATE=0.0005;LDAF=0.0013;AA=C;AN=2184;VT=SNP;RSQ=0.6802;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0,-4.22,-5	0|0:0:-0,-3.47,-5	0|0:0:-0.03,-1.21,-5	0|0:0:-0.07,-0.83,-5
22	50424590	rs138685054	A	G	100	PASS	ERATE=0.0004;AN=2184;RSQ=0.7371;LDAF=0.0015;VT=SNP;THETA=0.0006;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.18,-0.48,-2.49	0|0:0:-0.07,-0.84,-5	0|0:0:-0,-2.61,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0,-2.09,-5
22	50426314	rs185443365	C	G	100	PASS	RSQ=0.7901;AA=C;AN=2184;LDAF=0.0032;AC=6;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.0027;AFR_AF=0.002;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.68,-5	0|0:0:-0,-2.17,-5	0|0:0:-0.02,-1.43,-5	0|0:0:-0.11,-0.65,-4.1	0|0:0:-0.05,-0.99,-5
22	50426667	rs6010193	C	T	100	PASS	ERATE=0.0005;AN=2184;RSQ=0.9487;AVGPOST=0.9972;LDAF=0.0205;VT=SNP;AA=c;THETA=0.0006;AC=43;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09	GT:DS:GL	0|0:0:-0,-2.03,-5	0|0:0:-0.14,-0.55,-3.3	0|0:0:-0.05,-0.98,-5	0|0:0:-0.19,-0.47,-2.08	0|0:0:-0.22,-0.43,-1.79
22	50427861	rs145661166	C	G	100	PASS	ERATE=0.0005;LDAF=0.0009;AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5929;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.01,-1.55,-5	0|0:0:-0.02,-1.27,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0.01,-1.94,-5
22	50428386	rs150936515	C	T	100	PASS	AA=T;AN=2184;LDAF=0.0032;THETA=0.0005;RSQ=0.4429;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9955;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.18,-0.48,-2.46	0|0:0:-0.07,-0.84,-5	0|0:0:-0.25,-0.45,-1.12	0|0:0:-0.19,-0.46,-2.04	0|0:0:-0.05,-0.96,-5
22	50429332	rs137839	C	A	100	PASS	ERATE=0.0004;AA=C;LDAF=0.2255;AN=2184;RSQ=0.9799;THETA=0.0005;VT=SNP;AVGPOST=0.9915;SNPSOURCE=LOWCOV;AC=493;AF=0.23;ASN_AF=0.16;AMR_AF=0.27;AFR_AF=0.15;EUR_AF=0.3	GT:DS:GL	0|1:1:-5,-0.1,-0.69	0|0:0:-0.01,-1.87,-5	0|0:0:-0.07,-0.81,-4.7	0|0:0:-0.03,-1.18,-5	0|1:1:-1.65,-0.01,-5
22	50429910	rs149858927	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9998;RSQ=0.9135;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-3.08,-5	0|0:0:-0,-2.24,-5	0|0:0:-0.03,-1.22,-5	0|0:0:-0,-2.89,-5
22	50431019	rs188738031	G	A	100	PASS	ERATE=0.0005;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.5574;AC=3;LDAF=0.0031;AVGPOST=0.9965;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.07,-0.82,-4.22	0|0:0:-0.04,-1.01,-5	0|0:0:-0.18,-0.48,-2.17	0|0:0:-0.07,-0.86,-5
22	50431023	rs191656122	C	T	100	PASS	ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.4676;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0.07,-0.82,-4.22	0|0:0:-0.12,-0.63,-4	0|0:0:-0.18,-0.48,-2.19	0|0:0:-0.07,-0.85,-5
22	50431226	rs180867634	T	C	100	PASS	LDAF=0.0013;THETA=0.0004;AA=T;AN=2184;RSQ=0.4559;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9984;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0,-2.08,-5	0|0:0:-0.03,-1.14,-5	0|0:0:-0.04,-1.08,-5	0|0:0:-0.11,-0.64,-3.66	0|0:0:-0.03,-1.25,-5
22	50432776	rs73893109	C	T	100	PASS	AC=62;AA=C;AN=2184;RSQ=0.9944;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;LDAF=0.0283;AF=0.03;AMR_AF=0.01;AFR_AF=0.12	GT:DS:GL	0|0:0:-0.03,-1.12,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.19,-0.46,-2.4	0|0:0:-0.02,-1.37,-5
22	50434707	rs188009980	G	A	100	PASS	AC=7;ERATE=0.0004;LDAF=0.0036;AA=G;AN=2184;VT=SNP;RSQ=0.7982;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9982;AF=0.0032;ASN_AF=0.0017;AFR_AF=0.01;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.44,-0.46,-0.54	0|0:0:-0.05,-1,-5	0|0:0:-0.03,-1.15,-5	0|0:0:-0.18,-0.46,-2.98
22	50435086	rs4838818	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;RSQ=0.9823;VT=SNP;AVGPOST=0.9948;SNPSOURCE=LOWCOV;LDAF=0.1438;AC=312;THETA=0.0043;AF=0.14;ASN_AF=0.14;AMR_AF=0.14;AFR_AF=0.11;EUR_AF=0.17	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0.01,-1.74,-5	0|0:0:-0.04,-1.01,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0.03,-1.13,-5
22	50435599	rs188202550	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.7993;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=4;THETA=0.0003;LDAF=0.0017;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.93,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.54,-5	0|0:0:-0.01,-1.58,-5
22	50436488	rs142430606	G	A	100	PASS	AC=18;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9786;LDAF=0.0085;ERATE=0.0003;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.01,-1.62,-5	0|0:0:-0.03,-1.21,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50439203	rs143091006	G	A	100	PASS	ERATE=0.0005;LDAF=0.0021;AVGPOST=0.9994;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8632;VT=SNP;AC=4;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.18,-5	0|0:0:-0.13,-0.61,-2.34	0|0:0:-0.22,-0.46,-1.26	0|0:0:-0,-4.22,-5	0|0:0:-0,-4.22,-5
22	50439717	rs7291439	G	A	100	PASS	LDAF=0.0027;AA=g;AN=2184;AC=6;VT=SNP;THETA=0.0017;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9841;AVGPOST=0.9999;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.16,-5	0|0:0:-0,-3.52,-5	0|0:0:-0,-4.4,-5	0|0:0:-0.16,-0.5,-2.53	0|0:0:-0.02,-1.36,-5
22	50440104	rs116816299	C	T	100	PASS	RSQ=0.3859;LDAF=0.0021;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9968;ERATE=0.0007;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0.12,-0.62,-4	0|0:0:-0.13,-0.61,-2.21	0|0:0:-0.06,-0.88,-5	0|0:0:-0.18,-0.47,-3.09
22	50441298	rs5771082	G	C	100	PASS	ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;AC=382;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9968;LDAF=0.1753;AF=0.17;ASN_AF=0.17;AMR_AF=0.17;AFR_AF=0.15;EUR_AF=0.19	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0.01,-1.56,-5	1|1:2:-5,-2,-0	0|0:0:-0.03,-1.22,-5	0|0:0:-0.01,-1.6,-5
22	50441985	rs5771192	A	C	100	PASS	AVGPOST=0.9868;AA=C;AN=2184;RSQ=0.9789;LDAF=0.5387;VT=SNP;ERATE=0.0017;THETA=0.0006;AC=1178;SNPSOURCE=LOWCOV;AF=0.54;ASN_AF=0.54;AMR_AF=0.48;AFR_AF=0.61;EUR_AF=0.52	GT:DS:GL	0|1:1:-4.7,-0.01,-1.84	1|0:1:-4.22,-0,-3.8	1|1:2:-1.1,-0.21,-0.51	0|0:0:-0.11,-0.65,-4.4	0|1:1:-0.11,-0.64,-4.1
22	50442628	rs137849	C	T	100	PASS	AC=342;ERATE=0.0004;LDAF=0.1563;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;RSQ=0.9903;AF=0.16;ASN_AF=0.21;AMR_AF=0.13;AFR_AF=0.11;EUR_AF=0.16	GT:DS:GL	0|1:1:-5,-1.16,-0.03	1|0:1:-5,-0,-4.7	0|0:0:-0.08,-0.75,-5	0|0:0:-0.48,-0.48,-0.48	0|1:1:-0.19,-0.45,-2.15
22	50443038	MERGED_DEL_2_107112	CTAGCACTTTGGGAGGCCGAGGAGGGCAGATCACCAGAGGTCAGGGGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTTGCCAGGTGTGGTGGTACACACCTGTAGTCCTAGCTACTCGGGAGGCTGAGGTAGGAGAGGAAGGGAGGCAGAGGTTGCAGTGAGAAGAGATCATGCCACTGCACTCCAGCCTGGATGACAGAGCAAGACTCCATCTCAAAAAAAAAAAGACAACCTCCTTTATGCAAGAAATGAGAAATCTGCATCTTTTGACCCTTTCTAGAAAAAAGACAAAGACTTATTCCAGGCAACCAAGAAAGAATCAAAACCAGAAAGTAAAAAAAAAAAAAAAAAAAAAAGGTGAAGCCACGGAGGAGAAGGACTCACGGTGAGCAAGGAAAATGAGGACATATACAGAGTTAGTGAAACGGGCGCAGGAGGAGAAGCTGCTCATTGTGAAATAAAATGTATAAAAATAAGAACAGGATCTTGTCCCAACTAAGCTGACAAAATGAAGAGGAGGCTGTGTAGAAGGAAGGGTGAGTAAAGCAGAAACACACAAGATTAGTGTGGTACAAAACAGAATTCATTGTTACTGTGTGGAAAAAACTGTGAAACTACAATTCATCATAAACACTTAGCAATAAATATGTTTTGCCTTATTCAAAATAAGGCATAAAAATAATATCCACAGAGTCTTACTGAAAAAACGCCTAACAGATGTGCTTGCTTCAGGAAGGAGAAGGGAGCTCAACAGGAACAAGTGGGTTACAGAAAGGAGCAGCGAGGAGCAGGGAATGGGAAAACACGATGGGGAATTGGGAATTCAAGCTGGTGTTGACAGAGGAGGAGGCTGAGGACAACTCTGTGTGTTTAAAAATACCTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGTCGAGGCGGGCGGATCACTTCGGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTGCTAAAAATACAATGATTAGCTGGGCATGGTGCTGCTGGGCGCCTGTAATTCCAGCTACTTGAGAGGCTAAGGCAGGAGAATCCCTTGAATCCGGGAGGCGGAAGTTGCAGTGAGCCGAGATTGCGCCACTGTACTCCAGCCTGGGCAACAAAGCGAGACCTTGTCCCCCTACCCCCCAGAAAATAAAAAAATAAAATATACCAAAAATAAAAATAAAAACACCCTGGGACTACACTTCCCTCATATGGGAGACCCGGCCATTTGCACCAACTCAACTGCTGAAAAGTACCAATTGGGCTGGAGAAAAAAACATATGTTTTTTTAAAAACCTTCCTAGAAACGTAGGAGAGCTGCGAAAATAATCAGGATGGGGGTGCTGAGGAAAGCAGGGCGTAGGAGGTTGCTTTACAGGGGTGGAGGATGGAGGGAACGTTTCCAACCCAGTGGGAGCTGAGGGCTTTGTGGGGAGGCCCCAGCACATGGTGAGGAAGAACTTCCCCACGTTGAGCTAGGCCTTGACCTGGGTTAGCCAGAGCTGGACCAACCCTCTCCCCAAAGCCCAGGCACTGTTCCAGACTCGCTGAGTGGAGGAGCAGGGAGAGAAAGCTCCCCCAAAGCCCACAACCCAGTACAGATTCACAGCCCAGGTTGGGCCCACCAGGAAGACCCATGAAACCTCAGTCTGTGAATCTGGTTTAAACGGCCCCGACAGTCAGACACTGCTCCTGGCACCACCCAGGAGCAACAGGAATCCAGCCTCCGGGAGGCCCTGAGTCCTGGGACGTTGAGCCGCTGAAGGTAAACAAGCACACCAGGAAGCAGAGAGCCCAGAGTGACGCTGTGGAGAGGGTGGGCCCAGGTGTCCTCCAGTAACAAGCCACAGGCCAAGCAGGCGAAAAAACAGGCTTGAAAATACAGGCAGCAGGAAAGGCTGTGATGAGGGACCAGGCACACTTGAGAGAAATGGAATTCCTAGAAACAAAACCACCACGACAGAATTAAAATACAACGGGTGATTTTTAAGAGCAGATTGGGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACTCTGTCTCTACTAAAAATACACAAAAAATTACCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGTGAATTGCTTGAGCCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACTTCAGCGTGGGCAAAACAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAGGGAGGGGATGTTAAACTAAAAAACCTATATGACAATTTTCATAGATGCAGAAATTTTTCATAAAATTCAATACCTATTCATGATGAAAGAATGTTTAGCAAACTAGGAAAAGAAAGGCACCTCTTTGTCTAGATCAGGGACATCTAGTGCAAACATCCAATAAACTTAATACTGAACAGTAAACCTTTGGAATCATTACTATTAATATCAGGACTCAAACAGGAATTCCCTCATTCACCATTGCCCTGGAGAGCTGAGCCAATTCCACAAGATCCGCCCCCTCCACCCAATGCGTAGGTTTATGAGCTGTCATTAGCTGCAGAATATGTGATCATCATTAAAAAAGGAGACTCCATAGGAAATCTATTAGAAATACTAAAGAGCTTTATCTTTTATTTGTTTATTTATGTTTTTATGAGGCAGAGTCTCACTCCATTGCCCAGGCTGGAGTGCAATGGTGCAATCTTGGCTCACTACAACCTCTGCCTCCTGGGTTCGAGTGATTCTCTTGCCTCAGCCTCCCAGGTAGCTGGGATTACAGGCAAGTGCCACCACACTCAGTTAATTTTTTTGGGGGGGGGATTCTTAGTACAGACAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACGTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCATCAGCCATGCTTTGCATTTGTTGTTTGTTTGTTACTATAGTCCGCTTTGTGAATTTGCATGTCATCCTTGCGCAGGGGCCAAGCTGATCTAATCTCCTCCCTTAAGCTTAGAGGTCCTTGAGGTGAAGAAACATTTAAGTAAAGTTTAGCCATCTATTTTTCTGTTAAATTCAAGTAAAAATAAAATAGTTTAAATGACATAAGGTAATTTCATTTCTATAAAATAATTTTTATCTGTTTATCCTGCAAATATCTGTATATTTGGCTACACAAATGTCTAGAACAGGCCAGGCATGGTGGCTCAAGTTCACAATCCC	CG	.	.	HOMSEQ=TA;HOMLEN=2;AVGPOST=0.9939;END=50446417;THETA=0.0002;RSQ=0.7771;AN=2184;CIEND=-68,85;ERATE=0.0034;AC=20;LDAF=0.0109;CIPOS=-58,99;VT=SV;SVTYPE=DEL;SVLEN=-3378;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-9.08,-125.33	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:-0.02,-1.28,-30.69	0|0:0:0,0,0
22	50445704	rs5771222	T	C	100	PASS	ERATE=0.0004;LDAF=0.5393;AN=2184;VT=SNP;THETA=0.0018;AA=c;AC=1178;SNPSOURCE=LOWCOV;RSQ=0.9975;AVGPOST=0.9987;AF=0.54;ASN_AF=0.53;AMR_AF=0.48;AFR_AF=0.62;EUR_AF=0.53	GT:DS:GL	0|1:1:-5,0,-5	1|0:1:-5,-0,-2.63	1|1:2:-5,-1.66,-0.01	0|0:0:-0.05,-0.96,-5	0|1:1:-5,0,-5
22	50447556	.	T	TG	110	PASS	THETA=0.0009;AN=2184;LDAF=0.0054;AC=8;VT=INDEL;RSQ=0.6866;ERATE=0.0008;AVGPOST=0.9959;AF=0.0037;AFR_AF=0.02	GT:DS:GL	0|0:0:0,-0.6,-6.1	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0
22	50449648	rs74815518	C	T	100	PASS	AA=C;AVGPOST=0.9943;AN=2184;VT=SNP;AC=34;LDAF=0.0177;RSQ=0.8708;SNPSOURCE=LOWCOV;THETA=0.0043;ERATE=0.0003;AF=0.02;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.6,-5	0|0:0.15:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|1:1:-5,-0,-2.59	1|0:1:-5,-0,-3.14
22	50450423	rs145115152	C	G	100	PASS	AN=2184;VT=SNP;RSQ=0.5718;AA=c;AVGPOST=0.9971;LDAF=0.0028;SNPSOURCE=LOWCOV;THETA=0.0042;ERATE=0.0006;AC=3;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.15,-0.54,-3.32	0|0:0:-0.11,-0.66,-4.7
22	50451972	.	C	CCA	235	PASS	AC=72;AN=2184;VT=INDEL;AVGPOST=0.9894;ERATE=0.001;RSQ=0.8926;LDAF=0.0356;THETA=0.0003;AF=0.03;AMR_AF=0.02;AFR_AF=0.13;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-1.2,-16.9	0|0:0:0,-0.3,-4.2	0|0:0.05:0,-0.6,-8.5	0|0:0:0,-0.3,-4.3	0|0:0:0,-0.3,-4.3
22	50456010	rs75725302	C	T	100	PASS	ERATE=0.0004;AA=C;LDAF=0.0227;AC=48;AN=2184;RSQ=0.9713;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;THETA=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.18,-0.47,-2.41	0|0:0:-0,-3.49,-5	0|0:0:-0.01,-1.91,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0.07,-0.85,-5
22	50457262	rs77625006	C	T	100	PASS	AN=2184;AC=46;THETA=0.0005;VT=SNP;RSQ=0.9948;AA=c;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.021;AF=0.02;ASN_AF=0.03;AMR_AF=0.03;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.02,-1.26,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.01,-1.69,-5	0|0:0:-0,-2.4,-5
22	50458262	rs185447149	C	A	100	PASS	AA=C;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.6929;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0.01,-1.81,-5	0|0:0:-0,-3.09,-5	0|0:0:-0,-2.04,-5	0|0:0:-0,-2.35,-5
22	50459574	rs192168738	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9994;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;AA=N;RSQ=0.6313;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.02,-1.27,-5	0|0:0:-0.08,-0.76,-3.74	0|0:0:-0.01,-1.5,-5	0|0:0:-0,-2.34,-5
22	50460568	rs34837272	A	G	100	PASS	LDAF=0.3799;AN=2184;VT=SNP;AVGPOST=0.9836;AC=834;ERATE=0.0035;AA=-;RSQ=0.9734;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.38;ASN_AF=0.29;AMR_AF=0.36;AFR_AF=0.51;EUR_AF=0.38	GT:DS:GL	1|0:1:-5,-0,-3.08	0|0:0:-0.06,-0.88,-5	1|1:1.85:-0.48,-0.48,-0.48	0|0:0:-0,-2.02,-5	0|0:0:-0.04,-1.05,-5
22	50461062	rs181499127	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;LDAF=0.0018;VT=SNP;THETA=0.0006;AVGPOST=0.9991;RSQ=0.7717;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.04,-5	0|0:0:-0.08,-0.8,-5	0|0:0:-0.03,-1.16,-5	0|0:0:-0,-2,-5	0|0:0:-0.01,-1.76,-5
22	50462507	rs191198574	C	A	100	PASS	ERATE=0.0005;AA=C;AN=2184;RSQ=0.5826;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.79,-5	0|0:0:-0,-2.56,-5	0|0:0:-0,-3.74,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0,-2.7,-5
22	50462606	rs8138301	A	C	100	PASS	AA=C;AN=2184;AC=432;AVGPOST=0.9863;VT=SNP;LDAF=0.1978;SNPSOURCE=LOWCOV;ERATE=0.0029;THETA=0.0007;RSQ=0.9654;AF=0.2;ASN_AF=0.18;AMR_AF=0.2;AFR_AF=0.18;EUR_AF=0.22	GT:DS:GL	1|0:1:-4.4,-0,-3.36	0|0:0:-0.01,-1.81,-5	1|1:2:-5,-0.82,-0.07	0|0:0:-0.07,-0.82,-5	0|0:0:-0.04,-1.06,-5
22	50462661	rs137881	A	G	100	PASS	AA=G;AN=2184;AC=2131;LDAF=0.9676;VT=SNP;RSQ=0.7533;ERATE=0.0018;SNPSOURCE=LOWCOV;THETA=0.0016;AVGPOST=0.9803;AF=0.98;ASN_AF=1;AMR_AF=0.96;AFR_AF=0.98;EUR_AF=0.96	GT:DS:GL	1|1:2:-5,-0.9,-0.06	1|1:2:-5,-0.5,-0.16	1|1:2:-2.96,-0.48,-0.18	1|1:2:-5,-0.63,-0.12	1|1:2:-3.13,-0.48,-0.17
22	50462732	rs137882	T	C	100	PASS	LDAF=0.2314;AA=T;AN=2184;AC=502;VT=SNP;THETA=0.0006;ERATE=0.0011;AVGPOST=0.9862;SNPSOURCE=LOWCOV;RSQ=0.9712;AF=0.23;ASN_AF=0.17;AMR_AF=0.28;AFR_AF=0.15;EUR_AF=0.3	GT:DS:GL	0|1:1:-5,-0.89,-0.06	0|0:0:-0.19,-0.45,-2.2	0|0:0:-0.2,-0.44,-1.99	0|0:0:-0.03,-1.17,-5	0|1:1.15:-0.48,-0.48,-0.48
22	50463055	rs76415456	T	C	100	PASS	ERATE=0.0004;AC=219;AVGPOST=0.9912;AA=T;AN=2184;THETA=0.0008;LDAF=0.1014;VT=SNP;RSQ=0.9683;SNPSOURCE=LOWCOV;AF=0.1;ASN_AF=0.26;AMR_AF=0.05;AFR_AF=0.01;EUR_AF=0.07	GT:DS:GL	0|0:0:-0.01,-1.8,-5	0|0:0:-0.02,-1.35,-5	0|0:0:-0.01,-1.54,-5	0|0:0:-0.03,-1.24,-5	0|0:0:-0.06,-0.91,-5
22	50463097	rs192297394	C	T	100	PASS	THETA=0.0009;AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.6701;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-1.98,-5	0|0:0:-0.04,-1.01,-5	0|0:0:-0.08,-0.77,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0,-2.12,-5
22	50463613	rs184633564	C	T	100	PASS	THETA=0.0004;AN=2184;VT=SNP;AA=c;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6745;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.91,-5	0|0:0:-0.03,-1.18,-5	0|0:0:-0,-3.66,-5
22	50463656	rs115305036	A	G	100	PASS	ERATE=0.0004;AVGPOST=0.9983;RSQ=0.8678;AN=2184;VT=SNP;AC=10;AA=A;THETA=0.0017;SNPSOURCE=LOWCOV;LDAF=0.0051;AF=0.0046;AMR_AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0,-2.33,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.05,-0.95,-5	0|0:0:-0.01,-1.83,-5
22	50464489	rs148855464	C	T	100	PASS	ERATE=0.0004;AVGPOST=0.9986;AA=C;LDAF=0.0016;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=4;RSQ=0.6755;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.17,-5	0|0:0:-0,-2.25,-5	0|0:0:-0,-3.52,-5	0|0:0:-0.06,-0.89,-5	0|0:0:-0,-3.11,-5
22	50466325	rs180824745	C	T	100	PASS	AA=C;THETA=0.0014;RSQ=0.4778;AN=2184;LDAF=0.001;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.13,-0.59,-2.91	0|0:0:-0.01,-1.69,-5	0|0:0:-0.2,-0.45,-2.1
22	50466655	rs186224115	C	T	100	PASS	ERATE=0.0004;LDAF=0.0021;AA=C;THETA=0.0124;AN=2184;RSQ=0.8739;VT=SNP;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9995;AF=0.0018;ASN_AF=0.0035;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-2.03,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.1,-5	0|0:0:-0.09,-0.72,-4.7	0|0:0:-0,-3.18,-5
22	50467282	rs13058546	C	A	100	PASS	AA=C;AN=2184;VT=SNP;ERATE=0.0245;AC=113;THETA=0.0056;SNPSOURCE=LOWCOV;AVGPOST=0.8547;LDAF=0.1132;RSQ=0.3926;AF=0.05;ASN_AF=0.05;AMR_AF=0.03;AFR_AF=0.1;EUR_AF=0.04	GT:DS:GL	0|0:0.15:-0.35,-0.41,-0.78	0|0:0:-0.05,-1,-5	0|0:0.3:-0.21,-0.43,-1.84	0|0:0:-0.19,-0.46,-2.06	0|0:0:-0.01,-1.57,-5
22	50467896	rs35180179	C	T	100	PASS	AA=C;THETA=0.0147;AN=2184;ERATE=0.0009;RSQ=0.7978;AVGPOST=0.974;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0515;AC=99;AF=0.05;ASN_AF=0.02;AMR_AF=0.06;AFR_AF=0.01;EUR_AF=0.09	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.89,-5	0|0:0.05:-0.48,-0.48,-0.48
22	50469215	rs116119917	G	T	100	PASS	AC=7;RSQ=0.7602;LDAF=0.0035;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0007;ERATE=0.0006;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-3.85,-5	0|0:0:-0.04,-1.04,-4.7	0|0:0:-0.21,-0.47,-1.33	0|0:0:-0.05,-0.94,-5	0|0:0:-0,-2.4,-5
22	50469853	rs79225508	T	C	100	PASS	ERATE=0.0005;AA=T;AN=2184;VT=SNP;RSQ=0.8649;LDAF=0.02;SNPSOURCE=LOWCOV;THETA=0.0016;AVGPOST=0.9926;AC=39;AF=0.02;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.04	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0,-2.03,-5	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.01,-1.53,-5	0|0:0:-0.04,-1.11,-5
22	50470854	rs151000760	C	G	100	PASS	ERATE=0.0005;AA=C;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.5083;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9974;AF=0.0014;AFR_AF=0.002;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-2.48,-5	0|0:0:-0.19,-0.45,-2.17	0|0:0:-0.05,-0.99,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.11,-0.65,-4.7
22	50471441	rs150442470	G	A	100	PASS	ERATE=0.0004;RSQ=0.7294;LDAF=0.0016;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.56,-5	0|0:0:-0.01,-1.8,-5	0|0:0:-0.05,-0.96,-4.7	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0,-2.46,-5
22	50472186	rs5771310	G	A	100	PASS	AC=270;LDAF=0.1239;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;RSQ=0.9893;ERATE=0.0007;AF=0.12;ASN_AF=0.26;AMR_AF=0.05;AFR_AF=0.1;EUR_AF=0.07	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.13,-0.59,-3.06	0|0:0:-0.04,-1.04,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.01,-1.66,-5
22	50472838	rs76786083	G	A	100	PASS	AVGPOST=0.9986;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.9149;AC=14;LDAF=0.0065;ERATE=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.02	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50474857	rs1079653	A	G	100	PASS	AC=953;AA=G;AN=2184;AVGPOST=0.9947;VT=SNP;THETA=0.0006;LDAF=0.4381;ERATE=0.0008;RSQ=0.9912;SNPSOURCE=LOWCOV;AF=0.44;ASN_AF=0.42;AMR_AF=0.38;AFR_AF=0.34;EUR_AF=0.54	GT:DS:GL	0|1:1:-5,-0.02,-1.27	0|1:0.75:-0,-1.99,-5	1|1:2:-5,-1.73,-0.01	1|0:1:-0.18,-0.47,-2.16	0|0:0:-0.02,-1.39,-5
22	50474927	rs73447938	G	A	100	PASS	ERATE=0.0004;RSQ=0.6404;AA=g;THETA=0.0004;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.01,-1.53,-5	0|0:0:-0.01,-1.48,-5	0|0:0:-0.15,-0.53,-3.15	0|0:0:-0.11,-0.64,-4.7
22	50475477	rs189720726	C	T	100	PASS	AVGPOST=0.9986;RSQ=0.723;AA=C;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;LDAF=0.0017;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0,-2.57,-5	0|0:0:-0,-2.82,-5	0|0:0:-0.11,-0.65,-3.74	0|0:0:-0.01,-1.57,-5
22	50477145	rs149235653	G	A	100	PASS	RSQ=0.8643;AA=G;AN=2184;LDAF=0.0124;THETA=0.0008;VT=SNP;AVGPOST=0.9959;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=25;AF=0.01;AMR_AF=0.05;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0.04,-1.02,-5	0|0:0:-0,-2.68,-5	0|0:0:-0.03,-1.16,-5	0|0:0.05:-0.04,-1.05,-5
22	50477176	rs188756454	G	A	100	PASS	ERATE=0.0005;RSQ=0.5348;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.999;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2.08,-5	0|0:0:-0.04,-1.02,-5	0|0:0:-0.08,-0.77,-5	0|0:0:-0.06,-0.92,-5	0|0:0:-0.02,-1.4,-5
22	50477729	rs57160329	G	A	100	PASS	RSQ=0.9934;LDAF=0.043;AA=g;AC=94;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.04;AMR_AF=0.02;AFR_AF=0.18;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0.01,-1.88,-5	0|0:0:-0,-3.02,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0.02,-1.36,-5
22	50478233	rs180834299	A	C	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;RSQ=0.5156;AA=A;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0.01,-1.68,-5	0|0:0:-0.04,-1.06,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0.06,-0.91,-5
22	50479515	rs73893119	G	A	100	PASS	ERATE=0.0004;THETA=0.0002;AA=G;AN=2184;AC=49;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9865;LDAF=0.0228;AVGPOST=0.9992;AF=0.02;AMR_AF=0.01;AFR_AF=0.09	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.13,-5	0|0:0:-0,-2.11,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50480108	rs9628315	C	T	100	PASS	RSQ=0.9992;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.4176;AC=912;ERATE=0.0003;AF=0.42;ASN_AF=0.38;AMR_AF=0.33;AFR_AF=0.46;EUR_AF=0.46	GT:DS:GL	0|1:1:-5,0,-5	0|1:1:-5,0,-5	1|1:2:-5,-5,0	1|0:1:-5,0,-5	0|0:0:0,-5,-5
22	50483123	rs144377319	C	T	100	PASS	ERATE=0.0005;AVGPOST=0.9977;THETA=0.0004;AN=2184;AC=8;VT=SNP;AA=c;RSQ=0.8073;SNPSOURCE=LOWCOV;LDAF=0.0048;AF=0.0037;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.82,-5	0|0:0:-0,-2.49,-5	0|0:0:-0,-2.32,-5	0|0:0:-0.17,-0.5,-2.5	0|0:0:-0,-3.66,-5
22	50484041	rs138708333	G	A	100	PASS	AA=g;THETA=0.0004;AN=2184;LDAF=0.0037;VT=SNP;ERATE=0.0008;AVGPOST=0.9948;SNPSOURCE=LOWCOV;AC=4;RSQ=0.4131;AF=0.0018;AMR_AF=0.01;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-4.4,-5	0|0:0:-0.07,-0.82,-3.52	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.17,-0.5,-2.5	0|0:0:-0.05,-0.93,-5
22	50484089	rs142768749	C	T	100	PASS	RSQ=0.6829;THETA=0.0004;AN=2184;AVGPOST=0.9996;VT=SNP;AA=c;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.8,-5	0|0:0:-0.02,-1.28,-5	0|0:0:-0.05,-1,-4.22	0|0:0:-0.03,-1.21,-5	0|0:0:-0.01,-1.62,-5
22	50484271	rs147401016	G	A	100	PASS	AC=17;ERATE=0.0005;RSQ=0.8886;LDAF=0.0086;THETA=0.0014;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;AF=0.01;ASN_AF=0.03	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-3.11,-5	0|0:0:-0,-3.85,-5
22	50484343	.	G	T	100	PASS	THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.7571;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-3.42,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.7,-5
22	50484836	rs186002530	C	T	100	PASS	ERATE=0.0004;AA=C;RSQ=0.8519;AN=2184;AVGPOST=0.9997;THETA=0.0008;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.01,-1.66,-5	0|0:0:-0.16,-0.52,-3.06	0|0:0:-0,-2.13,-5
22	50485982	rs56043892	G	C	100	PASS	AVGPOST=0.9986;AA=G;AN=2184;VT=SNP;LDAF=0.0537;AC=116;SNPSOURCE=LOWCOV;RSQ=0.9888;ERATE=0.0003;THETA=0.0036;AF=0.05;ASN_AF=0.03;AMR_AF=0.07;AFR_AF=0.02;EUR_AF=0.09	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0.05:-0.12,-0.63,-3.27	0|0:0:-0.21,-0.47,-1.33	0|0:0:-0.01,-1.7,-5	0|0:0:-0.01,-1.69,-5
22	50487453	rs138687986	G	A	100	PASS	THETA=0.0026;AA=G;AN=2184;VT=SNP;RSQ=0.4749;LDAF=0.0023;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.19,-0.45,-2.17	0|0:0:-0,-2.19,-5	0|0:0:-0,-4.22,-5
22	50487828	rs191656346	G	A	100	PASS	AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7073;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;THETA=0.0013;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50489790	rs141076077	T	G	100	PASS	ERATE=0.0004;THETA=0.0047;AA=T;AN=2184;RSQ=0.9472;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=11;LDAF=0.005;AF=0.01;AMR_AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0,-2.08,-5	0|0:0:-0,-3.15,-5	0|0:0:-0.06,-0.89,-5	0|0:0:-0,-2.1,-5
22	50490404	rs145507079	C	T	100	PASS	ERATE=0.0004;AA=C;LDAF=0.0016;AN=2184;VT=SNP;THETA=0.0142;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=3;RSQ=0.8453;AF=0.0014;ASN_AF=0.0035;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0,-1.96,-5	0|0:0:-0,-2.34,-5	0|0:0:-0,-3.15,-5	0|0:0:-0.19,-0.45,-2.3	0|0:0:-0.04,-1.08,-5
22	50490672	rs137915	A	G	100	PASS	RSQ=0.7008;AVGPOST=0.9921;LDAF=0.9894;AA=G;AN=2184;VT=SNP;THETA=0.0153;AC=2164;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.99;ASN_AF=1;AMR_AF=0.99;AFR_AF=1;EUR_AF=0.98	GT:DS:GL	1|1:2:-5,-1.85,-0.01	1|1:2:-5,-1.72,-0.01	1|1:2:-4.7,-0.24,-0.37	1|1:2:-5,-1.16,-0.03	1|1:2:-3.17,-0.49,-0.17
22	50490942	rs73429531	C	T	100	PASS	RSQ=0.9473;AA=T;AN=2184;AC=104;VT=SNP;THETA=0.0161;SNPSOURCE=LOWCOV;AVGPOST=0.9931;ERATE=0.0006;LDAF=0.0497;AF=0.05;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.14;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-3.36,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.02,-5	0|1:1:-5,0,-5
22	50490960	rs139757047	C	T	100	PASS	AA=C;LDAF=0.0035;AN=2184;THETA=0.0189;AVGPOST=0.9979;ERATE=0.0009;AC=6;VT=SNP;RSQ=0.7443;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.01;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0,-2.74,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.81,-5	0|0:0:-0,-2.45,-5
22	50491372	rs140134549	G	A	100	PASS	ERATE=0.0021;AA=g;AN=2184;LDAF=0.0057;VT=SNP;RSQ=0.7136;AC=9;THETA=0.024;SNPSOURCE=LOWCOV;AVGPOST=0.9961;AF=0.0041;ASN_AF=0.01;AMR_AF=0.01;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.02,-1.44,-5	0|0:0:-0,-2.23,-5	0|0:0:-0.01,-1.5,-5	0|0:0:-0.19,-0.46,-2.04	0|0:0:-0.01,-1.87,-5
22	50491728	rs141042940	A	G	100	PASS	AN=2184;LDAF=0.001;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.02,-1.43,-5	0|0:0:-0,-2.05,-5	0|0:0:-0,-2.6,-5	0|0:0:-0,-2.61,-5	0|0:0:-0,-3.1,-5
22	50492836	.	CCTCCCTCTCCTGGG	C	312	PASS	ERATE=0.0004;AN=2184;LDAF=0.0102;VT=INDEL;AC=22;RSQ=0.9532;AVGPOST=0.9988;THETA=0.0007;AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:0,-1.8,-101.4	0|0:0:0,0,0	0|0:0:0,-0.3,-20.3	0|0:0:0,-0.3,-20.5	0|0:0:0,0,0
22	50492922	rs114821688	C	T	100	PASS	AA=C;AN=2184;RSQ=0.9905;LDAF=0.0046;VT=SNP;AC=10;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0046;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.53,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-1.99,-5	0|0:0:-0,-3.04,-5
22	50493008	rs150838871	G	A	100	PASS	SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.9873;AC=15;THETA=0.0007;ERATE=0.0003;LDAF=0.0069;AF=0.01;AMR_AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0,-2.32,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.4,-5	0|0:0:-0,-3.62,-5
22	50493181	rs139989776	C	T	100	PASS	AVGPOST=1;THETA=0.0004;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.69,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-3.44,-5	0|0:0:-0,-2.44,-5	0|0:0:-0,-2.12,-5
22	50494631	rs144086694	A	G	100	PASS	AVGPOST=0.9983;AN=2184;AC=13;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;LDAF=0.0065;AA=a;ERATE=0.0006;RSQ=0.8978;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.03,-1.23,-5	0|0:0:-0.01,-1.82,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0.01,-1.73,-5	0|0:0:-0.01,-1.61,-5
22	50495779	rs182360266	G	A	100	PASS	THETA=0.0015;AA=G;AN=2184;VT=SNP;AC=22;AVGPOST=0.975;RSQ=0.5058;SNPSOURCE=LOWCOV;ERATE=0.004;LDAF=0.0195;AF=0.01;ASN_AF=0.0035;AFR_AF=0.03;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.04,-1.02,-5	0|0:0:-0.09,-0.73,-3	0|0:0.05:-0.08,-0.77,-3.74	0|0:0:-0.18,-0.47,-2.13	0|0:0.05:-0.11,-0.64,-4
22	50495969	rs111859624	G	A	100	PASS	THETA=0.0015;ERATE=0.0572;AA=G;AN=2184;AVGPOST=0.8196;VT=SNP;LDAF=0.2888;AC=514;SNPSOURCE=LOWCOV;RSQ=0.576;AF=0.24;ASN_AF=0.35;AMR_AF=0.22;AFR_AF=0.17;EUR_AF=0.2	GT:DS:GL	0|0:0.4:-0.19,-0.46,-2.32	0|0:0.35:-0.21,-0.46,-1.35	1|0:1.1:-1.86,-0.42,-0.22	0|0:0.05:-0.18,-0.48,-2.2	0|1:1:-3.74,-0,-5
22	50497694	rs2294381	A	G	100	PASS	LDAF=0.143;AN=2184;THETA=0.006;VT=SNP;AA=A;AVGPOST=0.9811;AC=314;RSQ=0.9383;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.14;ASN_AF=0.24;AMR_AF=0.14;AFR_AF=0.12;EUR_AF=0.09	GT:DS:GL	0|0:0:-0.02,-1.37,-5	0|1:0.75:-0.19,-0.45,-2.2	0|0:0:-0.02,-1.35,-5	0|0:0:-0.17,-0.5,-2.8	0|0:0:-0.03,-1.25,-5
22	50498239	rs80312581	C	G	100	PASS	ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;RSQ=0.845;VT=SNP;AC=15;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.0077;AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.02,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.07,-0.83,-5	0|0:0:-0.02,-1.35,-5	0|0:0:-0.19,-0.46,-2.16
22	50498323	rs188855026	A	C	100	PASS	ERATE=0.0014;AN=2184;VT=SNP;THETA=0.0011;RSQ=0.6412;AA=A;LDAF=0.0022;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9982;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-2.91,-5	0|0:0:-0.12,-0.62,-2.42	0|0:0:-0,-2.02,-5	0|0:0:-0,-1.99,-5	0|0:0:-0.02,-1.33,-5
22	50498869	rs2294384	G	A	100	PASS	LDAF=0.0298;RSQ=0.9707;AN=2184;VT=SNP;AA=A;AC=64;SNPSOURCE=LOWCOV;AVGPOST=0.9978;THETA=0.0007;ERATE=0.0003;AF=0.03;ASN_AF=0.04;AMR_AF=0.04;AFR_AF=0.03;EUR_AF=0.01	GT:DS:GL	0|1:1:-5,0,-5	0|0:0:-0.02,-1.27,-5	0|0:0:-0.04,-1.01,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0.06,-0.91,-5
22	50498870	rs180844259	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.6083;AVGPOST=0.9989;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.97,-5	0|0:0:-0.04,-1.06,-5	0|0:0:-0.04,-1.03,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0.06,-0.91,-5
22	50499059	rs189382860	G	A	100	PASS	ERATE=0.0004;LDAF=0.0009;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.5542;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0,-1.99,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.67,-5
22	50499598	rs12484303	G	A	100	PASS	AA=G;AN=2184;AC=37;AVGPOST=0.9944;ERATE=0.0009;VT=SNP;LDAF=0.018;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.8837;AF=0.02;ASN_AF=0.01;AMR_AF=0.08;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0.04,-1.02,-5	0|0:0:-0.06,-0.87,-3.59	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0.07,-0.84,-5
22	50499957	rs41283496	G	A	100	PASS	AA=G;AN=2184;LDAF=0.0197;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.9967;ERATE=0.0003;AVGPOST=0.9999;AC=42;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.1,-5	0|1:1:-5,0,-5	1|0:1:-5,0,-5
22	50500475	rs116623636	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9957;AA=g;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=21;RSQ=0.8782;LDAF=0.0104;AF=0.01;ASN_AF=0.0017;AFR_AF=0.04;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-1.97,-5	1|0:0.6:-1.82,-0.01,-3.15	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.03,-1.17,-5
22	50500736	rs192893596	G	A	100	PASS	RSQ=0.323;LDAF=0.0328;THETA=0.0004;AA=G;AN=2184;AC=26;VT=SNP;AVGPOST=0.9457;ERATE=0.006;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.32,-5	0|0:0.1:-0.13,-0.6,-2.29	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50501073	rs183818287	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9986;RSQ=0.3024;AA=G;AN=2184;VT=SNP;LDAF=0.0007;AC=0;SNPSOURCE=LOWCOV;THETA=0.001;AF=0	GT:DS:GL	0|0:0:-0,-2.29,-5	0|0:0:-0,-2.26,-5	0|0:0:-0.11,-0.65,-3.28	0|0:0:-0.18,-0.47,-2.43	0|0:0:-0.11,-0.64,-4
22	50501832	rs113305264	G	A	100	PASS	RSQ=0.5037;AA=G;AN=2184;LDAF=0.0032;VT=SNP;THETA=0.0006;AVGPOST=0.9964;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.77,-5	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.02,-1.3,-5	0|0:0:-0.2,-0.45,-1.92	0|0:0:-0.03,-1.21,-5
22	50502245	rs115774984	C	T	100	PASS	AA=C;AN=2184;AC=144;VT=SNP;ERATE=0.0019;AVGPOST=0.9608;LDAF=0.0713;SNPSOURCE=LOWCOV;THETA=0.0016;RSQ=0.7975;AF=0.07;ASN_AF=0.05;AMR_AF=0.09;AFR_AF=0.06;EUR_AF=0.07	GT:DS:GL	0|0:0:-0.01,-1.93,-5	1|0:1:-2.49,-0.23,-0.4	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.07,-0.85,-5	0|0:0:-0.11,-0.65,-4.7
22	50502808	rs150770587	G	A	100	PASS	ERATE=0.0004;AA=g;RSQ=0.9095;AN=2184;VT=SNP;AC=10;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.005;THETA=0.0003;AF=0.0046;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.87,-5	0|0:0:-0,-3.27,-5	0|0:0:-0,-3.85,-5	0|0:0.35:-0.03,-1.15,-5	0|0:0:-0,-3.92,-5
22	50503457	rs188426056	G	A	100	PASS	AC=7;LDAF=0.0083;AA=G;AN=2184;RSQ=0.3852;AVGPOST=0.9869;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0029;AF=0.0032;ASN_AF=0.0017;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0.5:-2.09,-0.01,-2.11	0|0:0.05:-0.1,-0.67,-4.1	0|0:0:-0.2,-0.45,-1.92	0|0:0.05:-0.04,-1.09,-5
