# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
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# to registry (e.g., crates.io) dependencies.
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# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "kraken2_rs"
version = "0.6.12"
authors = ["jianshuzhao@yahoo.com"]
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "An ultra-fast, low-memory footprint and accurate taxonomy classifier for all"
readme = "README.md"
keywords = [
    "bioinformatics",
    "metagenomics",
    "microbiome",
    "classification",
]
license = "MIT"
repository = "https://github.com/jianshu93/kraken2-rust"

[lib]
name = "kraken2_rs"
path = "src/lib.rs"

[[bin]]
name = "annotate"
path = "src/bin/annotate.rs"

[[bin]]
name = "build_k2_db"
path = "src/bin/build_k2_db.rs"

[[bin]]
name = "chunk_db"
path = "src/bin/chunk_db.rs"

[[bin]]
name = "direct"
path = "src/bin/direct.rs"

[[bin]]
name = "estimate_capacity"
path = "src/bin/estimate_capacity.rs"

[[bin]]
name = "hashshard"
path = "src/bin/hashshard.rs"

[[bin]]
name = "kraken2_rs"
path = "src/bin/kraken2.rs"

[[bin]]
name = "merge_fna"
path = "src/bin/merge_fna.rs"

[[bin]]
name = "resolve"
path = "src/bin/resolve.rs"

[[bin]]
name = "splitr"
path = "src/bin/splitr.rs"

[[example]]
name = "build_and_classify"
path = "examples/build_and_classify.rs"

[dependencies.byteorder]
version = "1.4"

[dependencies.clap]
version = "4.4.10"
features = ["derive"]

[dependencies.dashmap]
version = "6.0.1"
features = ["rayon"]

[dependencies.flate2]
version = "1.0"

[dependencies.hyperloglogplus]
version = "0.4.1"
features = ["const-loop"]

[dependencies.libc]
version = "0.2"

[dependencies.num_cpus]
version = "1.13.1"

[dependencies.rayon]
version = "1.8"

[dependencies.regex]
version = "1.5.4"

[dependencies.seahash]
version = "4.1.0"

[dependencies.seqkmer]
version = "0.1.0"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.walkdir]
version = "2"

[dev-dependencies.criterion]
version = "0.5.1"

[dev-dependencies.farmhash]
version = "1.1.5"

[dev-dependencies.twox-hash]
version = "1.6.3"

[features]
double_hashing = []
exact_counting = []