# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
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# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
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# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "granges"
version = "0.2.2"
authors = ["Vince Buffalo <vsbuffalo@gmail.com>"]
description = "A Rust library and command line tool for genomic range operations."
documentation = "https://docs.rs/granges/"
readme = "README.md"
keywords = [
    "genomics",
    "bioinformatics",
    "compbio",
]
categories = ["science"]
license = "MIT"
repository = "https://github.com/vsbuffalo/granges"

[profile.dev]
opt-level = 1

[profile.release]
opt-level = 3
lto = true

[[bin]]
name = "granges"
path = "src/main/mod.rs"

[[bench]]
name = "bedtools_comparison"
harness = false

[[bench]]
name = "io"
harness = false

[dependencies.bytes]
version = "1.5.0"

[dependencies.clap]
version = "4.4.18"
features = [
    "derive",
    "wrap_help",
]

[dependencies.coitrees]
version = "0.4.0"
features = ["nosimd"]

[dependencies.csv]
version = "1.3.0"

[dependencies.flate2]
version = "1.0.28"
features = ["zlib-ng-compat"]

[dependencies.genomap]
version = "0.2.6"

[dependencies.indexmap]
version = "2.2.3"

[dependencies.lazy_static]
version = "1.4.0"

[dependencies.ndarray]
version = "0.15.6"
optional = true

[dependencies.ndarray-npy]
version = "0.8.1"
optional = true

[dependencies.noodles]
version = "0.63.0"
features = [
    "core",
    "bed",
    "fasta",
]

[dependencies.num-traits]
version = "0.2.18"

[dependencies.polars]
version = "0.37.0"
optional = true

[dependencies.rand]
version = "0.8.5"

[dependencies.serde]
version = "1.0.197"
features = ["derive"]

[dependencies.tempfile]
version = "3.10.0"

[dependencies.thiserror]
version = "1.0.57"

[dev-dependencies.criterion]
version = "0.5.1"
features = ["html_reports"]

[features]
bench-big = []
big-position = []
dev-commands = []
ndarray = [
    "dep:ndarray",
    "dep:ndarray-npy",
]
polars = ["dep:polars"]