22	50503985	rs183029035	C	G	100	PASS	ERATE=0.0004;AA=C;THETA=0.0002;AVGPOST=0.9994;AN=2184;VT=SNP;LDAF=0.0007;RSQ=0.5838;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0,-2.04,-5	0|0:0:-0,-3.04,-5	0|0:0:-0.03,-1.14,-5	0|0:0:-0.11,-0.64,-4.1
22	50505230	rs192314819	C	A	100	PASS	LDAF=0.0013;AA=C;AN=2184;RSQ=0.5142;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9984;THETA=0.0003;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0,-2.07,-5	0|0:0:-0,-3.34,-5	0|0:0:-0,-3.04,-5	0|0:0:-0.01,-1.61,-5	0|0:0:-0,-2.32,-5
22	50506810	rs5771349	A	G	100	PASS	AVGPOST=1;AA=G;AN=2184;AC=249;VT=SNP;THETA=0.0006;LDAF=0.1147;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13	GT:DS:GL	0|0:0:0,-5,-5	1|0:1:-5,-0,-4.1	0|0:0:-0,-2.4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50506936	.	T	C	100	PASS	AVGPOST=1;LDAF=0.0009;RSQ=0.9768;THETA=0.0004;AA=T;AN=2184;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50507094	rs111258391	T	C	100	PASS	LDAF=0.1148;AA=T;AN=2184;AC=249;THETA=0.0031;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.999;AF=0.11;ASN_AF=0.1;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13	GT:DS:GL	0|0:0:0,-5,-5	1|0:1:-4.22,-0,-2.91	0|0:0:-0.13,-0.6,-3.07	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50507640	rs149986667	T	C	100	PASS	ERATE=0.0004;AN=2184;LDAF=0.086;VT=SNP;AC=186;AVGPOST=0.9959;SNPSOURCE=LOWCOV;RSQ=0.9792;THETA=0.0042;AA=t;AF=0.09;ASN_AF=0.08;AMR_AF=0.11;AFR_AF=0.03;EUR_AF=0.12	GT:DS:GL	0|0:0:-0.05,-0.95,-5	1|0:1:-0.08,-0.76,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.05,-0.95,-5
22	50507849	rs141310305	G	A	100	PASS	THETA=0.0009;AVGPOST=0.9985;LDAF=0.0021;AA=G;AN=2184;VT=SNP;RSQ=0.6898;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0.07,-0.85,-5	0|0:0:-0.2,-0.44,-2.15	0|0:0:-0.08,-0.78,-5
22	50508205	rs146858469	G	A	100	PASS	AC=12;ERATE=0.0005;RSQ=0.9063;THETA=0.0004;AA=G;AN=2184;LDAF=0.0057;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AF=0.01;AMR_AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.07,-5	0|0:0:-0,-2.04,-5	0|0:0:-0.01,-1.79,-5	0|0:0:-0.02,-1.45,-5	0|0:0:-0,-3.38,-5
22	50508331	rs5771145	T	C	100	PASS	ERATE=0.0004;AA=C;AC=248;LDAF=0.1145;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.001;RSQ=0.9962;AF=0.11;ASN_AF=0.09;AMR_AF=0.16;AFR_AF=0.08;EUR_AF=0.13	GT:DS:GL	0|0:0:-0.01,-1.48,-5	1|0:1:-2.28,-0.02,-1.47	0|0:0:-0.07,-0.83,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.04,-1.01,-5
22	50508495	rs143792577	G	C	100	PASS	THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9914;AC=8;ERATE=0.0009;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.5459;LDAF=0.0073;AF=0.0037;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.76,-5	0|0:0.1:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.47,-2.08	0|0:0:-0.48,-0.48,-0.48
22	50509196	rs2076136	G	A	100	PASS	THETA=0.0096;AA=G;AN=2184;LDAF=0.1755;RSQ=0.9689;AVGPOST=0.9871;VT=SNP;AC=383;SNPSOURCE=LOWCOV;ERATE=0.0037;AF=0.18;ASN_AF=0.33;AMR_AF=0.14;AFR_AF=0.05;EUR_AF=0.16	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.01,-1.71,-5	0|1:1:-4.7,-0,-2.74	0|0:0:-0.01,-1.6,-5	0|0:0:-0.06,-0.89,-5
22	50509438	rs138875792	C	T	100	PASS	AA=C;AN=2184;RSQ=0.5736;ERATE=0.0009;VT=SNP;AVGPOST=0.9973;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=4;THETA=0.001;AF=0.0018;AFR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0.03,-1.25,-5	0|0:0:-0.03,-1.15,-5	0|0:0:-0.06,-0.9,-5	0|0:0:-0.12,-0.63,-4.7
22	50509450	rs149299088	C	T	100	PASS	AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9997;RSQ=0.7805;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0.01,-1.58,-5	0|0:0:-0.13,-0.6,-2.98	0|0:0:-0.11,-0.66,-4.22	0|0:0:-0.1,-0.7,-5
22	50510162	rs187933409	C	T	100	PASS	AA=C;RSQ=0.876;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2.06,-5	0|0:0:-0,-3.49,-5	0|0:0:-0.01,-1.71,-5	0|0:0:-0.02,-1.42,-5	0|0:0:-0,-4.1,-5
22	50511514	rs150039865	C	G	100	PASS	AC=47;ERATE=0.0004;AN=2184;LDAF=0.0219;THETA=0.0008;VT=SNP;AA=c;RSQ=0.9816;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0.19,-0.45,-2.17	0|0:0:-0.12,-0.63,-4	0|0:0:-0.11,-0.66,-4.7	0|0:0:-0.11,-0.65,-4.7
22	50511988	rs6010257	G	C	100	PASS	THETA=0.005;AA=C;AN=2184;VT=SNP;LDAF=0.5415;ERATE=0.0079;RSQ=0.9261;AVGPOST=0.9491;SNPSOURCE=LOWCOV;AC=1208;AF=0.55;ASN_AF=0.36;AMR_AF=0.6;AFR_AF=0.78;EUR_AF=0.53	GT:DS:GL	1|1:2:-2.98,-0.46,-0.19	0|0:0.7:-0.42,-0.44,-0.58	0|0:0:-0.06,-0.88,-5	1|0:1:-4,-0,-4.22	0|0:0:-0.48,-0.48,-0.48
22	50513075	rs142062713	T	C	100	PASS	AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;RSQ=0.62;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.77,-5	0|0:0:-0,-2.32,-5	0|0:0:-0,-1.96,-5	0|0:0:-0.03,-1.12,-5	0|0:0:-0.07,-0.85,-5
22	50513405	rs5771362	A	C	100	PASS	LDAF=0.3257;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9953;AC=711;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9919;AF=0.33;ASN_AF=0.33;AMR_AF=0.36;AFR_AF=0.43;EUR_AF=0.24	GT:DS:GL	0|0:0:-0.01,-1.76,-5	1|1:2:-5,-1.87,-0.01	0|0:0:-0,-2.11,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0.01,-1.63,-5
22	50513871	rs6010259	C	T	100	PASS	ERATE=0.0004;RSQ=0.9902;AA=C;THETA=0.0002;AN=2184;VT=SNP;LDAF=0.1965;SNPSOURCE=LOWCOV;AC=428;AVGPOST=0.996;AF=0.2;ASN_AF=0.12;AMR_AF=0.23;AFR_AF=0.1;EUR_AF=0.3	GT:DS:GL	1|1:2:-5,-0.86,-0.06	0|0:0:-0.04,-1.06,-5	0|0:0:-0.12,-0.6,-3.8	1|0:1:-1.88,-0.01,-3.62	0|0:0:-0.06,-0.87,-5
22	50514505	rs185057413	C	T	100	PASS	ERATE=0.0004;AA=C;AVGPOST=0.9994;AN=2184;RSQ=0.7683;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.75,-5	0|0:0:-0,-2.29,-5	0|0:0:-0,-2.04,-5	0|0:0:-0,-2.7,-5	0|0:0:-0,-4.4,-5
22	50514655	rs75982207	A	G	100	PASS	AC=7;ERATE=0.0004;RSQ=0.8767;AN=2184;LDAF=0.0032;VT=SNP;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0,-2.32,-5	0|0:0:-0,-3.38,-5	0|0:0:-0.01,-1.78,-5	0|0:0:-0.01,-1.86,-5
22	50515185	rs184899868	C	T	100	PASS	LDAF=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.8999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50515213	rs191396436	C	T	100	PASS	AVGPOST=1;AA=C;AN=2184;THETA=0.0001;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50516195	rs137926	T	C	100	PASS	THETA=0.0023;LDAF=0.1537;AA=T;AN=2184;VT=SNP;RSQ=0.9938;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=335;AVGPOST=0.9982;AF=0.15;ASN_AF=0.21;AMR_AF=0.17;AFR_AF=0.02;EUR_AF=0.19	GT:DS:GL	0|0:0:-0,-2.61,-5	0|0:0:-0,-2.3,-5	1|0:1:-5,-0,-4.22	0|0:0:-0.03,-1.14,-5	0|0:0:-0,-2.39,-5
22	50516655	rs111346078	G	A	100	PASS	RSQ=0.9329;AA=G;AN=2184;AVGPOST=0.9952;VT=SNP;ERATE=0.001;LDAF=0.0303;SNPSOURCE=LOWCOV;AC=63;THETA=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.12	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.24,-0.4,-1.5	0|0:0:-0.14,-0.56,-3.14	0|0:0:-0.18,-0.48,-2.17	0|0:0:-0.14,-0.56,-4
22	50517300	rs188189602	T	G	100	PASS	ERATE=0.0004;RSQ=0.4836;AA=T;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;THETA=0.0003;AVGPOST=0.9992;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.04,-1.08,-5	0|0:0:-0,-2.8,-5	0|0:0:-0,-3.42,-5	0|0:0:-0.07,-0.85,-5	0|0:0:-0.01,-1.58,-5
22	50518196	rs75473585	T	C	100	PASS	THETA=0.0002;AA=T;AN=2184;AC=26;VT=SNP;RSQ=0.9965;LDAF=0.0119;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;AFR_AF=0.05	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-3.49,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50518300	rs192394296	T	C	100	PASS	AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50519565	rs185659429	T	C	100	PASS	ERATE=0.0005;THETA=0.0044;AA=T;AN=2184;AVGPOST=0.9981;VT=SNP;RSQ=0.4145;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.01,-1.7,-5	0|0:0:-0,-2.53,-5	0|0:0.3:-0.1,-0.69,-4.1	0|0:0:-0.12,-0.6,-3.7
22	50519873	rs181269632	C	T	100	PASS	AVGPOST=0.9986;AA=C;RSQ=0.8081;AN=2184;AC=6;VT=SNP;LDAF=0.003;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.0027;ASN_AF=0.01	GT:DS:GL	0|0:0:-0,-2.36,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0.02,-1.28,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0,-3.17,-5
22	50520473	rs12484523	C	T	100	PASS	ERATE=0.0014;AA=C;LDAF=0.2321;AN=2184;AVGPOST=0.9947;VT=SNP;AC=505;SNPSOURCE=LOWCOV;RSQ=0.9872;THETA=0.0003;AF=0.23;ASN_AF=0.3;AMR_AF=0.3;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:-0.11,-0.65,-4.4	1|1:2:-5,-0.97,-0.05	0|0:0:-0.04,-1.03,-5	0|0:0:-0.02,-1.41,-5	0|0:0:-0.12,-0.63,-3.92
22	50520696	rs183592775	C	G	100	PASS	AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9979;LDAF=0.0015;VT=SNP;RSQ=0.3387;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.12,-0.61,-2.37	0|0:0:-0.19,-0.45,-2.15	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.64,-4
22	50525472	rs186083948	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6583;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0,-2.59,-5	0|0:0:-0,-2.59,-5	0|0:0.45:-0.11,-0.65,-4.1	0|0:0:-0.01,-1.56,-5
22	50525486	rs145708025	G	C	100	PASS	AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0059;RSQ=0.8509;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;THETA=0.0003;AF=0.01;ASN_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0.01,-1.91,-5	0|0:0:-0,-2.1,-5	0|0:0:-0.1,-0.67,-4.22	0|0:0:-0.07,-0.85,-5
22	50525491	rs192139914	A	G	100	PASS	AVGPOST=0.9912;AN=2184;RSQ=0.3188;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0012;THETA=0.0062;LDAF=0.005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.07,-0.83,-5	0|0:0:-0.01,-1.67,-5	0|0:0:-0,-2.09,-5	0|0:0:-0.26,-0.35,-3.8	0|0:0.05:-0.07,-0.84,-5
22	50525523	rs137934	T	C	100	PASS	AA=C;AN=2184;THETA=0.0008;RSQ=0.993;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AVGPOST=0.9958;LDAF=0.642;AC=1404;AF=0.64;ASN_AF=0.58;AMR_AF=0.76;AFR_AF=0.47;EUR_AF=0.75	GT:DS:GL	1|1:2:-5,-1.63,-0.01	1|1:2:-5,-0.78,-0.08	1|0:1:-0.18,-0.48,-2.33	1|0:1:-4.4,-0.01,-1.53	0|0:0:-0.19,-0.46,-2.16
22	50526112	rs187091047	G	A	100	PASS	AVGPOST=0.9994;AA=g;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.6553;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.01,-1.56,-5	0|0:0:-0,-2.03,-5	0|0:0:-0,-1.98,-5
22	50526793	rs187671614	C	A	100	PASS	ERATE=0.0005;LDAF=0.0024;RSQ=0.5469;AN=2184;VT=SNP;THETA=0.0011;AA=c;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.44,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0.19,-0.45,-2.14	0|0:0:-0.2,-0.44,-1.84	0|0:0:-0.12,-0.63,-3.92
22	50527740	rs41283475	A	G	100	PASS	ERATE=0.0004;AN=2184;AC=324;LDAF=0.1485;RSQ=0.9916;VT=SNP;AA=A;AVGPOST=0.997;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.15;ASN_AF=0.0035;AMR_AF=0.18;AFR_AF=0.06;EUR_AF=0.3	GT:DS:GL	1|1:2:-5,-1.71,-0.01	0|0:0:-0.02,-1.34,-5	0|0:0:-0,-2.06,-5	1|0:1.05:-5,-1.23,-0.03	0|0:0:-0.01,-1.82,-5
22	50528569	rs12628964	A	T	100	PASS	RSQ=0.9565;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=531;VT=SNP;AA=A;ERATE=0.0029;AVGPOST=0.98;LDAF=0.2445;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.12;EUR_AF=0.23	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	1|1:1.9:-4.4,-0.25,-0.36	0|0:0:-0.08,-0.79,-3.18	0|0:0:-0.19,-0.46,-2.35	0|0:0:-0.48,-0.48,-0.48
22	50528623	rs117477158	C	A	100	PASS	THETA=0.0009;ERATE=0.0004;LDAF=0.0729;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=154;AVGPOST=0.9947;VT=SNP;RSQ=0.9716;AF=0.07;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.09	GT:DS:GL	0|0:0:-0.11,-0.65,-4.4	1|0:1:-2.89,-0.49,-0.17	0|0:0:-0.13,-0.61,-2.22	0|0:0:-0.19,-0.46,-2.35	0|0:0:-0.48,-0.48,-0.48
22	50529134	rs8142824	T	C	100	PASS	AC=483;THETA=0.0004;LDAF=0.2214;AA=T;AN=2184;RSQ=0.9715;VT=SNP;AVGPOST=0.9858;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.22;ASN_AF=0.28;AMR_AF=0.31;AFR_AF=0.09;EUR_AF=0.22	GT:DS:GL	0|0:0:-0.01,-1.73,-5	1|0:1:-5,0,-5	0|0:0:-0.01,-1.5,-5	0|0:0:-0.1,-0.67,-4.22	0|0:0:0,-5,-5
22	50529468	rs151002939	G	A	100	PASS	AA=G;AN=2184;RSQ=0.0496;THETA=0.0005;AVGPOST=0.9996;VT=SNP;AC=0;SNPSOURCE=LOWCOV;LDAF=0.0002;ERATE=0.0003;AF=0	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0.02,-1.32,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.11,-0.65,-4.1	0|0:0:-0,-2.12,-5
22	50529850	rs56144269	T	C	100	PASS	AA=T;AN=2184;VT=SNP;AVGPOST=0.9908;AC=175;SNPSOURCE=LOWCOV;LDAF=0.0806;ERATE=0.0003;RSQ=0.9538;THETA=0.0003;AF=0.08;ASN_AF=0.0035;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.17	GT:DS:GL	1|1:2:-5,-1.36,-0.02	0|0:0:-0.04,-1.07,-5	0|0:0:-0.01,-1.56,-5	1|0:0.55:-0.03,-1.2,-5	0|0:0:-0,-4,-5
22	50529874	rs186161365	C	T	100	PASS	AA=C;RSQ=0.6838;LDAF=0.0016;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.01,-1.8,-5	0|0:0:-0.02,-1.45,-5	0|0:0:-0,-3.55,-5
22	50530286	rs183015893	C	G	100	PASS	AA=C;AN=2184;VT=SNP;LDAF=0.0007;RSQ=0.8078;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.49,-5	0|0:0:-0,-2.91,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50531626	rs148371877	G	A	100	PASS	LDAF=0.0027;THETA=0.0004;AA=G;AN=2184;AC=6;VT=SNP;AVGPOST=0.9993;RSQ=0.8838;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.11,-0.65,-4.22	0|0:0:-0.12,-0.6,-3.8	0|0:0:-0.2,-0.44,-2.01	0|0:0:-0.19,-0.47,-2.1	0|0:0:-0.12,-0.62,-3.85
22	50532061	rs188452957	C	G	100	PASS	AVGPOST=0.9985;AA=C;LDAF=0.0016;AN=2184;VT=SNP;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;RSQ=0.6588;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-2.98,-5	0|0:0:-0.13,-0.58,-2.68	0|0:0:-0.12,-0.62,-3.92	0|0:0:-0.01,-1.65,-5	0|0:0:-0.01,-1.76,-5
22	50533030	rs4838821	G	A	100	PASS	RSQ=0.9926;AVGPOST=0.9966;AA=G;AN=2184;AC=523;THETA=0.0005;LDAF=0.2389;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.24;ASN_AF=0.31;AMR_AF=0.33;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:-0.03,-1.2,-5	1|1:2:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.2,-0.44,-2.11	0|0:0:-0.48,-0.48,-0.48
22	50534793	rs138916282	A	G	100	PASS	AN=2184;RSQ=0.8411;VT=SNP;THETA=0.0006;AA=A;LDAF=0.0029;AC=5;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0,-3.36,-5	0|0:0:-0.01,-1.55,-5	0|0:0:-0.01,-1.5,-5	0|0:0:-0.01,-1.85,-5
22	50536128	rs146191501	T	G	100	PASS	LDAF=0.0071;AA=T;AN=2184;AC=16;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9506;THETA=0.0003;AVGPOST=0.9992;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.04,-5	0|0:0:-0,-3.85,-5	0|0:0:-0,-3.34,-5	0|0:0:-0.03,-1.18,-5	0|0:0:-0,-3.42,-5
22	50536927	rs149722336	T	C	100	PASS	AC=47;RSQ=0.9931;AA=T;AN=2184;LDAF=0.0216;AVGPOST=0.9997;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0.07,-0.85,-5	0|0:0:-0.01,-1.85,-5	0|0:0:-0.19,-0.46,-2.34	0|0:0:-0.01,-1.77,-5
22	50537468	rs191842042	A	C	100	PASS	AN=2184;THETA=0.0005;VT=SNP;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;RSQ=0.685;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-3.49,-5	0|0:0:-0,-3.34,-5	0|0:0:-0,-3.07,-5	0|0:0:-0.01,-1.72,-5	0|0:0:-0,-2.6,-5
22	50537712	rs151276464	G	A	100	PASS	THETA=0.0002;AA=G;AN=2184;VT=SNP;LDAF=0.0064;AC=14;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;RSQ=0.9932;AF=0.01;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.02,-1.28,-5	0|0:0:-0.01,-1.69,-5	0|0:0:-0,-3.66,-5	0|0:0:-0,-3.32,-5
22	50537752	rs55710521	C	T	100	PASS	RSQ=0.9992;AA=C;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;AC=375;LDAF=0.1715;ERATE=0.0003;THETA=0.0003;AF=0.17;ASN_AF=0.0035;AMR_AF=0.19;AFR_AF=0.16;EUR_AF=0.3	GT:DS:GL	1|1:2:-5,-5,0	0|0:0:-0,-2.02,-5	0|0:0:-0,-2.68,-5	1|0:1:-5,0,-5	0|0:0:-0,-4.7,-5
22	50538191	rs113446472	A	G	100	PASS	ERATE=0.0004;RSQ=0.9902;AN=2184;VT=SNP;AA=A;LDAF=0.0716;AC=156;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.9982;AF=0.07;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.03;EUR_AF=0.09	GT:DS:GL	0|0:0:-0,-4,-5	1|0:1:-1.55,-0.01,-5	0|0:0:-0,-2.03,-5	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-2.53,-5
22	50538271	rs116408971	A	G	100	PASS	LDAF=0.0041;THETA=0.0002;AN=2184;VT=SNP;AA=A;AC=9;RSQ=0.9894;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.9,-5	0|0:0:-0,-2.58,-5	0|0:0:-0,-4.7,-5	0|0:0:-0.03,-1.19,-5	0|0:0:-0,-4.7,-5
22	50538637	rs115937229	G	A	100	PASS	AC=7;AN=2184;LDAF=0.004;AVGPOST=0.9975;VT=SNP;AA=-;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.772;THETA=0.0003;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.15,-5	0|0:0:-0.03,-1.25,-5	0|0:0:-0.05,-1.01,-5	0|0:0:-0.03,-1.15,-5	0|0:0:-0.07,-0.85,-5
22	50539025	rs145232140	C	G	100	PASS	AA=C;THETA=0.0002;LDAF=0.0218;AN=2184;AC=46;VT=SNP;AVGPOST=0.9953;RSQ=0.9125;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.04	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.13,-0.58,-3.49	0|1:0.95:-0.48,-0.48,-0.48	1|0:1.2:-3.18,-0.49,-0.17
22	50539413	rs138209	T	C	100	PASS	AA=C;AN=2184;LDAF=0.4371;ERATE=0.0047;VT=SNP;AVGPOST=0.9778;SNPSOURCE=LOWCOV;RSQ=0.9658;AC=956;THETA=0.0003;AF=0.44;ASN_AF=0.35;AMR_AF=0.56;AFR_AF=0.31;EUR_AF=0.53	GT:DS:GL	1|1:2:-5,-2.23,-0	1|1:1.6:-5,-0.57,-0.13	0|0:0:-0.01,-1.58,-5	0|0:0.35:-0.19,-0.45,-2.26	0|0:0:-0.01,-1.61,-5
22	50542490	rs186159763	A	G	100	PASS	ERATE=0.0005;LDAF=0.0021;THETA=0.0004;AN=2184;AVGPOST=0.9975;VT=SNP;RSQ=0.5502;AA=A;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.03,-1.25,-5	0|0:0:-0.07,-0.8,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0.09,-0.73,-4.7
22	50543122	rs144387281	A	G	100	PASS	AC=7;ERATE=0.0004;THETA=0.0002;AN=2184;AVGPOST=0.9979;RSQ=0.7745;VT=SNP;LDAF=0.0034;AA=A;SNPSOURCE=LOWCOV;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.34,-5	0|0:0:-0.01,-1.84,-5	0|0:0:-0.01,-1.85,-5	0|0:0:-0.03,-1.18,-5	0|0:0:-0.11,-0.64,-4
22	50543316	rs8140123	C	G	100	PASS	ERATE=0.0005;LDAF=0.2416;AA=G;AN=2184;RSQ=0.9953;AC=528;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9978;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.12;EUR_AF=0.23	GT:DS:GL	0|0:0:-0.05,-0.94,-5	1|1:2:-0.48,-0.48,-0.48	0|0:0:-0.02,-1.31,-5	0|0:0:-0.09,-0.73,-4.4	0|0:0:-0.48,-0.48,-0.48
22	50543784	rs141424920	G	A	100	PASS	LDAF=0.0346;AA=g;RSQ=0.984;AN=2184;VT=SNP;AC=75;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.03;ASN_AF=0.04;AMR_AF=0.06;AFR_AF=0.002;EUR_AF=0.04	GT:DS:GL	0|0:0:-0.01,-1.7,-5	0|0:0:-0,-2.42,-5	0|0:0:-0,-2.41,-5	0|0:0.05:-0.1,-0.69,-4.1	0|0:0:-0,-3.32,-5
22	50543845	rs193004243	T	A	100	PASS	AA=T;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.8,-5	0|0:0:-0,-4.1,-5	0|0:0:-0,-3.3,-5	0|0:0:-0.01,-1.77,-5	0|0:0:-0.01,-1.88,-5
22	50544714	rs143638711	G	C	100	PASS	ERATE=0.0004;RSQ=0.8505;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.9967;VT=SNP;AC=14;LDAF=0.0074;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AMR_AF=0.0028;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.15,-5	0|0:0:-0.02,-1.26,-5	0|0:0:-0.01,-1.77,-5	0|0:0:-0.18,-0.48,-2.2	0|0:0:-0.04,-1.1,-5
22	50545223	rs4838833	C	T	100	PASS	AC=525;AVGPOST=0.9966;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9923;AA=c;ERATE=0.0008;LDAF=0.2413;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:-0.01,-1.76,-5	1|1:2:-0.48,-0.48,-0.48	0|0:0:-0.22,-0.42,-1.75	0|0:0:-0.2,-0.45,-1.95	0|0:0:-0.13,-0.59,-3.59
22	50545734	rs146946455	A	G	100	PASS	AVGPOST=0.9896;AN=2184;VT=SNP;ERATE=0.001;LDAF=0.0956;AA=A;RSQ=0.9494;AC=210;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.1;ASN_AF=0.12;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.09	GT:DS:GL	0|0:0:-0,-1.95,-5	1|0:1.05:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.64,-4	0|0:0:-0.48,-0.48,-0.48
22	50547031	rs117447913	C	T	100	PASS	AC=47;AN=2184;RSQ=0.9939;AVGPOST=0.9996;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0217;THETA=0.0003;AF=0.02;ASN_AF=0.04;AMR_AF=0.04;EUR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.03,-1.24,-5	0|0:0:-0,-3.92,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50547389	rs4838801	C	T	100	PASS	AN=2184;RSQ=0.9993;VT=SNP;AA=c;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=308;ERATE=0.0003;LDAF=0.1409;THETA=0.0003;AF=0.14;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.13	GT:DS:GL	0|0:0:0,-5,-5	0|1:1:-0.22,-0.4,-5	0|0:0:-0,-2.13,-5	0|0:0:-0,-3.08,-5	0|0:0:0,-5,-5
22	50548747	rs11703632	C	G	100	PASS	LDAF=0.2045;AA=G;AN=2184;VT=SNP;AC=456;RSQ=0.9183;SNPSOURCE=LOWCOV;AVGPOST=0.9605;ERATE=0.0007;THETA=0.0003;AF=0.21;ASN_AF=0.26;AMR_AF=0.31;AFR_AF=0.1;EUR_AF=0.19	GT:DS:GL	0|0:0:-0.12,-0.63,-4.1	1|1:1.9:-0.48,-0.48,-0.48	0|0:0:-0.23,-0.41,-1.65	0|0:0:-0.18,-0.48,-2.21	0|0:0:-0.48,-0.48,-0.48
22	50549177	rs141049779	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;THETA=0.0005;VT=SNP;AC=14;AVGPOST=0.9954;SNPSOURCE=LOWCOV;LDAF=0.0076;RSQ=0.7716;AF=0.01;ASN_AF=0.02;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.18,-0.47,-2.41	0|0:0:-0.17,-0.49,-2.58	0|0:0:-0.06,-0.86,-5	0|0:0:-0.07,-0.84,-5	0|0:0:-0.22,-0.42,-1.74
22	50551824	rs2340597	A	G	100	PASS	RSQ=0.9988;AN=2184;VT=SNP;AC=526;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.2407;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:-0,-4,-5	1|1:2:-5,-1.57,-0.01	0|0:0:-0,-3.06,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0,-3.8,-5
22	50553013	rs149927638	C	T	100	PASS	AVGPOST=1;LDAF=0.0009;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0006;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50553066	.	G	A	100	PASS	RSQ=0.8284;AA=G;AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50553086	.	G	A	100	PASS	AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.22,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50553733	rs59000831	G	T	100	PASS	RSQ=0.9813;THETA=0.0002;AA=G;AN=2184;VT=SNP;ERATE=0.0008;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9999;AF=0.0023;ASN_AF=0.01;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50553764	rs182709817	C	A	100	PASS	AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50554238	rs148109362	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;RSQ=0.5494;VT=SNP;LDAF=0.0026;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0,-2.03,-5	0|0:0:-0.03,-1.19,-5	0|0:0:-0,-2.15,-5
22	50554311	rs181684532	G	A	100	PASS	AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4217;AVGPOST=0.9984;LDAF=0.0012;ERATE=0.0007;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.02,-1.44,-5	0|0:0.15:-0.19,-0.47,-2.28	0|0:0:-0.22,-0.46,-1.26	0|0:0:-0.01,-1.71,-5	0|0:0:-0.03,-1.14,-5
22	50554345	rs143223565	G	A	100	PASS	LDAF=0.0066;AA=G;AN=2184;AC=13;VT=SNP;RSQ=0.8838;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AVGPOST=0.9982;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.75,-5	0|0:0.2:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-2.24	0|0:0:-0.01,-1.55,-5	0|0:0:-0.06,-0.9,-5
22	50555704	rs151215930	T	C	100	PASS	AVGPOST=1;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50556163	rs190595594	C	A	100	PASS	AA=C;LDAF=0.0016;AN=2184;VT=SNP;RSQ=0.7764;AVGPOST=0.9991;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.76,-5	0|0:0:-0.01,-1.74,-5	0|0:0:-0.19,-0.45,-2.15	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.02,-1.3,-5
22	50556217	rs183189379	A	C	100	PASS	LDAF=0.0009;AN=2184;THETA=0.0001;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6494;AVGPOST=0.9992;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.08,-5	0|0:0:-0.01,-1.58,-5	0|0:0:-0.01,-1.56,-5	0|0:0:-0,-2.01,-5	0|0:0:-0.18,-0.47,-3.09
22	50557431	rs143183796	G	A	100	PASS	AA=G;AN=2184;RSQ=0.8251;AVGPOST=0.9996;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.01,-1.69,-5	0|0:0:-0,-2.54,-5	0|0:0:-0.01,-1.56,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0,-2.44,-5
22	50557614	rs78566519	G	A	100	PASS	THETA=0.0002;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.0029;RSQ=0.9261;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.0027;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.16,-5	0|0:0:-0,-1.98,-5	0|0:0:-0,-2.48,-5	0|0:0:-0.09,-0.75,-5	0|0:0:-0,-3.13,-5
22	50557640	rs62241110	C	T	100	PASS	THETA=0.0009;ERATE=0.0004;AVGPOST=0.9986;AA=C;AN=2184;VT=SNP;LDAF=0.1426;RSQ=0.9956;SNPSOURCE=LOWCOV;AC=312;AF=0.14;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.14	GT:DS:GL	0|0:0:-0.97,-0.05,-5	0|1:1:-5,-0.02,-1.37	0|0:0:-0,-2.89,-5	0|0:0:-0.06,-0.89,-5	0|0:0:-0,-2.1,-5
22	50559055	rs189564312	G	A	100	PASS	AVGPOST=1;LDAF=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.95;VT=SNP;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50559899	.	AT	A	252	PASS	THETA=0.0004;LDAF=0.0291;AN=2184;VT=INDEL;RSQ=0.9413;AC=64;ERATE=0.0006;AVGPOST=0.996;AF=0.03;AMR_AF=0.01;AFR_AF=0.12	GT:DS:GL	0|0:0:0,-1.2,-19.2	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,-0.6,-9.6	0|0:0:0,0,0
22	50561456	rs138235	C	T	100	PASS	AA=C;THETA=0.0002;AVGPOST=0.9966;AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.9904;LDAF=0.1545;SNPSOURCE=LOWCOV;AC=337;AF=0.15;ASN_AF=0.0035;AMR_AF=0.17;AFR_AF=0.1;EUR_AF=0.29	GT:DS:GL	1|1:2:-5,-2.51,-0	0|0:0.5:-0.02,-1.29,-5	0|0:0:-0,-2.75,-5	1|0:1:-1.57,-0.03,-1.45	0|0:0:-0.13,-0.6,-3.7
22	50561801	rs150454370	A	G	100	PASS	AVGPOST=0.9985;AC=18;LDAF=0.0083;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9293;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0,-2.35,-5	0|0:0:-0.04,-1.09,-5	0|0:0:-0.01,-1.71,-5	0|0:0:-0.02,-1.3,-5
22	50562178	rs183903588	T	C	100	PASS	AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6768;ERATE=0.0003;THETA=0.0003;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.68,-5	0|0:0:-0,-3.62,-5	0|0:0:-0.01,-1.85,-5	0|0:0:-0.05,-0.99,-5	0|0:0:-0,-2.35,-5
22	50562311	rs8141590	G	C	100	PASS	ERATE=0.0004;LDAF=0.2416;AA=G;AN=2184;VT=SNP;RSQ=0.9983;THETA=0.0006;AVGPOST=0.9991;AC=527;SNPSOURCE=LOWCOV;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:-0.01,-1.78,-5	1|1:2:-5,-1.68,-0.01	0|0:0:-0,-3.1,-5	0|0:0:-0,-2.62,-5	0|0:0:-0,-3.12,-5
22	50562803	rs4838840	A	C	100	PASS	ERATE=0.0004;THETA=0.0002;AN=2184;LDAF=0.0994;VT=SNP;AC=216;AVGPOST=0.998;AA=A;RSQ=0.9913;SNPSOURCE=LOWCOV;AF=0.1;ASN_AF=0.12;AMR_AF=0.17;AFR_AF=0.03;EUR_AF=0.09	GT:DS:GL	0|0:0:-0.01,-1.49,-5	1|0:1:-5,-0,-3.7	0|0:0:-0,-2.63,-5	0|0:0:-0,-2.03,-5	0|0:0:-0,-2.93,-5
22	50563585	rs189042973	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0,-2.25,-5	0|0:0:-0.01,-1.73,-5	0|0:0:-0.01,-1.58,-5	0|0:0:-0,-2.25,-5	0|0:0:-0.01,-1.69,-5
22	50564181	rs138240	G	T	100	PASS	THETA=0.0002;RSQ=0.9996;AA=T;AN=2184;VT=SNP;LDAF=0.4154;AVGPOST=0.9998;AC=908;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.42;ASN_AF=0.32;AMR_AF=0.53;AFR_AF=0.29;EUR_AF=0.52	GT:DS:GL	1|1:2:-5,-5,0	1|1:2:-5,-4.1,-0	0|0:0:-0,-2.06,-5	1|0:1:-5,0,-5	0|0:0:-0,-4.7,-5
22	50564442	rs9617034	C	T	100	PASS	ERATE=0.0004;RSQ=0.9807;AA=C;AN=2184;VT=SNP;LDAF=0.2299;SNPSOURCE=LOWCOV;AC=504;AVGPOST=0.9898;THETA=0.0003;AF=0.23;ASN_AF=0.31;AMR_AF=0.32;AFR_AF=0.1;EUR_AF=0.22	GT:DS:GL	0|0:0:-0,-3.12,-5	1|1:1.6:-0.48,-0.48,-0.48	0|0:0:-0.03,-1.21,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0.01,-1.93,-5
22	50564874	rs187915944	A	G	100	PASS	THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.854;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.4,-5	0|0:0:-0,-4.4,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5
22	50565911	rs144478052	C	T	100	PASS	ERATE=0.0004;LDAF=0.0024;AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.9109;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0023;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-2.02,-5	0|0:0:-0.01,-1.54,-5	0|0:0:-0,-2.53,-5	0|0:0:-0,-2.01,-5	0|0:0:-0,-3.42,-5
22	50565925	rs148013695	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;RSQ=0.8056;AVGPOST=0.9972;VT=SNP;LDAF=0.0063;SNPSOURCE=LOWCOV;AC=11;THETA=0.0003;AF=0.01;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.01,-1.77,-5	0|0:0:-0,-2.27,-5	0|0:0:-0.01,-1.47,-5	0|0:0:-0,-2.92,-5
22	50565974	rs12167156	G	A	100	PASS	ERATE=0.0004;THETA=0.0002;LDAF=0.0035;AA=G;AN=2184;AVGPOST=0.9981;AC=6;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7848;AF=0.0027;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.07,-0.84,-4.4	0|0:0:-0.04,-1.04,-5	0|0:0:-0.06,-0.92,-5	0|0:0:-0,-2.35,-5
22	50566781	rs4838809	T	G	100	PASS	AVGPOST=1;AA=T;AN=2184;THETA=0.0001;LDAF=0.2422;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=529;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:0,-5,-5	1|1:2:-5,-5,0	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50566835	rs13055917	C	T	100	PASS	AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;LDAF=0.2422;VT=SNP;RSQ=1;ERATE=0.0003;AC=529;THETA=0.0003;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:0,-5,-5	1|1:2:-5,-5,0	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50568679	rs183928367	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;LDAF=0.0032;AVGPOST=0.9975;THETA=0.0005;VT=SNP;AC=5;SNPSOURCE=LOWCOV;RSQ=0.7204;AF=0.0023;ASN_AF=0.01;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.06,-0.88,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0.14,-0.57,-3.05	0|0:0:-0.11,-0.64,-4
22	50568726	rs188642769	T	A	100	PASS	ERATE=0.0004;LDAF=0.0013;RSQ=0.4322;THETA=0.0004;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9984;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.07,-0.81,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0.19,-0.46,-2.18
22	50569790	rs138249	C	T	100	PASS	RSQ=0.9892;AC=1054;ERATE=0.0023;LDAF=0.4836;AA=T;AN=2184;VT=SNP;AVGPOST=0.993;SNPSOURCE=LOWCOV;THETA=0.0016;AF=0.48;ASN_AF=0.36;AMR_AF=0.58;AFR_AF=0.45;EUR_AF=0.55	GT:DS:GL	1|1:2:-5,-1.37,-0.02	1|1:2:-5,-1.58,-0.01	0|0:0:-0,-2.19,-5	1|0:1:-5,-0.05,-0.94	0|0:0:-0,-2.53,-5
22	50569849	rs183975820	C	T	100	PASS	AVGPOST=0.9985;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;RSQ=0.6075;LDAF=0.0012;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-2.62,-5	0|0:0:-0,-3.32,-5	0|0:0:-0,-4,-5	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-2.37,-5
22	50570138	rs4838845	A	G	100	PASS	ERATE=0.0005;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.2421;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=529;RSQ=0.9979;AF=0.24;ASN_AF=0.31;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:-0.03,-1.22,-5	1|1:2:-5,-1.25,-0.02	0|0:0:-0.01,-1.55,-5	0|0:0:-0.03,-1.16,-5	0|0:0:-0.48,-0.48,-0.48
22	50570598	rs139793650	A	G	100	PASS	THETA=0.0002;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.6548;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.01,-1.79,-5	0|0:0:-0,-2.58,-5	0|0:0:-0,-3.38,-5	0|0:0:-0.18,-0.48,-2.18	0|0:0:-0,-2.58,-5
22	50570852	rs138251	A	G	100	PASS	THETA=0.0004;AA=G;AN=2184;AC=1440;AVGPOST=0.9952;LDAF=0.6587;VT=SNP;ERATE=0.001;RSQ=0.9913;SNPSOURCE=LOWCOV;AF=0.66;ASN_AF=0.71;AMR_AF=0.71;AFR_AF=0.49;EUR_AF=0.71	GT:DS:GL	1|1:2:-5,-0.9,-0.06	1|1:2:-5,-2.46,-0	0|1:1:-5,-0,-3.8	1|0:1:-5,-0.67,-0.1	0|0:0:-0,-4.22,-5
22	50570870	rs187389118	A	T	100	PASS	THETA=0.0014;AN=2184;AVGPOST=0.9997;LDAF=0.0015;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;RSQ=0.9134;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0.07,-0.84,-5	0|0:0:-0,-4.4,-5	0|0:0:-0.36,-0.41,-0.78	0|0:0:-0,-3.92,-5
22	50570873	rs138252	G	T	100	PASS	AC=1052;AVGPOST=0.9957;LDAF=0.4813;THETA=0.0004;AA=T;AN=2184;RSQ=0.9927;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;AF=0.48;ASN_AF=0.37;AMR_AF=0.58;AFR_AF=0.44;EUR_AF=0.55	GT:DS:GL	1|1:2:-5,-1.43,-0.02	1|1:2:-5,-0.72,-0.09	0|0:0:-0,-3.7,-5	1|0:1:-0.48,-0.48,-0.48	0|0:0:-0,-3.85,-5
22	50571048	rs190633797	T	C	100	PASS	ERATE=0.0005;THETA=0.0002;AA=T;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;RSQ=0.5004;AVGPOST=0.9978;AC=3;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0.21,-0.43,-1.94	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.01,-1.77,-5	0|0:0:-0.06,-0.86,-5
22	50572473	rs2340601	G	A	100	PASS	SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=530;RSQ=0.9998;LDAF=0.2427;THETA=0.0043;ERATE=0.0003;AVGPOST=0.9999;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:0,-5,-5	1|1:2:-5,-5,0	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50574306	rs144146499	T	C	100	PASS	AA=T;AN=2184;VT=SNP;RSQ=0.5117;AVGPOST=0.9973;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.0041;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.61,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.39,-5	0|0:0:-0.03,-1.15,-5	0|0:0:-0,-3.17,-5
22	50576210	rs186514987	C	T	100	PASS	AA=C;RSQ=0.8169;AN=2184;AC=424;ERATE=0.0031;VT=SNP;AVGPOST=0.9218;THETA=0.0006;LDAF=0.1968;SNPSOURCE=LOWCOV;AF=0.19;ASN_AF=0.22;AMR_AF=0.3;AFR_AF=0.11;EUR_AF=0.18	GT:DS:GL	0|0:0:-0.01,-1.79,-5	1|1:1.95:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.91,-5	0|0:0:-0.48,-0.48,-0.48
22	50576367	rs182676154	A	T	100	PASS	ERATE=0.0005;THETA=0.0004;RSQ=0.6912;AN=2184;VT=SNP;LDAF=0.0019;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=3;AF=0.0014;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.01,-1.52,-5	0|0:0:-0.01,-1.6,-5	0|0:0:-0.01,-1.83,-5	0|0:0:-0.05,-0.97,-5	0|0:0:-0,-2.4,-5
22	50576684	rs192551088	C	T	100	PASS	AA=C;RSQ=0.6495;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.18,-0.47,-2.45	0|0:0:-0,-3.09,-5	0|0:0:-0,-2.04,-5	0|0:0:-0.05,-0.99,-5	0|0:0:-0.01,-1.55,-5
