/*************************************************************************** tersoff_mod.cpp ------------------- Trung Dac Nguyen Class for acceleration of the tersoff pair style. __________________________________________________________________________ This file is part of the LAMMPS Accelerator Library (LAMMPS_AL) __________________________________________________________________________ begin : email : ndactrung@gmail.com ***************************************************************************/ #if defined(USE_OPENCL) #include "tersoff_mod_cl.h" #elif defined(USE_CUDART) const char *tersoff_mod=0; #else #include "tersoff_mod_cubin.h" #endif #include "lal_tersoff_mod.h" #include namespace LAMMPS_AL { #define TersoffMT TersoffMod extern Device device; template TersoffMT::TersoffMod() : BaseThree(), _allocated(false) { } template TersoffMT::~TersoffMod() { clear(); } template int TersoffMT::bytes_per_atom(const int max_nbors) const { return this->bytes_per_atom_atomic(max_nbors); } template int TersoffMT::init(const int ntypes, const int nlocal, const int nall, const int max_nbors, const double cell_size, const double gpu_split, FILE *_screen, int* host_map, const int nelements, int*** host_elem2param, const int nparams, const double* lam1, const double* lam2, const double* lam3,const double* powermint, const double* biga, const double* bigb, const double* bigr, const double* bigd, const double* c1, const double* c2, const double* c3, const double* c4, const double* c5, const double* h, const double* beta, const double* powern, const double* powern_del, const double* ca1, const double* host_cutsq) { int success; success=this->init_three(nlocal,nall,max_nbors,0,cell_size,gpu_split, _screen,tersoff_mod,"k_tersoff_mod_repulsive", "k_tersoff_mod_three_center", "k_tersoff_mod_three_end", "k_tersoff_mod_short_nbor"); if (success!=0) return success; int ef_nall=nall; if (ef_nall==0) ef_nall=2000; _zetaij.alloc(ef_nall*max_nbors,*(this->ucl_device),UCL_READ_WRITE); k_zeta.set_function(*(this->pair_program),"k_tersoff_mod_zeta"); // If atom type constants fit in shared memory use fast kernel int lj_types=ntypes; shared_types=false; int max_shared_types=this->device->max_shared_types(); if (lj_types<=max_shared_types && this->_block_size>=max_shared_types) { lj_types=max_shared_types; shared_types=true; } _lj_types=lj_types; _nparams = nparams; _nelements = nelements; UCL_H_Vec dview(nparams,*(this->ucl_device), UCL_WRITE_ONLY); for (int i=0; iucl_device),UCL_READ_ONLY); for (int i=0; i(lam1[i]); dview[i].y=static_cast(lam2[i]); dview[i].z=static_cast(lam3[i]); dview[i].w=static_cast(powermint[i]); } ucl_copy(ts1,dview,false); ts1_tex.get_texture(*(this->pair_program),"ts1_tex"); ts1_tex.bind_float(ts1,4); ts2.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY); for (int i=0; i(biga[i]); dview[i].y=static_cast(bigb[i]); dview[i].z=static_cast(bigr[i]); dview[i].w=static_cast(bigd[i]); } ucl_copy(ts2,dview,false); ts2_tex.get_texture(*(this->pair_program),"ts2_tex"); ts2_tex.bind_float(ts2,4); ts3.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY); for (int i=0; i(beta[i]); dview[i].y=static_cast(powern[i]); dview[i].z=static_cast(powern_del[i]); dview[i].w=static_cast(ca1[i]); } ucl_copy(ts3,dview,false); ts3_tex.get_texture(*(this->pair_program),"ts3_tex"); ts3_tex.bind_float(ts3,4); ts4.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY); for (int i=0; i(c1[i]); dview[i].y=static_cast(c2[i]); dview[i].z=static_cast(c3[i]); dview[i].w=static_cast(c4[i]); } ucl_copy(ts4,dview,false); ts4_tex.get_texture(*(this->pair_program),"ts4_tex"); ts4_tex.bind_float(ts4,4); ts5.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY); for (int i=0; i(c5[i]); dview[i].y=static_cast(h[i]); dview[i].z=(numtyp)0; dview[i].w=(numtyp)0; } ucl_copy(ts5,dview,false); ts5_tex.get_texture(*(this->pair_program),"ts5_tex"); ts5_tex.bind_float(ts5,4); UCL_H_Vec cutsq_view(nparams,*(this->ucl_device), UCL_WRITE_ONLY); double cutsqmax = 0.0; for (int i=0; i(host_cutsq[i]); if (cutsqmax < host_cutsq[i]) cutsqmax = host_cutsq[i]; } cutsq.