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[package]
edition = "2021"
name = "kmerutils"
version = "0.0.11"
authors = ["jeanpierre.both@gmail.com"]
description = "Kmer counting, hashing, sequence sketching"
documentation = "https://docs.rs/kmerutils"
readme = "README.md"
keywords = [
    "genomics",
    "hash",
    "kmer",
    "sketching",
]
license = "MIT OR Apache-2.0"
repository = "https://github.com/jean-pierreBoth/kmerutils"

[lib]
path = "src/lib.rs"
test = true
doc = true

[[bin]]
name = "parsefastq"
path = "src/bin/parsefastq.rs"

[[bin]]
name = "qualityloader"
path = "src/bin/qualityload.rs"
required-features = ["withzmq"]

[[bin]]
name = "datasketcher"
path = "src/bin/datasketcher.rs"

[[example]]
name = "kmerreload"
path = "examples/reloadkmermulti.rs"

[dependencies.bloom]
version = "0.3"

[dependencies.clap]
version = "4.5"

[dependencies.crossbeam]
version = "0.8"

[dependencies.cuckoofilter]
version = "0.5"

[dependencies.env_logger]
version = "0.9"

[dependencies.fnv]
version = "1.0"

[dependencies.fxhash]
version = "0.2"

[dependencies.hdrhistogram]
version = "7.5"

[dependencies.hnsw_rs]
version = "0.3.0"

[dependencies.indexmap]
version = "2.2"

[dependencies.lazy_static]
version = "1.4"

[dependencies.log]
version = "0.4"

[dependencies.memory-stats]
version = "1.1"
features = ["always_use_statm"]

[dependencies.metrohash]
version = "1.0.5"

[dependencies.multimap]
version = "0.10"

[dependencies.ndarray]
version = "0.15"

[dependencies.needletail]
version = "0.5"

[dependencies.num]
version = "0.4"

[dependencies.num_cpus]
version = "1.13"

[dependencies.parking_lot]
version = "0.12"

[dependencies.probminhash]
version = "0.1.11"

[dependencies.rand]
version = "0.8"

[dependencies.rand_distr]
version = "0.4"

[dependencies.rand_xorshift]
version = "0.3"

[dependencies.rand_xoshiro]
version = "0.6"

[dependencies.rayon]
version = "1.10"

[dependencies.redis]
version = "0.21.0"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.wavelet-matrix]
version = "0.4.7"

[dependencies.wyhash]
version = "0.5"

[dependencies.xdr-codec]
version = "0.2.5"

[dependencies.zmq]
version = "0.9"
optional = true

[features]
default = ["sminhash2"]
simdeez_f = ["hnsw_rs/simdeez_f"]
sminhash2 = ["probminhash/sminhash2"]
withzmq = ["zmq"]