# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "hpo"
version = "0.11.0"
authors = ["Jonas Marcello <jonas.marcello@esbme.com>"]
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Human Phenotype Ontology Similarity"
homepage = "https://github.com/anergictcell/hpo"
readme = "README.md"
keywords = [
    "hpo",
    "phenomics",
    "ontology",
    "omim",
    "similarity",
]
categories = [
    "science",
    "data-structures",
    "parser-implementations",
]
license = "MIT"
repository = "https://github.com/anergictcell/hpo"

[profile.release]
lto = true

[lib]
name = "hpo"
path = "src/lib.rs"

[[example]]
name = "bench_common_ancestors"
path = "examples/bench_common_ancestors.rs"

[[example]]
name = "bench_compare_gene_to_diseases"
path = "examples/bench_compare_gene_to_diseases.rs"

[[example]]
name = "bench_disease_enrichment"
path = "examples/bench_disease_enrichment.rs"

[[example]]
name = "bench_read_ontology"
path = "examples/bench_read_ontology.rs"

[[example]]
name = "bench_term_similarity"
path = "examples/bench_term_similarity.rs"

[[example]]
name = "common_ancestors"
path = "examples/common_ancestors.rs"

[[example]]
name = "compare_ontologies"
path = "examples/compare_ontologies.rs"

[[example]]
name = "compare_similarities"
path = "examples/compare_similarities.rs"

[[example]]
name = "dendogram"
path = "examples/dendogram.rs"

[[example]]
name = "disease_similarity"
path = "examples/disease_similarity.rs"

[[example]]
name = "distance_to_term"
path = "examples/distance_to_term.rs"

[[example]]
name = "enrichment"
path = "examples/enrichment.rs"

[[example]]
name = "gene_similarity"
path = "examples/gene_similarity.rs"

[[example]]
name = "obo_to_bin"
path = "examples/obo_to_bin.rs"

[[example]]
name = "search_by_name"
path = "examples/search_by_name.rs"

[[example]]
name = "subontology"
path = "examples/subontology.rs"

[[example]]
name = "term_to_disease"
path = "examples/term_to_disease.rs"

[[example]]
name = "term_to_gene"
path = "examples/term_to_gene.rs"

[[example]]
name = "term_to_ic"
path = "examples/term_to_ic.rs"

[[example]]
name = "term_to_parents"
path = "examples/term_to_parents.rs"

[[bench]]
name = "ancestors"
path = "benches/ancestors.rs"
harness = false

[[bench]]
name = "ontology"
path = "benches/ontology.rs"
harness = false

[[bench]]
name = "similarity"
path = "benches/similarity.rs"
harness = false

[dependencies.smallvec]
version = "1"

[dependencies.thiserror]
version = "1.0"

[dependencies.tracing]
version = "0.1"

[dev-dependencies.criterion]
version = "0.4"

[dev-dependencies.rayon]
version = "1.6.0"

[dev-dependencies.simple_logger]
version = "4.0.0"