[Benchmark] => Total.reads 305 => Time.Benchmark 62.93 ms ( 1 call, 62.93 ms/call {min62.93ms,Max62.93ms}) => Time.Alignment 53.81 ms ( 85.52 %) ( 305 calls, 176.43 us/call {min334ns,Max7.40ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.18 Kbases ( 90.27 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 0.00 bases ( 0.00 %) (samples=0,--n/a--)} => CIGAR.Insertions 19.08 Kbases ( 10.82 %) (samples=19K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 17.16 Kbases ( 9.73 %) (samples=17K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.indel.alg -a indel-wfa --check=correct" User time (seconds): 0.04 System time (seconds): 0.01 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.06 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 23296 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 5263 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 256 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 41.62 ms ( 1 call, 41.62 ms/call {min41.62ms,Max41.62ms}) => Time.Alignment 37.48 ms ( 90.06 %) ( 305 calls, 122.88 us/call {min102ns,Max4.86ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 158.32 Kbases ( 89.78 %) (samples=158K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 9.63 Kbases ( 5.46 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 10.30 Kbases ( 5.84 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 8.38 Kbases ( 4.75 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.edit.alg -a edit-wfa --check=correct" User time (seconds): 0.03 System time (seconds): 0.00 Percent of CPU this job got: 97% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.04 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 23308 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 5262 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 208 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 510.51 ms ( 1 call, 510.51 ms/call {min510.51ms,Max510.51ms}) => Time.Alignment 506.22 ms ( 99.16 %) ( 305 calls, 1.66 ms/call {min112ns,Max82.16ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.21 Kbases ( 87.45 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.33 Kbases ( 8.69 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.72 Kbases ( 4.95 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.80 Kbases ( 3.86 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.alg -a gap-affine-wfa --check=correct" User time (seconds): 0.45 System time (seconds): 0.06 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.51 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 277644 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 68891 Voluntary context switches: 1 Involuntary context switches: 8 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 2.76 s ( 1 call, 2.76 s/call {min2.76s,Max2.76s}) => Time.Alignment 2.76 s ( 99.77 %) ( 305 calls, 9.03 ms/call {min99ns,Max489.41ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.20 Kbases ( 87.45 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.33 Kbases ( 8.69 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.72 Kbases ( 4.95 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.80 Kbases ( 3.86 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine2p.alg -a gap-affine2p-wfa --check=correct" User time (seconds): 2.44 System time (seconds): 0.35 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:02.80 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 1783444 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 445311 Voluntary context switches: 1 Involuntary context switches: 11 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 235.78 ms ( 1 call, 235.78 ms/call {min235.78ms,Max235.78ms}) => Time.Alignment 231.36 ms ( 98.13 %) ( 305 calls, 758.57 us/call {min98ns,Max35.89ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 149.12 Kbases ( 84.57 %) (samples=149K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 21.77 Kbases ( 12.35 %) (samples=21K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 7.37 Kbases ( 4.18 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 5.44 Kbases ( 3.09 %) (samples=5K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p0.alg -a gap-affine-wfa --check=correct --affine-penalties=0,1,2,1" User time (seconds): 0.22 System time (seconds): 0.02 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.24 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 126132 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 30976 Voluntary context switches: 1 Involuntary context switches: 5 Swaps: 0 File system inputs: 0 File system outputs: 184 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 295.26 ms ( 1 call, 295.26 ms/call {min295.26ms,Max295.26ms}) => Time.Alignment 290.82 ms ( 98.49 %) ( 305 calls, 953.49 us/call {min119ns,Max44.24ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 155.91 Kbases ( 88.42 %) (samples=155K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 13.53 Kbases ( 7.67 %) (samples=13K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.82 Kbases ( 5.00 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.90 Kbases ( 3.91 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p1.alg -a gap-affine-wfa --check=correct --affine-penalties=0,3,1,4" User time (seconds): 0.25 System time (seconds): 0.04 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.30 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 154608 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 38097 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 696.35 ms ( 1 call, 696.35 ms/call {min696.35ms,Max696.35ms}) => Time.Alignment 691.85 ms ( 99.35 %) ( 305 calls, 2.27 ms/call {min105ns,Max108.03ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 158.52 Kbases ( 89.90 %) (samples=158K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 8.85 Kbases ( 5.02 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 10.89 Kbases ( 6.18 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 8.97 Kbases ( 5.09 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p2.alg -a gap-affine-wfa --check=correct --affine-penalties=0,5,3,2" User time (seconds): 0.61 System time (seconds): 0.09 