# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "grangers"
version = "0.4.0"
authors = [
    "Dongze He <dhe17@umd.edu>",
    "Rob Patro <rob@cs.umd.edu>",
]
include = [
    "/src/lib.rs",
    "/src/grangers_info.rs",
    "/src/grangers_utils.rs",
    "/src/options.rs",
    "/src/reader.rs",
    "/src/reader/*.rs",
    "/Cargo.toml",
    "/Cargo.lock",
    "/README.md",
    "/LICENSE",
]
description = "A rust library for working with genomic ranges and annotations."
homepage = "https://github.com/COMBINE-lab/grangers"
readme = "README.md"
keywords = [
    "genomics",
    "GTF-GFF",
    "ranges",
    "genes",
    "genome-annotation",
]
categories = [
    "science",
    "data-structures",
]
license-file = "LICENSE"
repository = "https://github.com/COMBINE-lab/grangers"

[dependencies.anyhow]
version = "1.0"

[dependencies.clap]
version = "4.4.7"
features = [
    "derive",
    "cargo",
    "deprecated",
    "wrap_help",
    "help",
    "usage",
    "error-context",
]

[dependencies.flate2]
version = "1.0.28"
features = ["zlib"]
default-features = false

[dependencies.lazy_static]
version = "1.4.0"

[dependencies.noodles]
version = "0.56.0"
features = [
    "gtf",
    "gff",
    "fasta",
    "core",
]

[dependencies.nutype]
version = "0.3.1"

[dependencies.peak_alloc]
version = "0.2.0"

[dependencies.polars]
version = "0.34.2"
features = [
    "lazy",
    "dataframe_arithmetic",
    "sort_multiple",
    "checked_arithmetic",
    "rows",
    "dtype-struct",
    "dtype-categorical",
    "list_eval",
    "concat_str",
    "strings",
    "is_in",
    "abs",
]

[dependencies.rust-lapper]
version = "1.1.0"

[dependencies.tracing]
version = "0.1.40"

[dependencies.tracing-subscriber]
version = "0.3.17"
features = ["env-filter"]
default-features = true