22	50579501	rs189041371	G	A	100	PASS	AVGPOST=0.9963;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0007;RSQ=0.3016;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.14,-0.56,-3.42	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-2.42	0|0:0:-0.18,-0.47,-3.09
22	50580699	rs9617102	C	T	100	PASS	AC=316;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9995;SNPSOURCE=LOWCOV;LDAF=0.1444;ERATE=0.0003;AVGPOST=0.9999;AF=0.14;ASN_AF=0.19;AMR_AF=0.17;AFR_AF=0.08;EUR_AF=0.14	GT:DS:GL	0|0:0:0,-5,-5	0|1:1:-5,0,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5
22	50581157	rs144955385	C	T	100	PASS	THETA=0.0009;ERATE=0.0004;AA=C;AN=2184;RSQ=0.8706;LDAF=0.0032;AC=6;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AF=0.0027;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.65,-5	0|0:0:-0.19,-0.46,-2.26	0|0:0:-0.12,-0.62,-4	0|0:0:-0.03,-1.13,-5	0|0:0:-0.01,-1.76,-5
22	50581890	rs760750	C	A	100	PASS	ERATE=0.0005;THETA=0.0022;AN=2184;VT=SNP;AA=A;LDAF=0.2453;RSQ=0.994;SNPSOURCE=LOWCOV;AC=533;AVGPOST=0.9965;AF=0.24;ASN_AF=0.32;AMR_AF=0.34;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:0,-5,-5	1|1:2:-5,-3.8,-0	0|0:0:-0,-2.57,-5	0|0:0:-0.03,-1.21,-5	0|0:0:0,-5,-5
22	50582232	rs184262093	T	C	100	PASS	AVGPOST=1;THETA=0.0004;AA=T;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-2.83,-5	0|0:0:-0,-2.29,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5
22	50583211	rs59020637	C	T	100	PASS	AC=30;AA=C;AN=2184;ERATE=0.0009;VT=SNP;LDAF=0.019;SNPSOURCE=LOWCOV;RSQ=0.7449;AVGPOST=0.9866;THETA=0.0003;AF=0.01;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.06,-0.86,-5	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50583257	rs71316586	G	A	100	PASS	LDAF=0.1144;AA=g;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0008;AVGPOST=0.9317;SNPSOURCE=LOWCOV;AC=238;RSQ=0.7646;AF=0.11;ASN_AF=0.13;AMR_AF=0.14;AFR_AF=0.1;EUR_AF=0.09	GT:DS:GL	0|0:0:-0.11,-0.66,-4.4	0|0:0:-0.48,-0.48,-0.48	0|0:0.4:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.47,-2.1	0|0:0:-0.48,-0.48,-0.48
22	50583682	rs9617105	G	A	100	PASS	AVGPOST=0.9945;THETA=0.0004;AA=G;AN=2184;RSQ=0.9896;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=533;LDAF=0.2439;AF=0.24;ASN_AF=0.31;AMR_AF=0.35;AFR_AF=0.11;EUR_AF=0.23	GT:DS:GL	0|0:0:-0,-2.08,-5	1|1:2:-2.89,-0.49,-0.17	0|0:0:-0.07,-0.82,-5	0|0:0:-0.19,-0.46,-2.04	0|0:0:-0.11,-0.65,-4.1
22	50583968	rs150428804	A	G	100	PASS	AVGPOST=1;LDAF=0.0009;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50584820	rs187751257	C	A	100	PASS	ERATE=0.0004;THETA=0.0002;LDAF=0.0187;AN=2184;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AVGPOST=0.995;AC=39;RSQ=0.9068;AF=0.02;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.03	GT:DS:GL	0|0:0:-0,-2.65,-5	0|0:0:-0.07,-0.8,-3.42	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.19,-0.46,-2.42	0|0:0:-0.18,-0.47,-3.06
22	50585136	rs116251293	G	A	100	PASS	ERATE=0.0004;AA=g;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0113;AC=24;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.9634;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.03,-1.17,-5	0|0:0:-0.08,-0.8,-5	0|0:0:-0.2,-0.44,-2.04	0|0:0:-0.12,-0.63,-3.92	0|0:0:-0.19,-0.46,-2.15
22	50585626	rs4838852	A	G	100	PASS	THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9166;ERATE=0.0353;SNPSOURCE=LOWCOV;AC=1127;LDAF=0.5087;RSQ=0.8871;AA=N;AF=0.52;ASN_AF=0.35;AMR_AF=0.62;AFR_AF=0.61;EUR_AF=0.53	GT:DS:GL	1|1:1.95:-5,-1.46,-0.02	1|1:1.95:-5,-1.82,-0.01	0|0:0:0,-5,-5	0|1:0.6:-0.06,-0.87,-5	0|1:0.95:-2.07,-0,-5
22	50585663	rs56281345	C	G	100	PASS	THETA=0.0004;AN=2184;VT=SNP;AC=68;RSQ=0.7798;ERATE=0.0008;LDAF=0.035;SNPSOURCE=LOWCOV;AVGPOST=0.9788;AA=N;AF=0.03;ASN_AF=0.0035;AMR_AF=0.03;AFR_AF=0.01;EUR_AF=0.07	GT:DS:GL	0|0:0:-0.19,-0.46,-2.25	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.92,-3.85	0|0:0.5:-0.48,-0.48,-0.48	0|0:0:-0.08,-0.78,-5
22	50590374	rs145986014	G	A	100	PASS	THETA=0.0009;ERATE=0.0004;LDAF=0.0013;RSQ=0.7265;AN=2184;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=2;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0.02,-1.26,-5	0|0:0:-0.08,-0.79,-4.7	0|0:0:-0.02,-1.27,-5	0|0:0:-0.11,-0.64,-4.1
22	50590965	rs184393729	T	C	100	PASS	ERATE=0.0004;THETA=0.0004;AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7732;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004	GT:DS:GL	0|0:0:-0,-2.9,-5	0|0:0:-0.01,-1.75,-5	0|0:0:-0.02,-1.43,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0.1,-0.67,-5
22	50592200	rs181086133	C	T	100	PASS	AVGPOST=0.9994;AN=2184;VT=SNP;AA=.;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5458;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.02,-1.46,-5	0|0:0:-0,-2.96,-5	0|0:0:-0,-3.13,-5	0|0:0:-0,-2.04,-5	0|0:0:-0.01,-1.8,-5
22	50592524	rs11914077	G	A	100	PASS	LDAF=0.0042;AN=2184;RSQ=0.9895;VT=SNP;AA=.;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;THETA=0.0003;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0,-3.05,-5	0|0:0:-0,-3.38,-5	0|0:0:-0.1,-0.67,-4.22	0|0:0:-0.04,-1.06,-5
22	50594459	rs186724247	C	T	100	PASS	AN=2184;RSQ=0.8207;VT=SNP;AA=.;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0012;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.06,-0.9,-5	0|0:0:-0,-3.74,-5	0|0:0:-0,-3.1,-5	0|0:0:-0.18,-0.48,-2.2	0|0:0:-0.06,-0.86,-5
22	50595387	rs187404143	A	G	100	PASS	ERATE=0.0004;LDAF=0.0013;AN=2184;VT=SNP;AA=.;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.7221;THETA=0.0007;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.03,-1.13,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-3.4,-5	0|0:0:-0,-2.93,-5	0|0:0:-0,-2.91,-5
22	50595622	rs10427578	C	T	100	PASS	LDAF=0.1718;THETA=0.0002;AN=2184;VT=SNP;AA=.;ERATE=0.0017;AC=373;SNPSOURCE=LOWCOV;RSQ=0.9854;AVGPOST=0.9941;AF=0.17;ASN_AF=0.33;AMR_AF=0.13;AFR_AF=0.06;EUR_AF=0.14	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0.01,-1.7,-5	0|1:1:-5,0,-5	0|0:0:-0.02,-1.43,-5	0|0:0:-0,-2.3,-5
22	50595641	rs5771193	T	G	100	PASS	ERATE=0.0004;RSQ=0.9966;THETA=0.0004;AN=2184;AC=382;VT=SNP;AA=.;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.1753;AF=0.17;ASN_AF=0.22;AMR_AF=0.17;AFR_AF=0.13;EUR_AF=0.17	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0,-3.38,-5	1|0:0.95:-0.02,-1.34,-5	0|0:0:-0.01,-1.47,-5	0|0:0:-0,-2.11,-5
22	50596984	rs189347010	T	A	100	PASS	THETA=0.0002;AN=2184;VT=SNP;AA=.;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8513;AVGPOST=0.9992;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.34,-5	0|0:0:-0,-2.05,-5	0|0:0:-0.01,-1.59,-5	0|0:0:-0.05,-0.92,-5	0|0:0:-0.01,-1.6,-5
22	50597274	rs185921944	T	C	100	PASS	LDAF=0.0021;THETA=0.0002;AVGPOST=0.9994;AN=2184;VT=SNP;AA=.;RSQ=0.9152;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.01,-1.8,-5	0|0:0:-0,-3.62,-5	0|0:0.05:-0.01,-1.68,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0,-2.41,-5
22	50597592	rs181748678	T	C	100	PASS	LDAF=0.0013;AN=2184;VT=SNP;AA=.;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;THETA=0.0003;RSQ=0.6948;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.15,-5	0|0:0:-0,-3.13,-5	0|0:0:-0,-2.02,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0,-2.89,-5
22	50598768	rs186100701	C	T	100	PASS	LDAF=0.026;THETA=0.0002;AVGPOST=0.9698;AN=2184;VT=SNP;AA=.;ERATE=0.0016;RSQ=0.5356;SNPSOURCE=LOWCOV;AC=36;AF=0.02;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.15,-0.53,-3.19	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-1.99	0|0:0:-0.18,-0.47,-3.11
22	50599383	rs183806586	T	C	100	PASS	AVGPOST=1;LDAF=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.95;THETA=0.0005;VT=SNP;AA=.;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50599491	rs187838910	G	A	100	PASS	AVGPOST=1;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=.;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50600392	rs192951741	G	A	100	PASS	ERATE=0.0004;AN=2184;THETA=0.0008;VT=SNP;AA=.;RSQ=0.3842;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0.05:-0.19,-0.45,-2.15	0|0:0:-0.18,-0.48,-2.17	0|0:0:-0.11,-0.65,-4.7
22	50601319	rs760755	T	G	100	PASS	AVGPOST=0.9945;RSQ=0.9782;AN=2184;AC=1957;LDAF=0.8949;VT=SNP;AA=.;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0006;AF=0.9;ASN_AF=0.96;AMR_AF=0.91;AFR_AF=0.87;EUR_AF=0.86	GT:DS:GL	1|1:2:-5,-0.68,-0.1	1|1:2:-5,-2.55,-0	1|1:2:-5,-0.91,-0.06	1|0:1:-5,-0.03,-1.13	0|0:0:-0.01,-1.55,-5
22	50602340	rs111287080	G	T	100	PASS	AVGPOST=0.9957;THETA=0.0002;LDAF=0.0426;AN=2184;VT=SNP;AA=.;RSQ=0.9554;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=91;AF=0.04;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.13;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.11,-0.65,-4.4	1|0:0.8:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-2	0|0:0:-0.48,-0.48,-0.48
22	50602682	rs9628297	C	G	100	PASS	ERATE=0.0004;RSQ=0.9931;AVGPOST=0.9994;AN=2184;AC=84;VT=SNP;AA=.;SNPSOURCE=LOWCOV;LDAF=0.0388;THETA=0.0003;AF=0.04;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.12;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.79,-5	0|0:0:-0,-2.24,-5	0|0:0:-0,-2.25,-5	0|0:0:-0,-2.01,-5	0|0:0:-0,-2.89,-5
22	50603640	rs150021104	C	T	100	PASS	ERATE=0.0004;AN=2184;AC=6;THETA=0.0005;VT=SNP;AA=.;LDAF=0.003;SNPSOURCE=LOWCOV;AVGPOST=0.9984;RSQ=0.8011;AF=0.0027;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.02,-1.4,-5	0|0:0:-0,-1.99,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0,-2.95,-5
22	50604333	rs151155342	C	T	100	PASS	AC=12;LDAF=0.0067;AN=2184;VT=SNP;AA=.;RSQ=0.6658;SNPSOURCE=LOWCOV;ERATE=0.0007;THETA=0.0003;AVGPOST=0.9937;AF=0.01;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.12,-0.62,-4.22	0|0:0:-0.4,-0.45,-0.61	0|0:0:-0.08,-0.79,-4	0|0:0:-0.21,-0.43,-1.69	0|0:0:-0.48,-0.48,-0.48
22	50604696	rs112915006	A	G	100	PASS	ERATE=0.0042;AN=2184;AC=207;AVGPOST=0.9717;VT=SNP;AA=.;RSQ=0.8792;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.1004;AF=0.09;ASN_AF=0.14;AMR_AF=0.14;AFR_AF=0.09;EUR_AF=0.04	GT:DS:GL	0|0:0:-0,-2.03,-5	1|0:1:-0.48,-0.48,-0.48	0|0:0:-0.13,-0.59,-3.66	0|0:0:-0.2,-0.45,-1.94	0|0:0:-0.01,-1.64,-5
22	50604954	rs74206645	G	A	100	PASS	ERATE=0.0014;AN=2184;AC=77;VT=SNP;AA=.;LDAF=0.0444;AVGPOST=0.9691;RSQ=0.7361;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.04;ASN_AF=0.11;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0.1:-0.48,-0.48,-0.48	0|0:0:-0.17,-0.49,-2.39	0|0:0:-0.48,-0.48,-0.48
22	50605969	rs150072192	G	T	100	PASS	ERATE=0.0004;AN=2184;RSQ=0.5465;VT=SNP;AA=.;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0.01,-1.54,-5	0|0:0:-0.01,-1.55,-5	0|0:0:-0.19,-0.46,-2.42	0|0:0:-0,-2.35,-5
22	50606530	rs181914805	A	G	100	PASS	ERATE=0.0004;LDAF=0.0013;AN=2184;VT=SNP;AA=.;RSQ=0.522;THETA=0.0012;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9984;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-3.21,-5	0|0:0:-0,-2.57,-5	0|0:0:-0,-3.1,-5	0|0:0:-0.18,-0.48,-2.21	0|0:0:-0.04,-1.09,-5
22	50606641	rs57148818	AT	A	49	PASS	ERATE=0.0005;THETA=0.0004;AN=2184;VT=INDEL;RSQ=0.8461;AC=33;LDAF=0.0174;AVGPOST=0.9926;AF=0.02;AMR_AF=0.02;AFR_AF=0.05;EUR_AF=0.004	GT:DS:GL	0|0:0:0,-2.7,-43.2	0|0:0:0,-0.3,-4.8	0|0:0:0,0,0	0|0:0:0,-2.1,-32.1	0|0:0:0,0,0
22	50607593	rs60452707	G	T	100	PASS	LDAF=0.0211;AN=2184;AC=46;AVGPOST=0.9981;VT=SNP;AA=.;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.9676;ERATE=0.0003;AF=0.02;AMR_AF=0.02;AFR_AF=0.08	GT:DS:GL	0|0:0:-0,-2.33,-5	0|0:0:-0,-2.33,-5	0|0:0:-0.07,-0.81,-4.7	0|0:0:-0,-2.32,-5	0|0:0:-0.04,-1.08,-5
22	50607623	rs73893131	A	G	100	PASS	AN=2184;VT=SNP;AA=.;THETA=0.0033;RSQ=0.9923;AVGPOST=0.9998;SNPSOURCE=LOWCOV;LDAF=0.0096;AC=21;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04	GT:DS:GL	0|0:0:-0,-2.59,-5	0|0:0:-0.01,-1.55,-5	0|0:0:-0,-2.94,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0.07,-0.86,-5
22	50607806	rs185157037	A	G	100	PASS	AN=2184;RSQ=0.6684;VT=SNP;AA=.;LDAF=0.0026;AVGPOST=0.998;SNPSOURCE=LOWCOV;AC=4;THETA=0.0013;ERATE=0.0006;AF=0.0018;ASN_AF=0.0035;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0.4:-0,-2.07,-5	0|0:0:-0.01,-1.87,-5	0|0:0:-0.01,-1.6,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.01,-1.59,-5
22	50611605	.	GT	G	56	PASS	ERATE=0.0014;AN=2184;VT=INDEL;AC=22;THETA=0.0006;AVGPOST=0.9928;RSQ=0.7327;LDAF=0.0114;AF=0.01;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.03;EUR_AF=0.004	GT:DS:GL	0|0:0:0,-1.5,-22.5	0|0:0:0,-0.3,-4.5	0|0:0:0,-0.6,-9	0|0:0:0,-0.6,-9	0|0:0:0,-0.3,-4.2
22	50613314	rs75549088	G	A	100	PASS	AA=G;AN=2184;AC=46;VT=SNP;THETA=0.0006;RSQ=0.8604;ERATE=0.0008;LDAF=0.0242;SNPSOURCE=LOWCOV;AVGPOST=0.991;AF=0.02;AMR_AF=0.04;EUR_AF=0.04	GT:DS:GL	0|0:0:-0.18,-0.47,-2.42	0|0:0.05:-0.2,-0.44,-2.03	0|0:0:-0.48,-0.48,-0.48	0|1:1:-2.91,-0.46,-0.19	1|1:1.7:-0.48,-0.48,-0.48
22	50613679	rs182719106	G	A	100	PASS	ERATE=0.0005;LDAF=0.0024;AVGPOST=0.9977;AA=G;AN=2184;RSQ=0.5781;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.19,-0.47,-2.34	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.21,-0.47,-1.35	0|0:0:-0.11,-0.67,-4.7	0|0:0:-0.18,-0.47,-3.07
22	50613708	rs76158148	C	T	100	PASS	ERATE=0.0004;AA=C;LDAF=0.0103;AN=2184;RSQ=0.934;VT=SNP;AC=22;THETA=0.0028;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.22,-0.46,-1.32	0|0:0:-0.19,-0.45,-2.16	0|0:0:-0.01,-1.67,-5	0|0:0:-0.18,-0.47,-3.08
22	50613868	rs193124051	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.4744;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0,-1.98,-5	0|0:0:-0,-2.19,-5	0|0:0:-0.07,-0.82,-5	0|0:0:-0.04,-1.09,-5
22	50614476	rs5771204	T	C	100	PASS	AA=T;AN=2184;AVGPOST=0.9776;AC=815;VT=SNP;ERATE=0.001;LDAF=0.3716;SNPSOURCE=LOWCOV;RSQ=0.9634;THETA=0.0003;AF=0.37;ASN_AF=0.32;AMR_AF=0.28;AFR_AF=0.46;EUR_AF=0.39	GT:DS:GL	1|1:1.8:-5,-1.71,-0.01	0|0:0.15:-0.21,-0.46,-1.36	0|1:1:-2.15,-0.12,-0.62	1|0:1:-3.44,-0.51,-0.16	0|0:0:-0.12,-0.63,-4.7
22	50614941	rs34539068	G	GC	495	PASS	ERATE=0.0013;AN=2184;AVGPOST=0.9757;VT=INDEL;LDAF=0.2143;AC=457;THETA=0.0003;RSQ=0.9459;AF=0.21;ASN_AF=0.25;AMR_AF=0.24;AFR_AF=0.05;EUR_AF=0.27	GT:DS:GL	0|0:0:0,-1.5,-15.1	0|0:0:0,0,0	1|0:1:-3.6,0,-3	0|0:0:0,-0.9,-9.6	0|0:0:0,-0.3,-3.6
22	50616005	rs35195493	C	G	100	PASS	AC=12;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.996;VT=SNP;THETA=0.0007;ERATE=0.0003;LDAF=0.0055;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50616386	.	C	T	100	PASS	ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=14;LDAF=0.0074;SNPSOURCE=EXOME;AVGPOST=0.9973;RSQ=0.8515;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.06,-0.88,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.36,-0.41,-0.77	0|0:0:-0.21,-0.43,-2.43
22	50617052	rs184405821	C	T	100	PASS	AA=C;THETA=0.0002;RSQ=0.6197;AN=2184;VT=SNP;LDAF=0.0034;AVGPOST=0.9971;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.0023;AMR_AF=0.01;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-2.35,-5	0|0:0:-0.12,-0.62,-3.21	0|0:0:-0.03,-1.17,-5	0|0:0:-0.17,-0.5,-2.84	0|0:0:-0.05,-0.93,-5
22	50617078	rs140328537	C	G	100	PASS	ERATE=0.0004;AA=C;AN=2184;LDAF=0.0015;VT=SNP;THETA=0.0018;RSQ=0.6277;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-2.13,-5	0|0:0:-0.04,-1.06,-5	0|0:0:-0.02,-1.43,-5	0|0:0:-0.11,-0.66,-4.7	0|0:0:-0.02,-1.36,-5
22	50617653	rs114088468	C	T	100	PASS	AVGPOST=1;LDAF=0.0009;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.4,-5	0|0:0:-0,-2.97,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50617823	rs114455597	G	A	100	PASS	LDAF=0.0053;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0109;AC=11;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.9547;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.6,-5	0|0:0:-0.21,-0.46,-1.35	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.05,-0.96,-5	0|0:0:-0.01,-1.76,-5
22	50617829	rs73893132	C	T	100	PASS	RSQ=0.9859;LDAF=0.0263;AA=C;AN=2184;AC=57;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9992;AF=0.03;AMR_AF=0.02;AFR_AF=0.1	GT:DS:GL	0|0:0:-0,-2.67,-5	0|0:0:-0.2,-0.44,-2.06	0|0:0:-0.21,-0.43,-1.92	0|0:0:-0.05,-0.99,-5	0|0:0:-0.01,-1.77,-5
22	50618078	rs181690300	C	T	100	PASS	LDAF=0.0027;AA=C;RSQ=0.2839;AN=2184;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9955;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.08,-0.77,-5	0|0:0.1:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.02,-1.39,-5	0|0:0:-0.03,-1.11,-5
22	50618735	rs180778669	G	A	100	PASS	ERATE=0.0004;AA=g;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.8098;AVGPOST=0.9998;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.04,-1.05,-5	0|0:0:-0.01,-1.71,-5	0|0:0:-0.02,-1.39,-5	0|0:0:-0.04,-1.09,-5
22	50621278	rs118183276	G	C	100	PASS	ERATE=0.0004;AVGPOST=0.9986;THETA=0.0002;AA=G;AN=2184;RSQ=0.9732;VT=SNP;AC=51;LDAF=0.0238;SNPSOURCE=LOWCOV;AF=0.02;ASN_AF=0.07;AMR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.66,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.01,-1.5,-5	0|0:0:-0.02,-1.46,-5	0|0:0:-0.17,-0.5,-3.52
22	50621366	rs13056445	C	T	100	PASS	LDAF=0.522;AA=C;AN=2184;RSQ=0.9713;VT=SNP;AVGPOST=0.9823;ERATE=0.0018;SNPSOURCE=LOWCOV;AC=1142;THETA=0.0003;AF=0.52;ASN_AF=0.48;AMR_AF=0.55;AFR_AF=0.51;EUR_AF=0.55	GT:DS:GL	0|1:1:-0.21,-0.43,-1.94	1|1:1.95:-3,-0.48,-0.17	1|0:1:-4.7,-0.01,-1.91	0|0:0:-0.14,-0.57,-3.55	0|0:0:-0.16,-0.52,-3.8
22	50622173	rs144202460	C	T	100	PASS	AA=C;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0019;AVGPOST=0.9969;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.4148;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.03,-1.17,-5	0|0:0:-0.05,-1,-4.4	0|0:0:-0.21,-0.47,-1.35	0|0:0:-0,-1.95,-5	0|0:0:-0.11,-0.65,-4.7
22	50622562	rs75711073	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9994;AA=G;AN=2184;RSQ=0.9877;THETA=0.0005;VT=SNP;AC=51;SNPSOURCE=LOWCOV;LDAF=0.0236;AF=0.02;ASN_AF=0.07;AMR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.08,-5	0|0:0:-0.07,-0.82,-4.4	0|0:0:-0.07,-0.83,-4.22	0|0:0:-0.03,-1.16,-5	0|0:0:-0.08,-0.75,-5
22	50623151	rs115725421	G	A	100	PASS	ERATE=0.0004;AA=g;AN=2184;AC=16;RSQ=0.9147;VT=SNP;LDAF=0.0072;SNPSOURCE=LOWCOV;AVGPOST=0.9984;THETA=0.0003;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.12,-0.62,-2.31	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.86,-5
22	50626557	rs186720853	A	C	100	PASS	ERATE=0.0004;THETA=0.0004;RSQ=0.6159;AN=2184;AVGPOST=0.9979;VT=SNP;LDAF=0.0023;SNPSOURCE=LOWCOV;AA=a;AC=3;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.11,-0.66,-4.4	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.22,-0.42,-1.79	0|0:0:-0.01,-1.66,-5	0|0:0:-0.48,-0.48,-0.48
22	50627027	rs189690122	C	G	100	PASS	AN=2184;AVGPOST=0.9996;VT=SNP;AA=c;SNPSOURCE=LOWCOV;RSQ=0.9652;AC=11;ERATE=0.0003;LDAF=0.005;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.04,-5	0|0:0:-0,-1.94,-5	0|0:0:-0.02,-1.26,-5	0|0:0:-0.08,-0.77,-5	0|0:0:-0.12,-0.62,-3.85
22	50627307	rs143385518	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;RSQ=0.8919;AC=6;VT=SNP;AVGPOST=0.9993;THETA=0.0006;LDAF=0.0029;SNPSOURCE=LOWCOV;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0,-2.51,-5	0|0:0:-0.01,-1.9,-5	0|0:0:-0.01,-1.48,-5	0|0:0:-0.11,-0.64,-4
22	50627547	rs186194529	C	T	100	PASS	AA=C;LDAF=0.0016;AN=2184;RSQ=0.6198;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;ERATE=0.0007;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.01,-1.77,-5	0|0:0:-0.06,-0.88,-5	0|0:0:-0.05,-0.96,-5	0|0:0:-0.02,-1.38,-5
22	50627703	rs115495229	C	T	100	PASS	AC=7;AVGPOST=1;AA=C;AN=2184;LDAF=0.0032;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9947;THETA=0.0003;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.12,-0.61,-3.09	0|0:0:-0.06,-0.88,-5	0|0:0:-0.11,-0.66,-5
22	50628451	rs4838812	A	G	100	PASS	THETA=0.0004;AA=G;AN=2184;RSQ=0.989;VT=SNP;ERATE=0.0008;SNPSOURCE=LOWCOV;LDAF=0.7925;AVGPOST=0.9951;AC=1731;AF=0.79;ASN_AF=0.73;AMR_AF=0.69;AFR_AF=0.98;EUR_AF=0.76	GT:DS:GL	1|1:2:-5,-1.71,-0.01	1|0:1:-5,-0.89,-0.06	1|1:2:-5,-0.17,-0.48	1|0:0.95:-0.11,-0.66,-4.7	1|0:1:-5,-1.56,-0.01
22	50628927	rs192534537	C	T	100	PASS	AC=7;ERATE=0.0005;AA=C;LDAF=0.0042;AN=2184;AVGPOST=0.9972;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7296;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.12,-0.63,-4.7
22	50629291	rs56009766	G	T	100	PASS	AA=G;AN=2184;RSQ=0.9;VT=SNP;AVGPOST=0.9913;SNPSOURCE=LOWCOV;LDAF=0.0306;AC=63;ERATE=0.0007;THETA=0.0003;AF=0.03;AMR_AF=0.02;AFR_AF=0.11;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.21,-0.46,-1.35	0|0:0:-0.2,-0.45,-2.12	0|0:0:-0.03,-1.15,-5	0|0:0:-0.19,-0.45,-2.13
22	50629292	rs732405	T	G	100	PASS	AA=G;AN=2184;LDAF=0.7529;RSQ=0.9124;AC=1669;VT=SNP;ERATE=0.0055;AVGPOST=0.9558;SNPSOURCE=LOWCOV;THETA=0.002;AF=0.76;ASN_AF=0.73;AMR_AF=0.69;AFR_AF=0.95;EUR_AF=0.71	GT:DS:GL	1|1:1.95:-0.48,-0.48,-0.48	1|0:0.75:-0.44,-0.46,-0.54	1|1:1.95:-2.95,-0.48,-0.18	0|0:0.4:-0.03,-1.12,-5	1|0:1:-0.13,-0.6,-3.66
22	50629872	rs73187247	C	T	100	PASS	ERATE=0.0005;LDAF=0.081;AA=C;AN=2184;VT=SNP;AVGPOST=0.9954;SNPSOURCE=LOWCOV;RSQ=0.9784;AC=174;THETA=0.0003;AF=0.08;ASN_AF=0.02;AMR_AF=0.08;AFR_AF=0.07;EUR_AF=0.13	GT:DS:GL	0|1:1:-5,-0.26,-0.34	1|0:1:-5,0,-5	0|0:0:-0.01,-1.81,-5	0|0:0:-0.02,-1.42,-5	0|0:0:-0.18,-0.47,-3.09
22	50630163	rs182158926	C	T	100	PASS	ERATE=0.0004;RSQ=0.7227;AA=C;LDAF=0.0035;THETA=0.0004;AN=2184;AVGPOST=0.9975;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.0028;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.53,-5	0|0:0:-0,-2.04,-5	0|0:0:-0.02,-1.27,-5	0|0:0:-0,-1.98,-5	0|0:0:-0.01,-1.56,-5
22	50631146	rs2341366	A	G	100	PASS	AN=2184;VT=SNP;LDAF=0.2689;AA=A;AVGPOST=0.9918;RSQ=0.9835;SNPSOURCE=LOWCOV;AC=586;ERATE=0.0012;THETA=0.0003;AF=0.27;ASN_AF=0.26;AMR_AF=0.26;AFR_AF=0.38;EUR_AF=0.21	GT:DS:GL	0|0:0:-0.01,-1.75,-5	0|0:0:-0.19,-0.45,-2.22	1|0:1:-4.7,-0.23,-0.38	0|0:0:-0,-1.99,-5	0|0:0:-0.48,-0.48,-0.48
22	50631907	rs148680758	G	A	100	PASS	AC=18;AN=2184;VT=SNP;RSQ=0.9749;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AA=N;THETA=0.0003;LDAF=0.0082;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-2.92,-5	0|0:0:-0,-2.39,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5
22	50632839	.	G	A	100	PASS	AVGPOST=1;LDAF=0.0009;THETA=0.0002;RSQ=0.9768;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=2;ERATE=0.0007;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0,-3.15,-5	0|0:0:-0,-4.4,-5	0|0:0:-0.01,-1.94,-5	0|0:0:-0,-3.32,-5	0|0:0:-0,-4.7,-5
22	50632963	rs6537637	G	T	100	PASS	LDAF=0.0494;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=108;RSQ=0.9754;AVGPOST=0.9968;ERATE=0.0003;THETA=0.0003;AF=0.05;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.15;EUR_AF=0.03	GT:DS:GL	0|0:0:-0,-2.79,-5	0|0:0:-0,-3.74,-5	0|0:0:-0,-4.4,-5	0|0:0:-0.11,-0.67,-4.7	0|0:0:-0.06,-0.89,-5
22	50633009	rs139862873	C	T	100	PASS	AA=C;AN=2184;THETA=0.0005;RSQ=0.7895;VT=SNP;LDAF=0.0023;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0007;AF=0.0018;ASN_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-2.05,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0.06,-0.92,-5	0|0:0:-0.18,-0.46,-2.99
22	50633898	rs192867368	T	G	100	PASS	AC=7;RSQ=0.5731;AN=2184;LDAF=0.0043;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9951;AA=t;THETA=0.0003;AF=0.0032;ASN_AF=0.01;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-2.56,-5	0|0:0:-0.03,-1.23,-5	0|0:0:-0.04,-1.03,-5	0|0:0:-0.21,-0.44,-1.74	0|0:0:-0.48,-0.48,-0.48
22	50634899	rs141511494	C	A	100	PASS	ERATE=0.0004;AA=C;AC=18;THETA=0.0002;AVGPOST=0.9966;AN=2184;VT=SNP;LDAF=0.0094;RSQ=0.8854;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-2.13	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.66,-4.7
22	50634943	rs181619951	A	G	100	PASS	ERATE=0.0004;RSQ=0.7999;AA=G;AN=2184;LDAF=0.0018;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0.23,-0.45,-1.25	0|0:0:-0.11,-0.64,-4.1	0|0:0:-0.18,-0.47,-2.16	0|0:0:-0.1,-0.67,-4.4
22	50635168	rs190094641	C	T	100	PASS	ERATE=0.0005;AA=C;THETA=0.0002;AN=2184;LDAF=0.0037;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9961;RSQ=0.5902;AF=0.0023;AMR_AF=0.01;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.07,-0.81,-4.1	0|0:0:-0.03,-1.17,-5	0|0:0:-0.04,-1.1,-5	0|0:0:-0.11,-0.65,-4.7
22	50635627	rs5771095	C	T	100	PASS	ERATE=0.0004;AA=C;AVGPOST=0.9983;LDAF=0.3742;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.997;AC=818;AF=0.37;ASN_AF=0.36;AMR_AF=0.34;AFR_AF=0.43;EUR_AF=0.36	GT:DS:GL	1|0:1:-5,0,-5	0|0:0:-0,-2.47,-5	0|1:1:-0.12,-0.61,-3.02	1|0:1:-5,0,-5	1|0:1:-5,0,-5
22	50635714	.	G	C	100	PASS	AVGPOST=1;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50635729	rs141382688	C	T	100	PASS	THETA=0.0009;AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.9844;VT=SNP;LDAF=0.0014;ERATE=0.0003;AC=3;AF=0.0014;EUR_AF=0.004	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.11,-5	0|0:0:-0,-4.22,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50635795	rs112280002	A	G	100	PASS	RSQ=0.9497;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;AA=A;LDAF=0.0028;AC=5;ERATE=0.0003;AF=0.0023;AMR_AF=0.01;EUR_AF=0.004	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50635949	rs139568052	C	T	100	PASS	AVGPOST=1;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50636097	rs115013776	G	A	100	PASS	RSQ=0.9838;AA=G;AN=2184;VT=SNP;AVGPOST=0.9993;LDAF=0.018;THETA=0.0012;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=39;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.02;EUR_AF=0.03	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.04,-1.04,-4.7	0|0:0:-0.04,-1.04,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5
22	50636526	.	C	T	100	PASS	AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0024;RSQ=0.7497;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50637972	rs145334530	C	T	100	PASS	ERATE=0.0005;AA=C;AVGPOST=0.9983;LDAF=0.0047;AN=2184;RSQ=0.8603;VT=SNP;AC=9;SNPSOURCE=LOWCOV;THETA=0.002;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.02,-1.46,-5	0|0:0:-1.1,-0.04,-5	0|0:0:-0.03,-1.15,-5	0|0:0:-0.1,-0.67,-4.4	0|0:0:-0.01,-1.59,-5
22	50638502	rs5771096	T	C	100	PASS	ERATE=0.0004;AA=C;AC=2117;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9366;SNPSOURCE=LOWCOV;AVGPOST=0.9949;LDAF=0.9677;AF=0.97;ASN_AF=1;AMR_AF=0.95;AFR_AF=1;EUR_AF=0.94	GT:DS:GL	1|1:2:-5,-0.68,-0.1	1|1:2:-2.99,-0.48,-0.17	1|1:2:-3.02,-0.48,-0.17	1|0:1:-5,-0,-3	1|0:1:-0.18,-0.46,-3.02
22	50638520	rs77281844	G	A	100	PASS	AN=2184;AVGPOST=0.989;VT=SNP;AA=A;LDAF=0.0417;SNPSOURCE=LOWCOV;ERATE=0.0015;AC=86;THETA=0.0007;RSQ=0.8925;AF=0.04;ASN_AF=0.07;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.06,-0.9,-5	0|0:0:-0.2,-0.44,-2.03	0|0:0:-0.13,-0.6,-3.74	0|0:0:-0.04,-1.05,-5	0|0:0:-0.2,-0.44,-2.71
22	50639320	rs145912868	C	A	100	PASS	AA=C;AN=2184;ERATE=0.0009;VT=SNP;RSQ=0.8013;SNPSOURCE=LOWCOV;LDAF=0.0213;AC=39;THETA=0.0003;AVGPOST=0.9891;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.06;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.88,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.2,-0.44,-2.04	0|1:0.95:-0.36,-0.41,-0.78	0|1:0.95:-0.48,-0.48,-0.48
22	50639366	.	CA	C	63	PASS	AVGPOST=0.8007;RSQ=0.7035;AN=2184;ERATE=0.0105;VT=INDEL;LDAF=0.4471;AC=950;THETA=0.0003;AF=0.43;ASN_AF=0.41;AMR_AF=0.29;AFR_AF=0.72;EUR_AF=0.34	GT:DS:GL	1|1:1.5:0,-0.2,-0.4	0|0:0.45:0,0,0	0|1:1:0,0,0	0|0:0.05:0,0,0	1|0:0.95:0,0,0
22	50640353	rs73435239	C	T	100	PASS	ERATE=0.0004;AA=C;THETA=0.0002;AN=2184;AVGPOST=0.9975;VT=SNP;AC=95;LDAF=0.0447;RSQ=0.9797;SNPSOURCE=LOWCOV;AF=0.04;AMR_AF=0.01;AFR_AF=0.19	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0.06,-0.92,-4	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.21,-0.42,-1.91	0|0:0:-0.02,-1.3,-5
22	50640948	rs79163610	C	G	100	PASS	ERATE=0.0004;AA=C;LDAF=0.0016;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.4734;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.01,-1.68,-5	0|0:0:-0.12,-0.62,-3.92	0|0:0:-0.19,-0.45,-2.16	0|0:0:-0.02,-1.37,-5	0|0:0:-0.06,-0.88,-5
22	50641093	rs185636253	T	A	100	PASS	AA=T;AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0006;RSQ=0.4508;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;LDAF=0.0017;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.03,-1.23,-5	0|0:0:-0,-2.56,-5	0|0:0:-0.01,-1.82,-5	0|0:0:-0.02,-1.41,-5	0|0:0:-0.19,-0.46,-2.16
22	50641813	rs148255818	A	G	100	PASS	THETA=0.0004;AN=2184;VT=SNP;AA=A;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0,-2.58,-5	0|0:0:-0,-2.85,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0.11,-0.64,-4.1
22	50642357	rs191823516	T	C	100	PASS	AA=T;AN=2184;THETA=0.0001;VT=SNP;LDAF=0.0007;RSQ=0.8078;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0,-4.22,-5	0|0:0:-0,-2.61,-5	0|0:0:-0.09,-0.74,-4.7	0|0:0:-0.01,-1.61,-5
22	50642527	rs75209016	G	A	100	PASS	AVGPOST=1;AA=g;AN=2184;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;LDAF=0.005;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0,-3.49,-5	0|0:0:-0,-3.7,-5	0|0:0:-0,-1.96,-5	0|0:0:-0.02,-1.29,-5
22	50643688	rs150942078	G	T	100	PASS	RSQ=0.878;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.7,-5	0|0:0:-0,-2.53,-5	0|0:0:-0.01,-1.48,-5	0|0:0:-0,-2.45,-5	0|0:0:-0,-2.69,-5
22	50643880	rs114940561	G	A	100	PASS	AA=g;RSQ=0.921;AN=2184;AC=13;THETA=0.0005;VT=SNP;LDAF=0.0064;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.77,-5	0|0:0:-0.01,-1.5,-5	0|0:0:-0.04,-1.01,-5	0|0:0:-0.11,-0.66,-4.22	0|0:0:-0.02,-1.34,-5
22	50644658	rs2294398	G	A	100	PASS	AC=136;THETA=0.0002;RSQ=0.9855;AA=G;AN=2184;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.062;AF=0.06;ASN_AF=0.23;AMR_AF=0.01;EUR_AF=0.004	GT:DS:GL	0|0:0:-0,-3.66,-5	0|0:0:-0,-3.02,-5	0|0:0:-0,-3.85,-5	0|0:0:-0,-2.74,-5	0|0:0:0,-5,-5
22	50645241	rs150856655	C	T	100	PASS	LDAF=0.0067;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9924;VT=SNP;AC=10;ERATE=0.0016;RSQ=0.5488;SNPSOURCE=LOWCOV;AF=0.0046;ASN_AF=0.0017;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.02,-1.37,-5	0|0:0.05:-0.12,-0.61,-3.11	0|0:0:-0.08,-0.79,-3.21	0|0:0:-0.18,-0.48,-2.2	0|0:0:-0.27,-0.38,-1.34
22	50645701	rs181399872	C	T	100	PASS	ERATE=0.0005;RSQ=0.4805;AA=C;THETA=0.0002;LDAF=0.0047;AN=2184;VT=SNP;AVGPOST=0.993;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.78,-0.08,-5	0|0:0:-0.12,-0.62,-3.92	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.11,-0.66,-3.85	0|0:0:-0.48,-0.48,-0.48
22	50645984	rs117996558	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4595;THETA=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.18,-0.46,-2.75	0|0:0:-0.12,-0.63,-3.28	0|0:0:-0.07,-0.84,-5	0|0:0:-0.18,-0.48,-2.19	0|0:0:-0.48,-0.48,-0.48
22	50646285	rs140126200	G	A	100	PASS	AC=7;ERATE=0.0004;LDAF=0.0036;RSQ=0.914;THETA=0.0002;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-1.98,-5	0|0:0:-0.01,-1.71,-5	0|0:0:-0.13,-0.61,-2.22	0|0:0:-0.06,-0.88,-5	0|0:0:-0.48,-0.48,-0.48
22	50646835	.	GACA	G	106	PASS	ERATE=0.0004;THETA=0.0004;AN=2184;LDAF=0.0043;VT=INDEL;RSQ=0.9496;AC=9;AVGPOST=0.9995;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:0,-1.5,-33.5	0|0:0:0,0,0	0|0:0:0,-0.3,-6.7	0|0:0:0,0,0	0|0:0:0,0,0
22	50647178	rs182724775	G	A	100	PASS	THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;AC=1;RSQ=0.7844;ERATE=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3,-5	0|0:0:-0.01,-1.71,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50647893	rs144654277	C	G	100	PASS	ERATE=0.0004;AA=C;AN=2184;VT=SNP;LDAF=0.0026;SNPSOURCE=LOWCOV;AC=4;RSQ=0.7047;AVGPOST=0.9984;THETA=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.12,-0.63,-3.27	0|0:0:-0.13,-0.61,-2.21	0|0:0:-0.03,-1.19,-5	0|0:0:-0.04,-1.08,-5
22	50648002	rs116517135	T	A	100	PASS	AC=301;ERATE=0.0004;AA=T;AN=2184;AVGPOST=0.9924;LDAF=0.1383;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9784;THETA=0.0003;AF=0.14;ASN_AF=0.33;AMR_AF=0.06;AFR_AF=0.09;EUR_AF=0.07	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.07,-0.81,-3.47	0|1:1:-4.7,-0.24,-0.38	0|0:0:-0.29,-0.39,-1.12	0|0:0:-0.06,-0.9,-5
22	50649011	.	C	T	100	PASS	ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=EXOME;AC=1;RSQ=0.6021;LDAF=0.0008;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.01,-1.49,-5	0|0:0:-0.12,-0.62,-2.28	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50649211	rs139388622	G	A	100	PASS	ERATE=0.0004;RSQ=0.6889;AVGPOST=0.9994;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=1;THETA=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.56,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50649297	rs36098069	C	T	100	PASS	AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.996;THETA=0.0008;VT=SNP;AVGPOST=0.9998;AC=63;ERATE=0.0003;LDAF=0.0289;AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.07	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	1|0:1:-5,0,-5	0|0:0:0,-5,-5