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.70 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 367436 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 91298 Voluntary context switches: 1 Involuntary context switches: 5 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 922.46 ms ( 1 call, 922.46 ms/call {min922.46ms,Max922.46ms}) => Time.Alignment 916.99 ms ( 99.41 %) ( 305 calls, 3.01 ms/call {min99ns,Max154.92ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.13 Kbases ( 90.25 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 7.94 Kbases ( 4.50 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 11.19 Kbases ( 6.34 %) (samples=11K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 9.26 Kbases ( 5.25 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p3.alg -a gap-affine-wfa --check=correct --affine-penalties=-5,1,2,1" User time (seconds): 0.82 System time (seconds): 0.11 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.93 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 558932 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 139191 Voluntary context switches: 2 Involuntary context switches: 3 Swaps: 0 File system inputs: 0 File system outputs: 216 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 410.27 ms ( 1 call, 410.27 ms/call {min410.27ms,Max410.27ms}) => Time.Alignment 405.89 ms ( 98.93 %) ( 305 calls, 1.33 ms/call {min96ns,Max62.15ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 157.73 Kbases ( 89.45 %) (samples=157K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 10.79 Kbases ( 6.12 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 9.74 Kbases ( 5.52 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 7.82 Kbases ( 4.43 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p4.alg -a gap-affine-wfa --check=correct --affine-penalties=-2,3,1,4" User time (seconds): 0.38 System time (seconds): 0.03 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.41 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 214364 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 53032 Voluntary context switches: 1 Involuntary context switches: 15 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 1.30 s ( 1 call, 1.30 s/call {min1.30s,Max1.30s}) => Time.Alignment 1.30 s ( 99.53 %) ( 305 calls, 4.25 ms/call {min144ns,Max221.71ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.15 Kbases ( 90.25 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 7.66 Kbases ( 4.35 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 11.45 Kbases ( 6.49 %) (samples=11K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 9.53 Kbases ( 5.40 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p5.alg -a gap-affine-wfa --check=correct --affine-penalties=-3,5,3,2" User time (seconds): 1.12 System time (seconds): 0.19 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:01.32 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 827556 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 206343 Voluntary context switches: 1 Involuntary context switches: 4 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 51.12 ms ( 1 call, 51.12 ms/call {min51.12ms,Max51.12ms}) => Time.Alignment 46.92 ms ( 91.77 %) ( 305 calls, 153.83 us/call {min94ns,Max12.32ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.21 Kbases ( 87.45 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.33 Kbases ( 8.69 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.72 Kbases ( 4.95 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.80 Kbases ( 3.86 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.wfapt0.alg -a gap-affine-wfa --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1" User time (seconds): 0.03 System time (seconds): 0.01 Percent of CPU this job got: 98% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.05 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 61064 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 14699 Voluntary context switches: 1 Involuntary context switches: 1 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 405.59 ms ( 1 call, 405.59 ms/call {min405.59ms,Max405.59ms}) => Time.Alignment 401.10 ms ( 98.89 %) ( 305 calls, 1.32 ms/call {min98ns,Max61.23ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.21 Kbases ( 87.45 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.33 Kbases ( 8.69 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.72 Kbases ( 4.95 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.80 Kbases ( 3.86 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.wfapt1.alg -a gap-affine-wfa --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10" User time (seconds): 0.37 System time (seconds): 0.04 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.41 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 207612 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 51380 Voluntary context switches: 1 Involuntary context switches: 10 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 38.12 ms ( 1 call, 38.12 ms/call {min38.12ms,Max38.12ms}) => Time.Alignment 37.95 ms ( 99.56 %) ( 305 calls, 124.44 us/call {min94ns,Max3.61ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.indel.alg -a indel-wfa --wfa-score-only" User time (seconds): 0.03 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.03 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 2736 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 146 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 31.92 ms ( 1 call, 31.92 ms/call {min31.92ms,Max31.92ms}) => Time.Alignment 31.77 ms ( 99.50 %) ( 305 calls, 104.15 us/call {min82ns,Max3.03ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.edit.alg -a edit-wfa --wfa-score-only" User time (seconds): 0.03 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.03 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 2756 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 139 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 408.97 ms ( 1 call, 408.97 ms/call {min408.97ms,Max408.97ms}) => Time.Alignment 408.76 ms ( 99.95 %) ( 305 calls, 1.34 ms/call {min102ns,Max40.79ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.alg -a gap-affine-wfa --wfa-score-only" User time (seconds): 0.40 System time (seconds): 0.00 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.40 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 4288 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 597 Voluntary context switches: 1 Involuntary context switches: 17 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 2.20 s ( 1 call, 2.20 s/call {min2.20s,Max2.20s}) => Time.Alignment 2.20 s ( 99.98 %) ( 305 calls, 7.23 ms/call {min107ns,Max219.36ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine2p.alg -a gap-affine2p-wfa --wfa-score-only" User time (seconds): 2.20 System time (seconds): 0.00 Percent of CPU this job got: 98% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:02.23 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 27784 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 6457 Voluntary context switches: 2 Involuntary context switches: 10 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 180.75 ms ( 1 call, 180.75 ms/call {min180.75ms,Max180.75ms}) => Time.Alignment 180.41 ms ( 99.81 %) ( 305 calls, 591.51 us/call {min205ns,Max17.47ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p0.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,1,2,1" User time (seconds): 0.18 System time (seconds): 0.00 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.18 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3544 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 384 Voluntary context switches: 1 Involuntary context switches: 2 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 217.79 ms ( 1 call, 217.79 ms/call {min217.79ms,Max217.79ms}) => Time.Alignment 217.61 ms ( 99.91 %) ( 305 calls, 713.46 us/call {min87ns,Max21.03ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p1.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,3,1,4" User time (seconds): 0.21 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.21 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3296 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 279 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 550.00 ms ( 1 call, 550.00 ms/call {min550.00ms,Max550.00ms}) => Time.Alignment 549.79 ms ( 99.96 %) ( 305 calls, 1.80 ms/call {min101ns,Max53.26ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p2.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,5,3,2" User time (seconds): 0.55 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.55 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 4892 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 669 Voluntary context switches: 1 Involuntary context switches: 2 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 683.86 ms ( 1 call, 683.86 ms/call {min683.86ms,Max683.86ms}) => Time.Alignment 683.62 ms ( 99.97 %) ( 305 calls, 2.24 ms/call {min89ns,Max65.87ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p3.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-5,1,2,1" User time (seconds): 0.68 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.68 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 4608 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 644 Voluntary context switches: 1 Involuntary context switches: 1 Swaps: 0 File system inputs: 0 File system outputs: 16 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 310.17 ms ( 1 call, 310.17 ms/call {min310.17ms,Max310.17ms}) => Time.Alignment 309.94 ms ( 99.92 %) ( 305 calls, 1.02 ms/call {min113ns,Max29.37ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p4.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-2,3,1,4" User time (seconds): 0.31 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.31 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3552 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 398 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 980.96 ms ( 1 call, 980.96 ms/call {min980.96ms,Max980.96ms}) => Time.Alignment 980.69 ms ( 99.97 %) ( 305 calls, 3.22 ms/call {min109ns,Max94.91ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p5.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-3,5,3,2" User time (seconds): 0.97 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.98 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 6724 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 1175 Voluntary context switches: 1 Involuntary context switches: 15 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 24.99 ms ( 1 call, 24.99 ms/call {min24.99ms,Max24.99ms}) => Time.Alignment 24.82 ms ( 99.32 %) ( 305 calls, 81.38 us/call {min88ns,Max1.49ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.wfapt0.alg -a gap-affine-wfa --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1" User time (seconds): 0.02 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.02 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 2824 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 142 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 317.25 ms ( 1 call, 317.25 ms/call {min317.25ms,Max317.25ms}) => Time.Alignment 317.08 ms ( 99.94 %) ( 305 calls, 1.04 ms/call {min94ns,Max31.34ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.wfapt1.alg -a gap-affine-wfa --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10" User time (seconds): 0.31 System time (seconds): 0.00 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.31 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3836 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 450 Voluntary context switches: 1 Involuntary context switches: 13 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 64.88 ms ( 1 call, 64.88 ms/call {min64.88ms,Max64.88ms}) => Time.Alignment 59.90 ms ( 92.33 %) ( 305 calls, 196.40 us/call {min115ns,Max5.83ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.18 Kbases ( 90.27 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 0.00 bases ( 0.00 %) (samples=0,--n/a--)} => CIGAR.Insertions 19.08 Kbases ( 10.82 %) (samples=19K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 17.16 Kbases ( 9.73 %) (samples=17K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.indel.alg -a indel-wfa --wfa-memory-mode=med --check=correct" User time (seconds): 0.06 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.06 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 4092 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 493 Voluntary context switches: 1 Involuntary context switches: 19 Swaps: 0 File system inputs: 0 File system outputs: 248 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 54.78 ms ( 1 call, 54.78 ms/call {min54.78ms,Max54.78ms}) => Time.Alignment 50.28 ms ( 91.77 %) ( 305 calls, 164.84 us/call {min121ns,Max4.82ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 158.32 Kbases ( 89.78 %) (samples=158K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 9.63 Kbases ( 5.46 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 10.30 Kbases ( 5.84 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 8.38 Kbases ( 4.75 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.edit.alg -a edit-wfa --wfa-memory-mode=med --check=correct" User time (seconds): 0.05 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.05 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3876 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 457 Voluntary context switches: 1 Involuntary context switches: 16 Swaps: 0 File system inputs: 0 File system outputs: 208 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 1.14 s ( 1 call, 1.14 s/call {min1.14s,Max1.14s}) => Time.Alignment 1.14 s ( 99.60 %) ( 305 calls, 3.73 ms/call {min124ns,Max120.67ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.21 Kbases ( 87.45 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.33 Kbases ( 8.69 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.72 Kbases ( 4.95 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.80 Kbases ( 3.86 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct" User time (seconds): 1.12 System time (seconds): 0.02 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:01.14 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 72876 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 17770 Voluntary context switches: 1 Involuntary context switches: 11 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 7.81 s ( 1 call, 7.81 s/call {min7.81s,Max7.81s}) => Time.Alignment 7.81 s ( 99.94 %) ( 305 calls, 25.59 ms/call {min121ns,Max809.09ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.20 Kbases ( 87.45 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.33 Kbases ( 8.69 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.72 Kbases ( 4.95 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.80 Kbases ( 3.86 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=med --check=correct" User time (seconds): 7.74 System time (seconds): 0.08 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:07.82 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 410692 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 103124 Voluntary context switches: 1 Involuntary context switches: 55 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 472.80 ms ( 1 call, 472.80 ms/call {min472.80ms,Max472.80ms}) => Time.Alignment 468.38 ms ( 99.07 %) ( 305 calls, 1.54 ms/call {min143ns,Max49.10ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 149.12 Kbases ( 84.57 %) (samples=149K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 21.77 Kbases ( 12.35 %) (samples=21K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 7.37 Kbases ( 4.18 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 5.44 Kbases ( 3.09 %) (samples=5K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,1,2,1" User time (seconds): 0.46 System time (seconds): 0.01 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.47 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 30844 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 7236 Voluntary context switches: 1 Involuntary context switches: 7 Swaps: 0 File system inputs: 0 File system outputs: 184 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 435.09 ms ( 1 call, 435.09 ms/call {min435.09ms,Max435.09ms}) => Time.Alignment 430.68 ms ( 98.99 %) ( 305 calls, 1.41 ms/call {min147ns,Max44.14ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 155.91 Kbases ( 88.42 %) (samples=155K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 13.53 Kbases ( 7.67 %) (samples=13K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.82 Kbases ( 5.00 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.90 Kbases ( 3.91 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,3,1,4" User time (seconds): 0.42 System time (seconds): 0.01 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.43 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 32016 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 7517 Voluntary context switches: 1 Involuntary context switches: 2 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 1.32 s ( 1 call, 1.32 s/call {min1.32s,Max1.32s}) => Time.Alignment 1.32 s ( 99.65 %) ( 305 calls, 4.32 ms/call {min129ns,Max139.56ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 158.52 Kbases ( 89.90 %) (samples=158K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 8.85 Kbases ( 5.02 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 10.89 Kbases ( 6.18 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 8.97 Kbases ( 5.09 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,5,3,2" User time (seconds): 1.29 System time (seconds): 0.03 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:01.32 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 91260 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 22420 Voluntary context switches: 1 Involuntary context switches: 11 Swaps: 0 File system inputs: 0 File system outputs: 208 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 1.48 s ( 1 call, 1.48 s/call {min1.48s,Max1.48s}) => Time.Alignment 1.47 s ( 99.69 %) ( 305 calls, 4.82 ms/call {min123ns,Max149.51ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.13 Kbases ( 90.25 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 7.94 Kbases ( 4.50 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 11.19 Kbases ( 6.34 %) (samples=11K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 