# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "haptk"
version = "0.3.2"
authors = ["Osma S. Rautila"]
build = false
include = [
    "src/**/*.rs",
    "../LICENSE",
    "../README.md",
    "../CHANGELOG.md",
    "Cargo.toml",
    "Cargo.lock",
]
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "HAPTK - Haplotype analysis toolkit"
homepage = "https://github.com/xosxos/haptk"
readme = "README.md"
license = "GPL-3.0-only"
repository = "https://github.com/xosxos/haptk"

[lib]
name = "haptk"
crate-type = [
    "cdylib",
    "rlib",
]
path = "src/lib.rs"
doctest = false

[[bin]]
name = "haptk"
path = "src/bin.rs"
test = true
doctest = false
bench = false

[dependencies.alphanumeric-sort]
version = "1.5"

[dependencies.anstyle]
version = "1.0.7"
optional = true

[dependencies.bgzip]
version = "0.3"

[dependencies.bio]
version = "2.0"

[dependencies.chrono]
version = "0.4.38"

[dependencies.clap]
version = "=4.4.18"
features = ["derive"]
optional = true

[dependencies.color-eyre]
version = "0.6"

[dependencies.csv]
version = "1.3"

[dependencies.fishers_exact]
version = "1.0.1"
optional = true

[dependencies.image]
version = "0.25"
features = ["png"]
default-features = false

[dependencies.indexmap]
version = "2.6"
features = ["serde"]

[dependencies.itertools]
version = "0.13"

[dependencies.ndarray]
version = "0.16"
features = [
    "rayon",
    "blas",
    "serde",
]

[dependencies.ndarray-npy]
version = "0.9"
default-features = false

[dependencies.niffler]
version = "2.6"

[dependencies.petgraph]
version = "0.6"
features = ["serde-1"]
default-features = false

[dependencies.polars]
version = "=0.33.2"
features = [
    "lazy",
    "is_in",
    "csv",
    "fmt",
    "serde",
]
optional = true
default-features = false

[dependencies.rand]
version = "0.8.5"

[dependencies.rayon]
version = "1.10"

[dependencies.rust-htslib]
version = "0.44"
features = ["bzip2"]
default-features = false

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.serde_with]
version = "3.11"
optional = true

[dependencies.statrs]
version = "0.16"
default-features = false

[dependencies.svg]
version = "0.13"

[dependencies.termion]
version = "4.0"

[dependencies.time]
version = "0.3"
features = ["local-offset"]
default-features = false

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-appender]
version = "0.2"

[dependencies.tracing-subscriber]
version = "0.3"
features = [
    "std",
    "fmt",
    "time",
    "ansi",
]
default-features = false

[dev-dependencies.insta]
version = "1.26.0"
features = ["yaml"]
default-features = false

[features]
clap = [
    "dep:clap",
    "dep:anstyle",
]
default = ["clap"]
experimental = [
    "clap",
    "dep:fishers_exact",
    "dep:polars",
    "dep:serde_with",
]