22	50649491	rs145484074	A	G	100	PASS	ERATE=0.0004;RSQ=0.9393;AN=2184;VT=SNP;AA=A;AC=9;SNPSOURCE=LOWCOV;LDAF=0.0045;THETA=0.0003;AVGPOST=0.9992;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-2.56,-5	0|0:0:-0,-3.02,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50649535	rs139443972	C	T	100	PASS	ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9156;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0023;ASN_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.08,-5	0|0:0:-0,-2.21,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5
22	50649871	rs56850037	A	T	100	PASS	AC=47;AVGPOST=0.9983;LDAF=0.0218;RSQ=0.9707;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.09	GT:DS:GL	0|0:0:-0.18,-0.48,-2.49	0|0:0:-0,-4.4,-5	0|0:0:-0,-3.3,-5	0|0:0:-0.01,-1.74,-5	0|0:0:-0,-2.12,-5
22	50649908	rs143112707	G	C	100	PASS	AC=7;LDAF=0.0033;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9677;THETA=0.0003;AF=0.0032;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.67,-4.4	0|0:0:-0,-2.89,-5	0|0:0:-0,-2.65,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0.01,-1.82,-5
22	50650050	rs140419084	A	G	100	PASS	ERATE=0.0004;AN=2184;AC=16;VT=SNP;RSQ=0.8625;LDAF=0.0072;AA=A;AVGPOST=0.9973;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.01;AFR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.73,-5	0|0:0:-0.01,-1.81,-5	0|0:0:-0.01,-1.83,-5	0|0:0:-0.01,-1.71,-5	0|0:0:-0.19,-0.46,-2.17
22	50652771	rs4293651	G	A	100	PASS	RSQ=0.9497;AVGPOST=0.9963;AA=g;THETA=0.0004;AN=2184;AC=57;LDAF=0.0275;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.03;ASN_AF=0.04;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.04	GT:DS:GL	0|0:0:-0.06,-0.87,-5	0|0:0:-0.03,-1.19,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.09,-0.72,-4.4	0|0:0:-0.07,-0.83,-5
22	50654577	rs79019062	G	A	100	PASS	ERATE=0.0004;LDAF=0.043;AC=94;THETA=0.0004;AA=G;AN=2184;RSQ=0.9954;AVGPOST=0.9996;VT=SNP;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.13;AMR_AF=0.02;EUR_AF=0.02	GT:DS:GL	0|0:0:-0,-3.28,-5	0|0:0:-0,-3.49,-5	0|0:0:-0,-3.7,-5	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.04,-1.1,-5
22	50654888	rs2038049	G	C	100	PASS	LDAF=0.3941;THETA=0.0004;AA=G;AN=2184;RSQ=0.9818;VT=SNP;ERATE=0.0011;AVGPOST=0.9886;SNPSOURCE=LOWCOV;AC=861;AF=0.39;ASN_AF=0.38;AMR_AF=0.38;AFR_AF=0.44;EUR_AF=0.39	GT:DS:GL	1|0:1:-2.62,-0.12,-0.62	0|0:0:-0,-2.21,-5	0|1:1:-0.13,-0.61,-2.22	1|0:1:-3.8,-0,-3.7	1|0:1:-5,-0,-3.59
22	50654906	rs143358267	C	T	100	PASS	ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=24;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.0108;RSQ=0.8905;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.15,-0.54,-3.32	0|0:0:-0.07,-0.85,-4.4	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.01,-1.52,-5	0|0:0:-0.18,-0.46,-3
22	50655196	.	G	A	100	PASS	RSQ=0.0498;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0001;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;AF=0	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-2.99,-5	0|0:0:-0,-2.37,-5	0|0:0:-0,-2.74,-5	0|0:0:-0,-2.05,-5
22	50655528	.	G	A	100	PASS	ERATE=0.0004;THETA=0.0002;RSQ=0.8519;AA=G;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4,-5	0|0:0:-0,-2.89,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50655723	rs148419153	G	A	100	PASS	LDAF=0.0052;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.9702;AC=11;ERATE=0.0003;THETA=0.0003;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-1.98,-5	0|0:0:-0.02,-1.4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50655781	.	G	A	100	PASS	AC=7;LDAF=0.0033;THETA=0.0004;AA=G;AN=2184;RSQ=0.9799;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AVGPOST=0.9999;AF=0.0032;ASN_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50656587	rs145252088	C	G	100	PASS	AVGPOST=1;LDAF=0.0009;AA=C;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-2.7,-5	0|0:0:-0.03,-1.24,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5
22	50656647	.	G	A	100	PASS	AA=G;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9993;ERATE=0.0011;SNPSOURCE=EXOME;RSQ=0.7775;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.09,-0.73,-3.01	0|0:0:-0.05,-0.94,-3.92	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50657010	rs4838864	C	G	100	PASS	SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;RSQ=0.9767;VT=SNP;AC=2180;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.9981;AF=1;ASN_AF=1;AMR_AF=1;AFR_AF=1;EUR_AF=0.99	GT:DS:GL	1|1:2:-5,-5,0	1|1:2:-5,-3.36,-0	1|1:2:-5,-5,0	1|1:2:-5,-5,0	1|1:2:-5,-5,0
22	50657419	rs150285388	G	A	100	PASS	ERATE=0.0004;LDAF=0.0016;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.8782;AVGPOST=0.9995;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-4.22,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0.03,-1.23,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5
22	50657611	rs17013240	G	A	100	PASS	AVGPOST=1;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=57;VT=SNP;RSQ=1;LDAF=0.0261;ERATE=0.0003;AF=0.03;AMR_AF=0.01;AFR_AF=0.11	GT:DS:GL	0|0:0:-0,-3.42,-5	0|0:0:-0,-3.74,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50657617	.	G	A	100	PASS	AA=g;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.8642;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-3.52,-5	0|0:0:-0,-4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50658253	.	C	T	100	PASS	AVGPOST=1;LDAF=0.0004;AA=C;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50658319	rs114413694	C	T	100	PASS	AC=7;AVGPOST=1;AA=C;AN=2184;LDAF=0.0032;VT=SNP;THETA=0.003;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9947;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-3.19,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50658424	rs11703226	T	C	100	PASS	AVGPOST=0.9977;RSQ=0.9963;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;LDAF=0.425;VT=SNP;AC=929;ERATE=0.0086;AF=0.43;ASN_AF=0.38;AMR_AF=0.42;AFR_AF=0.46;EUR_AF=0.44	GT:DS:GL	1|0:1:-5,0,-5	0|0:0:0,-5,-5	0|1:1:-5,0,-5	1|0:1:-5,0,-5	1|0:1:-5,0,-5
22	50658695	rs150838239	C	G	100	PASS	AVGPOST=1;AA=C;AN=2184;VT=SNP;RSQ=1;LDAF=0.0014;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50659056	rs140699312	G	A	100	PASS	ERATE=0.0005;AA=g;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=6;AVGPOST=0.9996;VT=SNP;LDAF=0.0029;RSQ=0.9357;AF=0.0027;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.22,-5	0|0:0:-0,-3.14,-5	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.7,-5
22	50659347	rs73893142	G	A	100	PASS	THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;AC=97;AA=-;RSQ=0.997;ERATE=0.0003;LDAF=0.0445;AF=0.04;AMR_AF=0.02;AFR_AF=0.18	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50659598	rs149231425	C	T	100	PASS	AVGPOST=1;AA=C;THETA=0.0004;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=36;ERATE=0.0003;LDAF=0.0164;AF=0.02;AMR_AF=0.04;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50661579	rs183870870	G	C	100	PASS	LDAF=0.0009;RSQ=0.5852;THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-2.55,-5	0|0:0:-0,-2.03,-5	0|0:0:-0.03,-1.19,-5	0|0:0:-0.03,-1.13,-5
22	50661609	rs58803308	G	A	100	PASS	LDAF=0.0152;THETA=0.0004;AA=G;AN=2184;VT=SNP;AC=32;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;RSQ=0.9693;AF=0.01;AMR_AF=0.0028;AFR_AF=0.06	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-2.22,-5	0|0:0:-0,-1.99,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.04,-1.1,-5
22	50661656	rs187875753	G	A	100	PASS	AA=G;AN=2184;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.97,-0.05,-5	0|0:0:-0.02,-1.46,-5	0|0:0:-0,-2.05,-5	0|0:0:-0.02,-1.27,-5
22	50661879	rs182928306	C	G	100	PASS	LDAF=0.0021;AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.8796;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.02,-1.32,-5	0|0:0:-0.12,-0.61,-3.1	0|0:0:-0.11,-0.66,-4.22	0|0:0:-0.19,-0.46,-2.16
22	50661900	rs142870381	G	C	100	PASS	ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5044;THETA=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.73,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.07,-0.82,-5	0|0:0:-0.1,-0.67,-4.22	0|0:0:-0.48,-0.48,-0.48
22	50662731	.	C	T	100	PASS	AVGPOST=1;AA=C;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50662925	.	C	G	100	PASS	AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50664351	.	C	T	100	PASS	AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50664523	.	C	T	100	PASS	AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50665128	rs186133442	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;VT=SNP;RSQ=0.721;LDAF=0.002;SNPSOURCE=LOWCOV;THETA=0.0052;AVGPOST=0.9987;AC=3;AF=0.0014;ASN_AF=0.0035;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.67,-5	0|0:0:-0.04,-1.03,-5	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.06,-0.89,-5	0|0:0:-0.01,-1.51,-5
22	50665860	rs730936	T	C	100	PASS	THETA=0.0088;ERATE=0.0036;AA=T;AN=2184;VT=SNP;RSQ=0.9653;SNPSOURCE=LOWCOV;AC=487;AVGPOST=0.985;LDAF=0.2272;AF=0.22;ASN_AF=0.22;AMR_AF=0.24;AFR_AF=0.26;EUR_AF=0.2	GT:DS:GL	0|0:0:-0.01,-1.72,-5	0|0:0:-0,-2.26,-5	1|0:1:-5,-0,-4.7	0|0:0:-0.01,-1.54,-5	0|0:0:-0,-2.08,-5
22	50665862	rs148775609	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9995;THETA=0.0064;RSQ=0.6862;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.01,-1.91,-5	0|0:0:-0,-1.99,-5	0|0:0:-0,-1.98,-5	0|0:0:-0.02,-1.39,-5	0|0:0:-0,-2.91,-5
22	50666669	rs192550738	C	T	100	PASS	THETA=0.005;ERATE=0.0004;AVGPOST=0.9986;LDAF=0.0013;AA=C;AN=2184;RSQ=0.5936;VT=SNP;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.09,-0.73,-3	0|0:0:-0.07,-0.8,-4.1	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.01,-1.92,-5
22	50666804	rs12168266	G	A	100	PASS	ERATE=0.0005;LDAF=0.0035;AA=G;AN=2184;VT=SNP;AVGPOST=0.9976;AC=5;SNPSOURCE=LOWCOV;THETA=0.0098;RSQ=0.7059;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.03,-1.18,-5	0|0:0:-0.12,-0.62,-3.12	0|0:0:-0.18,-0.47,-2.45	0|0:0:-0.02,-1.42,-5
22	50666859	rs189980760	A	G	100	PASS	AN=2184;AC=8;VT=SNP;RSQ=0.5699;AA=A;LDAF=0.0056;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0007;AVGPOST=0.9932;AF=0.0037;ASN_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0.11,-0.66,-4.22	0|0:0:-0.09,-0.75,-5	0|0:0:-0.05,-0.99,-5
22	50667842	.	G	A	100	PASS	AVGPOST=1;AA=G;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50667868	.	G	C	100	PASS	AVGPOST=1;LDAF=0.0004;AA=G;AN=2184;RSQ=0.95;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50667981	.	C	T	100	PASS	AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0025;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.05,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.22,-5	0|0:0:-0,-3.04,-5	0|0:0:-0,-3.62,-5
22	50669686	rs34246563	CA	C	461	PASS	AVGPOST=0.9314;AN=2184;VT=INDEL;RSQ=0.8927;LDAF=0.3652;ERATE=0.0011;AC=798;THETA=0.0003;AF=0.37;ASN_AF=0.39;AMR_AF=0.35;AFR_AF=0.24;EUR_AF=0.43	GT:DS:GL	1|1:2:-16.8,-1.2,0	0|0:0.05:0,-0.3,-4.8	1|1:1.8:-4.2,-0.3,0	0|0:0:0,-2.1,-33.6	0|0:0:0,-0.3,-4
22	50670993	rs184125398	A	C	100	PASS	LDAF=0.0013;AN=2184;RSQ=0.7202;VT=SNP;SNPSOURCE=LOWCOV;AA=a;THETA=0.0007;ERATE=0.0003;AC=2;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0017;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.14,-0.57,-2.82	0|0:0:-0.03,-1.18,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.03,-1.14,-5
22	50672044	rs187010127	C	T	100	PASS	AVGPOST=1;AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.22,-5	0|0:0:-0,-2.56,-5	0|0:0:-0,-3.8,-5
22	50673051	rs115112240	G	T	100	PASS	AC=30;AA=g;AN=2184;VT=SNP;RSQ=0.9169;SNPSOURCE=LOWCOV;AVGPOST=0.9968;LDAF=0.0139;ERATE=0.0003;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.06	GT:DS:GL	0|0:0:-0.01,-1.62,-5	0|0:0:-0,-2,-5	0|0:0:-0.02,-1.44,-5	0|0:0:-0.02,-1.38,-5	0|0:0:-0.04,-1.07,-5
22	50674692	rs187144559	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9957;AA=G;AN=2184;VT=SNP;RSQ=0.4749;LDAF=0.003;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0.13,-0.58,-3.55	0|0:0:-0.19,-0.45,-2.15	0|0:0:-0.02,-1.43,-5	0|0:0:-0.48,-0.48,-0.48
22	50675671	rs139473100	G	C	100	PASS	ERATE=0.0004;AA=G;AN=2184;AC=6;THETA=0.0005;AVGPOST=0.9996;VT=SNP;LDAF=0.0029;SNPSOURCE=LOWCOV;RSQ=0.9323;AF=0.0027;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0,-2.54,-5	0|0:0:-0,-2.91,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0,-2.15,-5
22	50675962	rs5771259	G	A	100	PASS	AVGPOST=0.9946;AA=G;AN=2184;RSQ=0.9857;THETA=0.0005;LDAF=0.1848;VT=SNP;AC=400;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.18;ASN_AF=0.25;AMR_AF=0.25;AFR_AF=0.1;EUR_AF=0.16	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.21,-0.46,-1.36	1|0:1:-4.7,-0.01,-1.93	0|0:0:-0.01,-1.49,-5	0|0:0:-0.04,-1.04,-5
22	50676032	rs188980445	C	T	100	PASS	AA=C;AVGPOST=0.9994;AN=2184;AC=6;VT=SNP;LDAF=0.0028;RSQ=0.9047;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.0027;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.12,-0.62,-2.42	0|0:0.1:-1.78,-0.01,-3.12	0|0:0:-0.06,-0.9,-5	0|0:0:-0.04,-1.11,-5
22	50676340	rs76463206	G	T	100	PASS	ERATE=0.0004;AVGPOST=0.9977;THETA=0.0002;AA=T;AN=2184;VT=SNP;RSQ=0.9788;SNPSOURCE=LOWCOV;AC=109;LDAF=0.0493;AF=0.05;ASN_AF=0.13;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0.03,-1.23,-5	0|0:0:-0.05,-0.97,-5	0|0:0:-0.18,-0.47,-2.16	0|0:0:-0.01,-1.7,-5
22	50676518	rs185559761	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;VT=SNP;AC=9;AVGPOST=0.9973;LDAF=0.0044;SNPSOURCE=LOWCOV;RSQ=0.7473;THETA=0.0003;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.004	GT:DS:GL	0|0:0:-0,-2.56,-5	0|0:0:-0.09,-0.73,-4.4	0|0:0.05:-0.12,-0.63,-4.1	0|0:0:-0.04,-1.09,-5	0|0:0:-0.12,-0.63,-4.7
22	50677022	rs76617415	A	G	100	PASS	THETA=0.0002;AN=2184;VT=SNP;AC=113;AA=A;RSQ=0.9802;SNPSOURCE=LOWCOV;AVGPOST=0.9978;ERATE=0.0006;LDAF=0.0523;AF=0.05;ASN_AF=0.14;AMR_AF=0.03;AFR_AF=0.03;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0.1:-0.26,-0.44,-1.03	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50678023	rs187873864	G	A	100	PASS	LDAF=0.0013;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.6582;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0.01,-1.53,-5	0|0:0:-0.07,-0.84,-5	0|0:0:-0.11,-0.64,-4	0|0:0:-0.19,-0.46,-2.15
22	50678045	rs190442996	C	A	100	PASS	AA=C;THETA=0.0004;AN=2184;AC=13;ERATE=0.0025;VT=SNP;AVGPOST=0.9855;RSQ=0.5054;SNPSOURCE=LOWCOV;LDAF=0.0108;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0,-1.95,-5	0|0:0:-0.12,-0.63,-4	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.48,-0.48,-0.48
22	50678571	rs5771109	T	C	100	PASS	AA=T;AN=2184;RSQ=0.9993;AVGPOST=0.9996;LDAF=0.3794;VT=SNP;SNPSOURCE=LOWCOV;AC=830;ERATE=0.0003;THETA=0.0003;AF=0.38;ASN_AF=0.34;AMR_AF=0.26;AFR_AF=0.49;EUR_AF=0.4	GT:DS:GL	1|0:1:-5,0,-5	0|0:0:-0,-3.74,-5	0|1:1:-5,0,-5	1|0:1:-5,0,-5	1|0:1:-5,0,-5
22	50678821	.	C	T	100	PASS	AVGPOST=1;AA=C;AN=2184;THETA=0.0001;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50680133	rs11703790	T	C	100	PASS	RSQ=0.9628;AA=T;AN=2184;AC=128;VT=SNP;LDAF=0.0591;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9941;THETA=0.0003;AF=0.06;AMR_AF=0.09;AFR_AF=0.01;EUR_AF=0.12	GT:DS:GL	1|0:1:-5,-0.04,-1.04	0|0:0:-0,-3.02,-5	0|0:0:-0.09,-0.74,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.92,-5
22	50680244	rs190981240	T	C	100	PASS	AC=7;ERATE=0.0004;AA=T;AN=2184;RSQ=0.6394;LDAF=0.0043;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9958;AF=0.0032;ASN_AF=0.0017;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.21,-0.41,-5	0|0:0:-0.2,-0.44,-2.1	0|0:0:-0.13,-0.6,-3.03	0|1:0.55:-0.18,-0.48,-2.18	0|1:0.55:-0.03,-1.23,-5
22	50680490	rs5771266	G	A	100	PASS	RSQ=0.9655;AC=330;AA=G;AN=2184;THETA=0.0005;VT=SNP;ERATE=0.0011;AVGPOST=0.9886;SNPSOURCE=LOWCOV;LDAF=0.1533;AF=0.15;ASN_AF=0.24;AMR_AF=0.22;AFR_AF=0.02;EUR_AF=0.13	GT:DS:GL	0|0:0:-0.02,-1.47,-5	0|0:0:-0.19,-0.46,-2.21	1|0:1:-1.64,-0.03,-1.41	0|0:0.15:-0.18,-0.48,-2.2	0|0:0:-0.23,-0.41,-1.59
22	50680684	rs188110726	G	A	100	PASS	ERATE=0.0005;AVGPOST=0.9977;LDAF=0.0035;THETA=0.0004;AA=G;AN=2184;AC=6;VT=SNP;RSQ=0.7361;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.0035;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.18,-0.48,-2.47	0|0:0:-0.08,-0.79,-5	0|0:0:-0.08,-0.77,-5	0|0:0:-0.06,-0.9,-5	0|0:0:-0.22,-0.42,-1.74
22	50681010	rs17248343	A	C	100	PASS	ERATE=0.0004;AC=94;AN=2184;VT=SNP;AA=A;RSQ=0.9894;LDAF=0.0434;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.04;ASN_AF=0.13;AMR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0,-3.66,-5	0|0:0:-0,-4.4,-5	0|0:0:-0,-2.32,-5	0|0:0:-0,-2.9,-5
22	50681088	rs143302052	A	G	100	PASS	AN=2184;VT=SNP;AA=A;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0,-3.92,-5	0|0:0:-0,-3.92,-5	0|0:0:-0,-3.44,-5	0|0:0:-0,-3.14,-5
22	50681616	rs192962671	C	T	100	PASS	AA=C;THETA=0.0002;AN=2184;AC=46;LDAF=0.0364;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9518;ERATE=0.0072;RSQ=0.4569;AF=0.02;ASN_AF=0.02;AMR_AF=0.02;AFR_AF=0.03;EUR_AF=0.02	GT:DS:GL	0|0:0.3:-0.02,-1.46,-5	0|0:0:-0.22,-0.46,-1.29	0|0:0:-0.2,-0.45,-2.11	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.13,-0.6,-4.4
22	50682351	rs143957857	G	T	100	PASS	RSQ=0.8614;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50682879	rs61736756	T	C	100	PASS	THETA=0.0014;LDAF=0.0398;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;VT=SNP;AC=87;ERATE=0.0003;RSQ=0.9989;AVGPOST=0.9999;AF=0.04;AMR_AF=0.02;AFR_AF=0.16	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-2.64,-5	0|0:0:-0,-3.8,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50683973	.	C	G	100	PASS	AA=C;THETA=0.0002;AN=2184;VT=SNP;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0003;AC=3;AVGPOST=0.9999;RSQ=0.9693;AF=0.0014;AMR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-3.85,-5	0|0:0:-0,-3.7,-5	0|0:0:-0,-3.85,-5	0|0:0:-0,-3.03,-5	0|0:0:0,-5,-5
22	50684289	rs146510222	G	A	100	PASS	THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.001;VT=SNP;RSQ=0.9359;ERATE=0.0003;AC=2;AVGPOST=0.9999;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-3.11,-5	0|0:0:-0,-4,-5	0|0:0:-0,-4.1,-5	0|0:0:-0,-2.01,-5	0|0:0:-0,-3.4,-5
22	50685154	.	C	A	100	PASS	AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0052;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50685748	rs188919653	G	T	100	PASS	ERATE=0.0004;RSQ=0.6168;LDAF=0.0009;THETA=0.0022;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0.01,-1.51,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0.01,-1.5,-5	0|0:0:-0,-2.46,-5
22	50685980	rs115053950	A	G	100	PASS	ERATE=0.0004;RSQ=0.9958;AN=2184;LDAF=0.0106;VT=SNP;AC=23;THETA=0.0018;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9999;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.01,-1.86,-5	0|0:0:-0,-3.14,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5
22	50686031	rs193044347	C	T	100	PASS	AVGPOST=1;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-3.52,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50686210	.	G	T	100	PASS	RSQ=0.9049;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0012;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50686473	rs138377809	G	A	100	PASS	ERATE=0.0004;LDAF=0.0021;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0027;RSQ=0.8328;AC=4;AVGPOST=0.9992;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.01,-1.64,-5	0|0:0:-0.05,-1,-4.22	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50686501	rs36039258	A	T	100	PASS	RSQ=0.9678;SNPSOURCE=LOWCOV,EXOME;AN=2184;LDAF=0.0117;VT=SNP;THETA=0.0028;AA=A;AVGPOST=0.9991;ERATE=0.0003;AC=25;AF=0.01;AMR_AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.01,-1.49,-5	0|0:0:-0.05,-1,-4.22	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50686807	rs184151274	G	A	100	PASS	SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;THETA=0.0006;AA=A;AC=1;ERATE=0.0003;LDAF=0.0005;RSQ=0.7497;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-3.34,-5	0|0:0:0,-5,-5	0|0:0:-0,-3.92,-5
22	50687190	.	G	C	100	PASS	ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7461;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;THETA=0.0036;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.05,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.22,-5	0|0:0:-0,-2.09,-5	0|0:0:-0,-3.52,-5
22	50687970	rs3830750	CAT	C	460	PASS	ERATE=0.0005;RSQ=0.9772;AC=85;AN=2184;AVGPOST=0.9981;VT=INDEL;LDAF=0.0395;THETA=0.001;AF=0.04;ASN_AF=0.08;AMR_AF=0.03;EUR_AF=0.03	GT:DS:GL	0|0:0:0,-2.4,-48.6	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,-0.3,-6.1	0|0:0:0,0,0
22	50689267	.	G	A	100	PASS	AVGPOST=1;AA=G;AN=2184;RSQ=0;VT=SNP;LDAF=0;SNPSOURCE=EXOME;AC=0;ERATE=0.0003;THETA=0.0003;AF=0	GT:DS:GL	0|0:0:-0.01,-1.63,-5	0|0:0:-0.07,-0.83,-4.4	0|0:0:-0.07,-0.81,-4.1	0|0:0:-0,-3.25,-5	0|0:0:-0.01,-1.69,-5
22	50689654	rs76662439	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.998;RSQ=0.9275;LDAF=0.0122;SNPSOURCE=LOWCOV;AC=25;AF=0.01;ASN_AF=0.04;EUR_AF=0.004	GT:DS:GL	0|0:0.05:-0.06,-0.89,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-2.37	0|0:0:-0,-2.07,-5
22	50690355	rs148201785	G	A	100	PASS	LDAF=0.0013;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.3078;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0006;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.02,-1.35,-5	0|0:0:-0.11,-0.65,-4.22	0|0:0:-0.05,-0.96,-4	0|0:0:-0,-1.97,-5	0|0:0:-0.12,-0.63,-3.92
22	50690791	rs182355564	T	G	100	PASS	ERATE=0.0004;AVGPOST=0.9985;AA=T;AN=2184;VT=SNP;THETA=0.0006;AC=5;LDAF=0.003;SNPSOURCE=LOWCOV;RSQ=0.7919;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-2.29,-5	0|0:0:-0.05,-0.99,-5	0|0:0:-0.11,-0.66,-4.7	0|0:0:-0.07,-0.84,-5
22	50692262	rs148513377	C	T	100	PASS	AA=C;RSQ=0.7151;AN=2184;AVGPOST=0.9996;VT=SNP;THETA=0.0006;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-2.56,-5	0|0:0:-0,-2.49,-5	0|0:0:-0.01,-1.49,-5	0|0:0:-0.07,-0.86,-5
22	50692272	rs115145844	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;RSQ=0.6319;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-2.2,-5	0|0:0:-0,-2.2,-5	0|0:0:-0.01,-1.66,-5	0|0:0:-0.11,-0.65,-4.7
22	50692853	rs2880034	G	A	100	PASS	THETA=0.0002;LDAF=0.659;AA=g;AN=2184;VT=SNP;RSQ=0.8456;AC=1471;ERATE=0.0011;SNPSOURCE=LOWCOV;AVGPOST=0.8912;AF=0.67;ASN_AF=0.64;AMR_AF=0.66;AFR_AF=0.88;EUR_AF=0.57	GT:DS:GL	1|1:1.95:-5,-0.65,-0.11	1|0:0.95:-0.48,-0.48,-0.48	1|1:1.55:-0.48,-0.48,-0.48	0|0:0.2:-0.21,-0.42,-1.9	1|0:1:-0.48,-0.48,-0.48
22	50693340	rs5771280	A	T	100	PASS	AC=1783;ERATE=0.0004;AA=T;AN=2184;VT=SNP;AVGPOST=0.9989;LDAF=0.8152;RSQ=0.9973;SNPSOURCE=LOWCOV;THETA=0.0007;AF=0.82;ASN_AF=0.86;AMR_AF=0.78;AFR_AF=0.96;EUR_AF=0.7	GT:DS:GL	1|1:2:-5,-1.46,-0.02	1|0:1:-4,-0,-2.94	1|1:2:-5,-2.93,-0	1|0:1:-5,-0.04,-1.06	1|0:1:-4.7,-0,-5
22	50693899	.	G	A	100	PASS	AA=g;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50693939	.	G	C	100	PASS	AA=G;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.9594;SNPSOURCE=EXOME;LDAF=0.0014;ERATE=0.0006;AC=3;AVGPOST=0.9999;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50695586	.	G	T	100	PASS	RSQ=0.9049;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50695651	rs148564423	G	A	100	PASS	THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;AC=6;VT=SNP;RSQ=0.9852;LDAF=0.0028;ERATE=0.0003;AVGPOST=0.9999;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.42,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-3.59,-5	0|0:0:0,-5,-5
22	50697636	rs1076650	G	A	100	PASS	ERATE=0.0014;AC=923;AVGPOST=0.9888;AA=G;AN=2184;VT=SNP;THETA=0.0011;SNPSOURCE=LOWCOV;LDAF=0.423;RSQ=0.9841;AF=0.42;ASN_AF=0.48;AMR_AF=0.5;AFR_AF=0.43;EUR_AF=0.34	GT:DS:GL	0|1:1:-5,-0,-3.34	1|0:1:-5,-0,-4.7	1|0:1:-5,0,-5	0|0:0:-0.1,-0.67,-4.22	0|0:0:-0.01,-1.68,-5
22	50698586	rs115334265	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;LDAF=0.0093;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;RSQ=0.939;AC=19;THETA=0.0003;AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0,-2.01,-5	0|0:0:-0.01,-1.54,-5	0|0:0:-0.03,-1.21,-5	0|0:0:-0.01,-1.92,-5	0|0:0:-0.06,-0.86,-5
22	50700049	rs187578301	T	C	100	PASS	ERATE=0.0073;AN=2184;AC=151;THETA=0.0008;LDAF=0.1119;VT=SNP;AA=-;RSQ=0.4109;SNPSOURCE=LOWCOV;AVGPOST=0.8521;AF=0.07;ASN_AF=0.08;AMR_AF=0.08;AFR_AF=0.08;EUR_AF=0.05	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0.1:-0.48,-0.48,-0.48	1|0:0.6:-0.48,-0.48,-0.48	0|0:0.15:-0.48,-0.48,-0.48	0|0:0.3:-0.48,-0.48,-0.48
22	50702003	rs181245504	C	T	100	PASS	ERATE=0.0004;AN=2184;LDAF=0.001;VT=SNP;AA=c;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4645;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.02,-1.3,-5	0|0:0:-0.02,-1.35,-5	0|0:0:-0.12,-0.6,-3	0|0:0:-0.19,-0.46,-2.42	0|0:0:-0.06,-0.88,-5
22	50702076	rs61760607	C	T	100	PASS	ERATE=0.0005;RSQ=0.962;THETA=0.0015;AN=2184;VT=SNP;AA=c;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=27;LDAF=0.0128;AF=0.01;AMR_AF=0.01;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.02,-1.46,-5	0|0:0:-0.19,-0.45,-2.15	0|0:0:-0.08,-0.76,-5	0|0:0:-0.03,-1.15,-5
22	50703850	.	G	A	100	PASS	AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0025;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-1.99,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50704357	rs11704249	C	T	100	PASS	AA=C;AC=768;AN=2184;LDAF=0.3869;VT=SNP;RSQ=0.5804;ERATE=0.0585;SNPSOURCE=LOWCOV;THETA=0.0003;AVGPOST=0.7824;AF=0.35;ASN_AF=0.32;AMR_AF=0.4;AFR_AF=0.25;EUR_AF=0.42	GT:DS:GL	0|1:1:-2.3,-0.01,-1.99	1|0:0.7:-0.48,-0.48,-0.48	1|0:0.85:-0.12,-0.62,-2.28	0|1:0.6:-0.18,-0.47,-2.16	0|1:1.1:-3.55,-0.48,-0.18
22	50704402	rs80139320	C	T	100	PASS	AC=603;AVGPOST=0.8262;LDAF=0.3215;AA=C;ERATE=0.0797;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;RSQ=0.6028;AF=0.28;ASN_AF=0.23;AMR_AF=0.29;AFR_AF=0.3;EUR_AF=0.29	GT:DS:GL	0|0:0.2:-0.06,-0.92,-5	0|1:0.6:-0.23,-0.45,-1.26	1|0:1.2:-2.38,-0.46,-0.19	0|0:0.15:-0.18,-0.47,-2.44	0|0:0.25:-0.1,-0.67,-5
22	50704568	rs142107539	C	G	100	PASS	THETA=0.0022;AN=2184;AVGPOST=0.9997;RSQ=0.9139;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0012;AC=3;AF=0.0014;ASN_AF=0.01	GT:DS:GL	0|0:0:-0,-2.42,-5	0|0:0:-0,-3.52,-5	0|0:0:0,-5,-5	0|0:0:-0.01,-1.75,-5	0|0:0:-0,-2.39,-5
22	50704889	rs36014260	G	A	100	PASS	AC=7;LDAF=0.0033;THETA=0.0002;RSQ=0.9621;AA=g;AN=2184;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-4,-5	0|0:0:-0.01,-1.49,-5	0|0:0:-0.22,-0.46,-1.27	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50704951	.	A	C	100	PASS	AVGPOST=1;AN=2184;VT=SNP;THETA=0.0017;SNPSOURCE=EXOME;RSQ=1;AC=1;AA=a;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.74,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50705047	.	G	A	100	PASS	AA=g;AN=2184;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;RSQ=0.789;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50705304	rs760747	C	T	100	PASS	THETA=0.0047;AN=2184;VT=SNP;AA=c;LDAF=0.2325;SNPSOURCE=LOWCOV;AC=506;ERATE=0.0028;AVGPOST=0.9978;RSQ=0.995;AF=0.23;ASN_AF=0.24;AMR_AF=0.37;AFR_AF=0.12;EUR_AF=0.24	GT:DS:GL	0|0:0:-0,-3.25,-5	0|1:1:-5,-0,-3.47	1|0:1:-5,-0.18,-0.47	0|1:1:-5,0,-5	0|1:1:-5,0,-5
22	50705466	rs760748	A	G	100	PASS	AVGPOST=0.971;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.7061;VT=SNP;LDAF=0.9612;ERATE=0.0195;AC=2113;THETA=0.0003;AF=0.97;ASN_AF=0.98;AMR_AF=0.98;AFR_AF=0.95;EUR_AF=0.97	GT:DS:GL	1|1:2:-5,-3.49,-0	1|1:1.65:-5,-0.19,-0.46	1|1:1.8:-5,-0.12,-0.61	1|1:2:-5,-5,0	1|1:2:-5,-5,0
22	50705921	rs35998394	G	A	100	PASS	ERATE=0.0004;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9578;AVGPOST=0.9989;THETA=0.0037;LDAF=0.0097;AC=21;AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0.02,-1.46,-5	0|0:0:-0,-2.24,-5	0|0:0:-0,-2.39,-5	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-2.07,-5
22	50705947	.	C	T	100	PASS	THETA=0.0009;ERATE=0.0005;LDAF=0.0035;AN=2184;RSQ=0.7321;AC=6;VT=SNP;AA=c;SNPSOURCE=EXOME;AVGPOST=0.9974;AF=0.0027;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.7,-5	0|0:0:-0.3,-0.43,-0.89	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.66,-4.7	0|0:0:-0.05,-0.96,-5
22	50707116	rs61760592	G	C	100	PASS	AC=12;ERATE=0.0004;LDAF=0.0058;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.9402;AVGPOST=0.9992;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.06,-5	0|0:0:-0.04,-1.03,-5	0|0:0:-0.02,-1.37,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.04,-1.11,-5
22	50708594	rs34355047	C	T	100	PASS	AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9083;VT=SNP;LDAF=0.1836;AC=354;ERATE=0.0065;THETA=0.0062;RSQ=0.7761;AF=0.16;ASN_AF=0.22;AMR_AF=0.15;AFR_AF=0.03;EUR_AF=0.21	GT:DS:GL	0|0:0:-0.02,-1.47,-5	0|0:0.35:-0.48,-0.48,-0.48	0|0:0.05:-0.48,-0.48,-0.48	0|0:0.1:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50709987	rs1003969	T	C	100	PASS	AA=C;AC=1130;AN=2184;VT=SNP;RSQ=0.8975;AVGPOST=0.9284;LDAF=0.5251;THETA=0.0121;SNPSOURCE=LOWCOV;ERATE=0.0029;AF=0.52;ASN_AF=0.42;AMR_AF=0.67;AFR_AF=0.62;EUR_AF=0.45	GT:DS:GL	0|1:1:-5,-0,-3.47	0|1:1:-0.37,-0.44,-0.67	0|0:0.15:-0.48,-0.48,-0.48	0|1:1:-0.1,-0.7,-4.7	0|1:1:-0.19,-0.46,-2.18
22	50710857	rs115771889	C	T	100	PASS	AC=17;ERATE=0.0005;AA=C;AN=2184;RSQ=0.8534;LDAF=0.009;VT=SNP;THETA=0.0053;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.11,-0.63,-3.34	0|0:0:-0.05,-0.99,-4.7	0|0:0:-0.07,-0.81,-5	0|0:0:-0.48,-0.48,-0.48
22	50711957	rs192847878	C	G	100	PASS	ERATE=0.0013;AA=C;LDAF=0.0078;AN=2184;VT=SNP;AC=10;THETA=0.0011;AVGPOST=0.9908;SNPSOURCE=LOWCOV;RSQ=0.537;AF=0.0046;AFR_AF=0.01;EUR_AF=0.004	GT:DS:GL	0|0:0.05:-0.06,-0.9,-5	0|0:0.1:-0.48,-0.48,-0.48	0|0:0:-0.02,-1.43,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.12,-0.61,-3.8
22	50712207	rs111533603	G	C	100	PASS	ERATE=0.0005;AA=g;AN=2184;THETA=0.0031;LDAF=0.0124;AVGPOST=0.999;VT=SNP;RSQ=0.9618;SNPSOURCE=LOWCOV;AC=27;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.02,-1.4,-5	0|0:0:-0.08,-0.76,-5	0|0:0:-0.01,-1.59,-5	0|0:0:-0.19,-0.47,-2.1	0|0:0:-0.06,-0.86,-5
22	50712274	rs184146769	G	A	100	PASS	AA=G;AN=2184;THETA=0.0041;VT=SNP;AVGPOST=0.9993;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.7217;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-2.03,-5	0|0:0:-0.13,-0.59,-3.03	0|0:0:-0.05,-0.95,-5	0|0:0:-0.18,-0.48,-2.21	0|0:0:-0.13,-0.59,-3.59
22	50712745	rs140284318	G	A	100	PASS	AA=G;AN=2184;VT=SNP;THETA=0.0017;LDAF=0.002;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.4252;AC=2;AVGPOST=0.9974;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.01,-5	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.01,-1.89,-5	0|0:0:-0.06,-0.89,-5	0|0:0:-0.11,-0.64,-4.1
22	50714320	rs149124212	C	T	100	PASS	LDAF=0.0024;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;THETA=0.0012;AC=4;ERATE=0.0003;RSQ=0.9099;AVGPOST=0.9995;AF=0.0018;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-3.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50714389	rs180698014	G	A	100	PASS	AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50714491	rs6010224	A	C	100	PASS	RSQ=0.9882;AA=C;THETA=0.0014;LDAF=0.538;AN=2184;VT=SNP;ERATE=0.001;AC=1178;SNPSOURCE=LOWCOV;AVGPOST=0.9925;AF=0.54;ASN_AF=0.46;AMR_AF=0.66;AFR_AF=0.67;EUR_AF=0.46	GT:DS:GL	0|1:1:-5,0,-5	0|1:0.95:-1.39,-0.02,-3.28	0|0:0:-0.13,-0.6,-2.15	0|1:1:-5,0,-5	0|1:1:-5,-0,-3.44
22	50715609	rs28451513	A	G	100	PASS	ERATE=0.0004;THETA=0.0014;AN=2184;VT=SNP;LDAF=0.0162;AA=A;AC=32;SNPSOURCE=LOWCOV;RSQ=0.9111;AVGPOST=0.996;AF=0.01;AMR_AF=0.02;AFR_AF=0.05;EUR_AF=0.004	GT:DS:GL	0|0:0:-0,-2.6,-5	0|0:0:-0.19,-0.45,-2.2	0|0:0:-0.11,-0.65,-4.22	0|0:0:-0.01,-1.79,-5	0|0:0:-0.04,-1.09,-5
22	50716375	rs187332808	G	A	100	PASS	AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.22,-5	0|0:0:-0,-3.17,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50719652	rs185630451	G	A	100	PASS	THETA=0.0015;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.009;VT=SNP;RSQ=0.9578;ERATE=0.0003;AC=19;AVGPOST=0.9992;AF=0.01;AMR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.4,-5	0|0:0:-0.07,-0.82,-3.49	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0,-3.38,-5	0|0:0:-0,-3.47,-5
22	50719869	.	G	A	100	PASS	RSQ=0.6009;THETA=0.0035;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=5;AVGPOST=0.997;ERATE=0.0007;LDAF=0.0031;AF=0.0023;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-4,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0,-4.22,-5	0|0:0:-0,-3.36,-5
22	50719942	.	C	T	100	PASS	ERATE=0.0004;AA=C;RSQ=0.7001;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=EXOME;THETA=0.0049;AVGPOST=0.9984;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.4,-5	0|0:0:-0.06,-0.88,-3.8	0|0:0:-0.07,-0.81,-4.1	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50720622	rs11547728	C	T	100	PASS	ERATE=0.0004;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.377;AVGPOST=0.9879;AC=819;THETA=0.0012;RSQ=0.9804;AF=0.38;ASN_AF=0.31;AMR_AF=0.31;AFR_AF=0.33;EUR_AF=0.48	GT:DS:GL	1|0:1:-5,0,-5	1|0:1.1:-5,-1,-0.05	1|1:2:-5,-0.74,-0.09	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50721170	.	C	T	100	PASS	LDAF=0.0013;AA=C;THETA=0.0061;AN=2184;AVGPOST=0.999;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;RSQ=0.7068;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-3.22,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4,-5	0|0:0:-0,-2.25,-5
