# imzml

## What does this crate do?

* Read data in the mass spectrometry format [mzML](https://www.psidev.info/mzML) or the mass spectrometry imaging format [imzML](https://ms-imaging.org/imzml/).
* Validate the data file against the specification

## Read mzML

```rust
let parser = MzMLReader::from_path("/path/to/data.mzML").unwrap();

for error in parser.errors() {
    println!("{:?}", error);
}

let mzml: MzML<_> = parser.into();
```

## Validate mzML
```rust
use imzml::validation::full_validate;

let mut validation_errors = full_validate(parser.ontology(), mzml);
```

## Read imzML

```rust
let parser = ImzMLReader::from_path("/path/to/data.imzML").unwrap();

for error in parser.errors() {
    println!("{:?}", error);
}

let imzml: ImzML<_> = parser.into();

let mz_772 = imzml.ion_image(772.573, 100.0);
```

## Validate imzML
```rust
use imzml::validation::full_validate;

let mut validation_errors = full_validate(parser.ontology(), imzml);
```