Release 1.2.1: 15th February 2022 --------------------------------- The only change in this release is a minor adjustment to the histogram code so it works on systems with small stacks. This was detected on Windows Mingw builds. Release 1.2: 10th February 2022 ------------------------------- This release contains the following minor changes. Please see the "git log" for the full details. Improvements / changes: - Speed up of rANS4x16 order-0. We now use a branchless encoder renormalisation step. For complex data it's between 13 and 50% speed up depending on compiler. - Improve rANS4x16 compute_shift estimates. The entropy calculation is now more accurate. This leads to more frequent use of the 10-bit frequency mode, at an expense of up to 1% size growth. - Speed improvements to the striped rANS mode, both encoding and decoding. Encoder gains ~8% and decoder ~5%, but varies considerably by compiler and data. - Added new var_put_u64_safe and var_put_u32_safe interfaces. These are automatically used by var_put_u64 and var_put_u32 when near the end of the buffer, but may also be called directly. - Small speed ups to the hist8 and hist1_4 functions. - Minor speed up to RLE decoding. Bug fixes: - Work around an icc-2021 compiler bug, but also speed up the varint encoding too (#29). - Fix an off-by-one error in the initial size check in arith_dynamic. This meant the very smallest of blocks could fail to decode. Reported by Divon Lan. - Fixed hist1_4 to also count the last byte when computing T0[]. - Fixed overly harsh bounds checking in the fqzcomp read_array function, which meant it failed to decode some configurations. Release 1.1.1: 6th July 2021 ---------------------------- This release contains the following minor changes. Please see the "git log" for the full details. Improvements / changes: - Modernised autoconf usage to avoid warnings with newer versions. (John Marshall) - Avoid using awk with large records, due to some systems (e.g. Solaris / OpenIndiana) with line length limits . (John Marshall) - Applied Debian patch to make the library link against -lm. Bug fixes: - Fixed an issue with the name tokeniser when a slice (name_context) has exactly 1 more name than the previous call. (James Bonfield) - Removed access to an uninitialised variable in the name tokeniser decode when given malformed data. This occurs when we use delta encoding for the very first name. (James Bonfield, OSS-Fuzz) - Minor fixes to distcheck and distclean targets Release 1.0: 23rd Feb 2021 -------------------------- This marks the first non-beta release of htscodecs, following a perioid of integration with Htslib and automated fuzzing by Google's OSS-Fuzz program. [Note this testing only applies to the C implementation. The JavaScript code should still be considered as examples of the codecs, more for purposes of understanding and clarity than as a fully optimised and tested release.] Since the last release (0.5) the key changes are: - Improved support for big endian platforms - Speed improvements to CRAM 3.0 4x8 rANS order-1 encoding. It's between 10 and 50% faster at encoding, based on input data. - Improved autoconf bzip2 checks and tidy up "make test" output. - Added some more files into "make install", so that "make distcheck" now passes. - Replaced Travis with Cirrus-CI testing. - Removed various C undefined behaviour, such as left shifting of negative values and integer overflows. As far as we know these were currently harmless on the supported platforms, but may break future compiler optimisations. - Fixed numerous OSS-Fuzz identified flaws. Some of these were potential security issues such as small buffer overruns. - Tidied up some code to prevent warnings. - The name tokeniser now has a limit on the size of data it can encode (10 million records). This may still be too high given the memory it will require, so it may be reduced again.