22	50721188	rs79500228	C	T	100	PASS	ERATE=0.0005;AA=C;RSQ=0.7399;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AVGPOST=0.9993;THETA=0.0012;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0017;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-4.22,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.54,-5
22	50721207	.	C	T	100	PASS	THETA=0.0048;AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.7,-5
22	50721758	.	G	A	100	PASS	ERATE=0.0004;THETA=0.0032;AA=G;AN=2184;VT=SNP;LDAF=0.0019;SNPSOURCE=EXOME;AC=4;AVGPOST=0.9995;RSQ=0.8662;AF=0.0018;ASN_AF=0.0035;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-3.8,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.4,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5
22	50722167	rs28470336	T	C	100	PASS	LDAF=0.0273;SNPSOURCE=LOWCOV,EXOME;AA=T;AN=2184;RSQ=0.8151;VT=SNP;ERATE=0.0038;AC=53;THETA=0.001;AVGPOST=0.9867;AF=0.02;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.05	GT:DS:GL	0|0:0:-0,-2.53,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.7,-5	1|0:1:-5,0,-5	0|0:0:0,-5,-5
22	50722277	rs77569471	C	T	100	PASS	AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=45;RSQ=0.8768;LDAF=0.0239;VT=SNP;THETA=0.0095;ERATE=0.003;AVGPOST=0.992;AF=0.02;AMR_AF=0.01;AFR_AF=0.09	GT:DS:GL	0|0:0:-0,-3.74,-5	0|0:0:-0,-4.7,-5	0|0:0:-0.01,-1.9,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-3.03,-5
22	50722534	.	G	A	100	PASS	THETA=0.0015;AA=g;AVGPOST=0.9946;LDAF=0.0047;AN=2184;RSQ=0.5245;VT=SNP;ERATE=0.0008;SNPSOURCE=EXOME;AC=5;AF=0.0023;ASN_AF=0.0035;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.88,-5	0|0:0:-0.12,-0.62,-2.41	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0,-4.7,-5	0|0:0:-0.02,-1.33,-5
22	50724207	rs28553432	G	A	100	PASS	AC=387;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.1765;RSQ=0.9946;AVGPOST=0.9973;ERATE=0.0003;AF=0.18;ASN_AF=0.06;AMR_AF=0.08;AFR_AF=0.57;EUR_AF=0.06	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50724515	.	G	A	100	PASS	AA=G;AN=2184;RSQ=0.8251;AVGPOST=0.9996;VT=SNP;THETA=0.0017;SNPSOURCE=EXOME;LDAF=0.0011;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-3.8,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50724910	rs116107692	G	A	100	PASS	AA=G;AN=2184;AC=13;THETA=0.0008;VT=SNP;AVGPOST=0.998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0069;RSQ=0.8882;AF=0.01;AMR_AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-3.32,-5	0|0:0:-0.22,-0.46,-1.3	0|0:0:-0.1,-0.69,-3.8	0|0:0:-0.06,-0.87,-5	0|0:0:-0.03,-1.14,-5
22	50726477	rs184734526	G	A	100	PASS	ERATE=0.0005;RSQ=0.4273;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0019;AVGPOST=0.9971;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0.05:-0.37,-0.24,-5	0|0:0:-0,-1.99,-5	0|0:0:-0.23,-0.46,-1.23	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0.06,-0.91,-5
22	50726510	rs114105729	C	T	100	PASS	ERATE=0.0004;RSQ=0.9405;AVGPOST=0.9986;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;AC=20;LDAF=0.0098;VT=SNP;THETA=0.0003;AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0.02,-1.27,-5	0|0:0:-0.13,-0.59,-2.84	0|0:0:-0.05,-0.97,-5	0|0:0:-0.11,-0.66,-5
22	50726627	rs58705604	G	A	100	PASS	AC=88;ERATE=0.0005;AVGPOST=0.9963;AA=G;AN=2184;VT=SNP;LDAF=0.0415;RSQ=0.9636;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.04;ASN_AF=0.05;AMR_AF=0.02;AFR_AF=0.08;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.04,-1.02,-5	0|0:0:-0.19,-0.45,-2.2	0|0:0:-0.23,-0.46,-1.21	0|0:0:-0.05,-1,-5	0|0:0:-0.19,-0.45,-2.15
22	50726701	rs145440088	G	A	100	PASS	AC=7;ERATE=0.0004;AA=G;AN=2184;RSQ=0.7954;THETA=0.0008;VT=SNP;LDAF=0.0038;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.0032;AFR_AF=0.01;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.08,-0.79,-3.36	0|0:0:-0.22,-0.46,-1.26	0|0:0:-0.02,-1.42,-5	0|0:0:-0.06,-0.89,-5
22	50726967	rs113214119	G	A	100	PASS	AA=G;AN=2184;VT=SNP;LDAF=0.0019;RSQ=0.6761;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=3;ERATE=0.0007;THETA=0.0003;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0,-2.01,-5	0|0:0:-0,-2.4,-5	0|0:0:-0.02,-1.4,-5	0|0:0:-0,-1.96,-5
22	50727931	rs186384452	C	T	100	PASS	ERATE=0.0004;AA=C;RSQ=0.6008;AN=2184;THETA=0.0008;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-2.78,-5	0|0:0:-0.08,-0.79,-3.17	0|0:0:-0,-2.93,-5	0|0:0:-0,-4.1,-5
22	50728168	rs141718957	G	A	100	PASS	THETA=0.0009;ERATE=0.0004;RSQ=0.906;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;LDAF=0.0101;AC=21;AVGPOST=0.9974;AF=0.01;AMR_AF=0.0028;AFR_AF=0.04	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.1,-0.68,-2.73	0|0:0:-0.23,-0.46,-1.24	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50730458	rs28535173	G	T	100	PASS	ERATE=0.0005;THETA=0.0015;AA=T;AN=2184;LDAF=0.6897;VT=SNP;AC=1506;RSQ=0.9686;SNPSOURCE=LOWCOV;AVGPOST=0.9819;AF=0.69;ASN_AF=0.76;AMR_AF=0.61;AFR_AF=0.59;EUR_AF=0.74	GT:DS:GL	0|1:1.05:-5,-0.03,-1.25	0|0:0:-0.01,-1.71,-5	1|1:2:-5,-0.68,-0.1	1|1:2:-5,-1.51,-0.01	1|1:2:-5,-1.57,-0.01
22	50730937	rs144488854	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9991;THETA=0.0049;LDAF=0.0014;SNPSOURCE=LOWCOV;AC=2;RSQ=0.6891;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-2.06,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0.21,-0.47,-1.34	0|0:0:-0,-2.22,-5	0|0:0:-0.07,-0.84,-5
22	50731259	rs189950605	C	T	100	PASS	ERATE=0.0004;THETA=0.0039;AA=C;AN=2184;RSQ=0.579;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0.05:-0.01,-1.82,-5	0|0:0:-0,-1.96,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.08,-0.75,-5	0|0:0:-0.07,-0.84,-5
22	50732081	rs116427942	G	A	100	PASS	THETA=0.0002;AA=G;AN=2184;AVGPOST=0.9894;VT=SNP;ERATE=0.001;LDAF=0.0238;AC=44;SNPSOURCE=LOWCOV;RSQ=0.8052;AF=0.02;ASN_AF=0.0035;AMR_AF=0.02;AFR_AF=0.07;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.03,-1.11,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0.19,-0.45,-2.13
22	50733086	rs138317891	C	A	100	PASS	ERATE=0.0004;AA=C;AVGPOST=0.9983;AN=2184;RSQ=0.7519;VT=SNP;THETA=0.0011;LDAF=0.0028;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0.01,-1.49,-5	0|0:0:-0,-1.97,-5	0|0:0:-0,-1.98,-5	0|0:0:-0,-2.89,-5
22	50733704	rs148553838	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5913;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=2;LDAF=0.0017;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.75,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.07,-0.81,-5	0|0:0:-0.18,-0.48,-2.18	0|0:0:-0.12,-0.61,-4.7
22	50734368	rs113653012	T	A	100	PASS	AVGPOST=0.9936;THETA=0.0004;AA=T;AN=2184;AC=29;VT=SNP;LDAF=0.0157;SNPSOURCE=LOWCOV;ERATE=0.0006;RSQ=0.8303;AF=0.01;ASN_AF=0.0035;AFR_AF=0.05	GT:DS:GL	0|0:0:-0,-2.94,-5	0|0:0:-0.21,-0.43,-1.84	0|0:0:-0.2,-0.45,-2.1	0|0:0:-0.03,-1.2,-5	0|0:0:-0.48,-0.48,-0.48
22	50734691	rs115625517	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;LDAF=0.0018;THETA=0.0005;VT=SNP;RSQ=0.8073;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.76,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.12,-0.63,-3.92	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.18,-0.46,-3.01
22	50736787	rs68097952	A	G	100	PASS	RSQ=0.9831;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=598;THETA=0.002;AVGPOST=0.992;LDAF=0.2749;AF=0.27;ASN_AF=0.27;AMR_AF=0.19;AFR_AF=0.32;EUR_AF=0.29	GT:DS:GL	0|0:0:-0.02,-1.27,-5	0|0:0.05:-0.12,-0.63,-3.3	0|0:0:-0.19,-0.46,-2.2	1|0:1:-5,-0.89,-0.06	0|0:0:-0.12,-0.63,-4.7
22	50737264	rs112047368	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9986;THETA=0.0004;AA=G;AN=2184;AC=37;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.9654;LDAF=0.0176;AF=0.02;AMR_AF=0.02;AFR_AF=0.06	GT:DS:GL	0|0:0:-0.03,-1.17,-5	0|0:0:-0.08,-0.8,-4.7	0|0:0:-0.07,-0.82,-4.7	0|0:0:-0.19,-0.46,-2.4	0|0:0:-0.06,-0.86,-5
22	50738658	rs193185158	G	A	100	PASS	ERATE=0.0013;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0074;RSQ=0.5205;SNPSOURCE=LOWCOV;AC=11;AVGPOST=0.992;AF=0.01;ASN_AF=0.01;AFR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.1,-0.68,-5	0|0:0:-0.04,-1.07,-5	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.15,-0.55,-3.01	0|0:0:-0.48,-0.48,-0.48
22	50741145	rs28714287	C	G	100	PASS	LDAF=0.9992;AN=2184;VT=SNP;RSQ=0.0656;AC=2184;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AVGPOST=0.9984;AA=t;AF=1;ASN_AF=1;AMR_AF=1;AFR_AF=1;EUR_AF=1	GT:DS:GL	1|1:2:-4.7,-0.66,-0.11	1|1:2:-2.32,-0.13,-0.59	1|1:2:-2.97,-0.48,-0.18	1|1:2:-2.85,-0.46,-0.19	1|1:2:-5,-0.7,-0.1
22	50742313	rs146136062	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;RSQ=0.6056;VT=SNP;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9968;ERATE=0.0006;LDAF=0.0031;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.01,-1.8,-5	0|0:0:-0.21,-0.46,-1.35	0|0:0:-0.13,-0.6,-2.21	0|0:0:-0.11,-0.66,-4.22	0|0:0:-0.19,-0.46,-2.9
22	50742935	rs34544325	A	G	100	PASS	ERATE=0.0023;AA=G;AN=2184;AVGPOST=0.9878;LDAF=0.6508;VT=SNP;RSQ=0.9786;SNPSOURCE=LOWCOV;THETA=0.0007;AC=1427;AF=0.65;ASN_AF=0.67;AMR_AF=0.61;AFR_AF=0.75;EUR_AF=0.6	GT:DS:GL	1|0:1:-5,-0,-4.4	0|1:1:-4,-0.02,-1.27	0|0:0:-0.2,-0.44,-5	1|0:1:-4.4,-0.02,-1.44	0|0:0:-0.04,-1.07,-5
22	50744048	rs77023739	G	A	100	PASS	THETA=0.0004;RSQ=0.9609;AA=G;AN=2184;AVGPOST=0.9981;VT=SNP;AC=43;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0203;AF=0.02;AMR_AF=0.01;AFR_AF=0.08	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.07,-0.83,-4.4	0|0:0:-0.08,-0.79,-4	0|0:0:-0.19,-0.47,-2.1	0|0:0:-0.2,-0.44,-2.02
22	50744339	rs73437489	C	G	100	PASS	LDAF=0.0884;AA=C;THETA=0.0004;AN=2184;AC=191;VT=SNP;AVGPOST=0.9953;ERATE=0.0008;SNPSOURCE=LOWCOV;RSQ=0.9766;AF=0.09;ASN_AF=0.03;AMR_AF=0.03;AFR_AF=0.28;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.18,-0.46,-2.78	0|0:0:-0.23,-0.45,-1.21	0|0:0:-0.25,-0.45,-1.12	0|0:0:-0.18,-0.48,-2.19	0|0:0:-0.48,-0.48,-0.48
22	50744849	rs147622171	G	A	100	PASS	AA=G;AN=2184;AVGPOST=0.9944;RSQ=0.6696;VT=SNP;AC=10;LDAF=0.0061;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.0046;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0,-2.6,-5	0|0:0:-0.03,-1.19,-5	0|0:0:-0.36,-0.41,-0.78	0|0:0:-0.04,-1.11,-5
22	50746670	.	TCTCA	T	168	PASS	ERATE=0.0004;AN=2184;LDAF=0.0142;VT=INDEL;AVGPOST=0.9908;AC=27;RSQ=0.7659;THETA=0.0003;AF=0.01;ASN_AF=0.04;EUR_AF=0.004	GT:DS:GL	0|0:0:0,-1.2,-32.4	0|0:0:0,-0.3,-8.1	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0
22	50748726	rs143545602	T	C	100	PASS	THETA=0.0009;LDAF=0.0027;AA=T;AN=2184;VT=SNP;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;RSQ=0.7903;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.6,-5	0|0:0:-0,-2.3,-5	0|0:0:-0.15,-0.54,-5	0|0:0:-0.01,-1.93,-5	0|0:0:-0.07,-0.86,-5
22	50750045	rs141191561	G	T	100	PASS	ERATE=0.0004;THETA=0.0014;AA=g;AN=2184;RSQ=0.9518;VT=SNP;AC=9;LDAF=0.0044;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.5,-5	0|0:0:-0,-2.03,-5	0|0:0.05:-0.57,-0.14,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.02,-1.35,-5
22	50750242	rs181277120	C	T	100	PASS	ERATE=0.0004;AN=2184;LDAF=0.0015;VT=SNP;AA=c;THETA=0.0028;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=2;RSQ=0.6386;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.04,-1.09,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.07,-0.83,-5	0|0:0:-0.07,-0.81,-5
22	50750835	rs117291362	G	A	100	PASS	THETA=0.0009;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.996;AC=80;AVGPOST=0.9997;VT=SNP;LDAF=0.0366;ERATE=0.0003;AF=0.04;ASN_AF=0.11;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50751594	rs189121341	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;AVGPOST=0.999;VT=SNP;RSQ=0.8262;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004	GT:DS:GL	0|0:0:-0,-1.98,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0.02,-1.39,-5
22	50751884	rs180969906	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.5953;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9992;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0.03,-1.18,-5	0|0:0:-0,-2.43,-5
22	50754052	rs71964200	TACTC	T	1792	PASS	AN=2184;VT=INDEL;ERATE=0.0026;AVGPOST=0.9919;AC=689;THETA=0.0007;LDAF=0.3142;RSQ=0.985;AF=0.32;ASN_AF=0.29;AMR_AF=0.33;AFR_AF=0.27;EUR_AF=0.35	GT:DS:GL	0|1:1:-15.9,0,-14.9	1|0:1:0,-0.3,-8.2	1|1:2:-8.9,-0.6,0	0|0:0:0,-0.3,-8.2	1|0:1:0,-0.3,-4
22	50754416	.	C	T	100	PASS	AA=C;THETA=0.0004;AN=2184;RSQ=0.819;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.08,-5	0|0:0:-0,-4.1,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50755552	rs188315175	G	A	100	PASS	THETA=0.0004;AN=2184;AC=185;AVGPOST=0.9869;VT=SNP;ERATE=0.001;AA=A;RSQ=0.9344;SNPSOURCE=LOWCOV;LDAF=0.0865;AF=0.08;ASN_AF=0.03;AMR_AF=0.04;AFR_AF=0.25;EUR_AF=0.05	GT:DS:GL	0|0:0:-0.11,-0.66,-5	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0.05:-0.2,-0.44,-2.61
22	50755782	rs145811594	G	A	100	PASS	THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;RSQ=0.8517;AC=11;ERATE=0.0006;LDAF=0.005;AVGPOST=0.9982;AF=0.01;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50755794	rs192204156	C	G	100	PASS	AA=C;THETA=0.0004;RSQ=0.876;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-4.22,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50755840	.	C	T	100	PASS	AA=C;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;RSQ=0.7933;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50755960	rs80042432	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;AVGPOST=0.9975;VT=SNP;RSQ=0.9359;AC=33;SNPSOURCE=LOWCOV;THETA=0.0013;LDAF=0.0155;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07	GT:DS:GL	0|0:0:-0,-2.26,-5	0|0:0:-0.01,-1.79,-5	0|0:0:-0.09,-0.71,-3.62	0|0:0:-0,-2.82,-5	0|0:0:-0,-3.66,-5
22	50756486	.	G	A	100	PASS	LDAF=0.0009;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.5624;AVGPOST=0.9992;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-1.99,-5	0|0:0:-0.01,-1.67,-5	0|0:0:-0,-3.11,-5	0|0:0:-0,-3.12,-5
22	50757059	rs148038563	A	G	100	PASS	AC=7;ERATE=0.0004;AN=2184;VT=SNP;RSQ=0.8898;AA=A;AVGPOST=0.9989;LDAF=0.0038;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.31,-5	0|0:0:-0.06,-0.86,-3.7	0|0:0:-0.12,-0.62,-3.13	0|0:0:-0.05,-0.94,-5	0|0:0:-0.01,-1.65,-5
22	50757242	rs185110140	C	T	100	PASS	ERATE=0.0005;LDAF=0.0021;AA=C;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=4;AVGPOST=0.9995;RSQ=0.8869;THETA=0.0003;AF=0.0018;AMR_AF=0.0028;EUR_AF=0.004	GT:DS:GL	0|0:0:-0,-4.22,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.39,-5	0|0:0:0,-5,-5
22	50758701	rs62241236	G	T	100	PASS	AC=1181;THETA=0.0002;LDAF=0.542;AA=G;AN=2184;VT=SNP;RSQ=0.9948;SNPSOURCE=LOWCOV;AVGPOST=0.9968;ERATE=0.0006;AF=0.54;ASN_AF=0.58;AMR_AF=0.61;AFR_AF=0.38;EUR_AF=0.58	GT:DS:GL	1|0:1:-5,-0.01,-1.81	0|1:1:-5,-0,-3.85	0|0:0:-0.13,-0.59,-3.66	1|1:2:-5,-0.76,-0.08	0|1:1:-1.6,-0.01,-4.7
22	50760606	rs183166435	A	C	100	PASS	AC=28;AN=2184;VT=SNP;ERATE=0.0017;THETA=0.0006;RSQ=0.6574;LDAF=0.017;AVGPOST=0.9862;SNPSOURCE=LOWCOV;AA=a;AF=0.01;ASN_AF=0.01;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.68,-4.4	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.25,-0.44,-1.09	0|0:0:-0.03,-1.15,-5	0|0:0:-0.48,-0.48,-0.48
22	50761123	rs150326382	G	A	100	PASS	AVGPOST=0.9983;AA=G;AN=2184;RSQ=0.5765;THETA=0.0005;VT=SNP;LDAF=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=3;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.55,-5	0|0:0:-0.2,-0.45,-2.08	0|0:0:-0.13,-0.57,-3.49	0|0:0:-0.11,-0.66,-4.22	0|0:0:-0.48,-0.48,-0.48
22	50763167	rs117747654	C	G	100	PASS	AA=C;RSQ=0.9969;AN=2184;AVGPOST=0.9997;THETA=0.0005;VT=SNP;AC=82;SNPSOURCE=LOWCOV;LDAF=0.0373;ERATE=0.0003;AF=0.04;ASN_AF=0.11;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.08,-5	0|0:0:-0.01,-1.76,-5	0|0:0:-0,-2.24,-5	0|0:0:-0.1,-0.69,-4.1	0|0:0:-0,-2.1,-5
22	50763321	rs147938128	C	T	100	PASS	LDAF=0.0052;AA=C;RSQ=0.9583;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0,-2.6,-5	0|0:0:-0,-2.54,-5	0|0:0:-0.18,-0.47,-2.15	0|0:0:-0.02,-1.34,-5
22	50763972	rs145681542	G	T	100	PASS	ERATE=0.0005;LDAF=0.038;AA=G;AN=2184;VT=SNP;AC=82;THETA=0.0006;SNPSOURCE=LOWCOV;AVGPOST=0.9984;RSQ=0.983;AF=0.04;ASN_AF=0.11;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.04,-5	0|0:0:-0.04,-1.1,-5	0|0:0:-0.08,-0.78,-5	0|0:0:-0.1,-0.69,-4.4	0|0:0:-0.02,-1.47,-5
22	50765494	rs184071032	G	A	100	PASS	RSQ=0.4942;LDAF=0.0934;AA=G;AN=2184;AVGPOST=0.8894;VT=SNP;AC=117;THETA=0.0019;SNPSOURCE=LOWCOV;ERATE=0.0056;AF=0.05;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.14;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0.1:-0.48,-0.48,-0.48	0|0:0.5:-0.48,-0.48,-0.48	0|1:0.55:-0.48,-0.48,-0.48
22	50765842	rs140693299	G	T	100	PASS	LDAF=0.1149;AC=248;AA=G;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0012;AVGPOST=0.9824;RSQ=0.9314;AF=0.11;ASN_AF=0.19;AMR_AF=0.15;AFR_AF=0.03;EUR_AF=0.1	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|1:1:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0.48,-0.48,-0.48
22	50766290	rs142899272	T	C	100	PASS	LDAF=0.0024;RSQ=0.3238;AA=T;AN=2184;VT=SNP;THETA=0.0033;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9961;ERATE=0.0007;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0.01,-1.49,-5	0|0:0:-0.04,-1.06,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.02,-1.37,-5
22	50766996	rs188306090	C	T	100	PASS	ERATE=0.0005;THETA=0.0015;AA=C;AN=2184;VT=SNP;LDAF=0.0022;AVGPOST=0.9973;SNPSOURCE=LOWCOV;RSQ=0.5364;AC=3;AF=0.0014;AFR_AF=0.002;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-3.07,-5	0|0:0:-0.05,-0.96,-5	0|0:0:-0.07,-0.83,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0.06,-0.88,-5
22	50767351	rs140763648	A	G	100	PASS	RSQ=0.962;LDAF=0.4659;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1027;ERATE=0.0029;AVGPOST=0.9751;AF=0.47;ASN_AF=0.41;AMR_AF=0.41;AFR_AF=0.67;EUR_AF=0.41	GT:DS:GL	0|1:1:-3.11,-0,-5	1|0:1:-0.22,-0.42,-1.83	1|1:2:-0.48,-0.48,-0.48	0|0:0.1:-0.1,-0.69,-4.1	1|0:0.95:-0.48,-0.48,-0.48
22	50767407	rs146681239	T	C	100	PASS	AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9654;ERATE=0.0048;RSQ=0.9519;SNPSOURCE=LOWCOV;LDAF=0.4706;AA=t;AC=1030;AF=0.47;ASN_AF=0.38;AMR_AF=0.39;AFR_AF=0.77;EUR_AF=0.38	GT:DS:GL	0|1:1:-3.66,-0,-5	1|0:1:-0.24,-0.44,-1.16	1|1:1.95:-1.92,-0.19,-0.47	0|0:0:-0.48,-0.48,-0.48	1|0:1:-0.48,-0.48,-0.48
22	50767453	rs140286278	A	G	100	PASS	RSQ=0.9838;AA=G;AN=2184;VT=SNP;LDAF=0.4702;SNPSOURCE=LOWCOV;ERATE=0.0007;AVGPOST=0.9897;AC=1030;THETA=0.0003;AF=0.47;ASN_AF=0.41;AMR_AF=0.41;AFR_AF=0.67;EUR_AF=0.41	GT:DS:GL	0|1:1:-4.1,-0,-5	1|0:1:-1.88,-0.01,-3.21	1|1:2:-0.48,-0.48,-0.48	0|0:0.05:-0.18,-0.48,-2.18	1|0:1:-3.18,-0.49,-0.17
22	50768444	rs147484412	G	A	100	PASS	ERATE=0.0004;AA=g;RSQ=0.9608;AN=2184;LDAF=0.0043;AVGPOST=0.9996;VT=SNP;THETA=0.0006;AC=9;SNPSOURCE=LOWCOV;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.37,-5	0|0:0:-0,-2.09,-5	0|0:0:-0,-2.97,-5	0|0:0:-0.09,-0.74,-5	0|0:0:-0,-3.92,-5
22	50769076	rs182886673	G	A	100	PASS	RSQ=0.6665;AA=G;AN=2184;VT=SNP;ERATE=0.001;AVGPOST=0.9778;AC=43;SNPSOURCE=LOWCOV;LDAF=0.0261;THETA=0.0003;AF=0.02;AMR_AF=0.03;AFR_AF=0.03;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.48,-0.48,-0.48	0|0:0.15:-0.28,-0.44,-0.95	0|0:0:-0.18,-0.47,-2.15	0|0:0.25:-0.13,-0.59,-3.52
22	50769195	.	GGAGGCTTA	G	656	PASS	AVGPOST=0.9966;RSQ=0.8677;AN=2184;VT=INDEL;AC=23;THETA=0.0013;ERATE=0.0006;LDAF=0.0104;AF=0.01;AFR_AF=0.05	GT:DS:GL	0|0:0:0,-0.9,-39.5	0|0:0:0,-1.5,-60.2	0|0:0:0,-0.9,-31.7	0|0:0:0,-0.3,-12.1	0|0:0.05:0,-0.3,-3.4
22	50769456	rs146662012	G	A	100	PASS	AC=28;AA=G;AN=2184;RSQ=0.9857;THETA=0.0005;VT=SNP;LDAF=0.013;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;ASN_AF=0.05	GT:DS:GL	0|0:0:-0.02,-1.42,-5	0|0:0:-0,-1.95,-5	0|0:0:-0,-2.9,-5	0|0:0:-0,-2.26,-5	0|0:0:-0,-2.61,-5
22	50769865	rs147046920	C	T	100	PASS	AA=C;AN=2184;RSQ=0.8434;AVGPOST=0.9996;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0,-2.77,-5	0|0:0:-0,-2.02,-5	0|0:0:-0.01,-1.76,-5	0|0:0:-0,-2.88,-5
22	50770715	rs138896249	G	A	100	PASS	AA=G;AN=2184;AC=40;RSQ=0.9605;THETA=0.0005;VT=SNP;AVGPOST=0.998;LDAF=0.0185;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.06;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.45,-2.19	0|0:0:-0.01,-1.5,-5	0|0:0:-0.48,-0.48,-0.48
22	50770950	rs146190586	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;AVGPOST=0.9962;AC=6;VT=SNP;LDAF=0.0044;SNPSOURCE=LOWCOV;RSQ=0.6947;THETA=0.0003;AF=0.0027;ASN_AF=0.01	GT:DS:GL	0|0:0:-0,-2.91,-5	0|0:0:-0.04,-1.06,-5	0|0:0:-0.13,-0.58,-2.85	0|0:0:-0.1,-0.7,-4.22	0|0:0:-0.2,-0.45,-2.1
22	50771629	rs149127232	A	C	100	PASS	AN=2184;RSQ=0.9612;VT=SNP;ERATE=0.001;LDAF=0.1157;THETA=0.0006;AC=251;SNPSOURCE=LOWCOV;AA=a;AVGPOST=0.9885;AF=0.11;ASN_AF=0.02;AMR_AF=0.13;AFR_AF=0.12;EUR_AF=0.18	GT:DS:GL	0|0:0:-0,-2.05,-5	1|0:1:-5,-1.55,-0.01	1|0:1:-3.47,-0,-5	0|0:0:-0.09,-0.71,-4.7	0|0:0.4:-0.07,-0.85,-5
22	50772673	rs139045789	C	T	100	PASS	THETA=0.005;AVGPOST=0.9904;AA=C;AN=2184;VT=SNP;ERATE=0.0008;RSQ=0.9867;SNPSOURCE=LOWCOV;AC=1113;LDAF=0.5077;AF=0.51;ASN_AF=0.42;AMR_AF=0.41;AFR_AF=0.86;EUR_AF=0.39	GT:DS:GL	0|1:1:-2.05,-0,-3.62	1|0:1:-5,0,-5	1|1:2:-5,-0.9,-0.06	0|0:0:-0.06,-0.88,-5	1|0:1:-4.7,-0.04,-1.06
22	50773260	rs149866745	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.7234;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0012;AC=2;AVGPOST=0.9992;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.18,-0.48,-2.46	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.08,-0.79,-5	0|0:0:-0.1,-0.68,-4.1	0|0:0:-0.18,-0.47,-2.36
22	50773311	rs188045290	G	A	100	PASS	AA=G;AN=2184;LDAF=0.0018;VT=SNP;THETA=0.0055;AVGPOST=0.9993;RSQ=0.8355;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.04,-1.01,-5	0|0:0:-0.05,-0.99,-4.7	0|0:0:-0.18,-0.48,-2.19	0|0:0:-0.48,-0.48,-0.48
22	50773666	rs190924986	T	G	100	PASS	THETA=0.0009;ERATE=0.0101;AVGPOST=0.8629;AN=2184;VT=SNP;AC=555;LDAF=0.2686;SNPSOURCE=LOWCOV;RSQ=0.7134;AA=t;AF=0.25;ASN_AF=0.17;AMR_AF=0.28;AFR_AF=0.4;EUR_AF=0.22	GT:DS:GL	0|1:0.9:-0.48,-0.48,-0.48	0|0:0.35:-0.48,-0.48,-0.48	0|1:1.3:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	1|0:0.8:-0.24,-0.41,-1.49
22	50773783	rs182586766	C	T	100	PASS	RSQ=0.4558;AN=2184;AVGPOST=0.9972;VT=SNP;AA=c;ERATE=0.0008;LDAF=0.0022;SNPSOURCE=LOWCOV;THETA=0.0007;AC=3;AF=0.0014;AMR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.43,-5	0|0:0:-0.05,-0.98,-5	0|0:0:-0.13,-0.6,-3.74	0|0:0:-0.05,-0.93,-5	0|0:0:-0.48,-0.48,-0.48
22	50774261	rs142916324	C	T	100	PASS	THETA=0.0009;ERATE=0.0005;RSQ=0.5751;AN=2184;LDAF=0.0032;VT=SNP;AA=-;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9965;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0.25,-0.4,-1.39	0|0:0:-0.25,-0.44,-1.09	0|0:0:-0.1,-0.68,-4	0|0:0:-0.48,-0.48,-0.48
22	50774418	rs180702319	T	C	100	PASS	THETA=0.0009;LDAF=0.0021;AN=2184;ERATE=0.0009;VT=SNP;AA=-;AVGPOST=0.9973;SNPSOURCE=LOWCOV;AC=2;RSQ=0.5394;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.01,-1.8,-5	0|0:0:-0,-2.56,-5	0|0:0:-0.07,-0.83,-5	0|0:0.35:-0.06,-0.91,-5	0|0:0:-0.09,-0.74,-4.7
22	50778564	.	TAC	T	955	PASS	LDAF=0.1586;AN=2184;AVGPOST=0.9853;VT=INDEL;ERATE=0.0017;AC=351;THETA=0.0003;RSQ=0.9623;AF=0.16;ASN_AF=0.08;AMR_AF=0.15;AFR_AF=0.16;EUR_AF=0.22	GT:DS:GL	0|1:1.05:-2.2,-0.3,0	1|0:0.95:0,-0.3,-5.7	1|0:0.95:0,-0.6,-11.1	0|0:0:0,-3.6,-69.6	1|0:0.7:0,-0.9,-14.1
22	50778565	.	ACAGT	A	2487	PASS	THETA=0.0009;LDAF=0.1563;AN=2184;VT=INDEL;AVGPOST=0.9899;ERATE=0.0006;AC=346;RSQ=0.9733;AF=0.16;ASN_AF=0.08;AMR_AF=0.15;AFR_AF=0.16;EUR_AF=0.22	GT:DS:GL	0|1:1:-6.3,-0.3,0	1|0:0.95:0,-0.3,-8.7	1|0:0.95:0,-0.6,-14	0|0:0:0,-3.6,-103.8	1|0:0.7:0,-0.9,-22.4
22	50785166	rs73439336	G	A	100	PASS	AC=485;LDAF=0.2218;AA=g;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.9964;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.22;ASN_AF=0.2;AMR_AF=0.19;AFR_AF=0.44;EUR_AF=0.11	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.07,-0.83,-4.4	0|1:1:-0.15,-0.56,-1.96	0|0:0:-0.06,-0.9,-5	0|0:0.05:-0.19,-0.46,-2.16
22	50787080	rs141233914	C	T	100	PASS	AN=2184;LDAF=0.0032;AC=6;AVGPOST=0.999;VT=SNP;RSQ=0.8787;AA=c;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0.01,-1.5,-5	0|0:0:-0.01,-1.79,-5	0|0:0:-0.01,-1.65,-5	0|0:0:-0,-2.06,-5
22	50787371	rs139455278	A	C	100	PASS	AC=12;RSQ=0.7001;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9941;LDAF=0.0076;AA=N;AF=0.01;AMR_AF=0.02;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.15,-0.55,-2.44	0|0:0:-0.11,-0.64,-4	0|0:0:-0.19,-0.45,-2.74
22	50788224	rs142658223	A	G	100	PASS	ERATE=0.0005;AN=2184;AC=13;THETA=0.0005;VT=SNP;LDAF=0.0064;AA=A;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.9427;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0,-2.37,-5	0|0:0:-0.08,-0.8,-4.7	0|0:0:-0.07,-0.81,-5	0|0:0:-0.01,-1.53,-5	0|0:0:-0.02,-1.38,-5
22	50788848	rs62241244	T	C	100	PASS	AC=1701;AN=2184;VT=SNP;ERATE=0.0026;AVGPOST=0.9441;SNPSOURCE=LOWCOV;LDAF=0.777;THETA=0.0024;RSQ=0.8831;AA=t;AF=0.78;ASN_AF=0.74;AMR_AF=0.68;AFR_AF=0.93;EUR_AF=0.75	GT:DS:GL	0|1:1:-4.7,-0.02,-1.43	1|0:1:-0.19,-0.45,-2.2	1|1:2:-2.77,-0.49,-0.17	1|1:2:-2.82,-0.45,-0.19	1|1:1.85:-3.05,-0.48,-0.18
22	50789056	rs62241245	C	T	100	PASS	LDAF=0.8394;THETA=0.0004;AN=2184;AVGPOST=0.9068;VT=SNP;AC=1864;AA=c;RSQ=0.7476;SNPSOURCE=LOWCOV;ERATE=0.0061;AF=0.85;ASN_AF=0.81;AMR_AF=0.8;AFR_AF=0.95;EUR_AF=0.85	GT:DS:GL	0|1:0.95:-0.19,-0.46,-2.24	1|0:1:-0.48,-0.48,-0.48	1|1:2:-0.48,-0.48,-0.48	0|1:1.3:-2.64,-0.44,-0.2	1|1:1.9:-0.48,-0.48,-0.48
22	50790342	rs189956940	C	T	100	PASS	ERATE=0.0004;LDAF=0.0009;AN=2184;AVGPOST=0.999;VT=SNP;RSQ=0.532;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;AA=N;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.18,-0.47,-2.16	0|0:0:-0.48,-0.48,-0.48
22	50790837	rs182710462	G	C	100	PASS	RSQ=0.876;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0,-2.56,-5	0|0:0:-0,-4.22,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.11,-0.64,-4
22	50792215	rs185832651	A	G	100	PASS	LDAF=0.0009;AN=2184;RSQ=0.5241;AVGPOST=0.999;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0,-2.33,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0.01,-1.88,-5
22	50792445	rs58378930	A	G	100	PASS	ERATE=0.0004;AC=48;AN=2184;RSQ=0.9753;THETA=0.0005;VT=SNP;AA=A;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.0224;AF=0.02;ASN_AF=0.06;AMR_AF=0.0028;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0.02,-1.31,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.1,-0.67,-4.22	0|0:0:-0.19,-0.45,-2.15
22	50792579	rs151139695	C	G	100	PASS	ERATE=0.0005;AA=C;THETA=0.0004;AN=2184;RSQ=0.954;LDAF=0.0239;VT=SNP;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=50;AF=0.02;ASN_AF=0.06;AMR_AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.03,-1.18,-5	0|0:0:-0.24,-0.4,-1.51	0|0:0:-0.24,-0.4,-1.48	0|0:0:-0.18,-0.48,-2.18	0|0:0:-0.48,-0.48,-0.48
22	50794538	rs28840684	C	T	100	PASS	AA=C;RSQ=0.9855;AN=2184;AVGPOST=0.9935;VT=SNP;THETA=0.0017;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=506;LDAF=0.2316;AF=0.23;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.47;EUR_AF=0.12	GT:DS:GL	0|0:0:-0.07,-0.83,-5	0|0:0:-0.12,-0.62,-4	0|1:1:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50795620	rs79865452	A	G	100	PASS	ERATE=0.0004;LDAF=0.012;AN=2184;VT=SNP;AVGPOST=0.9976;AC=24;AA=A;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9099;AF=0.01;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.77,-5	0|0:0:-0,-2.35,-5	0|0:0:-0,-3.36,-5	0|0:0:-0.03,-1.14,-5	0|0:0:-0,-2.46,-5
22	50795743	rs180722556	G	C	100	PASS	ERATE=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0019;THETA=0.0006;AVGPOST=0.9989;RSQ=0.795;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0.06,-0.92,-5
22	50795853	rs189362664	C	A	100	PASS	AA=C;AN=2184;RSQ=0.4283;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=3;AVGPOST=0.9974;LDAF=0.0017;AF=0.0014;ASN_AF=0.0017;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.01,-1.78,-5	0|0:0:-0.02,-1.26,-5	0|0:0:-0.1,-0.67,-4.4	0|0:0:-0,-2.13,-5
22	50796459	rs191378132	C	T	100	PASS	LDAF=0.0021;AA=C;RSQ=0.5693;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9978;ERATE=0.0003;AF=0.0018;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0.07,-0.82,-5	0|0:0:-0.13,-0.58,-3.55	0|0:0:-0.02,-1.29,-5	0|0:0:-0.07,-0.81,-5
22	50796460	rs28638301	G	A	100	PASS	AC=545;AN=2184;RSQ=0.9684;VT=SNP;AA=A;LDAF=0.2527;ERATE=0.0016;SNPSOURCE=LOWCOV;AVGPOST=0.9819;THETA=0.0003;AF=0.25;ASN_AF=0.23;AMR_AF=0.21;AFR_AF=0.53;EUR_AF=0.1	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.04,-1.02,-5	0|1:1:-4.7,-0.66,-0.11	0|0:0:-0.02,-1.36,-5	0|0:0:-0.07,-0.83,-5
22	50798134	rs28780804	T	C	100	PASS	LDAF=0.238;AVGPOST=0.9977;AA=T;AN=2184;VT=SNP;AC=521;RSQ=0.9952;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AF=0.24;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.5;EUR_AF=0.11	GT:DS:GL	0|0:0:-0.01,-1.52,-5	0|0:0:-0,-4.4,-5	0|1:1:-3.74,-0,-5	0|0:0:-0.01,-1.77,-5	0|0:0:-0,-3.42,-5
22	50798585	rs28883654	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;LDAF=0.2306;VT=SNP;AC=505;ERATE=0.001;SNPSOURCE=LOWCOV;RSQ=0.9735;AVGPOST=0.9866;AF=0.23;ASN_AF=0.2;AMR_AF=0.2;AFR_AF=0.49;EUR_AF=0.1	GT:DS:GL	0|0:0:-0.03,-1.13,-5	0|0:0.05:-0.48,-0.48,-0.48	0|1:1:-1.15,-0.39,-0.28	0|0:0:-0.11,-0.66,-3.85	0|0:0:-0.21,-0.44,-1.92
22	50799397	rs147244337	T	A	100	PASS	AA=T;AN=2184;RSQ=0.5797;VT=SNP;THETA=0.0012;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9987;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2.69,-5	0|0:0:-0,-2.58,-5	0|0:0:-0,-2.55,-5	0|0:0:-0.05,-0.98,-5	0|0:0:-0.01,-1.56,-5
22	50799684	rs28500484	A	C	100	PASS	ERATE=0.0004;RSQ=0.9886;THETA=0.0002;LDAF=0.0374;AN=2184;AVGPOST=0.999;VT=SNP;AC=81;AA=A;SNPSOURCE=LOWCOV;AF=0.04;ASN_AF=0.1;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.71,-5	0|0:0:-0,-3.11,-5	0|0:0:-0,-2.91,-5	0|0:0:-0,-2.02,-5	0|0:0:-0.01,-1.87,-5
22	50799874	rs116200214	G	A	100	PASS	ERATE=0.0004;RSQ=0.9709;AVGPOST=0.9994;AA=G;AN=2184;AC=20;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;LDAF=0.0091;AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0,-2.04,-5	0|0:0:-0,-3.34,-5	0|0:0:-0,-2.34,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0,-4.4,-5
22	50800079	rs189353060	G	A	100	PASS	AA=G;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-3.34,-5	0|0:0:-0,-3.59,-5	0|0:0:-0.02,-1.28,-5	0|0:0:-0,-4,-5
22	50800546	rs143237891	T	C	100	PASS	AC=12;ERATE=0.0004;RSQ=0.8728;THETA=0.0004;AA=T;AN=2184;VT=SNP;LDAF=0.0063;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.01;ASN_AF=0.02;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0,-2.06,-5	0|0:0:-0.01,-1.54,-5	0|0:0:-0,-2,-5	0|0:0:-0.11,-0.65,-4.7
22	50801334	rs28627610	A	G	100	PASS	AC=2129;ERATE=0.0004;LDAF=0.9748;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9816;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AF=0.97;ASN_AF=1;AMR_AF=0.97;AFR_AF=1;EUR_AF=0.94	GT:DS:GL	0|1:1:-2.3,-0.01,-1.71	1|0:1:-5,-0,-3.47	1|1:2:-5,-3.74,-0	1|1:2:-5,-1.19,-0.03	1|1:2:-5,-1.58,-0.01
22	50802642	rs73188931	T	C	100	PASS	ERATE=0.0005;AVGPOST=0.9945;AA=T;AN=2184;RSQ=0.9087;VT=SNP;SNPSOURCE=LOWCOV;AC=50;THETA=0.0007;LDAF=0.0244;AF=0.02;AMR_AF=0.03;EUR_AF=0.05	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-2.05,-5	0|0:0:-0,-2.41,-5	1|0:1:-4.1,-0,-3.49	0|0:0:-0,-2.08,-5
22	50802762	rs116421493	T	C	100	PASS	AC=7;LDAF=0.0033;THETA=0.0004;AA=T;AN=2184;RSQ=0.9612;AVGPOST=0.9997;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0032;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.8,-5	0|0:0:-0,-3.36,-5	0|0:0:-0,-2.13,-5	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-3.92,-5
22	50803458	rs28482133	T	C	100	PASS	AC=1020;AA=C;AN=2184;THETA=0.0008;VT=SNP;RSQ=0.9948;AVGPOST=0.9969;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.4665;AF=0.47;ASN_AF=0.43;AMR_AF=0.4;AFR_AF=0.67;EUR_AF=0.39	GT:DS:GL	0|1:1:-5,-0,-4.7	1|0:1:-5,0,-5	1|1:2:-5,-3.36,-0	0|0:0:-0.18,-0.47,-2.49	1|0:1:-5,-0,-4.4
22	50803564	rs149602991	A	C	100	PASS	ERATE=0.0005;AVGPOST=0.9986;LDAF=0.0276;AN=2184;VT=SNP;THETA=0.0006;AA=A;AC=59;SNPSOURCE=LOWCOV;RSQ=0.9743;AF=0.03;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.04;EUR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.06,-5	0|0:0:-0.19,-0.45,-2.19	0|0:0:-0.03,-1.15,-5	0|0:0:-0.18,-0.48,-2.19	0|0:0:-0.07,-0.81,-5
22	50804163	rs59277654	TA	T	460	PASS	THETA=0.0004;AN=2184;VT=INDEL;LDAF=0.344;ERATE=0.0125;AVGPOST=0.9209;AC=741;RSQ=0.8855;AF=0.34;ASN_AF=0.24;AMR_AF=0.32;AFR_AF=0.59;EUR_AF=0.26	GT:DS:GL	0|0:0:0,-0.6,-8.6	1|0:0.6:0,0,0	1|1:1.65:-12.7,-1,0	0|0:0:0,-0.9,-12.6	0|0:0:0,-1.8,-24.8
