/*************************************************************************** gayberne.cpp ------------------- W. Michael Brown (ORNL) Host code for Gay-Berne potential acceleration __________________________________________________________________________ This file is part of the LAMMPS Accelerator Library (LAMMPS_AL) __________________________________________________________________________ begin : email : brownw@ornl.gov ***************************************************************************/ #if defined(USE_OPENCL) #include "gayberne_cl.h" #include "gayberne_lj_cl.h" #elif defined(USE_CUDART) const char *gayberne=0; const char *gayberne_lj=0; #else #include "gayberne_cubin.h" #include "gayberne_lj_cubin.h" #endif #include "lal_gayberne.h" #include namespace LAMMPS_AL { #define GayBerneT GayBerne extern Device device; template GayBerneT::GayBerne() : BaseEllipsoid(), _allocated(false) { } template GayBerneT::~GayBerne() { clear(); } template int GayBerneT::bytes_per_atom(const int max_nbors) const { return this->bytes_per_atom(max_nbors); } template int GayBerneT::init(const int ntypes, const double gamma, const double upsilon, const double mu, double **host_shape, double **host_well, double **host_cutsq, double **host_sigma, double **host_epsilon, double *host_lshape, int **h_form, double **host_lj1, double **host_lj2, double **host_lj3, double **host_lj4, double **host_offset, const double *host_special_lj, const int nlocal, const int nall, const int max_nbors, const int maxspecial, const double cell_size, const double gpu_split, FILE *_screen) { int success; success=this->init_base(nlocal,nall,max_nbors,maxspecial,cell_size,gpu_split, _screen,ntypes,h_form,gayberne,gayberne_lj, "k_gayberne"); if (success!=0) return success; // If atom type constants fit in shared memory use fast kernel int lj_types=ntypes; _shared_types=false; int max_shared_types=this->device->max_shared_types(); if (lj_types<=max_shared_types && this->block_size()>=max_shared_types) { lj_types=max_shared_types; _shared_types=true; } _lj_types=lj_types; // Allocate a host write buffer for copying type data UCL_H_Vec host_write(lj_types*lj_types*32,*(this->ucl_device), UCL_WRITE_ONLY); for (int i=0; iucl_device),UCL_READ_ONLY); this->atom->type_pack2(ntypes,lj_types,sigma_epsilon,host_write, host_sigma,host_epsilon); this->cut_form.alloc(lj_types*lj_types,*(this->ucl_device),UCL_READ_ONLY); this->atom->type_pack2(ntypes,lj_types,this->cut_form,host_write, host_cutsq,h_form); lj1.alloc(lj_types*lj_types,*(this->ucl_device),UCL_READ_ONLY); this->atom->type_pack4(ntypes,lj_types,lj1,host_write,host_lj1,host_lj2, host_cutsq,h_form); lj3.alloc(lj_types*lj_types,*(this->ucl_device),UCL_READ_ONLY); this->atom->type_pack4(ntypes,lj_types,lj3,host_write,host_lj3,host_lj4, host_offset); dev_error.alloc(1,*(this->ucl_device),UCL_WRITE_ONLY); dev_error.zero(); // Allocate, cast and asynchronous memcpy of constant data // Copy data for bonded interactions gamma_upsilon_mu.alloc(7,*(this->ucl_device),UCL_READ_ONLY); host_write[0]=static_cast(gamma); host_write[1]=static_cast(upsilon); host_write[2]=static_cast(mu); host_write[3]=static_cast(host_special_lj[0]); host_write[4]=static_cast(host_special_lj[1]); host_write[5]=static_cast(host_special_lj[2]); host_write[6]=static_cast(host_special_lj[3]); ucl_copy(gamma_upsilon_mu,host_write,7,false); lshape.alloc(ntypes,*(this->ucl_device),UCL_READ_ONLY); UCL_H_Vec d_view; d_view.view(host_lshape,lshape.numel(),*(this->ucl_device)); ucl_copy(lshape,d_view,false); // Copy shape, well, sigma, epsilon, and cutsq onto GPU // - cast if necessary shape.alloc(ntypes,*(this->ucl_device),UCL_READ_ONLY); for (int i=0; i view4; view4.view((numtyp4*)host_write.begin(),shape.numel(),*(this->ucl_device)); ucl_copy(shape,view4,false); well.alloc(ntypes,*(this->ucl_device),UCL_READ_ONLY); for (int i=0; iucl_device)); ucl_copy(well,view4,false); _allocated=true; this->_max_bytes=sigma_epsilon.row_bytes()+this->cut_form.row_bytes()+ lj1.row_bytes()+lj3.row_bytes()+gamma_upsilon_mu.row_bytes()+ lshape.row_bytes()+shape.row_bytes()+well.row_bytes(); return 0; } template void GayBerneT::clear() { if (!_allocated) return; UCL_H_Vec err_flag(1,*(this->ucl_device)); ucl_copy(err_flag,dev_error,false); if (err_flag[0] == 2) std::cerr << "BAD MATRIX INVERSION IN FORCE COMPUTATION.