/* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- * * $Id$ * * Copyright (c) 2009-2014, Erik Lindahl & David van der Spoel * All rights reserved. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1. Redistributions of source code must retain the above copyright notice, this * list of conditions and the following disclaimer. * * 2. Redistributions in binary form must reproduce the above copyright notice, * this list of conditions and the following disclaimer in the documentation * and/or other materials provided with the distribution. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ #include #include "xdrfile.h" #include "xdrfile_xtc.h" #define MAGIC 1995 enum { FALSE, TRUE }; static int xtc_header(XDRFILE *xd, int *natoms, int *step, float *time, mybool bRead) { int result, magic, n = 1; /* Note: read is same as write. He he he */ magic = MAGIC; if ((result = xdrfile_write_int(&magic, n, xd)) != n) { if (bRead) return exdrENDOFFILE; else return exdrINT; } if (magic != MAGIC) return exdrMAGIC; if ((result = xdrfile_write_int(natoms, n, xd)) != n) return exdrINT; if ((result = xdrfile_write_int(step, n, xd)) != n) return exdrINT; if ((result = xdrfile_write_float(time, n, xd)) != n) return exdrFLOAT; return exdrOK; } static int xtc_coord(XDRFILE *xd, int *natoms, matrix box, rvec *x, float *prec, mybool bRead) { int result; /* box */ result = xdrfile_read_float(box[0], DIM * DIM, xd); if (DIM * DIM != result) return exdrFLOAT; else { if (bRead) { result = xdrfile_decompress_coord_float(x[0], natoms, prec, xd); if (result != *natoms) return exdr3DX; } else { result = xdrfile_compress_coord_float(x[0], *natoms, *prec, xd); if (result != *natoms) return exdr3DX; } } return exdrOK; } int read_xtc_natoms(const char *fn, int *natoms) { XDRFILE *xd; int step, result; float time; xd = xdrfile_open(fn, "r"); if (NULL == xd) return exdrFILENOTFOUND; result = xtc_header(xd, natoms, &step, &time, TRUE); xdrfile_close(xd); return result; } int read_xtc(XDRFILE *xd, int natoms, int *step, float *time, matrix box, rvec *x, float *prec) /* Read subsequent frames */ { int result; if ((result = xtc_header(xd, &natoms, step, time, TRUE)) != exdrOK) return result; if ((result = xtc_coord(xd, &natoms, box, x, prec, 1)) != exdrOK) return result; return exdrOK; } int write_xtc(XDRFILE *xd, int natoms, int step, float time, matrix box, rvec *x, float prec) /* Write a frame to xtc file */ { int result; if ((result = xtc_header(xd, &natoms, &step, &time, FALSE)) != exdrOK) return result; if ((result = xtc_coord(xd, &natoms, box, x, &prec, 0)) != exdrOK) return result; return exdrOK; }