22	50804774	rs188710755	C	T	100	PASS	AA=C;THETA=0.0004;LDAF=0.0042;AN=2184;ERATE=0.0009;AVGPOST=0.9934;VT=SNP;SNPSOURCE=LOWCOV;AC=4;RSQ=0.3806;AF=0.0018;AMR_AF=0.0028;AFR_AF=0.0041;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.36,-0.44,-0.7	0|0:0:-0.09,-0.72,-4.7	0|0:0:-0.06,-0.91,-5
22	50805341	.	C	CT	253	PASS	LDAF=0.45;AN=2184;ERATE=0.0034;VT=INDEL;AVGPOST=0.9569;AC=998;RSQ=0.9396;THETA=0.0019;AF=0.46;ASN_AF=0.43;AMR_AF=0.4;AFR_AF=0.65;EUR_AF=0.39	GT:DS:GL	0|1:0.95:-0.6,0,-2.5	0|0:0.45:0,-0.6,-6.1	1|1:1.95:-1.4,-0.3,0	0|0:0:0,-0.3,-3.1	1|0:1:0,-0.3,-3.1
22	50806298	rs187497873	G	A	100	PASS	ERATE=0.0005;RSQ=0.8224;AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=3;LDAF=0.0017;AF=0.0014;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.13,-0.58,-3.55	0|0:0:-0.15,-0.52,-2.97	0|0:0:-0.2,-0.45,-2.2	0|0:0:-0.19,-0.45,-2.11
22	50806512	rs191658942	A	T	100	PASS	AVGPOST=0.9985;LDAF=0.0041;AN=2184;AC=8;VT=SNP;THETA=0.0018;RSQ=0.8398;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;AMR_AF=0.0028;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.7,-5	0|0:0:-0,-3.1,-5	0|0:0:-0,-2.72,-5	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-2.76,-5
22	50806735	rs12163472	C	T	100	PASS	THETA=0.0009;AA=C;AVGPOST=0.9902;AN=2184;RSQ=0.9287;VT=SNP;LDAF=0.0504;SNPSOURCE=LOWCOV;AC=109;ERATE=0.0003;AF=0.05;ASN_AF=0.19;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.16,-0.51,-2.87	0|0:0:-0.12,-0.63,-4	0|0:0:-0.21,-0.43,-1.85	0|0:0:-0.11,-0.67,-4.7	0|0:0:-0.48,-0.48,-0.48
22	50808773	rs187089990	A	G	100	PASS	ERATE=0.0005;AVGPOST=0.9985;AN=2184;THETA=0.0038;LDAF=0.0057;VT=SNP;RSQ=0.8834;AA=A;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.13,-0.59,-3.7	0|0:0:-0.04,-1.04,-5	0|0:0:-0.2,-0.44,-2.11	0|0:0:-0.07,-0.82,-5
22	50808773	rs187089990	A	G	100	PASS	ERATE=0.0005;AVGPOST=0.9985;AN=2184;THETA=0.0038;LDAF=0.0057;VT=SNP;RSQ=0.8834;AA=A;SNPSOURCE=LOWCOV;AC=11;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.13,-0.59,-3.7	0|0:0:-0.04,-1.04,-5	0|0:0:-0.2,-0.44,-2.11	0|0:0:-0.07,-0.82,-5
22	50808773	MERGED_DEL_2_107185	ATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGGAGATGGGATTACAGGCGCCTGCCACCACGCCCAGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGACTGGTCTCGAATGCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCACGCTATGTTTTAAAGAAAAAAGTTTAAAAGTAGGACCTATTTCTTTTTTTCTTTTCATTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCATTGTGCCTCGCTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAATCTTGAACTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCACTGCCCCCAGCCACAAATGTAGGACCTATTTCTAAGAAACCCTTTGTAGAGGTCAGGGTATTGGGAATCCTAATTTAAAAATATTTTTAATCATTATTGGAAATTTAAGTGACAGTGGGTTCAAGAGCTAAACGTCAGACCTTTTTTAAAACAAATTTTATTTTCTGAAGGACTTCATACCTGACAACGCCAATTAAACATAATACTCCACCCATCCTACAAATTATTAAATACATTATTTCACCTGGGACTAGGATAATTATAAAATGGAATTTTAAAGTTGTAATATAGCCAGGCACAGTGGTTTGTGCTTGTAATTCCTGCTACTCAGCAGGCTGTGGCAGGAGGATCACTTGAGGGCTGTAATGTGCTGTGTGAACTGGGTGTCTGCACTAAGTTCGGCATCAGTATGGTGACCTCCCAGAAAAGGAAGACTGCCAGGTTGCCTAAGGAGGTGTGAACCAGCTGAGGTTGGAAATGGAGCACATCAGAAACTCCCATGCTGGTTAGTAGTGGGACTGGAGCTGTGAATAGCTACTGCTCTCCACCCTGGGCAGCATAGTGAGACCCCATCTCTTTAAAAAAGAAAAAAAAAAGAAAACTATCTTAAAATATCATTTTAACTGTCATGTTTGCTAGTTGAATTATGAAATCAAAGACAAATTTTATATTTAAGGGACAGATAATAAATGCTGTTCCATTGCTTTATTTTTAAAATTTTGTAATTGCTTTTTTTTGAGATGGGGTCAGTCTCTGGTCACCCAGGCTGGAGTGCAG	A	.	.	HOMSEQ=TGGC;AN=2184;RSQ=0.545;CIPOS=-141,19;AVGPOST=0.9869;LDAF=0.0109;THETA=0.0006;AC=14;HOMLEN=4;END=50810125;SVLEN=-1352;CIEND=-113,40;VT=SV;ERATE=0.002;SVTYPE=DEL;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.82,-31.53	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:-0.01,-1.47,-22	0|0:0:0,0,0
22	50808773	MERGED_DEL_2_107185	ATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGGAGATGGGATTACAGGCGCCTGCCACCACGCCCAGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGACTGGTCTCGAATGCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCACGCTATGTTTTAAAGAAAAAAGTTTAAAAGTAGGACCTATTTCTTTTTTTCTTTTCATTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCATTGTGCCTCGCTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAATCTTGAACTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCACTGCCCCCAGCCACAAATGTAGGACCTATTTCTAAGAAACCCTTTGTAGAGGTCAGGGTATTGGGAATCCTAATTTAAAAATATTTTTAATCATTATTGGAAATTTAAGTGACAGTGGGTTCAAGAGCTAAACGTCAGACCTTTTTTAAAACAAATTTTATTTTCTGAAGGACTTCATACCTGACAACGCCAATTAAACATAATACTCCACCCATCCTACAAATTATTAAATACATTATTTCACCTGGGACTAGGATAATTATAAAATGGAATTTTAAAGTTGTAATATAGCCAGGCACAGTGGTTTGTGCTTGTAATTCCTGCTACTCAGCAGGCTGTGGCAGGAGGATCACTTGAGGGCTGTAATGTGCTGTGTGAACTGGGTGTCTGCACTAAGTTCGGCATCAGTATGGTGACCTCCCAGAAAAGGAAGACTGCCAGGTTGCCTAAGGAGGTGTGAACCAGCTGAGGTTGGAAATGGAGCACATCAGAAACTCCCATGCTGGTTAGTAGTGGGACTGGAGCTGTGAATAGCTACTGCTCTCCACCCTGGGCAGCATAGTGAGACCCCATCTCTTTAAAAAAGAAAAAAAAAAGAAAACTATCTTAAAATATCATTTTAACTGTCATGTTTGCTAGTTGAATTATGAAATCAAAGACAAATTTTATATTTAAGGGACAGATAATAAATGCTGTTCCATTGCTTTATTTTTAAAATTTTGTAATTGCTTTTTTTTGAGATGGGGTCAGTCTCTGGTCACCCAGGCTGGAGTGCAG	A	.	.	HOMSEQ=TGGC;AN=2184;RSQ=0.545;CIPOS=-141,19;AVGPOST=0.9869;LDAF=0.0109;THETA=0.0006;AC=14;HOMLEN=4;END=50810125;SVLEN=-1352;CIEND=-113,40;VT=SV;ERATE=0.002;SVTYPE=DEL;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.82,-31.53	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:-0.01,-1.47,-22	0|0:0:0,0,0
22	50808773	MERGED_DEL_2_107185	ATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGGAGATGGGATTACAGGCGCCTGCCACCACGCCCAGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGACTGGTCTCGAATGCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCACGCTATGTTTTAAAGAAAAAAGTTTAAAAGTAGGACCTATTTCTTTTTTTCTTTTCATTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCATTGTGCCTCGCTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAATCTTGAACTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCACTGCCCCCAGCCACAAATGTAGGACCTATTTCTAAGAAACCCTTTGTAGAGGTCAGGGTATTGGGAATCCTAATTTAAAAATATTTTTAATCATTATTGGAAATTTAAGTGACAGTGGGTTCAAGAGCTAAACGTCAGACCTTTTTTAAAACAAATTTTATTTTCTGAAGGACTTCATACCTGACAACGCCAATTAAACATAATACTCCACCCATCCTACAAATTATTAAATACATTATTTCACCTGGGACTAGGATAATTATAAAATGGAATTTTAAAGTTGTAATATAGCCAGGCACAGTGGTTTGTGCTTGTAATTCCTGCTACTCAGCAGGCTGTGGCAGGAGGATCACTTGAGGGCTGTAATGTGCTGTGTGAACTGGGTGTCTGCACTAAGTTCGGCATCAGTATGGTGACCTCCCAGAAAAGGAAGACTGCCAGGTTGCCTAAGGAGGTGTGAACCAGCTGAGGTTGGAAATGGAGCACATCAGAAACTCCCATGCTGGTTAGTAGTGGGACTGGAGCTGTGAATAGCTACTGCTCTCCACCCTGGGCAGCATAGTGAGACCCCATCTCTTTAAAAAAGAAAAAAAAAAGAAAACTATCTTAAAATATCATTTTAACTGTCATGTTTGCTAGTTGAATTATGAAATCAAAGACAAATTTTATATTTAAGGGACAGATAATAAATGCTGTTCCATTGCTTTATTTTTAAAATTTTGTAATTGCTTTTTTTTGAGATGGGGTCAGTCTCTGGTCACCCAGGCTGGAGTGCAG	A	.	.	HOMSEQ=TGGC;AN=2184;RSQ=0.545;CIPOS=-141,19;AVGPOST=0.9869;LDAF=0.0109;THETA=0.0006;AC=14;HOMLEN=4;END=50810125;SVLEN=-1352;CIEND=-113,40;VT=SV;ERATE=0.002;SVTYPE=DEL;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.82,-31.53	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:-0.01,-1.47,-22	0|0:0:0,0,0
22	50808773	MERGED_DEL_2_107185	ATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGGAGATGGGATTACAGGCGCCTGCCACCACGCCCAGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGACTGGTCTCGAATGCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCACGCTATGTTTTAAAGAAAAAAGTTTAAAAGTAGGACCTATTTCTTTTTTTCTTTTCATTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCATTGTGCCTCGCTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAATCTTGAACTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCACTGCCCCCAGCCACAAATGTAGGACCTATTTCTAAGAAACCCTTTGTAGAGGTCAGGGTATTGGGAATCCTAATTTAAAAATATTTTTAATCATTATTGGAAATTTAAGTGACAGTGGGTTCAAGAGCTAAACGTCAGACCTTTTTTAAAACAAATTTTATTTTCTGAAGGACTTCATACCTGACAACGCCAATTAAACATAATACTCCACCCATCCTACAAATTATTAAATACATTATTTCACCTGGGACTAGGATAATTATAAAATGGAATTTTAAAGTTGTAATATAGCCAGGCACAGTGGTTTGTGCTTGTAATTCCTGCTACTCAGCAGGCTGTGGCAGGAGGATCACTTGAGGGCTGTAATGTGCTGTGTGAACTGGGTGTCTGCACTAAGTTCGGCATCAGTATGGTGACCTCCCAGAAAAGGAAGACTGCCAGGTTGCCTAAGGAGGTGTGAACCAGCTGAGGTTGGAAATGGAGCACATCAGAAACTCCCATGCTGGTTAGTAGTGGGACTGGAGCTGTGAATAGCTACTGCTCTCCACCCTGGGCAGCATAGTGAGACCCCATCTCTTTAAAAAAGAAAAAAAAAAGAAAACTATCTTAAAATATCATTTTAACTGTCATGTTTGCTAGTTGAATTATGAAATCAAAGACAAATTTTATATTTAAGGGACAGATAATAAATGCTGTTCCATTGCTTTATTTTTAAAATTTTGTAATTGCTTTTTTTTGAGATGGGGTCAGTCTCTGGTCACCCAGGCTGGAGTGCAG	A	.	.	HOMSEQ=TGGC;AN=2184;RSQ=0.545;CIPOS=-141,19;AVGPOST=0.9869;LDAF=0.0109;THETA=0.0006;AC=14;HOMLEN=4;END=50810125;SVLEN=-1352;CIEND=-113,40;VT=SV;ERATE=0.002;SVTYPE=DEL;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.82,-31.53	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:-0.01,-1.47,-22	0|0:0:0,0,0
22	50808773	MERGED_DEL_2_107185	ATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGGAGATGGGATTACAGGCGCCTGCCACCACGCCCAGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGACTGGTCTCGAATGCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCACGCTATGTTTTAAAGAAAAAAGTTTAAAAGTAGGACCTATTTCTTTTTTTCTTTTCATTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCATTGTGCCTCGCTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTAATCTTGAACTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCACTGCCCCCAGCCACAAATGTAGGACCTATTTCTAAGAAACCCTTTGTAGAGGTCAGGGTATTGGGAATCCTAATTTAAAAATATTTTTAATCATTATTGGAAATTTAAGTGACAGTGGGTTCAAGAGCTAAACGTCAGACCTTTTTTAAAACAAATTTTATTTTCTGAAGGACTTCATACCTGACAACGCCAATTAAACATAATACTCCACCCATCCTACAAATTATTAAATACATTATTTCACCTGGGACTAGGATAATTATAAAATGGAATTTTAAAGTTGTAATATAGCCAGGCACAGTGGTTTGTGCTTGTAATTCCTGCTACTCAGCAGGCTGTGGCAGGAGGATCACTTGAGGGCTGTAATGTGCTGTGTGAACTGGGTGTCTGCACTAAGTTCGGCATCAGTATGGTGACCTCCCAGAAAAGGAAGACTGCCAGGTTGCCTAAGGAGGTGTGAACCAGCTGAGGTTGGAAATGGAGCACATCAGAAACTCCCATGCTGGTTAGTAGTGGGACTGGAGCTGTGAATAGCTACTGCTCTCCACCCTGGGCAGCATAGTGAGACCCCATCTCTTTAAAAAAGAAAAAAAAAAGAAAACTATCTTAAAATATCATTTTAACTGTCATGTTTGCTAGTTGAATTATGAAATCAAAGACAAATTTTATATTTAAGGGACAGATAATAAATGCTGTTCCATTGCTTTATTTTTAAAATTTTGTAATTGCTTTTTTTTGAGATGGGGTCAGTCTCTGGTCACCCAGGCTGGAGTGCAG	A	.	.	HOMSEQ=TGGC;AN=2184;RSQ=0.545;CIPOS=-141,19;AVGPOST=0.9869;LDAF=0.0109;THETA=0.0006;AC=14;HOMLEN=4;END=50810125;SVLEN=-1352;CIEND=-113,40;VT=SV;ERATE=0.002;SVTYPE=DEL;AF=0.01;ASN_AF=0.0035;AFR_AF=0.02;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.82,-31.53	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:-0.01,-1.47,-22	0|0:0:0,0,0
22	50808864	rs188024331	C	A	100	PASS	ERATE=0.0005;AA=C;AN=2184;LDAF=0.0032;AC=6;VT=SNP;THETA=0.0028;AVGPOST=0.9971;RSQ=0.6194;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.18,-0.47,-2.33	0|0:0:-0.11,-0.64,-3.09	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.22,-0.43,-1.78
22	50809364	.	AATGT	A	378	PASS	AN=2184;AVGPOST=0.9934;VT=INDEL;THETA=0.0028;LDAF=0.0629;AC=138;RSQ=0.9606;ERATE=0.0007;AF=0.06;AMR_AF=0.02;AFR_AF=0.24;EUR_AF=0.02	GT:DS:GL	0|0:0:0,-1.8,-50.4	0|0:0:0,-0.6,-12.4	0|0:0:0,-1.2,-31.1	0|0:0:0,-0.6,-16.8	0|0:0:0,-0.3,-8.4
22	50810102	rs145171819	C	T	100	PASS	ERATE=0.0004;RSQ=0.5707;LDAF=0.0013;AA=C;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;THETA=0.0013;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.01,-1.57,-5	0|0:0:-0.08,-0.78,-5	0|0:0:-0.18,-0.48,-2.2	0|0:0:-0.2,-0.44,-1.99
22	50810679	rs73188939	C	T	100	PASS	AA=C;AC=293;LDAF=0.1349;AN=2184;AVGPOST=0.9975;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9921;THETA=0.0003;AF=0.13;ASN_AF=0.03;AMR_AF=0.15;AFR_AF=0.12;EUR_AF=0.21	GT:DS:GL	0|1:1:-5,-1.16,-0.03	1|0:1:-1.62,-0.01,-5	1|0:1:-3.7,-0,-5	0|0:0:-0.02,-1.45,-5	1|0:1:-2.44,-0,-2.27
22	50812724	rs114824019	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;AC=49;LDAF=0.0239;VT=SNP;AVGPOST=0.9959;SNPSOURCE=LOWCOV;THETA=0.0003;RSQ=0.9402;AF=0.02;AMR_AF=0.01;AFR_AF=0.09	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.08,-0.8,-5	0|0:0:-0.13,-0.59,-3.62	0|0:0.3:-0.09,-0.73,-4.7	0|0:0:-0.04,-1.07,-5
22	50814075	rs8142229	C	T	100	PASS	ERATE=0.0004;LDAF=0.2829;AA=T;AN=2184;AC=618;THETA=0.0008;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;RSQ=0.9985;AF=0.28;ASN_AF=0.21;AMR_AF=0.23;AFR_AF=0.43;EUR_AF=0.27	GT:DS:GL	0|1:1:-5,-0.01,-1.77	1|0:1:-5,0,-5	1|0:1:-3.3,-0,-5	0|0:0:-0.02,-1.43,-5	1|0:1:-5,-0.07,-0.81
22	50814254	rs182008719	C	T	100	PASS	ERATE=0.0004;AA=C;LDAF=0.0035;THETA=0.0004;RSQ=0.5377;AN=2184;VT=SNP;AVGPOST=0.9954;SNPSOURCE=LOWCOV;AC=4;AF=0.0018;AFR_AF=0.0041;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.04,-1.06,-5	0|0:0:-0.44,-0.46,-0.54	0|0:0:-0.11,-0.64,-4	0|0:0:-0.1,-0.68,-4.7
22	50815104	rs73188943	C	T	100	PASS	ERATE=0.0005;RSQ=0.9892;AVGPOST=0.9963;AA=C;AN=2184;THETA=0.004;VT=SNP;AC=348;SNPSOURCE=LOWCOV;LDAF=0.1607;AF=0.16;ASN_AF=0.08;AMR_AF=0.17;AFR_AF=0.15;EUR_AF=0.22	GT:DS:GL	0|1:1:-5,0,-5	1|0:1:-1.47,-0.01,-5	1|0:1:-5,-0.01,-1.62	0|0:0:-0.11,-0.66,-4.22	1|0:0.95:-0.12,-0.62,-3.85
22	50815574	rs147410128	A	G	100	PASS	AVGPOST=0.9985;THETA=0.0004;AN=2184;VT=SNP;LDAF=0.0026;AA=A;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.7958;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0,-2.38,-5	0|0:0:-0,-2.1,-5	0|0:0:-0,-2.33,-5	0|0:0:-0,-4.7,-5
22	50816305	rs6520143	A	G	100	PASS	AC=614;THETA=0.0009;ERATE=0.0005;AN=2184;LDAF=0.2803;AVGPOST=0.9975;VT=SNP;SNPSOURCE=LOWCOV;AA=a;RSQ=0.995;AF=0.28;ASN_AF=0.21;AMR_AF=0.23;AFR_AF=0.42;EUR_AF=0.27	GT:DS:GL	0|1:1:-5,-1.12,-0.03	1|0:1:-0.19,-0.45,-2.21	1|0:0.9:-0.03,-1.16,-5	0|0:0:-0.1,-0.68,-4.4	1|0:1:-5,-0.03,-1.17
22	50816307	rs117122251	G	A	100	PASS	ERATE=0.0004;LDAF=0.0086;AA=G;AN=2184;AVGPOST=0.9952;AC=16;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.7914;AF=0.01;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.17,-5	0|0:0:-0.2,-0.44,-2.02	0|0:0:-0.03,-1.13,-5	0|0:0:-0.1,-0.69,-4.4	0|0:0:-0.07,-0.83,-5
22	50816619	rs7511047	A	G	100	PASS	ERATE=0.0005;AA=G;AN=2184;LDAF=0.308;THETA=0.0005;VT=SNP;RSQ=0.9923;AVGPOST=0.9959;AC=673;SNPSOURCE=LOWCOV;AF=0.31;ASN_AF=0.21;AMR_AF=0.29;AFR_AF=0.42;EUR_AF=0.32	GT:DS:GL	0|1:1:-4.7,-0,-3.27	1|0:1:-0.91,-0.06,-5	1|0:0.95:-0.79,-0.08,-5	0|1:0.8:-0.05,-0.94,-5	1|1:2:-5,-2.11,-0
22	50816631	rs75998831	A	G	100	PASS	AC=105;AN=2184;VT=SNP;AA=A;RSQ=0.9956;LDAF=0.0482;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.05;AMR_AF=0.02;AFR_AF=0.2	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0,-2.37,-5	0|0:0:-0,-3.14,-5	0|0:0:-0.03,-1.22,-5	0|0:0:-0,-4.4,-5
22	50817006	rs111817105	A	ACTCT	882	PASS	RSQ=0.9813;AVGPOST=0.9902;AN=2184;ERATE=0.0009;VT=INDEL;THETA=0.0005;LDAF=0.2753;AC=604;AF=0.28;ASN_AF=0.2;AMR_AF=0.23;AFR_AF=0.42;EUR_AF=0.27	GT:DS:GL	0|1:1:-30.6,0,-4.1	1|0:1:0,0,0	1|0:0.85:0,-0.6,-11	0|0:0:0,-0.9,-16.8	1|0:1:-8,-0.3,0
22	50817116	rs116264025	C	G	100	PASS	ERATE=0.0005;AA=C;RSQ=0.9017;THETA=0.0004;AN=2184;VT=SNP;AC=9;AVGPOST=0.9991;LDAF=0.0044;SNPSOURCE=LOWCOV;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0.1:-0.12,-0.62,-3.19	0|0:0:-0.04,-1.05,-5	0|0:0:-0.11,-0.66,-4.22	0|0:0:-0.07,-0.85,-5
22	50817675	rs188336273	A	G	100	PASS	THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.6409;LDAF=0.0014;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AC=2;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.69,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.02,-1.33,-5	0|0:0:-0.01,-1.73,-5	0|0:0:-0.01,-1.6,-5
22	50817702	rs192411869	A	T	100	PASS	ERATE=0.0005;AVGPOST=0.9994;AN=2184;RSQ=0.7632;VT=SNP;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2.35,-5	0|0:0:-0.01,-1.55,-5	0|0:0:-0,-2.07,-5	0|0:0:-0.02,-1.46,-5	0|0:0:-0.01,-1.84,-5
22	50818084	rs117865134	G	C	100	PASS	RSQ=0.9881;AA=G;AN=2184;VT=SNP;AC=51;AVGPOST=0.9993;THETA=0.0017;LDAF=0.0235;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0,-2.19,-5	0|0:0:-0.07,-0.81,-5	0|0:0:-0.01,-1.73,-5	0|0:0:-0.01,-1.59,-5
22	50819164	rs113578696	A	G	100	PASS	RSQ=0.4936;AN=2184;LDAF=0.0159;THETA=0.0005;VT=SNP;AA=A;AVGPOST=0.9796;SNPSOURCE=LOWCOV;ERATE=0.0012;AC=19;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0.05:-0.12,-0.61,-3.18	0|0:0:-0.07,-0.85,-5	0|0:0:-0.19,-0.46,-2.4	0|0:0.05:-0.48,-0.48,-0.48
22	50819817	rs191385533	T	C	100	PASS	AC=205;AVGPOST=0.7518;AA=T;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.1824;RSQ=0.3191;SNPSOURCE=LOWCOV;ERATE=0.0228;AF=0.09;ASN_AF=0.05;AMR_AF=0.08;AFR_AF=0.12;EUR_AF=0.12	GT:DS:GL	0|0:0.2:-0.19,-0.46,-2.31	0|0:0.45:-0.48,-0.48,-0.48	0|0:0.25:-0.26,-0.4,-1.31	0|0:0.2:-0.48,-0.48,-0.48	0|0:0.6:-0.48,-0.48,-0.48
22	50820076	rs55791675	G	A	100	PASS	AVGPOST=0.9564;AA=g;THETA=0.0004;LDAF=0.2714;AN=2184;RSQ=0.9229;VT=SNP;AC=597;ERATE=0.0016;SNPSOURCE=LOWCOV;AF=0.27;ASN_AF=0.19;AMR_AF=0.22;AFR_AF=0.47;EUR_AF=0.24	GT:DS:GL	0|1:1:-5,-0.66,-0.11	1|0:1:-0.48,-0.48,-0.48	1|0:0.8:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0.3:-0.12,-0.63,-3.92
22	50820081	rs188532206	G	T	100	PASS	AA=G;AN=2184;VT=SNP;AC=9;LDAF=0.0056;ERATE=0.0008;THETA=0.0012;RSQ=0.6635;SNPSOURCE=LOWCOV;AVGPOST=0.9951;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0.19,-0.45,-2.17	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.04,-1.02,-5
22	50820761	rs7289089	C	T	100	PASS	ERATE=0.0005;LDAF=0.0234;AA=C;AN=2184;AVGPOST=0.9962;THETA=0.0005;VT=SNP;RSQ=0.937;SNPSOURCE=LOWCOV;AC=53;AF=0.02;AMR_AF=0.01;AFR_AF=0.1	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.12,-0.63,-4	0|0:0:-0.12,-0.63,-4	0|0:0:-0.05,-0.93,-5	0|0:0:-0.18,-0.47,-3.09
22	50821579	rs6520146	G	T	100	PASS	AC=2032;ERATE=0.0004;AVGPOST=0.99;AA=T;AN=2184;RSQ=0.9442;LDAF=0.9287;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001;AF=0.93;ASN_AF=1;AMR_AF=0.91;AFR_AF=0.98;EUR_AF=0.86	GT:DS:GL	0|1:1:-2.03,-0,-3.74	1|0:1:-4.4,-0,-3.74	1|1:2:-5,-2.74,-0	1|1:2:-5,-1.4,-0.02	1|1:2:-5,-0.15,-0.53
22	50823444	rs75091994	C	T	100	PASS	AC=12;AA=C;LDAF=0.0058;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9566;AVGPOST=0.9995;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.5,-5	0|0:0:-0,-2.3,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0,-2.64,-5
22	50825833	rs149533135	T	A	100	PASS	THETA=0.0004;AA=T;AN=2184;AC=8;VT=SNP;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.946;AF=0.0037;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.37,-5	0|0:0:-0,-2.89,-5	0|0:0:-0,-4.7,-5	0|0:0:-0.02,-1.44,-5	0|0:0:-0,-2.66,-5
22	50827941	rs181430853	T	C	100	PASS	LDAF=0.0004;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;AVGPOST=0.9995;RSQ=0.5449;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2.91,-5	0|0:0:-0,-2.87,-5	0|0:0:-0,-2.35,-5	0|0:0:-0.01,-1.51,-5	0|0:0:-0,-2.13,-5
22	50828021	rs149843813	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;AC=40;AVGPOST=0.9972;VT=SNP;THETA=0.0011;LDAF=0.0189;RSQ=0.9396;SNPSOURCE=LOWCOV;AF=0.02;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.06,-0.87,-5	0|0:0:-0.32,-0.43,-0.83	0|0:0:-0.05,-0.98,-5	0|0:0:-0.14,-0.56,-2.97	0|0:0:-0.21,-0.43,-1.89
22	50828639	rs184455757	T	G	100	PASS	THETA=0.0021;AA=T;AN=2184;AC=16;VT=SNP;AVGPOST=0.9964;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8327;LDAF=0.008;AF=0.01;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.1,-0.69,-4.22	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.18,-0.48,-2.19	0|0:0:-0.48,-0.48,-0.48
22	50829243	rs182321807	C	G	100	PASS	ERATE=0.0005;RSQ=0.3368;AN=2184;VT=SNP;THETA=0.0011;LDAF=0.0019;AA=c;AVGPOST=0.997;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0.15,-0.53,-2.42	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.91,-5	0|0:0:-0.14,-0.56,-3.32
22	50831236	rs117715322	C	T	100	PASS	AA=C;AN=2184;RSQ=0.8744;THETA=0.0005;VT=SNP;AC=24;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.9961;LDAF=0.0129;AF=0.01;ASN_AF=0.04	GT:DS:GL	0|0:0:-0.03,-1.13,-5	0|0:0:-0,-4,-5	0|0:0:-0,-2.69,-5	0|0:0:-0.13,-0.6,-3.32	0|0:0:-0.07,-0.84,-5
22	50832506	.	C	T	100	PASS	AA=C;THETA=0.0014;RSQ=0.8839;AN=2184;AVGPOST=0.9997;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50832799	rs187671173	G	T	100	PASS	RSQ=0.8981;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;LDAF=0.0026;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;ASN_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.01,-1.62,-5	0|0:0:-0,-2.19,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0,-1.94,-5
22	50833816	rs7511085	G	A	100	PASS	THETA=0.0009;AVGPOST=0.9939;LDAF=0.347;AA=G;AN=2184;VT=SNP;AC=757;RSQ=0.9894;SNPSOURCE=LOWCOV;ERATE=0.0007;AF=0.35;ASN_AF=0.37;AMR_AF=0.4;AFR_AF=0.22;EUR_AF=0.38	GT:DS:GL	0|1:1:-4.4,-0,-3.47	1|0:1:-5,-0.01,-1.69	1|1:2:-5,-0.73,-0.09	1|1:2:-5,-1.93,-0.01	1|1:2:-5,-1.55,-0.01
22	50834487	rs189366017	A	G	100	PASS	RSQ=0.4704;AN=2184;AVGPOST=0.9914;AC=6;THETA=0.0005;LDAF=0.0062;VT=SNP;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0012;AF=0.0027;ASN_AF=0.01;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0.12,-0.63,-4.1	0|0:0:-0.08,-0.8,-5	0|0:0:-0.19,-0.46,-2.06	0|0:0:-0.18,-0.47,-3.07
22	50834762	rs144782173	A	G	100	PASS	THETA=0.0032;AN=2184;AC=16;VT=SNP;LDAF=0.0085;SNPSOURCE=LOWCOV;RSQ=0.8715;AVGPOST=0.9968;AA=a;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.02,-1.47,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.24,-0.41,-1.52	0|0:0:-0.06,-0.87,-5	0|0:0:-0.48,-0.48,-0.48
22	50834855	rs73172205	T	C	100	PASS	AVGPOST=0.9735;LDAF=0.1093;AA=T;AN=2184;VT=SNP;AC=227;RSQ=0.91;SNPSOURCE=LOWCOV;ERATE=0.004;THETA=0.0043;AF=0.1;ASN_AF=0.0017;AMR_AF=0.17;AFR_AF=0.02;EUR_AF=0.21	GT:DS:GL	0|1:1:-2.3,-0.01,-1.72	0|0:0:-0.07,-0.81,-5	0|0:0.45:-0.1,-0.69,-4.4	0|1:1:-2.17,-0.02,-1.47	1|1:1.7:-0.23,-0.41,-1.61
22	50835095	rs190838697	C	T	100	PASS	LDAF=0.0021;AA=C;THETA=0.0061;AN=2184;RSQ=0.5823;VT=SNP;AVGPOST=0.9976;ERATE=0.0008;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0017;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0,-2.05,-5	0|0:0:-0,-2.59,-5	0|0:0:-0,-2.25,-5	0|0:0:-0.01,-1.73,-5	0|0:0:-0.01,-1.84,-5
22	50837789	rs184830612	A	G	100	PASS	RSQ=0.6188;THETA=0.0004;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.01,-1.79,-5	0|0:0:-0,-2.84,-5	0|0:0:-0,-2.61,-5	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-4.7,-5
22	50837868	rs12163126	C	G	100	PASS	AA=C;AC=387;AN=2184;AVGPOST=0.9981;THETA=0.0008;VT=SNP;LDAF=0.1771;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9955;AF=0.18;ASN_AF=0.41;AMR_AF=0.15;AFR_AF=0.04;EUR_AF=0.1	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0,-3.34,-5	0|1:1:-5,-0.08,-0.77	1|0:1:-5,-0,-3.22	0|0:0:-0,-3.12,-5
22	50838215	rs181724889	T	A	100	PASS	AA=T;AN=2184;LDAF=0.0015;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;THETA=0.001;ERATE=0.0003;RSQ=0.7477;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.01,-1.8,-5	0|0:0:-0,-2.19,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0.48,-0.48,-0.48
22	50838559	rs181423846	G	A	100	PASS	ERATE=0.0004;RSQ=0.8321;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9992;AF=0.0018;AMR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.12,-0.61,-3.06	0|0:0:-0.19,-0.46,-2.42	0|0:0:-0.01,-1.63,-5
22	50839408	rs187304647	C	T	100	PASS	ERATE=0.0004;AA=C;THETA=0.0004;RSQ=0.5967;AN=2184;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;AVGPOST=0.9974;AF=0.0014;AMR_AF=0.0028;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0,-2.13,-5	0|0:0:-0,-2.78,-5	0|0:0:-0.01,-1.87,-5	0|0:0:-0,-3.06,-5
22	50842665	rs187222328	A	G	100	PASS	ERATE=0.0005;AVGPOST=0.9939;LDAF=0.0137;THETA=0.0004;AN=2184;AC=26;VT=SNP;AA=A;RSQ=0.8294;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0.26,-0.44,-1.08	0|0:0:-0.33,-0.43,-0.78	0|0:0:-0.1,-0.68,-4	0|0:0:-0.21,-0.43,-1.85
22	50843925	rs141175264	C	T	100	PASS	AA=C;AC=426;AN=2184;ERATE=0.0009;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.946;AVGPOST=0.9777;LDAF=0.189;AF=0.2;ASN_AF=0.24;AMR_AF=0.24;AFR_AF=0.08;EUR_AF=0.22	GT:DS:GL	0|0:0:-0.02,-1.41,-5	0|0:0:-0.24,-0.44,-1.16	0|0:0:-0.15,-0.54,-3.13	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50846041	rs150455028	G	A	100	PASS	RSQ=0.9813;AA=G;AN=2184;VT=SNP;THETA=0.0006;LDAF=0.0023;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.0023;ASN_AF=0.0017;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0,-3.8,-5	0|0:0:0,-5,-5	0|0:0:-0.02,-1.45,-5	0|0:0:-0,-2.62,-5
22	50846930	rs181569258	C	T	100	PASS	THETA=0.0009;ERATE=0.0004;RSQ=0.6902;AA=C;LDAF=0.0016;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9987;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.15,-0.53,-3.27	0|0:0:-0.04,-1.04,-5	0|0:0:-0.14,-0.57,-2.02	0|0:0:-0.06,-0.9,-5	0|0:0:-0.04,-1.1,-5
22	50847279	rs77332739	C	T	100	PASS	AA=C;AN=2184;RSQ=0.9851;AVGPOST=0.9944;THETA=0.0005;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;AC=375;LDAF=0.1717;AF=0.17;ASN_AF=0.41;AMR_AF=0.15;AFR_AF=0.01;EUR_AF=0.1	GT:DS:GL	0|0:0:-0,-2.94,-5	0|0:0:-0.2,-0.44,-2.03	0|1:1:-4.7,-0.04,-1.07	1|0:0.95:-0.09,-0.73,-4.4	0|0:0:-0.48,-0.48,-0.48
22	50847734	rs146830845	C	T	100	PASS	THETA=0.0004;AN=2184;AC=8;RSQ=0.9605;AVGPOST=0.9997;VT=SNP;AA=c;LDAF=0.0038;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0037;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.1,-5	0|0:0:-0.12,-0.62,-4.1	0|0:0:-0,-3.66,-5
22	50849112	rs181979033	A	G	100	PASS	AC=7;ERATE=0.0005;THETA=0.0004;AN=2184;RSQ=0.785;VT=SNP;SNPSOURCE=LOWCOV;AA=a;AVGPOST=0.9974;LDAF=0.0045;AF=0.0032;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.11,-0.64,-4.1	0|0:0:-0.02,-1.45,-5	0|0:0:-0.11,-0.64,-4.1
22	50849528	rs141916233	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9611;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.005;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.01,-1.56,-5	0|0:0:-0.01,-1.53,-5	0|0:0:-0.04,-1.01,-5	0|0:0:-0.06,-0.87,-5
22	50850043	rs138555688	C	T	100	PASS	ERATE=0.0004;AC=35;AA=C;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;RSQ=0.9743;LDAF=0.0164;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.06	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0.05:-0.1,-0.68,-4.1	0|0:0:-0.24,-0.41,-1.53	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.16,-0.52,-2.89
22	50850745	rs143561392	C	T	100	PASS	AC=62;ERATE=0.0005;AA=C;LDAF=0.0291;AN=2184;RSQ=0.956;VT=SNP;AVGPOST=0.9969;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.03;ASN_AF=0.08;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.75,-5	0|0:0:-0.01,-1.62,-5	0|0:0:-0.02,-1.28,-5	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.18,-0.47,-3.08
22	50851873	rs116055311	T	C	100	PASS	ERATE=0.0004;AVGPOST=0.9936;AA=T;AN=2184;RSQ=0.9661;VT=SNP;AC=155;LDAF=0.0721;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.07;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.16;EUR_AF=0.07	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0.07,-0.83,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.16,-0.5,-2.53	0|0:0:-0.04,-1.07,-5
22	50852429	rs188345950	G	T	100	PASS	AVGPOST=0.9986;RSQ=0.9026;AA=G;AN=2184;LDAF=0.004;AC=8;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;THETA=0.0003;AF=0.0037;AMR_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.06,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0.01,-1.72,-5	0|0:0:-0.03,-1.13,-5
22	50853952	rs77634136	C	T	100	PASS	AA=C;AC=18;LDAF=0.0083;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9701;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.41,-5	0|0:0:-0.02,-1.46,-5	0|0:0:-0,-2.65,-5	0|0:0:-0.1,-0.68,-4	0|0:0:-0.01,-1.8,-5
22	50854317	rs6520165	T	C	100	PASS	AVGPOST=1;AA=C;THETA=0.0002;RSQ=0.9999;AN=2184;VT=SNP;LDAF=0.4607;AC=1007;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.46;ASN_AF=0.69;AMR_AF=0.43;AFR_AF=0.42;EUR_AF=0.33	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-2.61,-5	0|1:1:-5,-0,-3.07	1|0:1:-2.91,-0,-3.49	0|0:0:0,-5,-5
22	50855445	rs117271753	G	T	100	PASS	ERATE=0.0004;RSQ=0.4577;THETA=0.0004;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;LDAF=0.0008;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.4,-5	0|0:0:-0,-3.32,-5	0|0:0:-0,-3.62,-5	0|0:0:-0.02,-1.34,-5	0|0:0:-0,-2.87,-5
22	50855507	rs181793535	C	T	100	PASS	RSQ=0.878;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0,-2.38,-5	0|0:0:-0,-4.1,-5	0|0:0:0,-5,-5	0|0:0:-0.03,-1.16,-5	0|0:0:-0,-2.36,-5
22	50855542	rs186442105	C	T	100	PASS	AC=7;AVGPOST=1;AA=C;AN=2184;LDAF=0.0032;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9947;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.7,-5	0|0:0:-0.05,-0.96,-5	0|0:0:-0.01,-1.57,-5
22	50858003	rs78116135	C	A	100	PASS	LDAF=0.0004;AA=C;THETA=0.0002;AN=2184;RSQ=0.8999;VT=SNP;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-3.14,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-3.8,-5	0|0:0:0,-5,-5
22	50858918	rs186315709	A	T	100	PASS	THETA=0.0004;AN=2184;VT=SNP;AA=A;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-2.08,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.28,-5	0|0:0:-0.01,-1.88,-5
22	50860077	rs9628257	C	T	100	PASS	AA=C;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.998;AC=14;RSQ=0.8695;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0069;AF=0.01;AMR_AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.06,-0.88,-5	0|0:0:-0.12,-0.61,-3.85	0|0:0:-0.2,-0.44,-2.01	0|0:0:-0.21,-0.42,-1.89	0|0:0.05:-0.48,-0.48,-0.48
22	50860138	rs150704577	G	T	100	PASS	ERATE=0.0004;LDAF=0.0042;AA=G;AN=2184;VT=SNP;RSQ=0.7633;AC=9;SNPSOURCE=LOWCOV;AVGPOST=0.9974;THETA=0.0003;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0.29,-0.43,-0.92	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.11,-0.64,-4.7
22	50860260	rs187094530	G	A	100	PASS	ERATE=0.0004;LDAF=0.0013;THETA=0.0004;AA=G;AN=2184;RSQ=0.4396;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9984;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-2,-5	0|0:0:-0.2,-0.44,-2	0|0:0:-0.13,-0.58,-3.52	0|0:0:-0.11,-0.67,-3.92	0|0:0:-0.1,-0.67,-5
22	50860825	.	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50861601	rs140318909	G	C	100	PASS	LDAF=0.0042;AA=G;AN=2184;THETA=0.0005;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.99;AVGPOST=0.9999;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0.12,-0.63,-3.25	0|0:0:-0.02,-1.28,-5	0|0:0:-0.02,-1.45,-5	0|0:0:-0.01,-1.84,-5
22	50862793	rs61444217	C	A	100	PASS	ERATE=0.0663;AA=C;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.8099;LDAF=0.2548;AC=429;SNPSOURCE=LOWCOV;RSQ=0.538;AF=0.2;ASN_AF=0.25;AMR_AF=0.19;AFR_AF=0.18;EUR_AF=0.17	GT:DS:GL	0|0:0.3:-0.03,-1.14,-5	0|0:0.15:-0.23,-0.41,-1.69	0|1:0.6:-0.3,-0.43,-0.88	0|0:0.4:-0.19,-0.46,-2.01	0|0:0:-0.01,-1.54,-5
22	50863134	rs11091016	T	C	100	PASS	RSQ=0.8786;AA=T;AN=2184;LDAF=0.454;AC=997;THETA=0.0005;VT=SNP;ERATE=0.0112;SNPSOURCE=LOWCOV;AVGPOST=0.9195;AF=0.46;ASN_AF=0.67;AMR_AF=0.42;AFR_AF=0.42;EUR_AF=0.34	GT:DS:GL	0|0:0.05:-0.18,-0.47,-2.38	0|0:0.05:-0.19,-0.45,-2.23	0|1:1.35:-2.67,-0.46,-0.19	1|0:1:-2.26,-0.03,-1.19	0|0:0:-0.18,-0.47,-3.06
22	50863560	rs55902312	C	T	100	PASS	AA=C;AN=2184;AC=46;VT=SNP;LDAF=0.0212;THETA=0.0006;RSQ=0.9477;AVGPOST=0.9964;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.0028;AFR_AF=0.09	GT:DS:GL	0|0:0:-0,-2.36,-5	0|0:0:-0,-3.85,-5	0|0:0:-0,-3.32,-5	0|0:0:-0.03,-1.2,-5	0|0:0:-0.12,-0.63,-3.92
22	50865095	rs5770960	G	C	100	PASS	LDAF=0.7607;AA=C;AC=1662;THETA=0.0004;AN=2184;ERATE=0.0009;VT=SNP;AVGPOST=0.993;SNPSOURCE=LOWCOV;RSQ=0.985;AF=0.76;ASN_AF=0.94;AMR_AF=0.75;AFR_AF=0.71;EUR_AF=0.67	GT:DS:GL	1|0:1:-3.06,-0.46,-0.18	0|1:1:-1.59,-0.01,-2.71	0|1:0.95:-0.15,-0.54,-3.14	1|0:1:-4.4,-0.06,-0.89	0|0:0.05:-0.19,-0.45,-2.13
22	50865416	rs8139455	G	C	100	PASS	ERATE=0.0005;AA=G;AN=2184;RSQ=0.9518;VT=SNP;AC=51;AVGPOST=0.9971;LDAF=0.0229;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.1	GT:DS:GL	0|0:0:-0.02,-1.44,-5	0|0:0:-0.22,-0.42,-1.8	0|0:0:-0.22,-0.42,-1.79	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.14,-0.56,-3.27
22	50865534	rs188855981	T	C	100	PASS	AC=7;ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;RSQ=0.888;VT=SNP;LDAF=0.0038;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.67,-4.4	0|0:0:-0.48,-0.48,-0.48	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0,-2.12,-5	0|0:0:-0.48,-0.48,-0.48
22	50865863	rs2334095	T	A	100	PASS	AN=2184;LDAF=0.4606;THETA=0.0005;VT=SNP;AA=A;AC=1007;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9975;AVGPOST=0.9984;AF=0.46;ASN_AF=0.68;AMR_AF=0.43;AFR_AF=0.42;EUR_AF=0.34	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-3.59,-5	0|1:1:-5,-0.01,-1.52	1|0:1:-4.4,-0,-2.91	0|0:0:-0.04,-1.06,-5
22	50866294	rs181972960	T	A	100	PASS	ERATE=0.0005;LDAF=0.0021;AA=T;AN=2184;THETA=0.0005;VT=SNP;RSQ=0.4334;SNPSOURCE=LOWCOV;AVGPOST=0.9968;AC=3;AF=0.0014;AMR_AF=0.0028;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.76,-5	0|0:0:-0.22,-0.42,-1.83	0|0:0:-0.06,-0.87,-5	0|0:0:-0.1,-0.7,-4.1	0|0:0:-0.48,-0.48,-0.48
22	50866353	rs2334097	A	G	100	PASS	AA=G;AN=2184;AVGPOST=0.8949;VT=SNP;RSQ=0.857;AC=965;SNPSOURCE=LOWCOV;ERATE=0.0176;LDAF=0.4368;THETA=0.0003;AF=0.44;ASN_AF=0.71;AMR_AF=0.41;AFR_AF=0.44;EUR_AF=0.26	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0.09,-0.71,-4.22	0|1:0.95:-0.33,-0.43,-0.79	1|0:1:-2.14,-0.02,-1.47	0|0:0.05:-0.13,-0.6,-3.66
