# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "libradicl"
version = "0.10.0"
authors = [
    "Avi Srivastava <avi.srivastava@nyu.edu>",
    "Hirak Sarkar <hirak_sarkar@hms.harvard.edu>",
    "Dongze He <dhe17@umd.edu>",
    "Mohsen Zakeri <mzakeri@cs.umd.edu>",
    "Noor Pratab Singh <npsingh@umd.edu>",
    "Rob Patro <rob@cs.umd.edu>",
]
build = false
include = [
    "src/*.rs",
    "examples/*.rs",
    "/Cargo.toml",
    "/README.md",
    "/LICENSE",
]
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "support library for alevin-fry"
homepage = "https://github.com/COMBINE-lab/libradicl"
documentation = "https://docs.rs/libradicl"
readme = "README.md"
keywords = [
    "single-cell",
    "preprocessing",
    "RNA-seq",
    "ATAC-seq",
    "single-nucleus",
]
categories = [
    "command-line-utilities",
    "science",
]
license-file = "LICENSE"
repository = "https://github.com/COMBINE-lab/libradicl"

[lib]
name = "libradicl"
path = "src/lib.rs"

[[example]]
name = "read_chunk_bulk"
path = "examples/read_chunk_bulk.rs"

[[example]]
name = "read_chunk_single_cell"
path = "examples/read_chunk_single_cell.rs"

[[example]]
name = "read_chunk_single_cell_atac"
path = "examples/read_chunk_single_cell_atac.rs"

[[example]]
name = "read_chunk_single_cell_parallel"
path = "examples/read_chunk_single_cell_parallel.rs"

[[example]]
name = "read_header"
path = "examples/read_header.rs"

[dependencies.ahash]
version = "0.8.11"

[dependencies.anyhow]
version = "1.0.86"

[dependencies.bio-types]
version = "1.0.3"

[dependencies.bytemuck]
version = "1.16.3"
features = ["aarch64_simd"]

[dependencies.crossbeam-queue]
version = "0.3.11"

[dependencies.dashmap]
version = "^6.0.1"

[dependencies.derivative]
version = "2.2.0"

[dependencies.itertools]
version = "0.13.0"

[dependencies.noodles]
version = "0.85.0"
features = [
    "bam",
    "sam",
]

[dependencies.num]
version = "0.4.3"

[dependencies.scroll]
version = "0.12.0"

[dependencies.serde]
version = "1.0.204"
features = ["derive"]

[dependencies.smallvec]
version = "1.13.2"

[dependencies.snap]
version = "1"

[dev-dependencies.indicatif]
version = "0.17.9"

[dev-dependencies.needletail]
version = "0.6.1"