/* * Copyright (c) 2020 Genome Research Ltd. * Author(s): James Bonfield * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1. Redistributions of source code must retain the above copyright notice, * this list of conditions and the following disclaimer. * * 2. Redistributions in binary form must reproduce the above * copyright notice, this list of conditions and the following * disclaimer in the documentation and/or other materials provided * with the distribution. * * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger * Institute nor the names of its contributors may be used to endorse * or promote products derived from this software without specific * prior written permission. * * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS * IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ #ifndef HTSCODECS_ENDIAN_H #define HTSCODECS_ENDIAN_H // Endianness checking. // Sets HTSCODECS_ENDIAN_KNOWN if system type detected and either // HTSCODECS_LITTLE_ENDIAN or HTSCODECS_BIG_ENDIAN. /* * In general our preferred route is to write code in an endian agnostic * fashion, but our data formats are natively little endian. Therefore * in time critical code it's sometimes best to exploit that. * * Therefore we'll optimise code along the lines of: * * #ifdef HTSCODECS_LITTLE_ENDIAN * // do something little endian specific * #else * // do something in an endian agnostic fashion * #endif * * This means our code works even if we fail to recognise the * specific machine type. */ #if (defined(__i386__) \ || defined(__i386) \ || defined(__amd64__) \ || defined(__amd64) \ || defined(__x86_64__) \ || defined(__x86_64) \ || defined(__i686__) \ || defined(__i686)) \ || (defined(__BYTE_ORDER__) && __BYTE_ORDER__ == __ORDER_LITTLE_ENDIAN__) \ || defined(__LITTLE_ENDIAN__) \ || defined(__ARMEL__) \ || defined(__THUMBEL__) \ || defined(__AARCH64EL__) \ || defined(_MIPSEL) \ || defined(__MIPSEL) \ || defined(__MIPSEL__) // Little endian # define HTSCODECS_LITTLE_ENDIAN # define HTSCODECS_ENDIAN_KNOWN #elif (defined(__BYTE_ORDER__) && __BYTE_ORDER__ == __ORDER_BIG_ENDIAN__) \ || defined(__BIG_ENDIAN__) \ || defined(__ARMEB__) \ || defined(__THUMBEB__) \ || defined(__AAARCHEB__) \ || defined(_MIPSEB) \ || defined(__MIPSEB) \ || defined(__MIPSEB__) // Big endian # define HTSCODECS_BIG_ENDIAN # define HTSCODECS_ENDIAN_KNOWN #else // Unknown - code will need to check HTSCODES_ENDIAN_KNOWN and do endian agnostic #endif #endif /* HTSCODECS_ENDIAN_H */