/*************************************************************************** base_three.cpp ------------------- W. Michael Brown (ORNL) Base class for pair styles with per-particle data for position and type __________________________________________________________________________ This file is part of the LAMMPS Accelerator Library (LAMMPS_AL) __________________________________________________________________________ begin : Tue April 2, 2013 email : brownw@ornl.gov ***************************************************************************/ #include "lal_base_three.h" namespace LAMMPS_AL { #define BaseThreeT BaseThree extern Device global_device; template BaseThreeT::BaseThree() : _compiled(false), _max_bytes(0) { device=&global_device; ans=new Answer(); nbor=new Neighbor(); #ifdef THREE_CONCURRENT ans2=new Answer(); #endif } template BaseThreeT::~BaseThree() { delete ans; delete nbor; #ifdef THREE_CONCURRENT delete ans2; #endif } template int BaseThreeT::bytes_per_atom_atomic(const int max_nbors) const { int b=device->atom.bytes_per_atom()+ans->bytes_per_atom()+ nbor->bytes_per_atom(max_nbors); #ifdef THREE_CONCURRENT b+=ans2->bytes_per_atom(); #endif return b; } template int BaseThreeT::init_three(const int nlocal, const int nall, const int max_nbors, const int maxspecial, const double cell_size, const double gpu_split, FILE *_screen, const void *pair_program, const char *two, const char *three_center, const char *three_end, const char *short_nbor) { screen=_screen; int gpu_nbor=0; if (device->gpu_mode()==Device::GPU_NEIGH) gpu_nbor=1; else if (device->gpu_mode()==Device::GPU_HYB_NEIGH) gpu_nbor=2; _gpu_nbor=gpu_nbor; int _gpu_host=0; int host_nlocal=hd_balancer.first_host_count(nlocal,gpu_split,gpu_nbor); if (host_nlocal>0) _gpu_host=1; _threads_per_atom=device->threads_per_atom(); if (_threads_per_atom>1 && gpu_nbor==0) { // neigh no and tpa > 1 nbor->packing(true); _nbor_data=&(nbor->dev_packed); } else // neigh yes or tpa == 1 _nbor_data=&(nbor->dev_nbor); if (_threads_per_atom*_threads_per_atom>device->warp_size()) return -10; int success=device->init(*ans,false,false,nlocal,nall,maxspecial); if (success!=0) return success; success = device->init_nbor(nbor,nlocal,host_nlocal,nall,maxspecial,_gpu_host, max_nbors,cell_size,false,_threads_per_atom); if (success!=0) return success; ucl_device=device->gpu; atom=&device->atom; #ifdef THREE_CONCURRENT _end_command_queue=ucl_device->num_queues(); ucl_device->push_command_queue(); if (!ans2->init(ans->max_inum(),false,false,*(device->gpu))) return -3; ans2->cq(_end_command_queue); #endif _block_pair=device->pair_block_size(); _block_size=device->block_ellipse(); compile_kernels(*ucl_device,pair_program,two,three_center,three_end,short_nbor); // Initialize host-device load balancer hd_balancer.init(device,gpu_nbor,gpu_split); // Initialize timers for the selected GPU time_pair.init(*ucl_device); time_pair.zero(); pos_tex.bind_float(atom->x,4); _max_an_bytes=ans->gpu_bytes()+nbor->gpu_bytes(); #ifdef THREE_CONCURRENT _max_an_bytes+=ans2->gpu_bytes(); #endif int ef_nall=nall; if (ef_nall==0) ef_nall=2000; dev_short_nbor.alloc(ef_nall*(2+max_nbors),*(this->ucl_device),UCL_READ_WRITE); return 0; } template void BaseThreeT::estimate_gpu_overhead() { device->estimate_gpu_overhead(1,_gpu_overhead,_driver_overhead); } template void BaseThreeT::clear_atomic() { // Output any timing information acc_timers(); double