% begin ignore % % trna-ssdraw.ps: % An esl-ssdraw postscript template file for drawing % tRNA secondary structure diagrams. The input alignment % must be of consensus length (nongap RF length) of 71. % This corresponds to the Rfam 9.1 RF00005 tRNA model % (http://rfam.sanger.ac.uk/). That is, this template % file can be used with alignments generated by Infernal's % 'cmalign' program using the Rfam 9.1 tRNA CM. % % setup defaults /Helvetica findfont 8.00 scalefont setfont 0.00 0.00 0.00 1.00 setcmykcolor 1.00 setlinewidth % end ignore % begin modelname % tRNA % end modelname % begin legend % 34 -80. -30. 10 0. % end legend % begin scale 1.7 1.7 scale % end scale % begin regurgitate /Helvetica findfont 6.00 scalefont setfont 0.00 0.00 0.00 1.00 setcmykcolor (5') 164.00 400.00 moveto show (3') 192.00 408.00 moveto show 1.00 setlinewidth 0.00 0.00 0.00 1.00 setcmykcolor 165.50 238.00 188.50 238.00 newpath moveto lineto stroke 166.00 244.00 166.00 238.00 newpath moveto lineto stroke 188.00 244.00 188.00 238.00 newpath moveto lineto stroke (anticodon) 164.25 230.00 moveto show % end regurgitate % begin ignore % reset 8.0 fontsize /Helvetica findfont 8.00 scalefont setfont % end ignore % begin text positiontext (20) 124.00 297.00 moveto show (40) 194.50 287.00 moveto show (60) 211.00 354.00 moveto show % end text positiontext % begin lines positionticks 151.82 331.76 148.86 338.65 newpath moveto lineto stroke 122.05 310.19 124.69 303.17 newpath moveto lineto stroke 168.09 273.73 160.81 275.55 newpath moveto lineto stroke 186.00 289.00 193.50 289.00 newpath moveto lineto stroke 215.00 326.00 215.00 318.50 newpath moveto lineto stroke 215.00 344.00 215.00 351.50 newpath moveto lineto stroke 185.91 394.27 193.19 392.45 newpath moveto lineto stroke % end lines positionticks % begin ignore % set color to grey for bpconnect lines 0.00 0.00 0.00 0.50 setcmykcolor % end ignore % begin lines bpconnects 179.00 394.00 175.00 394.00 newpath moveto lineto stroke 179.00 386.00 175.00 386.00 newpath moveto lineto stroke 179.00 378.00 175.00 378.00 newpath moveto lineto stroke 179.00 370.00 175.00 370.00 newpath moveto lineto stroke 179.00 362.00 175.00 362.00 newpath moveto lineto stroke 179.00 354.00 175.00 354.00 newpath moveto lineto stroke 179.00 346.00 175.00 346.00 newpath moveto lineto stroke 153.00 321.00 153.00 325.00 newpath moveto lineto stroke 145.00 321.00 145.00 325.00 newpath moveto lineto stroke 137.00 321.00 137.00 325.00 newpath moveto lineto stroke 129.00 321.00 129.00 325.00 newpath moveto lineto stroke 179.00 304.00 175.00 304.00 newpath moveto lineto stroke 179.00 296.00 175.00 296.00 newpath moveto lineto stroke 179.00 288.00 175.00 288.00 newpath moveto lineto stroke 179.00 280.00 175.00 280.00 newpath moveto lineto stroke 179.00 272.00 175.00 272.00 newpath moveto lineto stroke 191.00 337.00 191.00 333.00 newpath moveto lineto stroke 199.00 337.00 199.00 333.00 newpath moveto lineto stroke 207.00 337.00 207.00 333.00 newpath moveto lineto stroke 215.00 337.00 215.00 333.00 newpath moveto lineto stroke 223.00 337.00 223.00 333.00 newpath moveto lineto stroke % end lines bpconnects % begin ignore % reset color to black 0.00 0.00 0.00 1.00 setcmykcolor % end ignore % begin text nucleotides (G) 168.00 392.00 moveto show (C) 168.00 384.00 moveto show (G) 168.00 376.00 moveto show (G) 168.00 368.00 moveto show (A) 168.00 360.00 moveto show (U) 168.00 352.00 moveto show (U) 168.00 344.00 moveto show (U) 162.00 338.00 moveto show (A) 156.00 332.00 moveto show % nucleotide 10 on next line (G) 150.00 326.00 moveto show (C) 142.00 326.00 moveto show (U) 134.00 326.00 moveto show (C) 126.00 326.00 moveto show (A) 118.00 330.00 moveto show (G) 110.00 332.00 moveto show (U) 102.00 328.00 moveto show (U) 99.00 320.00 moveto show (G) 102.00 312.00 moveto show (G) 110.00 308.00 moveto show % nucleotide 20 on next line (A) 118.00 310.00 moveto show (G) 126.00 314.00 moveto show (A) 134.00 314.00 moveto show (G) 142.00 314.00 moveto show (C) 150.00 314.00 moveto show (G) 159.00 308.00 moveto show (C) 168.00 302.00 moveto show (C) 168.00 294.00 moveto show (A) 168.00 286.00 moveto show (G) 168.00 278.00 moveto show % nucleotide 30 on next line (A) 168.00 270.00 moveto show (C) 164.00 262.00 moveto show (U) 162.00 254.00 moveto show (G) 166.00 246.00 moveto show (A) 174.00 243.00 moveto show (A) 182.00 246.00 moveto show (G) 186.00 254.00 moveto show (A) 184.00 262.00 moveto show (U) 180.00 270.00 moveto show (C) 180.00 278.00 moveto show % nucleotide 40 on next line (U) 180.00 286.00 moveto show (G) 180.00 294.00 moveto show (G) 180.00 302.00 moveto show (A) 188.00 306.00 moveto show (G) 196.00 306.00 moveto show (U) 200.00 314.00 moveto show (U) 192.00 318.00 moveto show (C) 188.00 326.00 moveto show (U) 196.00 326.00 moveto show (G) 204.00 326.00 moveto show % nucleotide 50 on next line (U) 212.00 326.00 moveto show (G) 220.00 326.00 moveto show (U) 228.00 322.00 moveto show (U) 236.00 320.00 moveto show (C) 244.00 324.00 moveto show (G) 247.00 332.00 moveto show (A) 244.00 340.00 moveto show (U) 236.00 344.00 moveto show (C) 228.00 342.00 moveto show (C) 220.00 338.00 moveto show % nucleotide 60 on next line (A) 212.00 338.00 moveto show (C) 204.00 338.00 moveto show (A) 196.00 338.00 moveto show (G) 188.00 338.00 moveto show (A) 180.00 344.00 moveto show (A) 180.00 352.00 moveto show (U) 180.00 360.00 moveto show (U) 180.00 368.00 moveto show (C) 180.00 376.00 moveto show (G) 180.00 384.00 moveto show % nucleotide 70 on next line (C) 180.00 392.00 moveto show (A) 184.00 400.00 moveto show % end text nucleotides % begin ignore showpage % end ignore