/*************************************************************************** charmm_long.cpp ------------------- W. Michael Brown (ORNL) Class for acceleration of the charmm/coul/long pair style. __________________________________________________________________________ This file is part of the LAMMPS Accelerator Library (LAMMPS_AL) __________________________________________________________________________ begin : email : brownw@ornl.gov ***************************************************************************/ #if defined(USE_OPENCL) #include "charmm_long_cl.h" #elif defined(USE_CUDART) const char *charmm_long=0; #else #include "charmm_long_cubin.h" #endif #include "lal_charmm_long.h" #include namespace LAMMPS_AL { #define CHARMMLongT CHARMMLong extern Device device; template CHARMMLongT::CHARMMLong() : BaseCharge(), _allocated(false) { } template CHARMMLongT::~CHARMMLong() { clear(); } template int CHARMMLongT::bytes_per_atom(const int max_nbors) const { return this->bytes_per_atom_atomic(max_nbors); } template int CHARMMLongT::init(const int ntypes, double host_cut_bothsq, double **host_lj1, double **host_lj2, double **host_lj3, double **host_lj4, double **host_offset, double *host_special_lj, const int nlocal, const int nall, const int max_nbors, const int maxspecial, const double cell_size, const double gpu_split, FILE *_screen, double host_cut_ljsq, const double host_cut_coulsq, double *host_special_coul, const double qqrd2e, const double g_ewald, const double cut_lj_innersq, const double denom_lj, double **epsilon, double **sigma, const bool mix_arithmetic) { int success; success=this->init_atomic(nlocal,nall,max_nbors,maxspecial,cell_size,gpu_split, _screen,charmm_long,"k_charmm_long"); if (success!=0) return success; // If atom type constants fit in shared memory use fast kernel int lj_types=ntypes; shared_types=false; int max_bio_shared_types=this->device->max_bio_shared_types(); if (this->_block_bio_size>=64 && mix_arithmetic && lj_types<=max_bio_shared_types) shared_types=true; _lj_types=lj_types; // Allocate a host write buffer for data initialization int h_size=lj_types*lj_types; if (h_size host_write(h_size*32,*(this->ucl_device), UCL_WRITE_ONLY); for (int i=0; iucl_device),UCL_READ_ONLY); this->atom->type_pack4(ntypes,lj_types,lj1,host_write,host_lj1,host_lj2, host_lj3,host_lj4); if (shared_types) { ljd.alloc(max_bio_shared_types,*(this->ucl_device),UCL_READ_ONLY); this->atom->self_pack2(ntypes,ljd,host_write,epsilon,sigma); } sp_lj.alloc(8,*(this->ucl_device),UCL_READ_ONLY); for (int i=0; i<4; i++) { host_write[i]=host_special_lj[i]; host_write[i+4]=host_special_coul[i]; } ucl_copy(sp_lj,host_write,8,false); _cut_bothsq = host_cut_bothsq; _cut_coulsq = host_cut_coulsq; _cut_ljsq = host_cut_ljsq; _cut_lj_innersq = cut_lj_innersq; _qqrd2e=qqrd2e; _g_ewald=g_ewald; _denom_lj=denom_lj; _allocated=true; this->_max_bytes=lj1.row_bytes()+ljd.row_bytes()+sp_lj.row_bytes(); return 0; } template void CHARMMLongT::clear() { if (!_allocated) return; _allocated=false; lj1.clear(); ljd.clear(); sp_lj.clear(); this->clear_atomic(); } template double CHARMMLongT::host_memory_usage() const { return this->host_memory_usage_atomic()+sizeof(CHARMMLong); } // --------------------------------------------------------------------------- // Calculate energies, forces, and torques // --------------------------------------------------------------------------- template void CHARMMLongT::loop(const bool _eflag, const bool _vflag) { // Compute the block size and grid size to keep all cores busy const int BX=this->_block_bio_size; int eflag, vflag; if (_eflag) eflag=1; else eflag=0; if (_vflag) vflag=1; else vflag=0; int GX=static_cast(ceil(static_cast(this->ans->inum())/ (BX/this->_threads_per_atom))); int ainum=this->ans->inum(); int nbor_pitch=this->nbor->nbor_pitch(); this->time_pair.start(); if (shared_types) { this->k_pair_fast.set_size(GX,BX); this->k_pair_fast.run(&this->atom->x, &ljd, &sp_lj, &this->nbor->dev_nbor, &this->_nbor_data->begin(), &this->ans->force, &this->ans->engv, &eflag, &vflag, &ainum, &nbor_pitch, &this->atom->q, &_cut_coulsq, &_qqrd2e, &_g_ewald, &_denom_lj, &_cut_bothsq, &_cut_ljsq, &_cut_lj_innersq, &this->_threads_per_atom); } else { this->k_pair.set_size(GX,BX); this->k_pair.run(&this->atom->x, &lj1, &_lj_types, &sp_lj, &this->nbor->dev_nbor, &this->_nbor_data->begin(), &this->ans->force, &this->ans->engv, &eflag, &vflag, &ainum, &nbor_pitch, &this->atom->q, &_cut_coulsq, &_qqrd2e, &_g_ewald, &_denom_lj, &_cut_bothsq, &_cut_ljsq, &_cut_lj_innersq, &this->_threads_per_atom); } this->time_pair.stop(); } template class CHARMMLong; }