9.26 Kbases ( 5.25 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-5,1,2,1" User time (seconds): 1.46 System time (seconds): 0.01 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:01.47 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 60992 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 14831 Voluntary context switches: 1 Involuntary context switches: 20 Swaps: 0 File system inputs: 0 File system outputs: 208 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 747.18 ms ( 1 call, 747.18 ms/call {min747.18ms,Max747.18ms}) => Time.Alignment 742.90 ms ( 99.43 %) ( 305 calls, 2.44 ms/call {min118ns,Max75.71ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 157.73 Kbases ( 89.45 %) (samples=157K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 10.79 Kbases ( 6.12 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 9.74 Kbases ( 5.52 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 7.82 Kbases ( 4.43 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-2,3,1,4" User time (seconds): 0.73 System time (seconds): 0.01 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.74 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 44060 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 10541 Voluntary context switches: 1 Involuntary context switches: 1 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 2.23 s ( 1 call, 2.23 s/call {min2.23s,Max2.23s}) => Time.Alignment 2.22 s ( 99.79 %) ( 305 calls, 7.29 ms/call {min130ns,Max223.73ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.15 Kbases ( 90.25 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 7.66 Kbases ( 4.35 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 11.45 Kbases ( 6.49 %) (samples=11K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 9.53 Kbases ( 5.40 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-3,5,3,2" User time (seconds): 2.19 System time (seconds): 0.03 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:02.23 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 89752 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 22142 Voluntary context switches: 1 Involuntary context switches: 19 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 46.81 ms ( 1 call, 46.81 ms/call {min46.81ms,Max46.81ms}) => Time.Alignment 42.81 ms ( 91.47 %) ( 305 calls, 140.37 us/call {min113ns,Max2.77ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.21 Kbases ( 87.45 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.33 Kbases ( 8.69 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.72 Kbases ( 4.95 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.80 Kbases ( 3.86 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1" User time (seconds): 0.04 System time (seconds): 0.00 Percent of CPU this job got: 97% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.04 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3888 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 411 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 861.05 ms ( 1 call, 861.05 ms/call {min861.05ms,Max861.05ms}) => Time.Alignment 856.80 ms ( 99.51 %) ( 305 calls, 2.81 ms/call {min120ns,Max88.91ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.21 Kbases ( 87.45 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.33 Kbases ( 8.69 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.72 Kbases ( 4.95 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.80 Kbases ( 3.86 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10" User time (seconds): 0.85 System time (seconds): 0.00 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.86 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 48748 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 11744 Voluntary context switches: 1 Involuntary context switches: 2 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 58.18 ms ( 1 call, 58.18 ms/call {min58.18ms,Max58.18ms}) => Time.Alignment 53.21 ms ( 91.46 %) ( 305 calls, 174.45 us/call {min145ns,Max5.40ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.18 Kbases ( 90.27 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 0.00 bases ( 0.00 %) (samples=0,--n/a--)} => CIGAR.Insertions 19.08 Kbases ( 10.82 %) (samples=19K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 17.16 Kbases ( 9.73 %) (samples=17K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.indel.alg -a indel-wfa --wfa-memory-mode=ultralow --check=correct" User time (seconds): 0.05 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.05 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 4028 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 448 Voluntary context switches: 1 Involuntary context switches: 5 Swaps: 0 File system inputs: 0 File system outputs: 248 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 51.51 ms ( 1 call, 51.51 ms/call {min51.51ms,Max51.51ms}) => Time.Alignment 47.15 ms ( 91.55 %) ( 305 calls, 154.60 us/call {min160ns,Max4.40ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 158.32 Kbases ( 89.78 %) (samples=158K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 9.63 Kbases ( 5.46 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 10.30 Kbases ( 5.84 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 8.38 Kbases ( 4.75 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.edit.alg -a edit-wfa --wfa-memory-mode=ultralow --check=correct" User time (seconds): 0.05 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.05 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3800 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 389 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 216 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 537.11 ms ( 1 call, 537.11 ms/call {min537.11ms,Max537.11ms}) => Time.Alignment 532.81 ms ( 99.20 %) ( 305 calls, 1.75 ms/call {min175ns,Max52.59ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.19 Kbases ( 87.44 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.35 Kbases ( 8.71 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.71 Kbases ( 4.94 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.79 Kbases ( 3.85 