\n"; err_flag.clear(); _allocated=false; dev_error.clear(); lj1.clear(); lj3.clear(); sigma_epsilon.clear(); this->cut_form.clear(); shape.clear(); well.clear(); lshape.clear(); gamma_upsilon_mu.clear(); this->clear_base(); } template double GayBerneT::host_memory_usage() const { return this->host_memory_usage_base()+sizeof(GayBerneT)+ 4*sizeof(numtyp); } // --------------------------------------------------------------------------- // Calculate energies, forces, and torques // --------------------------------------------------------------------------- template void GayBerneT::loop(const bool _eflag, const bool _vflag) { const int BX=this->block_size(); int eflag, vflag; if (_eflag) eflag=1; else eflag=0; if (_vflag) vflag=1; else vflag=0; int GX=0, NGX; int stride=this->nbor->nbor_pitch(); int ainum=this->ans->inum(); if (this->_multiple_forms) { this->time_nbor1.start(); if (this->_last_ellipse>0) { // ------------ ELLIPSE_ELLIPSE and ELLIPSE_SPHERE --------------- GX=static_cast(ceil(static_cast(this->_last_ellipse)/ (BX/this->_threads_per_atom))); NGX=static_cast(ceil(static_cast(this->_last_ellipse)/BX)); this->pack_nbors(NGX,BX, 0, this->_last_ellipse,ELLIPSE_SPHERE, ELLIPSE_ELLIPSE,_shared_types,_lj_types); this->time_nbor1.stop(); this->time_ellipsoid.start(); this->k_ellipsoid.set_size(GX,BX); this->k_ellipsoid.run(&this->atom->x, &this->atom->quat, &this->shape, &this->well, &this->gamma_upsilon_mu, &this->sigma_epsilon, &this->_lj_types, &this->lshape, &this->nbor->dev_nbor, &stride, &this->ans->force, &ainum, &this->ans->engv, &this->dev_error, &eflag, &vflag, &this->_last_ellipse, &this->_threads_per_atom); this->time_ellipsoid.stop(); if (this->_last_ellipse==this->ans->inum()) { this->time_nbor2.start(); this->time_nbor2.stop(); this->time_ellipsoid2.start(); this->time_ellipsoid2.stop(); this->time_lj.start(); this->time_lj.stop(); return; } // ------------ SPHERE_ELLIPSE --------------- this->time_nbor2.start(); GX=static_cast(ceil(static_cast(this->ans->inum()- this->_last_ellipse)/ (BX/this->_threads_per_atom))); NGX=static_cast(ceil(static_cast(this->ans->inum()- this->_last_ellipse)/BX)); this->pack_nbors(NGX,BX,this->_last_ellipse,this->ans->inum(), SPHERE_ELLIPSE,SPHERE_ELLIPSE,_shared_types,_lj_types); this->time_nbor2.stop(); this->time_ellipsoid2.start(); this->k_sphere_ellipsoid.set_size(GX,BX); this->k_sphere_ellipsoid.run(&this->atom->x, &this->atom->quat, &this->shape, &this->well, &this->gamma_upsilon_mu, &this->sigma_epsilon, &this->_lj_types, &this->lshape, &this->nbor->dev_nbor, &stride, &this->ans->force, &this->ans->engv, &this->dev_error, &eflag, &vflag, &this->_last_ellipse, &ainum, &this->_threads_per_atom); this->time_ellipsoid2.stop(); } else { GX=static_cast(ceil(static_cast(this->ans->inum()- this->_last_ellipse)/ (BX/this->_threads_per_atom))); this->ans->force.zero(); this->ans->engv.zero(); this->time_nbor1.stop(); this->time_ellipsoid.start(); this->time_ellipsoid.stop(); this->time_nbor2.start(); this->time_nbor2.stop(); this->time_ellipsoid2.start(); this->time_ellipsoid2.stop(); } // ------------ LJ --------------- this->time_lj.start(); if (this->_last_ellipseans->inum()) { if (this->_shared_types) { this->k_lj_fast.set_size(GX,BX); this->k_lj_fast.run(&this->atom->x, &this->lj1, &this->lj3, &this->gamma_upsilon_mu, &stride, &this->nbor->dev_packed, &this->ans->force, &this->ans->engv, &this->dev_error, &eflag, &vflag, &this->_last_ellipse, &ainum, &this->_threads_per_atom); } else { this->k_lj.set_size(GX,BX); this->k_lj.run(&this->atom->x, &this->lj1, &this->lj3, &this->_lj_types, &this->gamma_upsilon_mu, &stride, &this->nbor->dev_packed, &this->ans->force, &this->ans->engv, &this->dev_error, &eflag, &vflag, &this->_last_ellipse, &ainum, &this->_threads_per_atom); } } this->time_lj.stop(); } else { GX=static_cast(ceil(static_cast(this->ans->inum())/ (BX/this->_threads_per_atom))); NGX=static_cast(ceil(static_cast(this->ans->inum())/BX)); this->time_nbor1.start(); this->pack_nbors(NGX, BX, 0, this->ans->inum(),SPHERE_SPHERE, ELLIPSE_ELLIPSE,_shared_types,_lj_types); this->time_nbor1.stop(); this->time_ellipsoid.start(); this->k_ellipsoid.set_size(GX,BX); this->k_ellipsoid.run(&this->atom->x, &this->atom->quat, &this->shape, &this->well, &this->gamma_upsilon_mu, &this->sigma_epsilon, &this->_lj_types, &this->lshape, &this->nbor->dev_nbor, &stride, &this->ans->force, &ainum, &this->ans->engv, &this->dev_error, &eflag, &vflag, &ainum, &this->_threads_per_atom); this->time_ellipsoid.stop(); } } template class GayBerne; }