avg_split=hd_balancer.all_avg_split(); _gpu_overhead*=hd_balancer.timestep(); _driver_overhead*=hd_balancer.timestep(); device->output_times(time_pair,*ans,*nbor,avg_split,_max_bytes+_max_an_bytes, _gpu_overhead,_driver_overhead,_threads_per_atom,screen); if (_compiled) { k_three_center.clear(); k_three_end.clear(); k_three_end_vatom.clear(); k_pair.clear(); k_short_nbor.clear(); delete pair_program; _compiled=false; } time_pair.clear(); hd_balancer.clear(); dev_short_nbor.clear(); nbor->clear(); ans->clear(); #ifdef THREE_CONCURRENT ans2->clear(); assert(ucl_device->num_queues()==_end_command_queue+1); // ucl_device will clean up the command queue in its destructor // ucl_device->pop_command_queue(); #endif device->clear(); } // --------------------------------------------------------------------------- // Copy neighbor list from host // --------------------------------------------------------------------------- template int * BaseThreeT::reset_nbors(const int nall, const int inum, const int nlist, int *ilist, int *numj, int **firstneigh, bool &success) { success=true; int mn=nbor->max_nbor_loop(nlist,numj,ilist); resize_atom(inum,nall,success); resize_local(nall,mn,success); if (!success) return NULL; _nall = nall; // originally the requirement that nall == nlist was enforced // to allow direct indexing neighbors of neighbors after re-arrangement // nbor->get_host3(nall,nlist,ilist,numj,firstneigh,block_size()); // now the requirement is removed, allowing to work within pair hybrid nbor->get_host(nlist,ilist,numj,firstneigh,block_size()); double bytes=ans->gpu_bytes()+nbor->gpu_bytes(); #ifdef THREE_CONCURRENT bytes+=ans2->gpu_bytes(); #endif if (bytes>_max_an_bytes) _max_an_bytes=bytes; return ilist; } // --------------------------------------------------------------------------- // Build neighbor list on device // --------------------------------------------------------------------------- template inline int BaseThreeT::build_nbor_list(const int inum, const int host_inum, const int nall, double **host_x, int *host_type, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, bool &success) { success=true; resize_atom(inum,nall,success); resize_local(nall,host_inum,nbor->max_nbors(),success); if (!success) return 0; atom->cast_copy_x(host_x,host_type); _nall = nall; int mn; nbor->build_nbor_list(host_x, nall, host_inum, nall, *atom, sublo, subhi, tag, nspecial, special, success, mn); double bytes=ans->gpu_bytes()+nbor->gpu_bytes(); #ifdef THREE_CONCURRENT bytes+=ans2->gpu_bytes(); #endif if (bytes>_max_an_bytes) _max_an_bytes=bytes; return mn; } // --------------------------------------------------------------------------- // Copy nbor list from host if necessary and then calculate forces, virials,.. // --------------------------------------------------------------------------- template void BaseThreeT::compute(const int f_ago, const int inum_full, const int nall, const int nlist, double **host_x, int *host_type, int *ilist, int *numj, int **firstneigh, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, const double cpu_time, bool &success) { acc_timers(); if (inum_full==0) { host_start=0; // Make sure textures are correct if realloc by a different hybrid style resize_atom(0,nall,success); zero_timers(); return; } int ago=hd_balancer.ago_first(f_ago); int inum=hd_balancer.balance(ago,inum_full,cpu_time); ans->inum(inum); #ifdef THREE_CONCURRENT ans2->inum(inum); #endif host_start=inum; if (ago==0) { reset_nbors(nall, inum, nlist, ilist, numj, firstneigh, success); if (!success) return; _max_nbors = nbor->max_nbor_loop(nlist,numj,ilist); } atom->cast_x_data(host_x,host_type); hd_balancer.start_timer(); atom->add_x_data(host_x,host_type); // re-allocate