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct" User time (seconds): 0.53 System time (seconds): 0.00 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.53 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 5996 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 934 Voluntary context switches: 1 Involuntary context switches: 2 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 3.80 s ( 1 call, 3.80 s/call {min3.80s,Max3.80s}) => Time.Alignment 3.80 s ( 99.87 %) ( 305 calls, 12.45 ms/call {min146ns,Max382.68ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.19 Kbases ( 87.44 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.35 Kbases ( 8.71 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.71 Kbases ( 4.94 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.79 Kbases ( 3.85 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=ultralow --check=correct" User time (seconds): 3.79 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:03.80 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 40044 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 9465 Voluntary context switches: 1 Involuntary context switches: 17 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 229.51 ms ( 1 call, 229.51 ms/call {min229.51ms,Max229.51ms}) => Time.Alignment 225.17 ms ( 98.11 %) ( 305 calls, 738.26 us/call {min137ns,Max22.00ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 149.10 Kbases ( 84.56 %) (samples=149K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 21.79 Kbases ( 12.36 %) (samples=21K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 7.36 Kbases ( 4.18 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 5.44 Kbases ( 3.09 %) (samples=5K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,1,2,1" User time (seconds): 0.23 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.23 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 6260 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 998 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 306.72 ms ( 1 call, 306.72 ms/call {min306.72ms,Max306.72ms}) => Time.Alignment 302.07 ms ( 98.48 %) ( 305 calls, 990.40 us/call {min158ns,Max29.57ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 155.91 Kbases ( 88.42 %) (samples=155K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 13.53 Kbases ( 7.67 %) (samples=13K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.82 Kbases ( 5.00 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.89 Kbases ( 3.91 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,3,1,4" User time (seconds): 0.29 System time (seconds): 0.00 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.30 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 5988 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 970 Voluntary context switches: 1 Involuntary context switches: 4 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 752.36 ms ( 1 call, 752.36 ms/call {min752.36ms,Max752.36ms}) => Time.Alignment 747.52 ms ( 99.36 %) ( 305 calls, 2.45 ms/call {min141ns,Max82.32ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 158.52 Kbases ( 89.90 %) (samples=158K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 8.85 Kbases ( 5.02 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 10.89 Kbases ( 6.18 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 8.97 Kbases ( 5.09 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,5,3,2" User time (seconds): 0.75 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.75 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 7568 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 1388 Voluntary context switches: 1 Involuntary context switches: 7 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 986.80 ms ( 1 call, 986.80 ms/call {min986.80ms,Max986.80ms}) => Time.Alignment 982.10 ms ( 99.52 %) ( 305 calls, 3.22 ms/call {min134ns,Max96.35ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.13 Kbases ( 90.25 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 7.94 Kbases ( 4.50 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 11.19 Kbases ( 6.34 %) (samples=11K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 9.26 Kbases ( 5.25 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-5,1,2,1" User time (seconds): 0.98 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.98 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 10896 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 2216 Voluntary context switches: 1 Involuntary context switches: 13 Swaps: 0 File system inputs: 0 File system outputs: 208 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 458.93 ms ( 1 call, 458.93 ms/call {min458.93ms,Max458.93ms}) => Time.Alignment 454.22 ms ( 98.97 %) ( 305 calls, 1.49 ms/call {min165ns,Max41.09ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 157.73 Kbases ( 89.45 %) (samples=157K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 10.79 Kbases ( 6.12 %) (samples=10K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 9.74 Kbases ( 5.52 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 7.81 Kbases ( 4.43 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-2,3,1,4" User time (seconds): 0.45 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.45 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 6508 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 1098 Voluntary context switches: 1 Involuntary context switches: 19 Swaps: 0 File system inputs: 0 File system outputs: 208 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 1.44 s ( 1 call, 1.44 s/call {min1.44s,Max1.44s}) => Time.Alignment 1.44 s ( 99.65 %) ( 305 calls, 4.72 ms/call {min160ns,Max132.77ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 159.15 Kbases ( 90.25 %) (samples=159K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 7.66 Kbases ( 4.35 %) (samples=7K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 11.45 Kbases ( 6.49 %) (samples=11K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 9.53 Kbases ( 5.40 %) (samples=9K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-3,5,3,2" User time (seconds): 1.43 System time (seconds): 0.01 