# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "hyper-gen"
version = "0.2.2"
authors = ["wexu@ucsd.edu"]
description = "HyperGen is a high-performance Rust library to sketch genomics files into hypervectors and realize fast Average Nucleotide Identity (ANI) approximation."
readme = "README.md"
license = "MIT OR Apache-2.0"
repository = "https://github.com/wh-xu/Hyper-Gen"

[profile.dev]
opt-level = 3
overflow-checks = false

[profile.release]
opt-level = 3
lto = true
panic = "abort"

[[bin]]
name = "hyper-gen"
path = "src/main.rs"

[dependencies.ahash]
version = "0.8.11"

[dependencies.bincode]
version = "1.3.3"

[dependencies.bitpacking]
version = "0.9.2"

[dependencies.bloom]
version = "0.3.2"

[dependencies.chrono]
version = "0.4.38"

[dependencies.clap]
version = "4.4.6"
features = ["cargo"]

[dependencies.cudarc]
version = "0.10.0"
optional = true

[dependencies.env_logger]
version = "0.11.3"

[dependencies.glob]
version = "0.3.1"

[dependencies.indexmap]
version = "2.0.2"

[dependencies.indicatif]
version = "0.17.7"

[dependencies.log]
version = "0.4.20"

[dependencies.ndarray]
version = "0.15.6"

[dependencies.needletail]
version = "0.5.1"

[dependencies.rand]
version = "0.8.5"

[dependencies.rand_xoshiro]
version = "0.6.0"

[dependencies.rayon]
version = "1.8.0"

[dependencies.rust-seq2kminmers]
version = "0.1.0"

[dependencies.serde]
version = "1.0.193"
features = ["derive"]

[dependencies.t1ha]
version = "0.1.0"

[dependencies.wyhash]
version = "0.5.0"

[dependencies.xxhash-rust]
version = "0.8.10"
features = [
    "xxh3",
    "const_xxh3",
]

[build-dependencies.bindgen]
version = "0.66.1"

[build-dependencies.cc]
version = "1.0.82"

[build-dependencies.regex]
version = "1.9.3"

[features]
cuda-sketch-ada-lovelace = ["dep:cudarc"]
cuda-sketch-ampere = ["dep:cudarc"]
cuda-sketch-hopper = ["dep:cudarc"]
cuda-sketch-volta = ["dep:cudarc"]