/* movstat/gsl_movstat.h * * Copyright (C) 2018 Patrick Alken * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 3 of the License, or (at * your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. */ #ifndef __GSL_MOVSTAT_H__ #define __GSL_MOVSTAT_H__ #include #include #undef __BEGIN_DECLS #undef __END_DECLS #ifdef __cplusplus # define __BEGIN_DECLS extern "C" { # define __END_DECLS } #else # define __BEGIN_DECLS /* empty */ # define __END_DECLS /* empty */ #endif __BEGIN_DECLS typedef enum { GSL_MOVSTAT_END_PADZERO, GSL_MOVSTAT_END_PADVALUE, GSL_MOVSTAT_END_TRUNCATE } gsl_movstat_end_t; /* accumulator struct * size - return number of bytes needed for accumulator with maximum of n elements * init - initialize accumulator state * insert - insert a single sample into accumulator; if there are already n * samples in accumulator, oldest sample is overwritten * delete_oldest - delete oldest sample from accumulator * get - return accumulated value */ typedef struct { size_t (*size) (const size_t n); int (*init) (const size_t n, void * vstate); int (*insert) (const double x, void * vstate); int (*delete_oldest) (void * vstate); int (*get) (void * params, double * result, const void * vstate); } gsl_movstat_accum; typedef struct { double (* function) (const size_t n, double x[], void * params); void * params; } gsl_movstat_function; #define GSL_MOVSTAT_FN_EVAL(F,n,x) (*((F)->function))((n),(x),(F)->params) /* workspace for moving window statistics */ typedef struct { size_t H; /* number of previous samples in window */ size_t J; /* number of after samples in window */ size_t K; /* window size K = H + J + 1 */ double *work; /* workspace, size K */ void *state; /* state workspace for various accumulators */ size_t state_size; /* bytes allocated for 'state' */ } gsl_movstat_workspace; /* alloc.c */ gsl_movstat_workspace *gsl_movstat_alloc(const size_t K); gsl_movstat_workspace *gsl_movstat_alloc2(const size_t H, const size_t J); gsl_movstat_workspace *gsl_movstat_alloc_with_size(const size_t accum_state_size, const size_t H, const size_t J); void gsl_movstat_free(gsl_movstat_workspace * w); /* apply.c */ int gsl_movstat_apply_accum(const gsl_movstat_end_t endtype, const gsl_vector * x, const gsl_movstat_accum * accum, void * accum_params, gsl_vector * y, gsl_vector * z, gsl_movstat_workspace * w); int gsl_movstat_apply(const gsl_movstat_end_t endtype, const gsl_movstat_function * F, const gsl_vector * x, gsl_vector * y, gsl_movstat_workspace * w); /* fill.c */ size_t gsl_movstat_fill(const gsl_movstat_end_t endtype, const gsl_vector * x, const size_t idx, const size_t H, const size_t J, double * window); int gsl_movstat_mean(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * y, gsl_movstat_workspace * w); int gsl_movstat_variance(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * y, gsl_movstat_workspace * w); int gsl_movstat_sd(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * y, gsl_movstat_workspace * w); int gsl_movstat_median(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * y, gsl_movstat_workspace * w); int gsl_movstat_min(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * y, gsl_movstat_workspace * w); int gsl_movstat_max(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * y, gsl_movstat_workspace * w); int gsl_movstat_minmax(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * y_min, gsl_vector * y_max, gsl_movstat_workspace * w); int gsl_movstat_mad0(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * xmedian, gsl_vector * xmad, gsl_movstat_workspace * w); int gsl_movstat_mad(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * xmedian, gsl_vector * xmad, gsl_movstat_workspace * w); int gsl_movstat_qqr(const gsl_movstat_end_t endtype, const gsl_vector * x, const double q, gsl_vector * xqqr, gsl_movstat_workspace * w); int gsl_movstat_Sn(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * xscale, gsl_movstat_workspace * w); int gsl_movstat_Qn(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * xscale, gsl_movstat_workspace * w); int gsl_movstat_sum(const gsl_movstat_end_t endtype, const gsl_vector * x, gsl_vector * y, gsl_movstat_workspace * w); /* accumulator variables */ GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_mad; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_max; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_mean; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_median; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_min; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_minmax; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_sd; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_Sn; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_sum; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_Qn; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_qqr; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_userfunc; GSL_VAR const gsl_movstat_accum * gsl_movstat_accum_variance; __END_DECLS #endif /* __GSL_MOVSTAT_H__ */