dev_short_nbor if necessary if (nall*(2+_max_nbors) > dev_short_nbor.cols()) { int _nmax=static_cast(static_cast(nall)*1.10); dev_short_nbor.resize((2+_max_nbors)*_nmax); } // _ainum to be used in loop() for short neighbor list build _ainum = nlist; int evatom=0; if (eatom || vatom) evatom=1; #ifdef THREE_CONCURRENT ucl_device->sync(); #endif loop(eflag,vflag,evatom); ans->copy_answers(eflag,vflag,eatom,vatom,ilist); device->add_ans_object(ans); #ifdef THREE_CONCURRENT ans2->copy_answers(eflag,vflag,eatom,vatom,ilist); device->add_ans_object(ans2); #endif hd_balancer.stop_timer(); } // --------------------------------------------------------------------------- // Reneighbor on GPU if necessary and then compute forces, virials, energies // --------------------------------------------------------------------------- template int ** BaseThreeT::compute(const int ago, const int inum_full, const int nall, double **host_x, int *host_type, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, int **ilist, int **jnum, const double cpu_time, bool &success) { acc_timers(); if (inum_full==0) { host_start=0; // Make sure textures are correct if realloc by a different hybrid style resize_atom(0,nall,success); zero_timers(); return NULL; } hd_balancer.balance(cpu_time); int inum=hd_balancer.get_gpu_count(ago,inum_full); ans->inum(inum); #ifdef THREE_CONCURRENT ans2->inum(inum); #endif host_start=inum; // Build neighbor list on GPU if necessary if (ago==0) { _max_nbors = build_nbor_list(inum, inum_full-inum, nall, host_x, host_type, sublo, subhi, tag, nspecial, special, success); if (!success) return NULL; hd_balancer.start_timer(); } else { atom->cast_x_data(host_x,host_type); hd_balancer.start_timer(); atom->add_x_data(host_x,host_type); } *ilist=nbor->host_ilist.begin(); *jnum=nbor->host_acc.begin(); // re-allocate dev_short_nbor if necessary if (nall*(2+_max_nbors) > dev_short_nbor.cols()) { int _nmax=static_cast(static_cast(nall)*1.10); dev_short_nbor.resize((2+_max_nbors)*_nmax); } // _ainum to be used in loop() for short neighbor list build _ainum = nall; int evatom=0; if (eatom || vatom) evatom=1; #ifdef THREE_CONCURRENT ucl_device->sync(); #endif loop(eflag,vflag,evatom); ans->copy_answers(eflag,vflag,eatom,vatom); device->add_ans_object(ans); #ifdef THREE_CONCURRENT ans2->copy_answers(eflag,vflag,eatom,vatom); device->add_ans_object(ans2); #endif hd_balancer.stop_timer(); return nbor->host_jlist.begin()-host_start; } template double BaseThreeT::host_memory_usage_atomic() const { return device->atom.host_memory_usage()+nbor->host_memory_usage()+ 4*sizeof(numtyp)+sizeof(BaseThree); } template void BaseThreeT::compile_kernels(UCL_Device &dev, const void *pair_str, const char *two, const char *three_center, const char *three_end, const char* short_nbor) { if (_compiled) return; std::string vatom_name=std::string(three_end)+"_vatom"; pair_program=new UCL_Program(dev); pair_program->load_string(pair_str,device->compile_string().c_str()); k_three_center.set_function(*pair_program,three_center); k_three_end.set_function(*pair_program,three_end); k_three_end_vatom.set_function(*pair_program,vatom_name.c_str()); k_pair.set_function(*pair_program,two); k_short_nbor.set_function(*pair_program,short_nbor); pos_tex.get_texture(*pair_program,"pos_tex"); #ifdef THREE_CONCURRENT k_three_end.cq(ucl_device->cq(_end_command_queue)); k_three_end_vatom.cq(ucl_device->cq(_end_command_queue)); #endif _compiled=true; } template class BaseThree; }