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY); ucl_copy(cutsq,cutsq_view,false); _cutshortsq = static_cast(cutsqmax); UCL_H_Vec dview_elem2param(nelements*nelements*nelements, *(this->ucl_device), UCL_WRITE_ONLY); elem2param.alloc(nelements*nelements*nelements,*(this->ucl_device), UCL_READ_ONLY); for (int i = 0; i < nelements; i++) for (int j = 0; j < nelements; j++) for (int k = 0; k < nelements; k++) { int idx = i*nelements*nelements+j*nelements+k; dview_elem2param[idx] = host_elem2param[i][j][k]; } ucl_copy(elem2param,dview_elem2param,false); UCL_H_Vec dview_map(lj_types, *(this->ucl_device), UCL_WRITE_ONLY); for (int i = 0; i < ntypes; i++) dview_map[i] = host_map[i]; map.alloc(lj_types,*(this->ucl_device), UCL_READ_ONLY); ucl_copy(map,dview_map,false); _allocated=true; this->_max_bytes=ts1.row_bytes()+ts2.row_bytes()+ts3.row_bytes()+ ts4.row_bytes()+cutsq.row_bytes()+ map.row_bytes()+elem2param.row_bytes()+_zetaij.row_bytes(); return 0; } template void TersoffMT::clear() { if (!_allocated) return; _allocated=false; ts1.clear(); ts2.clear(); ts3.clear(); ts4.clear(); ts5.clear(); cutsq.clear(); map.clear(); elem2param.clear(); _zetaij.clear(); k_zeta.clear(); this->clear_atomic(); } template double TersoffMT::host_memory_usage() const { return this->host_memory_usage_atomic()+sizeof(TersoffMod); } #define KTHREADS this->_threads_per_atom #define JTHREADS this->_threads_per_atom // --------------------------------------------------------------------------- // Calculate energies, forces, and torques // --------------------------------------------------------------------------- template void TersoffMT::loop(const bool _eflag, const bool _vflag, const int evatom) { // Compute the block size and grid size to keep all cores busy int BX=this->block_pair(); int eflag, vflag; if (_eflag) eflag=1; else eflag=0; if (_vflag) vflag=1; else vflag=0; // build the short neighbor list int ainum=this->_ainum; int nbor_pitch=this->nbor->nbor_pitch(); int GX=static_cast(ceil(static_cast(ainum)/ (BX/this->_threads_per_atom))); this->k_short_nbor.set_size(GX,BX); this->k_short_nbor.run(&this->atom->x, &cutsq, &map, &elem2param, &_nelements, &_nparams, &this->nbor->dev_nbor, &this->_nbor_data->begin(), &this->dev_short_nbor, &ainum, &nbor_pitch, &this->_threads_per_atom); // re-allocate zetaij if necessary int nall = this->_nall; if (nall*this->_max_nbors > _zetaij.cols()) { int _nmax=static_cast(static_cast(nall)*1.10); _zetaij.resize(this->_max_nbors*_nmax); } nbor_pitch=this->nbor->nbor_pitch(); GX=static_cast(ceil(static_cast(this->_ainum)/ (BX/(JTHREADS*KTHREADS)))); this->k_zeta.set_size(GX,BX); this->k_zeta.run(&this->atom->x, &ts1, &ts2, &ts3, &ts4, &ts5, &cutsq, &map, &elem2param, &_nelements, &_nparams, &_zetaij, &this->nbor->dev_nbor, &this->_nbor_data->begin(), &this->dev_short_nbor, &eflag, &this->_ainum, &nbor_pitch, &this->_threads_per_atom); ainum=this->ans->inum(); nbor_pitch=this->nbor->nbor_pitch(); GX=static_cast(ceil(static_cast(this->ans->inum())/ (BX/this->_threads_per_atom))); this->time_pair.start(); this->k_pair.set_size(GX,BX); this->k_pair.run(&this->atom->x, &ts1, &ts2, &cutsq, &map, &elem2param, &_nelements, &_nparams, &this->nbor->dev_nbor, &this->_nbor_data->begin(), &this->dev_short_nbor, &this->ans->force, &this->ans->engv, &eflag, &vflag, &ainum, &nbor_pitch, &this->_threads_per_atom); BX=this->block_size(); GX=static_cast(ceil(static_cast(this->ans->inum())/ (BX/(KTHREADS*JTHREADS)))); this->k_three_center.set_size(GX,BX); this->k_three_center.run(&this->atom->x, &ts1, &ts2, &ts4, &ts5, &cutsq, &map, &elem2param, &_nelements, &_nparams, &_zetaij, &this->nbor->dev_nbor, &this->_nbor_data->begin(), &this->dev_short_nbor, &this->ans->force, &this->ans->engv, &eflag, &vflag, &ainum, &nbor_pitch, &this->_threads_per_atom, &evatom); Answer *end_ans; #ifdef THREE_CONCURRENT end_ans=this->ans2; #else end_ans=this->ans; #endif if (evatom!=0) { this->k_three_end_vatom.set_size(GX,BX); this->k_three_end_vatom.run(&this->atom->x, &ts1, &ts2, &ts4, &ts5, &cutsq, &map, &elem2param, &_nelements, &_nparams, &_zetaij, &this->nbor->dev_nbor, &this->_nbor_data->begin(), &this->nbor->dev_ilist, &this->dev_short_nbor, &end_ans->force, &end_ans->engv, &eflag, &vflag, &ainum, &nbor_pitch, &this->_threads_per_atom, &this->_gpu_nbor); } else { this->k_three_end.set_size(GX,BX); this->k_three_end.run(&this->atom->x, &ts1, &ts2, &ts4, &ts5, &cutsq, &map, &elem2param, &_nelements, &_nparams, &_zetaij, &this->nbor->dev_nbor, &this->_nbor_data->begin(), &this->nbor->dev_ilist, &this->dev_short_nbor, &end_ans->force, &end_ans->engv, &eflag, &vflag, &ainum, &nbor_pitch, &this->_threads_per_atom, &this->_gpu_nbor); } this->time_pair.stop(); } template class TersoffMod; }