22	50866356	rs2334098	A	G	100	PASS	ERATE=0.0005;THETA=0.0002;LDAF=0.1612;AN=2184;VT=SNP;AA=A;RSQ=0.9321;AVGPOST=0.9737;SNPSOURCE=LOWCOV;AC=366;AF=0.17;ASN_AF=0.4;AMR_AF=0.15;AFR_AF=0.04;EUR_AF=0.08	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.09,-0.71,-4.22	0|1:0.95:-0.46,-0.47,-0.5	1|0:1:-2.16,-0.02,-1.48	0|0:0:-0.13,-0.6,-3.66
22	50866773	rs117231633	T	C	100	PASS	ERATE=0.0004;AC=18;AVGPOST=0.9994;AA=T;AN=2184;RSQ=0.9638;THETA=0.0005;VT=SNP;LDAF=0.0085;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.02;AMR_AF=0.0028;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.01,-1.83,-5	0|0:0:-0,-4.22,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0.03,-1.12,-5
22	50867620	rs145791127	C	T	100	PASS	AN=2184;VT=SNP;AA=c;THETA=0.0006;LDAF=0.0064;ERATE=0.0019;SNPSOURCE=LOWCOV;AVGPOST=0.9929;AC=11;RSQ=0.5559;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.004	GT:DS:GL	0|0:0.05:-0.03,-1.19,-5	0|0:0.15:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.68,-4.1	0|0:0:-0.18,-0.48,-2.18	0|0:0:-0.48,-0.48,-0.48
22	50867817	rs143042707	G	A	100	PASS	ERATE=0.0005;LDAF=0.0013;THETA=0.0002;RSQ=0.6368;AA=G;AN=2184;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0,-3.13,-5	0|0:0:-0,-2.91,-5	0|0:0:-0,-4.22,-5	0|0:0:-0.02,-1.41,-5	0|0:0:-0,-3.04,-5
22	50868527	rs74830978	A	G	100	PASS	ERATE=0.0004;AN=2184;VT=SNP;LDAF=0.0212;AA=A;AC=44;RSQ=0.966;SNPSOURCE=LOWCOV;AVGPOST=0.9978;THETA=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.12,-0.61,-3.21	0|0:0:-0.01,-1.56,-5	0|0:0:-0.01,-1.74,-5	0|0:0:-0.04,-1.07,-5
22	50869692	rs55712763	G	C	100	PASS	THETA=0.0009;RSQ=0.9958;LDAF=0.0202;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;AC=44;AVGPOST=0.9998;ERATE=0.0003;AF=0.02;ASN_AF=0.03;AMR_AF=0.02;AFR_AF=0.01;EUR_AF=0.02	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50869776	rs35376907	G	T	100	PASS	AC=7;AVGPOST=1;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;LDAF=0.0032;VT=SNP;ERATE=0.0003;RSQ=0.9947;AF=0.0032;AMR_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50871100	rs138384597	C	T	100	PASS	ERATE=0.0005;RSQ=0.8821;AA=C;THETA=0.0004;AN=2184;VT=SNP;AC=9;SNPSOURCE=LOWCOV;LDAF=0.0048;AVGPOST=0.9984;AF=0.0041;AMR_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0.01,-1.48,-5	0|0:0:-0.07,-0.84,-5	0|0:0:-0.06,-0.86,-5
22	50873267	rs145881810	C	T	100	PASS	AA=C;LDAF=0.0431;AN=2184;AC=93;THETA=0.0008;VT=SNP;RSQ=0.9275;SNPSOURCE=LOWCOV;ERATE=0.0006;AVGPOST=0.992;AF=0.04;AMR_AF=0.01;AFR_AF=0.18	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.21,-0.46,-1.36	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.91,-5	0|0:0:-0.48,-0.48,-0.48
22	50874573	rs12484005	T	G	100	PASS	RSQ=0.8949;THETA=0.0004;AA=T;AN=2184;AC=13;VT=SNP;LDAF=0.0063;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;AF=0.01;ASN_AF=0.01;AMR_AF=0.0028;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.05,-0.97,-5	0|0:0:-0.26,-0.44,-1.07	0|0:0:-0.36,-0.41,-0.78	0|0:0:-0.19,-0.46,-2.17
22	50874611	rs112817867	G	A	100	PASS	AC=12;ERATE=0.0005;THETA=0.0002;AA=G;AN=2184;RSQ=0.8738;AVGPOST=0.9979;VT=SNP;LDAF=0.0059;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.18,-0.48,-2.47	0|0:0:-0.07,-0.81,-3.44	0|0:0:-0.13,-0.59,-2.85	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0.08,-0.79,-5
22	50874929	rs12484603	C	T	100	PASS	ERATE=0.0004;AA=C;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;LDAF=0.0089;AVGPOST=0.9995;AC=19;THETA=0.0003;AF=0.01;ASN_AF=0.02;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-1.97,-5	0|0:0:-0.01,-1.68,-5	0|0:0:-0.05,-1,-4.7	0|0:0:-0.02,-1.28,-5	0|0:0:-0.02,-1.34,-5
22	50875340	rs191894385	G	T	100	PASS	ERATE=0.0005;THETA=0.0004;AA=G;AN=2184;LDAF=0.0037;AC=6;VT=SNP;AVGPOST=0.9973;SNPSOURCE=LOWCOV;RSQ=0.7309;AF=0.0027;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.73,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.2,-0.44,-2.06	0|0:0:-0.09,-0.72,-4.7	0|0:0:-0.01,-1.69,-5
22	50876156	rs117643240	T	C	100	PASS	THETA=0.0004;RSQ=0.9871;AA=T;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=11;ERATE=0.0003;LDAF=0.0051;AVGPOST=0.9999;AF=0.01;ASN_AF=0.02	GT:DS:GL	0|0:0:-0,-3.52,-5	0|0:0:-0.01,-1.93,-5	0|0:0:-0.13,-0.6,-2.19	0|0:0:-0,-2.74,-5	0|0:0:-0.02,-1.26,-5
22	50876235	rs5770779	T	C	100	PASS	AC=1684;ERATE=0.0069;AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9952;RSQ=0.9896;VT=SNP;LDAF=0.7709;AF=0.77;ASN_AF=0.95;AMR_AF=0.76;AFR_AF=0.62;EUR_AF=0.74	GT:DS:GL	1|1:2:-5,-4.7,-0	0|1:1:-5,0,-5	0|1:1:-5,0,-5	1|0:1:-5,0,-5	0|1:1:-5,0,-5
22	50876243	rs151291667	C	T	100	PASS	RSQ=0.9462;AA=C;THETA=0.0032;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AC=10;ERATE=0.0003;LDAF=0.005;AVGPOST=0.9992;AF=0.0046;AFR_AF=0.0041;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-2.53,-5	0|1:1:-5,0,-5
22	50876708	.	C	T	100	PASS	AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50876770	rs140626666	T	C	100	PASS	LDAF=0.0024;RSQ=0.9469;SNPSOURCE=LOWCOV,EXOME;AN=2184;AVGPOST=0.9997;VT=SNP;AC=5;ERATE=0.0003;AA=t;THETA=0.0003;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.13,-5	0|0:0:-0,-2.56,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50877338	rs147774162	C	T	100	PASS	AA=C;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.7933;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2.15,-5	0|0:0:-0.07,-0.81,-4.22	0|0:0:-0.01,-1.5,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.11,-0.66,-5
22	50878275	rs3197201	A	G	100	PASS	AVGPOST=1;LDAF=0.0151;THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=A;AC=33;RSQ=1;ERATE=0.0003;AF=0.02;ASN_AF=0.06	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50878575	rs188621239	G	A	100	PASS	AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.8271;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-2.48,-5	0|0:0:-0.2,-0.47,-1.44	0|0:0:-0.08,-0.76,-3.74	0|0:0:-0.01,-1.77,-5	0|0:0:-0.01,-1.7,-5
22	50879471	.	C	T	100	PASS	RSQ=0.4436;LDAF=0.0013;AA=C;AVGPOST=0.9983;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;THETA=0.0007;ERATE=0.0006;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2.9,-5	0|0:0:-0.12,-0.61,-2.37	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.01,-1.55,-5	0|0:0:-0,-2.74,-5
22	50880315	rs148549498	A	G	100	PASS	ERATE=0.0005;AN=2184;THETA=0.0005;VT=SNP;AA=A;RSQ=0.4999;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9987;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0.07,-0.82,-4.22	0|0:0:-0.04,-1.03,-5	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0.01,-1.9,-5
22	50880981	rs112917593	T	TTTTG	850	PASS	RSQ=0.8678;AN=2184;AC=1461;VT=INDEL;ERATE=0.0113;AVGPOST=0.9096;LDAF=0.6473;THETA=0.0003;AF=0.67;ASN_AF=0.91;AMR_AF=0.71;AFR_AF=0.41;EUR_AF=0.63	GT:DS:GL	1|0:1:-13.7,0,-7.4	0|0:0.5:0,-0.6,-10.1	0|1:0.85:0,-0.6,-10.1	1|0:1:0,0,0	0|0:0.05:0,-0.6,-9.9
22	50881253	rs113416558	T	C	100	PASS	RSQ=0.9185;AA=T;AN=2184;THETA=0.004;ERATE=0.0024;VT=SNP;AVGPOST=0.9608;LDAF=0.2277;AC=489;SNPSOURCE=LOWCOV;AF=0.22;ASN_AF=0.14;AMR_AF=0.28;AFR_AF=0.17;EUR_AF=0.29	GT:DS:GL	1|0:1:-2.3,-0.01,-1.56	0|1:1:-2.32,-0.04,-1.06	0|0:0:-0.21,-0.43,-1.83	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.14,-0.56,-3.22
22	50881652	rs141473259	A	G	100	PASS	AN=2184;LDAF=0.0043;AVGPOST=0.9996;VT=SNP;RSQ=0.9554;THETA=0.0006;AA=A;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0.01,-1.77,-5	0|0:0:-0,-2.28,-5	0|0:0:-0.05,-0.97,-5	0|0:0:-0.01,-1.59,-5
22	50881738	rs189125762	C	T	100	PASS	ERATE=0.0004;AN=2184;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0012;AC=2;RSQ=0.7802;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.01,-1.54,-5	0|0:0:-0.02,-1.27,-5	0|0:0:-0.04,-1.02,-5	0|0:0:-0.18,-0.46,-2.43	0|0:0.05:-0.1,-0.67,-5
22	50882428	.	G	C	100	PASS	AA=G;AN=2184;VT=SNP;THETA=0.0018;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;RSQ=0.8457;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-2.25,-5	0|0:0:-0,-3.02,-5	0|0:0:-0,-2.64,-5	0|0:0:0,-5,-5	0|0:0:-0.03,-1.2,-5
22	50883998	rs143644134	C	T	100	PASS	AA=C;AVGPOST=0.9994;AN=2184;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;RSQ=0.7474;AC=2;AF=0.0009;AMR_AF=0.0028;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2,-5	0|0:0:-0.01,-1.76,-5	0|0:0:-0,-1.95,-5	0|0:0:-0.06,-0.92,-5	0|0:0:-0.01,-1.62,-5
22	50884298	rs147304351	G	A	100	PASS	THETA=0.0021;ERATE=0.0004;RSQ=0.5878;LDAF=0.0016;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.04,-1.01,-5	0|0:0:-0.12,-0.62,-2.42	0|0:0:-0.04,-1.01,-5	0|0:0:-0,-1.96,-5	0|0:0:-0.11,-0.66,-4.7
22	50885459	rs148435544	G	A	100	PASS	ERATE=0.0014;AA=G;AN=2184;LDAF=0.0148;VT=SNP;AC=15;SNPSOURCE=LOWCOV;THETA=0.001;AVGPOST=0.9793;RSQ=0.4821;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.25,-5	0|0:0:-0.33,-0.43,-0.79	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.04,-1.01,-5	0|0:0:-0.09,-0.71,-4.7
22	50886498	rs192444809	G	C	100	PASS	AVGPOST=1;LDAF=0.0009;RSQ=0.9768;AA=G;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-4.1,-5	0|0:0:-0.02,-1.32,-5	0|0:0:-0,-3.55,-5	0|0:0:-0,-2.45,-5	0|0:0:-0.01,-1.72,-5
22	50886949	rs146468883	C	T	100	PASS	AA=C;AN=2184;AC=8;LDAF=0.0037;VT=SNP;RSQ=0.9175;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0006;AVGPOST=0.9992;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0.01,-1.73,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50887242	rs143259371	A	C	100	PASS	AVGPOST=1;AN=2184;VT=SNP;THETA=0.0027;AA=A;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-2.58,-5	0|0:0:0,-5,-5
22	50887323	rs148590310	C	T	100	PASS	AA=C;AN=2184;AVGPOST=0.9997;THETA=0.0008;LDAF=0.001;VT=SNP;RSQ=0.8793;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0,-3.22,-5	0|0:0:-0.01,-1.77,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.02,-1.43,-5	0|0:0:-0,-3.05,-5
22	50887374	rs9628258	C	T	100	PASS	ERATE=0.0004;AA=C;THETA=0.0004;AN=2184;AC=16;VT=SNP;AVGPOST=0.9989;SNPSOURCE=LOWCOV;LDAF=0.0076;RSQ=0.9337;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.13,-0.59,-2.89	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.04,-1.03,-5
22	50888842	rs181770000	C	T	100	PASS	ERATE=0.0005;AA=C;AN=2184;LDAF=0.0018;RSQ=0.551;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AVGPOST=0.9982;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0.2:-0.18,-0.47,-2.36	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.68,-4	0|0:0.05:-0.48,-0.48,-0.48
22	50888923	rs7284639	C	T	100	PASS	ERATE=0.0005;RSQ=0.9885;LDAF=0.0576;AA=C;THETA=0.0004;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AC=125;AF=0.06;AMR_AF=0.02;AFR_AF=0.24	GT:DS:GL	0|0:0:-0.18,-0.47,-2.43	0|0:0:-0.23,-0.45,-1.23	0|0:0:-0.04,-1.05,-5	0|0:0:-0.06,-0.89,-5	0|0:0:-0.03,-1.21,-5
22	50890076	rs148908585	A	C	100	PASS	ERATE=0.0005;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9993;AA=A;SNPSOURCE=LOWCOV;AC=1;RSQ=0.5771;LDAF=0.0008;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0,-3.92,-5	0|0:0:-0,-4.22,-5	0|0:0:-0.21,-0.42,-5	0|0:0:-0,-2.65,-5
22	50891099	rs193130998	C	A	100	PASS	ERATE=0.0004;LDAF=0.0013;AA=C;RSQ=0.4504;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=1;AVGPOST=0.9984;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.05,-1,-5	0|0:0:-0.04,-1.03,-5	0|0:0:-0.1,-0.67,-3.92	0|0:0:-0.07,-0.83,-5
22	50891265	rs185275360	G	A	100	PASS	RSQ=0.7645;AA=g;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0,-2.61,-5	0|0:0:-0,-2.48,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.02,-1.42,-5	0|0:0:-0.01,-1.84,-5
22	50894026	rs115969873	G	A	100	PASS	LDAF=0.0042;AA=G;AN=2184;RSQ=0.9688;AVGPOST=0.9997;THETA=0.0005;VT=SNP;AC=9;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0041;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0,-3.92,-5	0|0:0:-0.01,-1.85,-5	0|0:0:-0,-2.31,-5	0|0:0:-0,-1.97,-5
22	50894849	rs2076713	G	A	100	PASS	ERATE=0.0005;AVGPOST=0.9977;AA=G;AN=2184;VT=SNP;LDAF=0.1713;THETA=0.0006;RSQ=0.9936;SNPSOURCE=LOWCOV;AC=374;AF=0.17;ASN_AF=0.29;AMR_AF=0.17;AFR_AF=0.07;EUR_AF=0.15	GT:DS:GL	0|0:0:-0.01,-1.93,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:-0,-2.76,-5
22	50895787	rs188479554	C	G	100	PASS	LDAF=0.0024;AA=C;THETA=0.0004;RSQ=0.7788;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0015;AF=0.0018;ASN_AF=0.0017;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.02,-1.43,-5	0|0:0:-0.01,-1.55,-5	0|0:0:-0.01,-1.75,-5	0|0:0:-0.09,-0.71,-5	0|0:0:-0.02,-1.34,-5
22	50896389	rs117630453	C	T	100	PASS	AA=C;AC=18;THETA=0.0002;AN=2184;RSQ=0.6826;VT=SNP;AVGPOST=0.993;SNPSOURCE=LOWCOV;ERATE=0.0006;LDAF=0.0081;AF=0.01;ASN_AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.21,-0.46,-1.35	0|0:0:-0.04,-1.02,-5	0|0:0:-0.02,-1.42,-5	0|0:0:-0.48,-0.48,-0.48
22	50897093	rs142630172	C	T	100	PASS	AA=C;RSQ=0.8613;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9989;LDAF=0.0028;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AMR_AF=0.0028;AFR_AF=0.002;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0.01,-1.5,-5	0|0:0:-0.01,-1.8,-5	0|0:0:-0.03,-1.13,-5	0|0:0:-0.03,-1.12,-5
22	50898848	rs73891245	C	T	100	PASS	AC=7;LDAF=0.0033;THETA=0.0004;AN=2184;VT=SNP;AA=c;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.9741;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50899579	rs115010488	G	A	100	PASS	ERATE=0.0005;LDAF=0.0027;AN=2184;VT=SNP;RSQ=0.8517;AA=A;AVGPOST=0.9991;AC=5;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0023;ASN_AF=0.0017;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:-0,-3,-5	0|0:0:-0,-2.81,-5	0|0:0:0,-5,-5
22	50900301	rs140466449	G	A	100	PASS	RSQ=0.9843;AA=G;AN=2184;AC=6;VT=SNP;LDAF=0.0028;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9999;AF=0.0027;ASN_AF=0.01	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50901009	rs5771037	C	T	100	PASS	LDAF=0.1558;RSQ=0.9963;AN=2184;AC=341;THETA=0.0005;VT=SNP;AA=c;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.16;ASN_AF=0.42;AMR_AF=0.14;AFR_AF=0.01;EUR_AF=0.07	GT:DS:GL	0|0:0:-0,-3.7,-5	0|0:0:-0.07,-0.82,-3.49	0|1:1:-0.22,-0.46,-1.26	0|0:0:-0,-3.59,-5	0|0:0:-0,-1.97,-5
22	50901619	rs191952407	C	T	100	PASS	AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9997;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;RSQ=0.7844;ERATE=0.0003;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.74,-5	0|0:0:-0,-3.62,-5	0|0:0:-0,-2.98,-5	0|0:0:0,-5,-5
22	50901995	rs145789102	C	T	100	PASS	LDAF=0.0041;AA=C;AN=2184;VT=SNP;AC=9;RSQ=0.9378;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0041;ASN_AF=0.01;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.22,-5	0|0:0:-0,-2.28,-5	0|0:0:-0,-2.41,-5	0|0:0:-0.05,-0.99,-5	0|0:0:-0,-2.71,-5
22	50902254	rs77142290	C	T	100	PASS	AA=C;RSQ=0.9761;LDAF=0.0516;AN=2184;AC=111;VT=SNP;AVGPOST=0.9969;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.05;ASN_AF=0.02;AMR_AF=0.03;AFR_AF=0.08;EUR_AF=0.07	GT:DS:GL	0|0:0:-0,-2,-5	0|0:0:-0.01,-1.49,-5	0|0:0:-0,-2.72,-5	0|0:0:-0.06,-0.87,-5	0|0:0:-0,-3.1,-5
22	50902423	rs141688800	T	C	100	PASS	ERATE=0.0004;THETA=0.0002;AN=2184;RSQ=0.8158;VT=SNP;AVGPOST=0.9989;LDAF=0.0023;SNPSOURCE=LOWCOV;AC=4;AA=t;AF=0.0018;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.08,-0.76,-5	0|0:0:-0.04,-1.08,-5	0|0:0:-0,-3.52,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0,-3.47,-5
22	50902587	rs192972058	A	G	100	PASS	ERATE=0.0005;RSQ=0.6357;AN=2184;AC=8;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;AVGPOST=0.9955;LDAF=0.0051;AF=0.0037;ASN_AF=0.01	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0.03,-1.12,-5	0|0:0:-0,-3.42,-5
22	50902751	rs5771041	C	T	100	PASS	AA=C;AN=2184;AC=372;LDAF=0.1703;THETA=0.0005;VT=SNP;RSQ=0.9924;AVGPOST=0.997;SNPSOURCE=LOWCOV;ERATE=0.0022;AF=0.17;ASN_AF=0.43;AMR_AF=0.14;AFR_AF=0.04;EUR_AF=0.07	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.62,-5	0|1:1:-5,-0.03,-1.13	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50903604	rs76137009	G	A	100	PASS	RSQ=0.739;AA=g;AN=2184;AVGPOST=0.9996;VT=SNP;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;THETA=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50903985	rs189477506	C	A	100	PASS	ERATE=0.0005;LDAF=0.0013;AA=C;AN=2184;RSQ=0.7403;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=2;THETA=0.0003;AF=0.0009;AMR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0,-2.25,-5	0|0:0:-0.05,-1,-5	0|0:0:-0.03,-1.18,-5	0|0:0:-0.03,-1.21,-5
22	50905904	rs6010102	G	A	100	PASS	AA=G;AN=2184;THETA=0.0001;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0723;RSQ=0.9989;AC=158;AF=0.07;AMR_AF=0.02;AFR_AF=0.31	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50907179	rs185155752	C	G	100	PASS	RSQ=0.6299;AA=C;THETA=0.0002;AN=2184;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.07,-0.81,-5	0|0:0:-0,-2.4,-5	0|0:0:-0.01,-1.93,-5	0|0:0:-0.06,-0.88,-5	0|0:0:-0,-3.36,-5
22	50907706	rs55996881	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;LDAF=0.0105;RSQ=0.9072;THETA=0.0005;VT=SNP;AC=22;AVGPOST=0.9976;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.0035;AMR_AF=0.01;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0,-2.05,-5	0|0:0:-0.03,-1.24,-5	0|0:0:-0.18,-0.48,-2.17	0|0:0:-0.06,-0.89,-5
22	50908538	rs151333479	C	A	100	PASS	AVGPOST=0.9904;AA=C;THETA=0.0004;AN=2184;ERATE=0.0009;VT=SNP;AC=22;SNPSOURCE=LOWCOV;RSQ=0.7204;LDAF=0.0135;AF=0.01;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.02,-1.27,-5	0|0:0:-0.2,-0.44,-2.08	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.03,-1.16,-5	0|0:0:-0.1,-0.67,-5
22	50909457	rs80349658	T	C	100	PASS	AVGPOST=0.9966;AA=T;AN=2184;LDAF=0.055;AC=119;VT=SNP;RSQ=0.9754;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.05;AMR_AF=0.09;AFR_AF=0.02;EUR_AF=0.1	GT:DS:GL	0|0:0:-0.01,-1.77,-5	0|0:0:-0.04,-1.07,-5	0|0:0:-0.13,-0.61,-2.22	1|0:1:-0.19,-0.46,-2.41	0|0:0:-0,-2.72,-5
22	50910043	rs12484564	G	A	100	PASS	AN=2184;LDAF=0.0173;AVGPOST=0.9975;VT=SNP;THETA=0.0011;AA=A;RSQ=0.9395;SNPSOURCE=LOWCOV;AC=36;ERATE=0.0006;AF=0.02;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.11,-0.65,-4.22	0|0:0:-0.12,-0.63,-3.25	0|1:1:-2.43,-0.12,-0.62	0|0:0:-0.19,-0.46,-2.06	0|0:0:-0.06,-0.87,-5
22	50910241	rs141812710	G	C	100	PASS	ERATE=0.0004;RSQ=0.8728;AA=G;AN=2184;LDAF=0.0032;AC=6;THETA=0.0005;VT=SNP;AVGPOST=0.9991;SNPSOURCE=LOWCOV;AF=0.0027;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.19,-0.46,-2.42	0|0:0:-0.11,-0.65,-4.7
22	50910527	rs150653976	G	A	100	PASS	LDAF=0.0016;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;RSQ=0.8538;AVGPOST=0.9995;AC=3;THETA=0.0003;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-3.18,-5	0|0:0:-0.12,-0.61,-3.92	0|0:0:-0.02,-1.3,-5	0|0:0:-0.01,-1.73,-5	0|0:0:-0,-1.97,-5
22	50910806	rs77853747	C	T	100	PASS	AA=C;THETA=0.0002;AN=2184;AC=6;AVGPOST=0.9996;VT=SNP;RSQ=0.942;LDAF=0.0029;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0,-2.28,-5	0|0:0:-0.02,-1.27,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0,-2.91,-5
22	50911011	rs149834212	G	A	100	PASS	LDAF=0.0016;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;THETA=0.0003;RSQ=0.5311;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.01,-1.62,-5	0|0:0:-0,-2.28,-5	0|0:0:-0,-2.23,-5	0|0:0:-0,-2.38,-5	0|0:0:-0,-2.33,-5
22	50911092	rs144768154	C	G	100	PASS	RSQ=0.9469;AA=C;AC=18;AN=2184;LDAF=0.0079;VT=SNP;THETA=0.0006;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.03;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.06,-0.91,-5	0|0:0:-0.02,-1.27,-5	0|0:0:-0,-2.46,-5	0|0:0:-0.01,-1.48,-5	0|0:0:-0.03,-1.23,-5
22	50911345	rs150964980	G	A	100	PASS	AVGPOST=0.9985;ERATE=0.0014;LDAF=0.0021;AA=g;AN=2184;RSQ=0.6791;VT=SNP;SNPSOURCE=LOWCOV;AC=3;THETA=0.0003;AF=0.0014;ASN_AF=0.0017;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0,-1.99,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.04,-1.06,-5	0|0:0:-0.11,-0.65,-4.4	0|0:0:-0.07,-0.85,-5
22	50911553	rs57506049	CT	C	298	PASS	ERATE=0.0005;AC=166;RSQ=0.9728;AN=2184;VT=INDEL;THETA=0.0005;LDAF=0.0758;AVGPOST=0.9955;AF=0.08;ASN_AF=0.02;AMR_AF=0.04;AFR_AF=0.18;EUR_AF=0.06	GT:DS:GL	0|0:0:0,-0.3,-4.5	0|0:0:0,-0.6,-9	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0
22	50912623	rs193173741	G	A	100	PASS	ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;LDAF=0.0012;AC=2;RSQ=0.7802;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0.16,-0.51,-2.6	0|0:0:-0.01,-1.73,-5
22	50913639	rs114605366	C	T	100	PASS	AA=C;THETA=0.0004;AN=2184;AC=46;RSQ=0.7978;VT=SNP;ERATE=0.001;AVGPOST=0.9872;SNPSOURCE=LOWCOV;LDAF=0.0236;AF=0.02;AMR_AF=0.01;AFR_AF=0.07;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.36,-0.41,-0.77	0|0:0:-0.48,-0.48,-0.48
22	50913814	rs188606915	G	T	100	PASS	ERATE=0.0005;AVGPOST=0.9983;AA=g;AN=2184;VT=SNP;RSQ=0.8939;AC=14;SNPSOURCE=LOWCOV;LDAF=0.0069;THETA=0.0003;AF=0.01;AMR_AF=0.0028;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.57,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.13,-0.6,-3.05	0|0:0:-0.06,-0.9,-5	0|0:0:-0.34,-0.39,-0.87
22	50915158	rs190087743	G	C	100	PASS	ERATE=0.0004;AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=2;RSQ=0.7473;AF=0.0009;ASN_AF=0.0017;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0,-3.21,-5	0|0:0:-0.12,-0.63,-4.1	0|0:0:-0.04,-1.03,-5	0|0:0:-0.06,-0.92,-5	0|0:0:-0.03,-1.13,-5
22	50915238	.	A	AT	477	PASS	AC=160;AVGPOST=0.9985;AN=2184;VT=INDEL;LDAF=0.073;ERATE=0.0003;RSQ=0.9918;THETA=0.0003;AF=0.07;AMR_AF=0.02;AFR_AF=0.31	GT:DS:GL	0|0:0:0,-3,-37.2	0|0:0:0,-1.5,-18.5	0|0:0:0,-2.7,-33.2	0|0:0:0,0,0	0|0:0:0,-0.3,-3.7
22	50915429	rs138677455	G	A	100	PASS	ERATE=0.0005;AA=G;AN=2184;AC=6;THETA=0.0005;VT=SNP;AVGPOST=0.9988;LDAF=0.003;SNPSOURCE=LOWCOV;RSQ=0.8336;AF=0.0027;AFR_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.01,-1.58,-5	0|0:0:-0.03,-1.25,-5	0|0:0:-0,-2.14,-5	0|0:0:-0.02,-1.39,-5	0|0:0:-0.12,-0.62,-3.85
22	50915696	rs147072564	T	C	100	PASS	ERATE=0.0005;RSQ=0.8037;AA=T;AN=2184;VT=SNP;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0029;AVGPOST=0.9995;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.12,-0.63,-3.28	0|0:0:-0.19,-0.45,-2.19	0|0:0:-0.01,-1.69,-5	0|0:0:-0.1,-0.67,-5
22	50916129	rs184918342	G	A	100	PASS	AVGPOST=0.9912;THETA=0.0004;AA=G;AN=2184;AC=8;RSQ=0.4514;VT=SNP;ERATE=0.001;SNPSOURCE=LOWCOV;LDAF=0.006;AF=0.0037;ASN_AF=0.01;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.04,-1.06,-5	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.22,-0.42,-1.78	0|0:0.15:-0.36,-0.41,-0.77	0|0:0.45:-2.72,-0,-5
22	50916373	rs191031127	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9994;THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.7592;SNPSOURCE=LOWCOV;LDAF=0.0012;AC=2;AF=0.0009;AMR_AF=0.01	GT:DS:GL	0|0:0:-0.11,-0.66,-5	0|0:0:-0.07,-0.8,-5	0|0:0:-0.21,-0.47,-1.35	0|0:0:-0.02,-1.47,-5	0|0:0:-0.07,-0.85,-5
22	50917846	rs61302726	C	T	100	PASS	ERATE=0.0005;AVGPOST=0.9977;AA=C;AN=2184;VT=SNP;AC=34;SNPSOURCE=LOWCOV;THETA=0.0007;RSQ=0.9434;LDAF=0.0164;AF=0.02;AMR_AF=0.0028;AFR_AF=0.07	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.47,-2.08	0|0:0:-0.22,-0.42,-1.76
22	50917955	rs142198322	G	C	100	PASS	LDAF=0.0013;AA=G;AN=2184;RSQ=0.778;VT=SNP;AVGPOST=0.9993;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AC=2;AF=0.0009;AMR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.06,-0.88,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.09,-0.73,-4.4	0|0:0:-0.13,-0.58,-3.44
22	50918300	rs142392873	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=4;AVGPOST=0.9984;RSQ=0.7252;AF=0.0018;ASN_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0,-2.01,-5	0|0:0:-0.04,-1.03,-5	0|0:0:-0.01,-1.77,-5	0|0:0.1:-1.93,-0.02,-1.47
22	50918406	rs9616854	G	A	100	PASS	ERATE=0.0004;LDAF=0.2828;AN=2184;AC=615;VT=SNP;AA=A;THETA=0.0012;SNPSOURCE=LOWCOV;RSQ=0.9865;AVGPOST=0.9929;AF=0.28;ASN_AF=0.11;AMR_AF=0.38;AFR_AF=0.14;EUR_AF=0.46	GT:DS:GL	1|1:2:-5,-0.69,-0.1	0|1:1:-4,-0,-4.4	0|0:0:-0.12,-0.62,-2.31	1|0:1:-4.7,-0.02,-1.37	0|1:0.9:-0.48,-0.48,-0.48
22	50918887	rs190637335	C	T	100	PASS	AA=C;RSQ=0.4378;AN=2184;LDAF=0.0032;VT=SNP;ERATE=0.0011;AVGPOST=0.9956;SNPSOURCE=LOWCOV;AC=4;THETA=0.0058;AF=0.0018;ASN_AF=0.0017;AFR_AF=0.002;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.12,-0.63,-3.27	0|0:0:-0.19,-0.45,-2.18	0|0:0:-0.18,-0.48,-2.17	0|0:0:-0.09,-0.74,-5
22	50919282	rs186060390	G	A	100	PASS	AVGPOST=0.9904;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0012;RSQ=0.6674;AC=19;LDAF=0.0115;AF=0.01;ASN_AF=0.0035;AFR_AF=0.03;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0.26,-0.4,-1.32	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.18,-0.46,-3.03
22	50923017	rs188816229	G	T	100	PASS	ERATE=0.0004;AA=G;AN=2184;RSQ=0.5775;VT=SNP;AVGPOST=0.9964;AC=5;SNPSOURCE=LOWCOV;THETA=0.0013;LDAF=0.0031;AF=0.0023;ASN_AF=0.0017;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.57,-5	0|0:0:-0.44,-0.46,-0.54	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.03,-1.16,-5	0|0:0:-0.18,-0.47,-3.06
22	50924348	rs186487910	C	T	100	PASS	AA=C;AN=2184;AVGPOST=0.9996;VT=SNP;RSQ=0.7048;LDAF=0.0007;THETA=0.0122;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.01,-1.83,-5	0|0:0:-0.04,-1.03,-5	0|0:0.05:-0.13,-0.61,-2.22	0|0:0:-0.03,-1.15,-5	0|0:0:-0.11,-0.65,-4.7
22	50924585	rs191378578	C	T	100	PASS	LDAF=0.0027;AA=C;THETA=0.018;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9961;AC=3;RSQ=0.4687;AF=0.0014;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0,-3.44,-5	0|0:0:-0,-2.4,-5	0|0:0:-0.1,-0.69,-4.1	0|0:0:-0,-2.05,-5
22	50926177	rs141438930	C	T	100	PASS	AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50926466	.	A	G	100	PASS	AVGPOST=1;AN=2184;RSQ=0.9844;VT=SNP;AA=A;ERATE=0.0008;SNPSOURCE=EXOME;LDAF=0.0014;AC=3;THETA=0.0003;AF=0.0014;AMR_AF=0.01	GT:DS:GL	0|0:0:-0,-4,-5	0|0:0:-0,-4,-5	0|0:0:-0,-4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50926568	rs139015483	C	G	100	PASS	AA=C;LDAF=0.0066;AN=2184;RSQ=0.943;AVGPOST=0.999;VT=SNP;AC=14;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0,-4,-5	0|0:0:-0.01,-1.51,-5	0|0:0:-0.13,-0.6,-2.16	0|0:0:-0.01,-1.93,-5	0|0:0:0,-5,-5
22	50926679	.	C	A	100	PASS	LDAF=0.0004;AA=C;AN=2184;THETA=0.0005;RSQ=0.8551;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50926800	.	G	A	100	PASS	LDAF=0.0004;AA=G;AN=2184;RSQ=0.8551;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-2.46,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50927115	rs59051390	A	C	100	PASS	THETA=0.0093;AN=2184;AC=678;LDAF=0.3377;VT=SNP;AVGPOST=0.8633;SNPSOURCE=LOWCOV;AA=a;RSQ=0.7765;ERATE=0.0202;AF=0.31;ASN_AF=0.44;AMR_AF=0.35;AFR_AF=0.32;EUR_AF=0.19	GT:DS:GL	0|0:0.2:-0.48,-0.48,-0.48	0|1:0.65:-0.48,-0.48,-0.48	0|1:0.85:-0.48,-0.48,-0.48	0|0:0.3:-0.18,-0.48,-2.21	0|0:0.2:-0.15,-0.54,-4.1
22	50927163	rs144549629	G	A	100	PASS	LDAF=0.0273;AA=G;AN=2184;AC=55;VT=SNP;RSQ=0.8792;AVGPOST=0.9918;SNPSOURCE=LOWCOV;THETA=0.0073;ERATE=0.0007;AF=0.03;AMR_AF=0.01;AFR_AF=0.11	GT:DS:GL	0|0:0:-0.19,-0.45,-2.18	0|0:0:-0.07,-0.81,-3.42	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.69,-5
22	50928311	rs190239688	G	A	100	PASS	RSQ=0.8687;LDAF=0.0016;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;THETA=0.0027;ERATE=0.0011;AVGPOST=0.9995;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-3.7,-5	0|0:0:-0,-2.51,-5	0|0:0:-0,-2.14,-5	0|0:0:0,-5,-5	0|0:0:-0,-4.4,-5
22	50928331	rs2232887	G	A	100	PASS	AVGPOST=0.9804;THETA=0.0054;SNPSOURCE=LOWCOV,EXOME;AA=G;AN=2184;VT=SNP;ERATE=0.0026;LDAF=0.2223;RSQ=0.9625;AC=476;AF=0.22;ASN_AF=0.4;AMR_AF=0.24;AFR_AF=0.23;EUR_AF=0.06	GT:DS:GL	0|0:0:-0.02,-1.33,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.05,-0.98,-4.7	0|0:0:-0,-4.1,-5	0|0:0:-0,-3.7,-5
22	50929207	rs149311756	C	T	100	PASS	AC=12;RSQ=0.9543;AA=C;AN=2184;LDAF=0.0057;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9995;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.72,-5	0|0:0:-0.01,-1.51,-5	0|0:0:-0.22,-0.46,-1.27	0|0:0:-0.06,-0.88,-5	0|0:0:-0.06,-0.88,-5
22	50929926	rs190089543	C	T	100	PASS	THETA=0.0009;ERATE=0.0004;AA=C;AN=2184;RSQ=0.4918;VT=SNP;AC=5;SNPSOURCE=LOWCOV;AVGPOST=0.9929;LDAF=0.005;AF=0.0023;AFR_AF=0.002;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.2,-0.44,-2.04	0|0:0:-0.11,-0.64,-4.1	0|0:0.15:-0.18,-0.48,-2.17	0|0:0:-0.19,-0.46,-2.98
22	50930611	rs189802900	C	T	100	PASS	THETA=0.0015;AA=C;AN=2184;VT=SNP;AVGPOST=0.9964;RSQ=0.386;LDAF=0.0025;SNPSOURCE=LOWCOV;AC=2;ERATE=0.0007;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.67,-4	0|0:0:-0.19,-0.45,-2.11
22	50931723	rs191648974	C	T	100	PASS	THETA=0.0021;AA=C;AN=2184;AVGPOST=0.9979;ERATE=0.0009;LDAF=0.0015;VT=SNP;SNPSOURCE=LOWCOV;AC=1;RSQ=0.3764;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.03,-1.23,-5	0|0:0:-0.35,-0.43,-0.73	0|0:0:-0.22,-0.42,-1.69	0|0:0:-0.06,-0.9,-5	0|0:0:-0.12,-0.63,-3.92
22	50931892	rs142036026	A	C	100	PASS	AC=12;THETA=0.0026;RSQ=0.9881;AN=2184;VT=SNP;AA=A;LDAF=0.0056;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9999;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.03,-1.22,-5	0|0:0:-0,-2.62,-5	0|0:0:-0.01,-1.6,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.02,-1.33,-5
22	50931961	rs192373954	C	T	100	PASS	THETA=0.0015;AA=C;AN=2184;RSQ=0.545;VT=SNP;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;ERATE=0.0006;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.04,-1.05,-5	0|0:0:-0.06,-0.88,-4.4	0|0:0:-0.11,-0.66,-4.4	0|0:0:-0,-2.1,-5
22	50932455	rs143641902	G	C	100	PASS	ERATE=0.0005;AA=G;AN=2184;LDAF=0.0102;AC=16;VT=SNP;THETA=0.0011;AVGPOST=0.9922;RSQ=0.6767;SNPSOURCE=LOWCOV;AF=0.01;ASN_AF=0.03	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.23,-0.45,-1.23	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.69,-4.1	0|0:0:-0.48,-0.48,-0.48
22	50932563	rs5771060	C	T	100	PASS	THETA=0.0009;AVGPOST=0.9745;LDAF=0.9251;AA=T;AN=2184;VT=SNP;RSQ=0.8699;SNPSOURCE=LOWCOV;ERATE=0.0007;AC=2033;AF=0.93;ASN_AF=0.97;AMR_AF=0.94;AFR_AF=0.88;EUR_AF=0.92	GT:DS:GL	1|1:2:-5,-1.41,-0.02	1|1:2:-2.37,-0.44,-0.2	1|1:1.95:-4.7,-0.65,-0.11	0|1:0.8:-0.19,-0.46,-2.4	1|1:1.85:-0.48,-0.48,-0.48
22	50932822	rs188955663	G	T	100	PASS	ERATE=0.0004;AVGPOST=0.9985;AN=2184;VT=SNP;AA=-;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4708;THETA=0.0007;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0.12,-0.62,-3.24	0|0:0:-0.07,-0.83,-5	0|0:0:-0.02,-1.26,-5	0|0:0:-0.04,-1.07,-5
22	50932842	rs151123764	C	A	100	PASS	LDAF=0.0033;AN=2184;AVGPOST=0.9979;VT=SNP;RSQ=0.7069;AA=-;THETA=0.0183;ERATE=0.0008;AC=5;SNPSOURCE=LOWCOV;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.77,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.04,-1.03,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.07,-0.85,-5
22	50934572	rs181488862	G	A	100	PASS	ERATE=0.0004;AA=g;AN=2184;THETA=0.016;RSQ=0.4524;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;LDAF=0.0012;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:-0.03,-1.12,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0.05:-0.2,-0.45,-2.1	0|0:0:-0.06,-0.9,-5	0|0:0:-0.48,-0.48,-0.48
22	50935765	rs75385568	G	A	100	PASS	AA=G;AN=2184;THETA=0.0008;AVGPOST=0.9996;VT=SNP;RSQ=0.0747;AC=0;SNPSOURCE=LOWCOV;LDAF=0.0002;ERATE=0.0003;AF=0	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0,-2.28,-5	0|0:0:-0.01,-1.73,-5	0|0:0:-0.03,-1.11,-5	0|0:0:-0,-2.32,-5
22	50936004	rs141982785	C	T	100	PASS	AC=12;ERATE=0.0004;AA=C;LDAF=0.0068;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9961;RSQ=0.7808;AF=0.01;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.08,-0.76,-5	0|0:0:-0.21,-0.44,-1.99	0|0:0:-0.03,-1.15,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.12,-0.63,-3.92
22	50936609	.	T	TA	122	PASS	RSQ=0.9537;AC=1181;AN=2184;VT=INDEL;THETA=0.0005;ERATE=0.0011;LDAF=0.5337;AVGPOST=0.9678;AF=0.54;ASN_AF=0.71;AMR_AF=0.54;AFR_AF=0.41;EUR_AF=0.5	GT:DS:GL	1|1:2:-10.7,-1.9,0	1|0:1.05:-3,-0.3,0	1|0:1:0,-0.2,-0.6	0|0:0:0,-0.9,-9.8	0|0:0.5:0,0,0
22	50937054	rs187680819	T	C	100	PASS	ERATE=0.0004;AVGPOST=0.9994;AA=T;AN=2184;VT=SNP;THETA=0.0033;SNPSOURCE=LOWCOV;AC=1;RSQ=0.6229;LDAF=0.0008;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0,-2.58,-5	0|0:0:-0,-3.85,-5	0|0:0:-0.01,-1.71,-5	0|0:0:-0.19,-0.46,-2.16
22	50937969	rs9616786	T	G	100	PASS	AVGPOST=0.9985;LDAF=0.1274;AA=T;AN=2184;RSQ=0.9944;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=278;ERATE=0.0003;AF=0.13;ASN_AF=0.03;AMR_AF=0.14;AFR_AF=0.12;EUR_AF=0.2	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0.12,-0.63,-4.1	0|1:1:-5,-0.73,-0.09	0|0:0:-0.1,-0.69,-4.1	0|0:0:-0.11,-0.64,-4
22	50938061	rs184963898	G	A	100	PASS	AC=7;THETA=0.0021;RSQ=0.6449;AA=G;AN=2184;LDAF=0.0032;AVGPOST=0.9972;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0006;AF=0.0032;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.02,-1.28,-5	0|0:0:-0.1,-0.69,-3.8	0|0:0:-0.18,-0.47,-2.15	0|0:0:-0.16,-0.5,-3.59
