/* spdgemm.c * * Copyright (C) 2014 Patrick Alken * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 3 of the License, or (at * your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. */ #include #include #include #include #include #include /* gsl_spblas_dgemm() Multiply two sparse matrices Inputs: alpha - scalar factor A - sparse matrix B - sparse matrix C - (output) C = alpha * A * B Return: success or error Notes: 1) based on CSparse routine cs_multiply */ int gsl_spblas_dgemm(const double alpha, const gsl_spmatrix *A, const gsl_spmatrix *B, gsl_spmatrix *C) { if (A->size2 != B->size1 || A->size1 != C->size1 || B->size2 != C->size2) { GSL_ERROR("matrix dimensions do not match", GSL_EBADLEN); } else if (A->sptype != B->sptype || A->sptype != C->sptype) { GSL_ERROR("matrix storage formats do not match", GSL_EINVAL); } else if (!GSL_SPMATRIX_ISCCS(A)) { GSL_ERROR("compressed column format required", GSL_EINVAL); } else { int status = GSL_SUCCESS; const size_t M = A->size1; const size_t N = B->size2; int *Bi = B->i; int *Bp = B->p; double *Bd = B->data; int *w = A->work.work_int; /* workspace of length M */ double *x = C->work.work_atomic; /* workspace of length M */ int *Cp, *Ci; double *Cd; size_t j; int p; size_t nz = 0; if (C->nzmax < A->nz + B->nz) { status = gsl_spmatrix_realloc(A->nz + B->nz, C); if (status) { GSL_ERROR("unable to realloc matrix C", status); } } /* initialize workspace to 0 */ for (j = 0; j < M; ++j) w[j] = 0; Cp = C->p; Ci = C->i; Cd = C->data; for (j = 0; j < N; ++j) { if (nz + M > C->nzmax) { status = gsl_spmatrix_realloc(2 * C->nzmax + M, C); if (status) { GSL_ERROR("unable to realloc matrix C", status); } /* these pointers could have changed due to reallocation */ Ci = C->i; Cd = C->data; } Cp[j] = nz; /* column j of C starts here */ for (p = Bp[j]; p < Bp[j + 1]; ++p) { nz = gsl_spblas_scatter(A, Bi[p], Bd[p], w, x, (int) (j + 1), C, nz); } for (p = Cp[j]; p < (int) nz; ++p) Cd[p] = x[Ci[p]]; } Cp[N] = nz; C->nz = nz; /* scale by alpha */ gsl_spmatrix_scale(C, alpha); return status; } } /* gsl_spblas_dgemm() */ /* gsl_spblas_scatter() Keep a running total x -> x + alpha*A(:,j) for adding matrices together in CCS, which will eventually be stored in C(:,j) When a new non-zero element with row index i is found, update C->i with the row index. C->data is updated only by the calling function after all matrices have been added via this function. Inputs: A - sparse matrix m-by-n j - column index alpha - scalar factor w - keeps track which rows of column j have been added to C; initialize to 0 prior to first call x - column vector of length m mark - C - output matrix whose jth column will be added to A(:,j) nz - (input/output) number of non-zeros in matrix C Notes: 1) This function is designed to be called successively when adding multiple matrices together. Column j of C is stored contiguously as per CCS but not necessarily in order - ie: the row indices C->i may not be in ascending order. 2) based on CSparse routine cs_scatter */ size_t gsl_spblas_scatter(const gsl_spmatrix *A, const size_t j, const double alpha, int *w, double *x, const int mark, gsl_spmatrix *C, size_t nz) { int p; int *Ai = A->i; int *Ap = A->p; double *Ad = A->data; int *Ci = C->i; for (p = Ap[j]; p < Ap[j + 1]; ++p) { size_t i = Ai[p]; /* A(i,j) is nonzero */ if (w[i] < mark) /* check if row i has been stored in column j yet */ { w[i] = mark; /* i is new entry in column j */ Ci[nz++] = i; /* add i to pattern of C(:,j) */ x[i] = alpha * Ad[p]; /* x(i) = alpha * A(i,j) */ } else /* this (i,j) exists in C from a previous call */ { x[i] += alpha * Ad[p]; /* add alpha*A(i,j) to C(i,j) */ } } return (nz) ; } /* gsl_spblas_scatter() */