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[package]
edition = "2021"
name = "isONclust3"
version = "0.0.2"
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Rust implementation of a novel de novo clustering algorithm. isONclust3 is a tool for clustering either PacBio Iso-Seq reads, or Oxford Nanopore reads into clusters, where each cluster represents all reads that came from a gene family. Output is a tsv file with each read assigned to a cluster-ID and a folder 'fastq' containing one fastq file per cluster generated. Detailed information is available in the isONclust3 paper."
readme = "README.md"
license = "MIT"
repository = "https://github.com/aljpetri/isONclust3"

[[bin]]
name = "isONclust3"
path = "src/main.rs"

[dependencies.bio]
version = "1"

[dependencies.bio-seq]
version = "0.10.0"

[dependencies.clap]
version = "4.4.3"
features = [
    "derive",
    "cargo",
]

[dependencies.clap-cargo]
version = "0.12.0"

[dependencies.memory-stats]
version = "1.0.0"

[dependencies.minimizer-iter]
version = "1.2.1"

[dependencies.nohash-hasher]
version = "0.2.0"

[dependencies.rayon]
version = "1.7"

[dependencies.rustc-hash]
version = "1.1.0"