22	50939304	rs7511557	G	C	100	PASS	AVGPOST=0.9963;RSQ=0.9929;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1522;LDAF=0.6961;ERATE=0.0006;AF=0.7;ASN_AF=0.76;AMR_AF=0.69;AFR_AF=0.53;EUR_AF=0.76	GT:DS:GL	1|1:2:-5,-1.93,-0.01	1|1:2:-5,-2.19,-0	1|1:2:-4.7,-0.71,-0.09	1|0:1:-5,-0.02,-1.38	1|1:2:-5,-1.59,-0.01
22	50939811	rs149877306	A	G	100	PASS	RSQ=0.9655;AC=112;THETA=0.0023;AN=2184;AVGPOST=0.9952;VT=SNP;AA=A;SNPSOURCE=LOWCOV;LDAF=0.0519;ERATE=0.0007;AF=0.05;AMR_AF=0.02;AFR_AF=0.21	GT:DS:GL	0|0:0:-0.04,-1.08,-5	0|0:0:-0.19,-0.45,-2.2	0|0:0:-0.19,-0.46,-2.21	0|0:0:-0.2,-0.44,-2.08	0|0:0.05:-0.11,-0.65,-4.7
22	50940261	rs143393199	G	C	100	PASS	ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;AVGPOST=0.9956;AC=15;SNPSOURCE=LOWCOV;RSQ=0.7975;LDAF=0.008;AF=0.01;ASN_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0.06,-0.86,-5	0|0:0:-0.01,-1.74,-5	0|0:0:-0.03,-1.16,-5	0|0:0:-0.01,-1.83,-5
22	50940432	rs146712084	C	T	100	PASS	AA=C;AN=2184;AC=16;VT=SNP;AVGPOST=0.9993;RSQ=0.9553;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0003;LDAF=0.0076;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0,-2.33,-5	0|0:0:-0.16,-0.54,-1.91	0|0:0:-0.02,-1.39,-5	0|0:0:-0.1,-0.68,-4	0|0:0:-0.2,-0.44,-2.02
22	50940784	rs147818580	G	T	100	PASS	THETA=0.0009;LDAF=0.0156;RSQ=0.9758;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;AC=33;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:-0,-2.45,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-1.43,-0.02,-2.13	1|0:1:-5,-0,-4.1	0|1:1:-0.87,-0.06,-5
22	50940953	rs76133717	C	G	100	PASS	RSQ=0.9739;AC=35;AA=C;AN=2184;AVGPOST=0.999;VT=SNP;THETA=0.0028;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0164;AF=0.02;AMR_AF=0.01;AFR_AF=0.07	GT:DS:GL	0|0:0:-0.02,-1.43,-5	0|0:0:-0.07,-0.82,-4.4	0|0:0:-0.13,-0.6,-2.21	0|0:0:-0.03,-1.2,-5	0|0:0:-0.01,-1.65,-5
22	50940965	rs188321024	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;THETA=0.0005;VT=SNP;AVGPOST=0.9993;AC=9;LDAF=0.0044;SNPSOURCE=LOWCOV;RSQ=0.922;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.71,-5	0|0:0:-0.08,-0.78,-3.27	0|0:0:-0.08,-0.79,-3.92	0|0:0:-0.05,-0.98,-5	0|0:0:-0.02,-1.31,-5
22	50941077	rs112118956	G	A	100	PASS	ERATE=0.0004;RSQ=0.9367;LDAF=0.0066;AA=G;AN=2184;VT=SNP;THETA=0.0006;AC=14;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.05,-0.99,-5	0|0:0:-0.06,-0.92,-4.7	0|0:0:-0.03,-1.22,-5	0|0:0:-0.02,-1.39,-5	0|0:0:-0.06,-0.9,-5
22	50941759	rs141647829	C	T	100	PASS	RSQ=0.8684;AA=C;AVGPOST=0.9966;THETA=0.0022;LDAF=0.0103;AN=2184;AC=20;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.03;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.01,-1.6,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0,-2.22,-5	0|0:0:-0,-2.96,-5
22	50941761	rs190529029	G	A	100	PASS	AA=G;AN=2184;RSQ=0.9825;AVGPOST=0.9997;AC=16;VT=SNP;THETA=0.0006;LDAF=0.0074;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.61,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0,-2.95,-5	0|0:0:-0,-3.19,-5
22	50942497	rs2334101	G	A	100	PASS	AC=1070;LDAF=0.4756;THETA=0.0004;AA=G;AN=2184;ERATE=0.0184;RSQ=0.7269;VT=SNP;AVGPOST=0.8233;SNPSOURCE=LOWCOV;AF=0.49;ASN_AF=0.68;AMR_AF=0.51;AFR_AF=0.3;EUR_AF=0.46	GT:DS:GL	1|1:1.95:-3.32,-0.48,-0.18	1|1:1.65:-0.29,-0.43,-0.92	1|0:0.8:-0.48,-0.48,-0.48	0|0:0.35:-0.18,-0.47,-2.44	1|0:1.1:-3.52,-0.47,-0.18
22	50942630	rs192045599	G	A	100	PASS	LDAF=0.2154;THETA=0.0035;RSQ=0.2951;AA=G;AN=2184;AVGPOST=0.7125;AC=236;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0151;AF=0.11;ASN_AF=0.12;AMR_AF=0.06;AFR_AF=0.12;EUR_AF=0.11	GT:DS:GL	0|0:0.2:-0.48,-0.48,-0.48	0|0:0.6:-0.48,-0.48,-0.48	0|0:0.2:-0.48,-0.48,-0.48	0|0:0.5:-0.48,-0.48,-0.48	0|0:0.5:-0.22,-0.42,-1.76
22	50943684	rs111533411	G	A	100	PASS	AVGPOST=1;AA=G;AN=2184;VT=SNP;THETA=0.0006;RSQ=1;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50944492	rs112782856	C	T	100	PASS	ERATE=0.0005;RSQ=0.878;AN=2184;AVGPOST=0.9997;VT=SNP;AA=c;LDAF=0.0011;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0,-4.1,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:-0,-3.44,-5	0|0:0:-0,-3.04,-5
22	50945256	rs131824	A	G	100	PASS	AC=727;LDAF=0.333;AA=g;AN=2184;VT=SNP;RSQ=0.9961;ERATE=0.0008;AVGPOST=0.9973;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.33;ASN_AF=0.03;AMR_AF=0.36;AFR_AF=0.53;EUR_AF=0.42	GT:DS:GL	0|0:0:-0,-3.8,-5	1|0:1:-5,0,-5	1|1:2:-5,-5,0	0|1:1:-5,0,-5	0|0:0:0,-5,-5
22	50947196	rs45529631	T	C	100	PASS	THETA=0.0009;RSQ=0.935;AA=T;AN=2184;VT=SNP;AC=23;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9984;LDAF=0.0108;AF=0.01;AMR_AF=0.02;AFR_AF=0.0041;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0,-3.15,-5	0|0:0:-0,-3.08,-5	0|0:0:-0.02,-1.43,-5	0|0:0:-0,-2.96,-5
22	50947600	rs77958389	G	A	100	PASS	RSQ=0.9934;AA=G;AN=2184;VT=SNP;THETA=0.0006;AVGPOST=0.9998;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=25;LDAF=0.0115;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0.02,-1.28,-5	0|0:0:-0,-3.55,-5	0|0:0:-0.02,-1.44,-5	0|0:0:-0.01,-1.59,-5
22	50947743	rs145336973	G	C	100	PASS	AA=G;AN=2184;LDAF=0.0032;AC=6;VT=SNP;RSQ=0.9023;SNPSOURCE=LOWCOV;ERATE=0.0006;THETA=0.0003;AVGPOST=0.9992;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.77,-5	0|0:0:-0.01,-1.8,-5	0|0:0:-0,-2.27,-5	0|0:0:-0,-2.7,-5	0|0:0:-0,-2.35,-5
22	50948109	rs187634800	A	C	100	PASS	ERATE=0.0004;RSQ=0.9473;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;AA=A;LDAF=0.0029;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.79,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0.02,-1.32,-5	0|0:0:-0.03,-1.2,-5	0|0:0:-0.18,-0.47,-3.09
22	50948652	rs11091003	T	C	100	PASS	AA=T;AN=2184;VT=SNP;AC=97;ERATE=0.0008;RSQ=0.9669;SNPSOURCE=LOWCOV;THETA=0.0007;AVGPOST=0.9958;LDAF=0.046;AF=0.04;AMR_AF=0.02;AFR_AF=0.18	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.2,-0.48,-1.46	0|0:0:-0.2,-0.44,-2.04	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.22,-0.42,-1.7
22	50948813	rs150121997	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;THETA=0.0005;VT=SNP;AC=32;LDAF=0.015;RSQ=0.9802;SNPSOURCE=LOWCOV;AVGPOST=0.9992;AF=0.01;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:-0,-2.34,-5	0|0:0:-0.04,-1.04,-5	0|0:0:-0.01,-1.51,-5	1|0:1:-5,-0,-4.4	0|1:1:-4.4,-0,-5
22	50948878	rs185647467	A	C	100	PASS	AN=2184;VT=SNP;THETA=0.0006;AA=A;RSQ=0.5597;AVGPOST=0.9988;LDAF=0.0011;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-2.09,-5	0|0:0:-0,-2.53,-5	0|0:0:-0.01,-1.47,-5	0|0:0:-0.01,-1.72,-5	0|0:0:-0.01,-1.51,-5
22	50949297	rs144046314	A	G	100	PASS	ERATE=0.0004;RSQ=0.9219;THETA=0.0004;AN=2184;VT=SNP;AA=A;AC=14;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.007;AF=0.01;AFR_AF=0.03	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.26,-0.44,-1.07	0|0:0:-0.18,-0.47,-2.15	0|0:0:-0.48,-0.48,-0.48
22	50949376	rs148674269	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;AC=8;LDAF=0.0043;VT=SNP;RSQ=0.5487;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.995;AF=0.0037;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.03,-1.14,-5	0|0:0:-0.2,-0.45,-2.16	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50949407	rs139748626	C	T	100	PASS	ERATE=0.0004;LDAF=0.0067;AA=C;AN=2184;AC=13;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9984;RSQ=0.8878;AF=0.01;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.47,-2.02	0|0:0:-0.18,-0.47,-2.13	0|0:0.05:-0.48,-0.48,-0.48
22	50950507	rs73172235	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;AVGPOST=0.999;VT=SNP;AC=58;SNPSOURCE=LOWCOV;LDAF=0.027;ERATE=0.0003;RSQ=0.983;AF=0.03;AMR_AF=0.02;AFR_AF=0.02;EUR_AF=0.05	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0.07,-0.84,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.06,-0.9,-5	0|0:0:-0.19,-0.45,-2.12
22	50950815	rs114939047	C	T	100	PASS	AA=C;AVGPOST=0.9994;AN=2184;THETA=0.0008;VT=SNP;LDAF=0.0026;RSQ=0.8851;AC=5;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0023;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.02,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0,-2.06,-5	0|0:0:-0,-2.39,-5
22	50951158	rs78862895	A	G	100	PASS	AN=2184;RSQ=0.9083;AVGPOST=0.9975;LDAF=0.0106;VT=SNP;AC=23;THETA=0.0006;AA=A;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;ASN_AF=0.02;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.78,-5	0|0:0:-0.02,-1.28,-5	0|0:0:-0.01,-1.85,-5	0|0:0:-0,-1.95,-5	0|0:0:-0.02,-1.34,-5
22	50951736	rs191265366	C	T	100	PASS	ERATE=0.0004;AVGPOST=0.9985;AN=2184;THETA=0.0008;VT=SNP;AA=c;SNPSOURCE=LOWCOV;AC=1;RSQ=0.4467;LDAF=0.0012;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0.13,-0.58,-3.59	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.19,-0.45,-2.11
22	50952222	rs6010131	G	A	100	PASS	AVGPOST=0.9994;THETA=0.0004;AN=2184;VT=SNP;RSQ=0.9981;AA=A;SNPSOURCE=LOWCOV;AC=278;LDAF=0.1271;ERATE=0.0003;AF=0.13;ASN_AF=0.01;AMR_AF=0.05;AFR_AF=0.47;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.01,-1.74,-5	0|0:0:-0,-2.21,-5	0|0:0:-0,-2.92,-5	1|0:1:-4.22,-0,-3.32	0|1:1.05:-5,-1.57,-0.01
22	50952288	rs77475245	G	A	100	PASS	AA=G;AN=2184;RSQ=0.9612;VT=SNP;AC=41;SNPSOURCE=LOWCOV;THETA=0.0007;ERATE=0.0003;AVGPOST=0.9982;LDAF=0.0188;AF=0.02;AMR_AF=0.01;AFR_AF=0.08	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-3.55,-5	0|0:0:-0,-3.8,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0,-2.62,-5
22	50952392	rs12168005	C	A	100	PASS	ERATE=0.0005;AVGPOST=0.9963;RSQ=0.969;AA=C;LDAF=0.0431;THETA=0.0004;AN=2184;VT=SNP;AC=92;SNPSOURCE=LOWCOV;AF=0.04;AMR_AF=0.02;AFR_AF=0.17	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0.01,-1.56,-5	0|0:0:-0.04,-1.08,-5	0|0:0:-0.11,-0.66,-4.7	0|0:0.05:-0.11,-0.65,-4.7
22	50952466	rs146593633	G	A	100	PASS	ERATE=0.0004;LDAF=0.0066;AA=G;AN=2184;AC=13;VT=SNP;RSQ=0.8577;SNPSOURCE=LOWCOV;AVGPOST=0.9974;THETA=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.1,-0.69,-4.7	0|0:0:-0.12,-0.63,-4.1	0|0:0:-0,-2.4,-5	0|0:0:-0.06,-0.9,-5	0|0:0:-0.19,-0.46,-2.15
22	50953115	rs180802398	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.9135;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-3.21,-5	0|0:0:-0.02,-1.46,-5	0|0:0:-0.02,-1.32,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0.04,-1.11,-5
22	50953627	.	T	TG	235	PASS	ERATE=0.0004;AN=2184;VT=INDEL;AVGPOST=0.9967;LDAF=0.0062;AC=10;THETA=0.008;RSQ=0.7765;AF=0.0046;AFR_AF=0.0041;EUR_AF=0.01	GT:DS:GL	0|0:0:0,-1.2,-12.8	0|0:0:0,0,0	0|0:0:0,-0.6,-6.4	0|0:0:0,0,0	0|0:0:0,0,0
22	50954212	rs183242642	T	C	100	PASS	AA=T;AN=2184;VT=SNP;THETA=0.0006;RSQ=0.671;LDAF=0.0006;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AVGPOST=0.9995;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0,-3.85,-5	0|0:0:-0,-2.89,-5	0|0:0:-0.06,-0.89,-5	0|0:0:-0,-3.47,-5
22	50954754	rs6010135	T	G	100	PASS	AC=112;AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=LOWCOV;RSQ=0.9971;THETA=0.0007;ERATE=0.0003;LDAF=0.0512;AF=0.05;AMR_AF=0.02;AFR_AF=0.21	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.4,-5	0|0:0:-0,-3.92,-5	0|0:0:-0,-4.4,-5	0|0:0:0,-5,-5
22	50955181	rs11912916	T	G	100	PASS	RSQ=0.9882;AA=T;AN=2184;AVGPOST=0.9997;LDAF=0.0106;VT=SNP;AC=23;THETA=0.0057;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.01;AMR_AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0,-3.1,-5	0|0:0:-0,-3.55,-5	0|0:0:-0,-4.22,-5	0|0:0:-0,-3.09,-5	0|0:0:-0,-4.7,-5
22	50955505	rs192933866	T	C	100	PASS	THETA=0.0021;ERATE=0.0005;RSQ=0.6013;AA=T;AN=2184;AVGPOST=0.9981;VT=SNP;LDAF=0.002;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.01	GT:DS:GL	0|0:0:-0,-2,-5	0|0:0:-0.21,-0.46,-1.36	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.04,-1.06,-5	0|0:0:-0.03,-1.21,-5
22	50955538	rs131817	A	G	100	PASS	LDAF=0.5618;AA=G;AN=2184;RSQ=0.9142;AVGPOST=0.9411;VT=SNP;ERATE=0.029;SNPSOURCE=LOWCOV;THETA=0.0007;AC=1219;AF=0.56;ASN_AF=0.44;AMR_AF=0.55;AFR_AF=0.76;EUR_AF=0.52	GT:DS:GL	1|0:1:-5,0,-5	0|0:0.1:-0.21,-0.46,-1.36	1|1:1.6:-2.39,-0.13,-0.6	1|1:2:-5,-1.76,-0.01	0|1:1:-5,0,-5
22	50956724	.	G	A	100	PASS	AVGPOST=1;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;THETA=0.0013;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50956951	rs73443351	G	T	100	PASS	RSQ=0.8949;AA=G;AN=2184;THETA=0.0005;VT=SNP;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0017;AF=0.0018;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.15,-5	0|0:0:-0.01,-1.71,-5	0|0:0:-0.01,-1.53,-5	0|0:0:-0.01,-1.79,-5	0|0:0:-0,-2.01,-5
22	50958385	rs181227195	C	T	100	PASS	RSQ=0.6798;AA=C;AN=2184;AC=13;LDAF=0.009;VT=SNP;AVGPOST=0.993;SNPSOURCE=LOWCOV;THETA=0.0024;ERATE=0.0007;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.01,-1.92,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.2,-0.44,-2.06	0|0:0:-0.48,-0.48,-0.48
22	50958709	rs184882700	C	G	100	PASS	ERATE=0.0004;AN=2184;AC=6;VT=SNP;THETA=0.0011;AA=c;RSQ=0.7572;SNPSOURCE=LOWCOV;LDAF=0.0031;AVGPOST=0.9982;AF=0.0027;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.8,-5	0|0:0:-0.23,-0.41,-1.58	0|0:0:-0.14,-0.56,-2.79	0|0:0:-0.03,-1.15,-5	0|0:0:-0.05,-0.97,-5
22	50959796	rs56228847	A	T	100	PASS	AN=2184;AC=632;AVGPOST=0.9194;THETA=0.0005;VT=SNP;AA=A;SNPSOURCE=LOWCOV;LDAF=0.3083;ERATE=0.0383;RSQ=0.7699;AF=0.29;ASN_AF=0.34;AMR_AF=0.26;AFR_AF=0.25;EUR_AF=0.29	GT:DS:GL	1|0:1:-5,0,-5	0|1:1:-3.62,-0,-5	0|0:0.05:-0.19,-0.46,-5	1|0:1:-2.34,-0,-5	1|0:1:-5,-0,-3.7
22	50960270	.	G	A	100	PASS	AVGPOST=1;LDAF=0.0009;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;THETA=0.0019;RSQ=1;ERATE=0.0003;AC=2;AF=0.0009;ASN_AF=0.0035	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50960302	.	G	A	100	PASS	AA=G;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=EXOME;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0,-3.59,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50960428	.	C	T	100	PASS	AVGPOST=1;AA=C;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50960988	rs80181807	C	T	100	PASS	THETA=0.0004;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;AA=c;AC=38;LDAF=0.0174;ERATE=0.0003;RSQ=0.9974;AVGPOST=0.9999;AF=0.02;AMR_AF=0.01;AFR_AF=0.07	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50960989	.	G	A	100	PASS	AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;SNPSOURCE=EXOME;AC=1;THETA=0.001;RSQ=0.8457;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50961020	.	A	T	100	PASS	AVGPOST=1;AN=2184;THETA=0.0008;VT=SNP;AA=A;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50961058	.	C	T	100	PASS	AA=C;RSQ=0.876;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;EUR_AF=0.0013	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-2.86,-5	0|0:0:-0,-2.4,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50961503	.	C	T	100	PASS	THETA=0.0009;AVGPOST=1;AA=C;AN=2184;VT=SNP;SNPSOURCE=EXOME;AC=1;ERATE=0.0003;RSQ=0.9547;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-3.7,-5	0|0:0:-0,-2.2,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50963073	rs188267742	C	T	100	PASS	LDAF=0.0027;AA=C;THETA=0.0004;AN=2184;AVGPOST=0.9997;AC=6;VT=SNP;RSQ=0.9531;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.0027;AMR_AF=0.0028;AFR_AF=0.01	GT:DS:GL	0|0:0:-0,-4.4,-5	0|0:0:-0,-2.25,-5	0|0:0:-0,-2.23,-5	0|0:0:-0.05,-0.94,-5	0|0:0:-0.06,-0.87,-5
22	50963324	rs131809	ACCTGCACGACCTACCC	A	995	PASS	AC=591;AN=2184;ERATE=0.0009;VT=INDEL;LDAF=0.2599;THETA=0.0007;AVGPOST=0.9162;RSQ=0.8607;AF=0.27;ASN_AF=0.46;AMR_AF=0.3;AFR_AF=0.05;EUR_AF=0.25	GT:DS:GL	0|1:1:-13.6,0,-23.2	1|1:1.65:0,0,0	0|0:0:0,0,0	0|0:0:0,-0.3,-22.9	1|0:0.9:0,0,0
22	50963697	rs8136381	C	T	100	PASS	RSQ=0.9902;AA=C;THETA=0.0002;AN=2184;LDAF=0.0503;VT=SNP;AC=110;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.05;AMR_AF=0.02;AFR_AF=0.21	GT:DS:GL	0|0:0:-0.02,-1.44,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-2.36	0|0:0:-0.48,-0.48,-0.48
22	50964236	rs11479	G	A	100	PASS	ERATE=0.0004;AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;THETA=0.0005;VT=SNP;LDAF=0.1276;AC=278;AVGPOST=0.9978;RSQ=0.9921;AF=0.13;ASN_AF=0.25;AMR_AF=0.16;AFR_AF=0.03;EUR_AF=0.08	GT:DS:GL	0|0:0:-0.03,-1.23,-5	0|0:0:-0.08,-0.76,-3.7	0|0:0.1:-0.48,-0.48,-0.48	0|0:0:-0,-2.87,-5	0|0:0:-0.03,-1.19,-5
22	50964599	rs148641002	G	C	100	PASS	AA=g;SNPSOURCE=LOWCOV,EXOME;AN=2184;RSQ=0.8273;VT=SNP;ERATE=0.0011;LDAF=0.0225;AC=42;THETA=0.0003;AVGPOST=0.991;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.0041;EUR_AF=0.04	GT:DS:GL	0|0:0:-0.48,-0.48,-0.48	0|0:0.1:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	1|0:1:-4.7,-0.03,-1.21	0|1:1:-2.49,-0,-4
22	50964907	.	TGCGG	T	125	PASS	LDAF=0.0103;AN=2184;VT=INDEL;AVGPOST=0.9855;AC=9;ERATE=0.0011;RSQ=0.4406;THETA=0.001;AF=0.0041;ASN_AF=0.0035;AMR_AF=0.0028;AFR_AF=0.01;EUR_AF=0.004	GT:DS:GL	0|0:0.1:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0	0|0:0:0,0,0
22	50966173	.	G	A	100	PASS	AVGPOST=1;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=EXOME;RSQ=1;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50966352	rs114574956	C	T	100	PASS	ERATE=0.0004;AA=C;LDAF=0.0288;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=63;RSQ=0.9874;THETA=0.0003;AVGPOST=0.9992;AF=0.03;AMR_AF=0.01;AFR_AF=0.12	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.1,-0.7,-3.44	0|0:0:-0,-2.81,-5	0|0:0:-0,-4.4,-5
22	50966908	rs140329664	C	G	100	PASS	AA=C;THETA=0.0002;SNPSOURCE=LOWCOV,EXOME;AN=2184;VT=SNP;RSQ=0.9135;AC=1;ERATE=0.0003;AVGPOST=0.9999;LDAF=0.0005;AF=0.0005;AMR_AF=0.0028	GT:DS:GL	0|0:0:0,-5,-5	0|0:0:-0.01,-1.62,-5	0|0:0:-0,-4.7,-5	0|0:0:0,-5,-5	0|0:0:0,-5,-5
22	50970803	rs7292735	A	G	100	PASS	THETA=0.0009;ERATE=0.0004;AVGPOST=0.9945;RSQ=0.9761;AN=2184;LDAF=0.0748;VT=SNP;AA=A;AC=161;SNPSOURCE=LOWCOV;AF=0.07;AMR_AF=0.03;AFR_AF=0.3	GT:DS:GL	0|0:0:-0,-2.29,-5	0|0:0:-0.13,-0.61,-2.34	0|0:0:-0.45,-0.46,-0.53	0|0:0:-0.1,-0.71,-4.7	0|0:0:-0.03,-1.12,-5
22	50970996	rs74795169	C	T	100	PASS	AC=72;ERATE=0.0005;AA=C;AVGPOST=0.9983;AN=2184;VT=SNP;RSQ=0.9777;SNPSOURCE=LOWCOV;THETA=0.0007;LDAF=0.0331;AF=0.03;AMR_AF=0.01;AFR_AF=0.14	GT:DS:GL	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.45,-2.2	0|0:0:-0.2,-0.45,-2.13	0|0:0:-0.06,-0.92,-5	0|0:0:-0.19,-0.46,-2.16
22	50971197	rs187333359	G	A	100	PASS	ERATE=0.0004;RSQ=0.5934;LDAF=0.0021;AA=G;AN=2184;AVGPOST=0.9979;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;AC=3;AF=0.0014;AMR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.09,-5	0|0:0:-0,-3.36,-5	0|0:0:-0.01,-1.79,-5	0|0:0:-0.18,-0.48,-2.2	0|0:0:-0,-3.85,-5
22	50971266	rs140522	T	C	100	PASS	THETA=0.0015;AA=T;AN=2184;AC=1362;ERATE=0.0009;RSQ=0.993;LDAF=0.6226;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9961;AF=0.62;ASN_AF=0.71;AMR_AF=0.62;AFR_AF=0.47;EUR_AF=0.66	GT:DS:GL	1|1:2:-5,-1.16,-0.03	1|1:2:-5,-2.48,-0	0|0:0:-0,-2.86,-5	1|1:2:-5,-1.46,-0.02	1|1:2:-5,-3.12,-0
22	50971854	rs131792	G	A	100	PASS	ERATE=0.0005;AA=G;AN=2184;VT=SNP;LDAF=0.3382;RSQ=0.9802;SNPSOURCE=LOWCOV;AVGPOST=0.9881;AC=739;THETA=0.0003;AF=0.34;ASN_AF=0.47;AMR_AF=0.4;AFR_AF=0.08;EUR_AF=0.38	GT:DS:GL	0|1:1:-0.48,-0.48,-0.48	1|1:2:-3.03,-0.48,-0.17	0|0:0:-0.13,-0.58,-3.49	0|0:0:-0.1,-0.69,-4.1	1|0:1:-5,-0.01,-1.57
22	50972269	rs148419489	C	T	100	PASS	AC=7;ERATE=0.0004;LDAF=0.0036;AA=C;THETA=0.0002;AN=2184;VT=SNP;RSQ=0.8483;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AF=0.0032;ASN_AF=0.01	GT:DS:GL	0|0:0:-0,-2.48,-5	0|0:0:-0.01,-1.52,-5	0|0:0:-0,-2.98,-5	0|0:0:-0.01,-1.47,-5	0|0:0:-0.01,-1.51,-5
22	50972849	rs192615559	T	C	100	PASS	AA=T;AN=2184;THETA=0.0005;LDAF=0.001;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AC=2;RSQ=0.9547;AVGPOST=0.9999;AF=0.0009;AMR_AF=0.0028;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.05,-0.95,-5	0|0:0:-0,-2.09,-5	0|0:0:-0,-2.69,-5	0|0:0:-0.1,-0.69,-4.1	0|0:0:-0.05,-0.98,-5
22	50973913	rs146782584	C	T	100	PASS	ERATE=0.0004;AN=2184;THETA=0.0008;LDAF=0.001;VT=SNP;AA=c;RSQ=0.5025;AVGPOST=0.9989;SNPSOURCE=LOWCOV;AC=1;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0,-2.52,-5	0|0:0:-0,-4.22,-5	0|0:0:-0.06,-0.92,-5	0|0:0:-0.01,-1.83,-5
22	50975753	rs131789	G	A	100	PASS	AN=2184;LDAF=0.3364;VT=SNP;AA=A;THETA=0.0086;RSQ=0.988;SNPSOURCE=LOWCOV;AC=735;ERATE=0.0006;AVGPOST=0.9926;AF=0.34;ASN_AF=0.47;AMR_AF=0.4;AFR_AF=0.08;EUR_AF=0.38	GT:DS:GL	0|1:1:-5,0,-5	1|1:2:-5,-2.5,-0	0|0:0:-0,-2.05,-5	0|0:0:-0.1,-0.68,-4.4	1|0:1:-4.7,-0,-2.76
22	50975828	MERGED_DEL_2_107223	GGAAGACGAGACTGGGCGCTGTGGCTCATGCCTGTAATCGCGGCACTTTGGGAGGCCGAGGCAGGTAGATCACTTGCGGTCAGGAGTTGGAAACCAGCCTGGCCAACATAGTGAAAACCCATCTCTACTAAAAATACAAAATTAACCGGACTTGGTGTCAGGCACCTGTAATCCTAGCTACTTAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGACTGCACCACTGCACTCCAGCCTGGGGGACAGAGCGAGACTCTGTCACAAACAAACAAACAGCTCCTCAAATGAATATAAATATTTAATTCCAGTAAGATTTCCAATGTTAAAAATAGGAAAACACAAATTTAAAGTTCATATGCAAAAATGTGTTCAATTGTCAAAAAAATTCTAAAACAGGAAAAGAATAAAAGGGTTCTTAGGTATTAACCGCATGCGACAGTTAATTTGATGCACCAGGTTGGCTGGGCCACGCACCCCTGGCAGCTCTGTGCATTCCCGGCCCCTTCCTTGCTCCTGAAGCCCAGCCATCGCGGCATCTTTCTGCATTTGCTGCTTCTGAATCCCTTTGTGTCCTCTTTTCTTGACTTCCGCTGTTAACGTCATCTTACTAGGTAACGATTCGCTATGTTAATGTTTTTCCTGTTCACATTCCTGGTGTGGCTGTTCCCTTCTGTTTGGAACTAAGTCGTGATAGAGATTTTCGGAGGGGAAGATGAGAGAGGTTCGGTGAGTGTATCAGGCAGGGGTA	G	.	.	LDAF=0.0298;AN=2184;END=50976604;CIEND=-48,105;HOMLEN=3;THETA=0.0028;AVGPOST=0.982;CIPOS=-73,84;ERATE=0.0019;VT=SV;AC=50;SVLEN=-776;HOMSEQ=GAA;SVTYPE=DEL;RSQ=0.7649;AF=0.02;ASN_AF=0.0035;AMR_AF=0.01;AFR_AF=0.09	GT:DS:GL	0|0:0:-0,-3.9,-50.73	0|0:0.05:0,0,0	0|0:0.05:0,0,0	0|0:0:-0.44,-0.2,-4.87	0|0:0.05:0,0,0
22	50976025	rs186443036	A	G	100	PASS	ERATE=0.0005;AN=2184;THETA=0.0041;VT=SNP;AA=A;LDAF=0.0056;SNPSOURCE=LOWCOV;AVGPOST=0.9931;AC=11;RSQ=0.6605;AF=0.01;AMR_AF=0.0028;AFR_AF=0.02	GT:DS:GL	0|0:0:-0,-2.02,-5	0|0:0:-0.08,-0.76,-3.66	0|0:0:-0.21,-0.43,-1.86	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50976794	rs112188865	T	C	100	PASS	THETA=0.0061;RSQ=0.8318;AA=T;AN=2184;VT=SNP;AC=41;SNPSOURCE=LOWCOV;ERATE=0.0029;LDAF=0.0213;AVGPOST=0.991;AF=0.02;AMR_AF=0.0028;AFR_AF=0.08;EUR_AF=0.0026	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.19,-0.45,-2.21	0|0:0:-0.04,-1.04,-5	0|0:0:-0.18,-0.48,-2.21	0|0:0:-0.19,-0.46,-2.16
22	50977105	rs142338283	G	A	100	PASS	AA=G;AN=2184;VT=SNP;AC=23;RSQ=0.9775;THETA=0.0037;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;LDAF=0.0108;AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.08,-0.75,-5	0|0:0:-0.04,-1.05,-5	0|0:0:-0.04,-1.11,-5	0|0:0:-0.23,-0.42,-1.56	0|0:0:-0.07,-0.81,-5
22	50977511	rs57741614	C	T	100	PASS	LDAF=0.0368;AA=C;AN=2184;VT=SNP;AC=78;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0007;RSQ=0.9623;AVGPOST=0.9965;AF=0.04;AMR_AF=0.01;AFR_AF=0.15	GT:DS:GL	0|0:0:-0,-2.69,-5	0|0:0.15:-0.05,-0.96,-5	0|0:0:-0.06,-0.88,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.12,-0.62,-3.85
22	50977914	rs150445995	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;VT=SNP;RSQ=0.8415;AVGPOST=0.9998;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0,-3,-5	0|0:0:-0,-2.49,-5	0|0:0:-0,-2.76,-5	0|0:0:-0.03,-1.16,-5	0|0:0:-0.01,-1.6,-5
22	50978228	rs117388248	G	A	100	PASS	AC=12;ERATE=0.0004;RSQ=0.9105;THETA=0.0002;AA=G;AN=2184;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;LDAF=0.0055;AF=0.01;AMR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0,-2.35,-5	0|0:0:-0,-3.62,-5	0|0:0:-0.01,-1.49,-5	0|0:0:-0.02,-1.42,-5	0|0:0:-0,-4,-5
22	50978372	rs181829164	A	G	100	PASS	RSQ=0.6107;AVGPOST=0.9994;THETA=0.0022;AN=2184;VT=SNP;AA=A;LDAF=0.0007;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;AF=0.0005;ASN_AF=0.0017	GT:DS:GL	0|0:0:-0.1,-0.7,-4.7	0|0:0:-0,-2.52,-5	0|0:0:-0.01,-1.82,-5	0|0:0:-0.03,-1.22,-5	0|0:0:-0.11,-0.64,-4.1
22	50978942	rs57187251	TC	T	130	PASS	THETA=0.0014;AN=2184;AC=283;VT=INDEL;RSQ=0.9508;AVGPOST=0.984;ERATE=0.0007;LDAF=0.1278;AF=0.13;ASN_AF=0.25;AMR_AF=0.15;AFR_AF=0.04;EUR_AF=0.09	GT:DS:GL	0|0:0:0,-0.9,-13	0|0:0:0,-0.3,-4.3	0|0:0:0,-0.3,-4.3	0|0:0:0,0,0	1|0:0.9:0,0,0
22	50980535	rs143766780	A	G	100	PASS	ERATE=0.0005;LDAF=0.043;THETA=0.0032;AC=94;RSQ=0.9678;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AA=a;AVGPOST=0.996;AF=0.04;AMR_AF=0.01;AFR_AF=0.18	GT:DS:GL	0|0:0:-0.01,-1.47,-5	0|0:0:-0.24,-0.44,-1.16	0|0:0:-0.09,-0.74,-3.59	0|0:0:-0.02,-1.4,-5	0|0:0:-0.12,-0.62,-3.85
22	50981121	rs144585112	C	T	100	PASS	ERATE=0.0004;AA=C;AN=2184;RSQ=0.6908;THETA=0.0005;LDAF=0.0015;VT=SNP;AVGPOST=0.9988;SNPSOURCE=LOWCOV;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.06,-0.92,-5	0|0:0:-0.04,-1.06,-5	0|0:0:-0.03,-1.17,-5	0|0:0:-0.03,-1.18,-5	0|0:0:-0,-2.32,-5
22	50981678	rs5770876	T	C	100	PASS	RSQ=0.9608;AA=T;AN=2184;VT=SNP;ERATE=0.001;AC=315;LDAF=0.1458;AVGPOST=0.9872;SNPSOURCE=LOWCOV;THETA=0.0003;AF=0.14;ASN_AF=0.27;AMR_AF=0.17;AFR_AF=0.05;EUR_AF=0.1	GT:DS:GL	0|0:0:-0.1,-0.68,-4.7	0|0:0:-0.04,-1.06,-5	0|0:0:-0.08,-0.8,-5	0|0:0:-0.48,-0.48,-0.48	1|0:0.95:-0.48,-0.48,-0.48
22	50981796	rs115986675	G	A	100	PASS	LDAF=0.0132;AA=G;AN=2184;RSQ=0.9292;VT=SNP;THETA=0.0046;SNPSOURCE=LOWCOV;AC=27;AVGPOST=0.9978;ERATE=0.0007;AF=0.01;AMR_AF=0.01;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0.07,-0.83,-5	0|0:0:-0,-2.28,-5	0|0:0:-0.05,-0.93,-5	0|0:0:-0.18,-0.47,-3.07
22	50983332	rs6009920	C	G	100	PASS	THETA=0.0021;ERATE=0.0005;AA=C;AN=2184;RSQ=0.9814;VT=SNP;AC=198;SNPSOURCE=LOWCOV;LDAF=0.0906;AVGPOST=0.996;AF=0.09;AMR_AF=0.07;AFR_AF=0.13;EUR_AF=0.14	GT:DS:GL	0|0:0:-0,-3.18,-5	0|0:0:-0.07,-0.85,-4.4	0|0:0:-0.02,-1.26,-5	0|0:0:-0.06,-0.9,-5	0|1:0.6:-0.11,-0.64,-4
22	50985023	rs117961389	C	A	100	PASS	LDAF=0.0894;AA=C;AC=182;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;ERATE=0.0012;RSQ=0.8828;AVGPOST=0.9764;AF=0.08;ASN_AF=0.03;AMR_AF=0.06;AFR_AF=0.08;EUR_AF=0.14	GT:DS:GL	1|0:0.95:-0.48,-0.48,-0.48	0|0:0:-0.12,-0.61,-3.19	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.19,-0.46,-2.42	0|1:1:-0.48,-0.48,-0.48
22	50985471	rs193226068	G	A	100	PASS	THETA=0.0021;AA=G;AN=2184;ERATE=0.0046;RSQ=0.2975;VT=SNP;AVGPOST=0.9024;LDAF=0.0592;SNPSOURCE=LOWCOV;AC=39;AF=0.02;ASN_AF=0.02;AMR_AF=0.01;AFR_AF=0.05;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.18,-0.47,-2.41	0|0:0.25:-0.48,-0.48,-0.48	0|0:0.1:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48
22	50985872	rs150330569	G	T	100	PASS	RSQ=0.4571;LDAF=0.0152;THETA=0.0026;ERATE=0.0013;AC=18;AA=g;AN=2184;AVGPOST=0.9797;VT=SNP;SNPSOURCE=LOWCOV;AF=0.01;AMR_AF=0.01;AFR_AF=0.01;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.16,-0.51,-2.89	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0.06,-0.89,-5	0|0:0:-0.18,-0.47,-3.06
22	50985875	rs6009988	T	C	100	PASS	THETA=0.0047;AN=2184;AC=569;VT=SNP;RSQ=0.9238;AA=c;LDAF=0.2655;ERATE=0.0018;SNPSOURCE=LOWCOV;AVGPOST=0.9622;AF=0.26;ASN_AF=0.28;AMR_AF=0.24;AFR_AF=0.31;EUR_AF=0.22	GT:DS:GL	0|0:0:-0.35,-0.41,-0.78	0|0:0.05:-0.48,-0.48,-0.48	0|0:0:-0.48,-0.48,-0.48	0|0:0.35:-0.11,-0.66,-4.4	0|1:1.45:-3.34,-0.46,-0.18
22	50989742	rs55829948	C	T	100	PASS	AA=C;AN=2184;VT=SNP;AC=10;RSQ=0.8956;AVGPOST=0.9988;SNPSOURCE=LOWCOV;ERATE=0.0003;LDAF=0.0051;THETA=0.0003;AF=0.0046;AFR_AF=0.002;EUR_AF=0.01	GT:DS:GL	0|0:0:-0.16,-0.52,-3.12	0|0:0:0,-5,-5	0|0:0:0,-5,-5	0|0:0:-0.05,-0.99,-5	0|0:0:-0.06,-0.88,-5
22	50990468	rs183014248	G	T	100	PASS	AA=G;AN=2184;VT=SNP;AVGPOST=0.9998;RSQ=0.8148;SNPSOURCE=LOWCOV;AC=1;ERATE=0.0003;LDAF=0.0005;THETA=0.0003;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0,-2.29,-5	0|0:0:-0.01,-1.58,-5	0|0:0:-0,-2,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0.04,-1.11,-5
22	50990573	rs73443386	T	A	100	PASS	AC=35;LDAF=0.016;AA=T;AN=2184;RSQ=0.9771;VT=SNP;THETA=0.0006;AVGPOST=0.9989;SNPSOURCE=LOWCOV;ERATE=0.0003;AF=0.02;AMR_AF=0.01;AFR_AF=0.07	GT:DS:GL	0|0:0:-0.01,-1.71,-5	0|0:0:-0,-2.59,-5	0|0:0:-0,-2.84,-5	0|0:0:-0.18,-0.48,-2.21	0|0:0:-0.01,-1.84,-5
22	50990800	rs12159009	G	A	100	PASS	ERATE=0.0004;THETA=0.0004;AA=G;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;RSQ=0.5364;AVGPOST=0.9984;LDAF=0.0012;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.02,-1.45,-5	0|0:0:-0.12,-0.62,-3.15	0|0:0:-0.22,-0.46,-1.26	0|0:0:-0.04,-1.08,-5	0|0:0:-0.04,-1.07,-5
22	50991040	rs6520152	C	G	100	PASS	AA=C;AN=2184;LDAF=0.0093;AC=20;RSQ=0.9829;VT=SNP;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0.01,-1.48,-5	0|0:0:-0.07,-0.84,-5	0|0:0:-0,-2.55,-5	0|0:0:-0.02,-1.44,-5	0|0:0:-0.07,-0.84,-5
22	50991098	rs77960869	T	C	100	PASS	AA=T;AN=2184;VT=SNP;AVGPOST=0.9991;LDAF=0.002;SNPSOURCE=LOWCOV;AC=4;ERATE=0.0003;RSQ=0.8978;THETA=0.0003;AF=0.0018;ASN_AF=0.01;EUR_AF=0.0013	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.07,-0.84,-5	0|0:0:-0,-2.59,-5	0|0:0:-0,-2.55,-5	0|0:0:-0,-2.85,-5
22	50991119	rs192670834	C	T	100	PASS	AA=C;AVGPOST=0.9994;RSQ=0.692;AN=2184;VT=SNP;SNPSOURCE=LOWCOV;AC=1;THETA=0.001;ERATE=0.0003;LDAF=0.0008;AF=0.0005;AFR_AF=0.002	GT:DS:GL	0|0:0:-0.05,-0.93,-5	0|0:0:-0.02,-1.3,-5	0|0:0:-0,-2.02,-5	0|0:0:-0,-2.89,-5	0|0:0:-0,-2.87,-5
22	50991158	rs148746288	T	C	100	PASS	AA=T;AN=2184;LDAF=0.004;VT=SNP;AC=9;RSQ=0.9617;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9995;THETA=0.0003;AF=0.0041;ASN_AF=0.01;AMR_AF=0.01;AFR_AF=0.002;EUR_AF=0.004	GT:DS:GL	0|0:0:-0.03,-1.21,-5	0|0:0:-0.01,-1.79,-5	0|0:0:-0.01,-1.57,-5	0|0:0:-0,-3.18,-5	0|0:0:-0.01,-1.61,-5
22	50991787	rs76081526	G	A	100	PASS	ERATE=0.0004;AVGPOST=0.9963;RSQ=0.9831;AA=g;AN=2184;THETA=0.0008;VT=SNP;SNPSOURCE=LOWCOV;AC=180;LDAF=0.0833;AF=0.08;AMR_AF=0.04;AFR_AF=0.23;EUR_AF=0.07	GT:DS:GL	0|0:0:-0,-2.02,-5	0|0:0:-0.02,-1.43,-5	0|0:0:-0,-2.37,-5	0|0:0:-0.19,-0.47,-2.08	0|0:0:-0.01,-1.82,-5
22	50992169	rs10428040	G	A	100	PASS	ERATE=0.0004;THETA=0.0002;LDAF=0.0127;AA=G;AN=2184;AC=26;VT=SNP;RSQ=0.9541;SNPSOURCE=LOWCOV;AVGPOST=0.9984;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.01,-1.75,-5	0|0:0:-0.05,-0.99,-5	0|0:0:-0.02,-1.29,-5	0|0:0:-0.2,-0.44,-2.12	0|0:0:-0.07,-0.82,-5
22	50993274	rs141201550	A	G	100	PASS	THETA=0.0009;AVGPOST=0.9933;AN=2184;LDAF=0.0117;AC=20;VT=SNP;RSQ=0.7651;SNPSOURCE=LOWCOV;AA=a;ERATE=0.0006;AF=0.01;AMR_AF=0.02;EUR_AF=0.02	GT:DS:GL	0|0:0:-0.05,-0.94,-5	0|0:0:-0.14,-0.57,-3.47	0|0:0:-0.08,-0.77,-5	0|0:0:-0.18,-0.48,-2.21	0|0:0:-0.2,-0.45,-2.1
22	50993746	rs185908472	G	A	100	PASS	ERATE=0.0004;LDAF=0.0016;THETA=0.0004;AA=G;AN=2184;RSQ=0.8455;VT=SNP;SNPSOURCE=LOWCOV;AVGPOST=0.9995;AC=3;AF=0.0014;AFR_AF=0.01	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0,-2.8,-5	0|0:0:-0,-2.32,-5	0|0:0:-0.06,-0.91,-5	0|0:0:-0.07,-0.85,-5
22	50994176	rs183803476	T	A	100	PASS	AA=T;AN=2184;AVGPOST=0.9972;VT=SNP;AC=9;LDAF=0.0044;SNPSOURCE=LOWCOV;RSQ=0.7582;ERATE=0.0003;THETA=0.0003;AF=0.0041;AFR_AF=0.02	GT:DS:GL	0|0:0:-0.03,-1.2,-5	0|0:0:-0,-2.38,-5	0|0:0:-0,-2.05,-5	0|0:0:-0.05,-0.97,-5	0|0:0:-0.06,-0.86,-5
22	50994522	rs116679391	G	A	100	PASS	THETA=0.0004;AA=G;AN=2184;AC=20;LDAF=0.0098;VT=SNP;RSQ=0.9395;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;AF=0.01;AFR_AF=0.04	GT:DS:GL	0|0:0:-0.03,-1.15,-5	0|0:0:-0.02,-1.44,-5	0|0:0:-0,-1.95,-5	0|0:0:-0.1,-0.67,-3.92	0|0:0:-0.08,-0.79,-5
22	50996333	rs187960891	C	T	100	PASS	AA=C;RSQ=0.6269;AN=2184;VT=SNP;THETA=0.0006;SNPSOURCE=LOWCOV;ERATE=0.0003;AVGPOST=0.9987;LDAF=0.0012;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0.01,-1.49,-5	0|0:0:-0,-2.55,-5	0|0:0:-0,-3.24,-5	0|0:0:-0.1,-0.68,-4.4	0|0:0:-0.01,-1.82,-5
22	50996710	rs6010003	G	A	100	PASS	ERATE=0.0004;AA=G;AN=2184;AC=26;AVGPOST=0.9981;VT=SNP;THETA=0.0011;RSQ=0.9394;SNPSOURCE=LOWCOV;LDAF=0.0128;AF=0.01;AMR_AF=0.0028;AFR_AF=0.05	GT:DS:GL	0|0:0:-0.03,-1.19,-5	0|0:0:-0.12,-0.62,-4	0|0:0:-0.14,-0.57,-3.44	0|0:0:-0.06,-0.86,-5	0|0:0:-0.48,-0.48,-0.48
22	50996979	rs189579099	A	G	100	PASS	ERATE=0.0004;LDAF=0.0013;RSQ=0.5896;AVGPOST=0.9983;AN=2184;VT=SNP;AA=A;SNPSOURCE=LOWCOV;THETA=0.0007;AC=2;AF=0.0009;AFR_AF=0.0041	GT:DS:GL	0|0:0:-0,-3.11,-5	0|0:0:-0.07,-0.83,-5	0|0:0:-0,-2.77,-5	0|0:0:-0.06,-0.89,-5	0|0:0:-0,-3.01,-5
22	50998093	rs6009930	G	C	100	PASS	ERATE=0.0004;AA=C;AN=2184;RSQ=0.9895;VT=SNP;LDAF=0.0632;AC=138;THETA=0.0012;SNPSOURCE=LOWCOV;AVGPOST=0.9982;AF=0.06;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.22;EUR_AF=0.03	GT:DS:GL	0|0:0:-0.02,-1.46,-5	0|0:0:-0,-2.53,-5	0|0:0:-0,-2.52,-5	0|0:0:-0.48,-0.48,-0.48	0|0:0:-0,-2.08,-5
22	50999182	rs140518	C	T	100	PASS	ERATE=0.0005;AA=T;AN=2184;RSQ=0.9895;LDAF=0.772;VT=SNP;THETA=0.0011;AC=1687;SNPSOURCE=LOWCOV;AVGPOST=0.9949;AF=0.77;ASN_AF=0.97;AMR_AF=0.75;AFR_AF=0.68;EUR_AF=0.69	GT:DS:GL	1|1:2:-3.06,-0.46,-0.18	1|1:2:-5,-2.49,-0	0|0:0:-0,-2.79,-5	1|0:1:-5,0,-5	1|1:2:-5,-2.51,-0
22	50999502	rs9628212	G	A	100	PASS	ERATE=0.0004;RSQ=0.9966;AN=2184;AC=159;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0013;AA=a;AVGPOST=0.9995;LDAF=0.0731;AF=0.07;ASN_AF=0.01;AMR_AF=0.03;AFR_AF=0.18;EUR_AF=0.08	GT:DS:GL	0|0:0:-0.01,-1.51,-5	0|0:0:-0.01,-1.54,-5	0|0:0:-0,-2.25,-5	0|0:0:-0.09,-0.72,-4.7	0|0:0:-0.03,-1.25,-5