# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- 2 - TR - 2 317 338944 339292 338943 339292 133811386 + 1.9e-37 136.7 1.4 unmasked:chromosome primary_assembly:daLinVulg1.1:2:1:133811386:1 6 - TR - 2 317 61501865 61501510 61501866 61501510 110092459 - 4.7e-33 122.3 1.2 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 142 317 62615451 62615652 62615428 62615652 110092459 + 4.9e-16 66.5 1.2 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 4 - TR - 117 313 79789793 79790022 79789778 79790024 120922496 + 6.4e-11 49.7 2.8 unmasked:chromosome primary_assembly:daLinVulg1.1:4:1:120922496:1 2 - TR - 221 317 339462 339556 339442 339556 133811386 + 6.6e-07 36.5 3.8 unmasked:chromosome primary_assembly:daLinVulg1.1:2:1:133811386:1 2 - TR - 221 317 339726 339820 339706 339820 133811386 + 6.6e-07 36.5 3.8 unmasked:chromosome primary_assembly:daLinVulg1.1:2:1:133811386:1 1 - TR - 150 289 70216788 70216942 70216766 70216953 153338251 + 0.00041 27.3 3.7 unmasked:chromosome primary_assembly:daLinVulg1.1:1:1:153338251:1 6 - TR - 54 161 62607550 62607678 62607532 62607681 110092459 + 0.23 18.3 0.2 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 4 - TR - 1 125 84982281 84982161 84982281 84982141 120922496 - 0.29 18.0 8.9 unmasked:chromosome primary_assembly:daLinVulg1.1:4:1:120922496:1 2 - TR - 2 120 91849787 91849646 91849807 91849626 133811386 - 0.97 16.3 0.3 unmasked:chromosome primary_assembly:daLinVulg1.1:2:1:133811386:1 2 - TR - 34 124 16129167 16129255 16129148 16129276 133811386 + 1.6 15.6 1.5 unmasked:chromosome primary_assembly:daLinVulg1.1:2:1:133811386:1 3 - TR - 29 163 113458129 113457930 113458149 113457929 127462361 - 1.7 15.5 0.9 unmasked:chromosome primary_assembly:daLinVulg1.1:3:1:127462361:1 1 - TR - 68 128 110824763 110824829 110824741 110824849 153338251 + 3.3 14.5 1.2 unmasked:chromosome primary_assembly:daLinVulg1.1:1:1:153338251:1 2 - TR - 38 124 113221455 113221355 113221476 113221328 133811386 - 3.8 14.3 5.5 unmasked:chromosome primary_assembly:daLinVulg1.1:2:1:133811386:1 3 - TR - 152 196 30941678 30941728 30941655 30941750 127462361 + 4.1 14.2 3.2 unmasked:chromosome primary_assembly:daLinVulg1.1:3:1:127462361:1 4 - TR - 23 119 32633863 32633991 32633852 32634011 120922496 + 5.6 13.8 4.5 unmasked:chromosome primary_assembly:daLinVulg1.1:4:1:120922496:1 2 - TR - 1 84 17245707 17245790 17245707 17245810 133811386 + 6.6 13.5 3.3 unmasked:chromosome primary_assembly:daLinVulg1.1:2:1:133811386:1 2 - TR - 24 130 100425460 100425649 100425449 100425669 133811386 + 7.4 13.4 2.5 unmasked:chromosome primary_assembly:daLinVulg1.1:2:1:133811386:1 6 - TR - 2 80 57368759 57368662 57368760 57368638 110092459 - 7.5 13.4 6.5 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 49 125 62573209 62573284 62573181 62573305 110092459 + 8.3 13.2 0.8 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 2 84 57400776 57400675 57400777 57400637 110092459 - 8.5 13.2 6.1 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 2 84 57402994 57402893 57402995 57402855 110092459 - 8.5 13.2 6.1 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 2 84 57405212 57405111 57405213 57405073 110092459 - 8.5 13.2 6.1 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 2 84 57407429 57407328 57407430 57407290 110092459 - 8.5 13.2 6.1 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 2 84 57409646 57409545 57409647 57409507 110092459 - 8.5 13.2 6.1 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 4 - TR - 33 133 18464960 18464832 18464966 18464809 120922496 - 8.7 13.1 3.8 unmasked:chromosome primary_assembly:daLinVulg1.1:4:1:120922496:1 6 - TR - 2 83 57391912 57391812 57391913 57391774 110092459 - 9.2 13.1 6.3 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 2 83 57396344 57396244 57396345 57396206 110092459 - 9.2 13.1 6.3 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 2 83 57398560 57398460 57398561 57398422 110092459 - 9.2 13.1 6.3 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 6 - TR - 67 122 46018286 46018364 46018263 46018384 110092459 + 9.2 13.1 3.6 unmasked:chromosome primary_assembly:daLinVulg1.1:6:1:110092459:1 3 - TR - 105 172 94773395 94773499 94773376 94773501 127462361 + 9.9 13.0 0.0 unmasked:chromosome primary_assembly:daLinVulg1.1:3:1:127462361:1 # # Program: nhmmer # Version: 3.4 (Aug 2023) # Pipeline mode: SEARCH # Query file: ../telomeric-identifier/data/TR.hmm # Target file: ../telomeric-identifier/data/Linaria_vulgaris-GCA_948329865.1-unmasked.fa.gz # Option settings: ../hmmer-3.4/src/nhmmer --tblout test.tbl ../telomeric-identifier/data/TR.hmm ../telomeric-identifier/data/Linaria_vulgaris-GCA_948329865.1-unmasked.fa.gz # Current dir: /Users/mc9148/Documents/software/hmm_tblout # Date: Wed May 1 14:59:32 2024 # [ok]