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:01.44 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 12848 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 2670 Voluntary context switches: 1 Involuntary context switches: 15 Swaps: 0 File system inputs: 0 File system outputs: 200 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 137.45 ms ( 1 call, 137.45 ms/call {min137.45ms,Max137.45ms}) => Time.Alignment 133.10 ms ( 96.83 %) ( 305 calls, 436.38 us/call {min160ns,Max10.71ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.19 Kbases ( 87.44 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.35 Kbases ( 8.71 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.71 Kbases ( 4.94 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.79 Kbases ( 3.85 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1" User time (seconds): 0.13 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.13 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 4524 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 581 Voluntary context switches: 1 Involuntary context switches: 1 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 432.60 ms ( 1 call, 432.60 ms/call {min432.60ms,Max432.60ms}) => Time.Alignment 428.21 ms ( 98.98 %) ( 305 calls, 1.40 ms/call {min149ns,Max41.34ms}) [Accuracy] => Alignments.Correct 305.00 alg (100.00 %) (samples=305{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Breakdown => CIGAR.Matches 154.19 Kbases ( 87.44 %) (samples=154K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Mismatches 15.35 Kbases ( 8.71 %) (samples=15K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Insertions 8.71 Kbases ( 4.94 %) (samples=8K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} => CIGAR.Deletions 6.79 Kbases ( 3.85 %) (samples=6K{mean1.00,min1.00,Max1.00,Var0.00,StdDev0.00)} Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10" User time (seconds): 0.43 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.43 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 5460 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 812 Voluntary context switches: 1 Involuntary context switches: 12 Swaps: 0 File system inputs: 0 File system outputs: 192 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 25.80 ms ( 1 call, 25.80 ms/call {min25.80ms,Max25.80ms}) => Time.Alignment 25.60 ms ( 99.22 %) ( 305 calls, 83.92 us/call {min149ns,Max2.38ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.indel.alg -a indel-wfa --wfa-memory-mode=ultralow --wfa-score-only" User time (seconds): 0.02 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.02 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 2852 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 173 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 23.43 ms ( 1 call, 23.43 ms/call {min23.43ms,Max23.43ms}) => Time.Alignment 23.22 ms ( 99.13 %) ( 305 calls, 76.14 us/call {min150ns,Max2.34ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.edit.alg -a edit-wfa --wfa-memory-mode=ultralow --wfa-score-only" User time (seconds): 0.02 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.02 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 2860 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 170 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 254.94 ms ( 1 call, 254.94 ms/call {min254.94ms,Max254.94ms}) => Time.Alignment 254.73 ms ( 99.92 %) ( 305 calls, 835.17 us/call {min148ns,Max24.90ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only" User time (seconds): 0.25 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.25 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 4144 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 548 Voluntary context switches: 1 Involuntary context switches: 2 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 1.55 s ( 1 call, 1.55 s/call {min1.55s,Max1.55s}) => Time.Alignment 1.55 s ( 99.98 %) ( 305 calls, 5.09 ms/call {min167ns,Max148.81ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=ultralow --wfa-score-only" User time (seconds): 1.54 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:01.55 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 34908 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 8229 Voluntary context switches: 1 Involuntary context switches: 11 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 110.87 ms ( 1 call, 110.87 ms/call {min110.87ms,Max110.87ms}) => Time.Alignment 110.60 ms ( 99.75 %) ( 305 calls, 362.62 us/call {min220ns,Max11.08ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,1,2,1" User time (seconds): 0.11 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.11 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3672 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 364 Voluntary context switches: 1 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 142.28 ms ( 1 call, 142.28 ms/call {min142.28ms,Max142.28ms}) => Time.Alignment 142.02 ms ( 99.81 %) ( 305 calls, 465.63 us/call {min170ns,Max15.07ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,3,1,4" User time (seconds): 0.14 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.14 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3432 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 334 Voluntary context switches: 1 Involuntary context switches: 1 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 341.83 ms ( 1 call, 341.83 ms/call {min341.83ms,Max341.83ms}) => Time.Alignment 341.57 ms ( 99.92 %) ( 305 calls, 1.12 ms/call {min153ns,Max32.75ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,5,3,2" User time (seconds): 0.34 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.34 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 4768 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 645 Voluntary context switches: 1 Involuntary context switches: 2 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 407.07 ms ( 1 call, 407.07 ms/call {min407.07ms,Max407.07ms}) => Time.Alignment 406.82 ms ( 99.94 %) ( 305 calls, 1.33 ms/call {min171ns,Max37.66ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-5,1,2,1" User time (seconds): 0.40 System time (seconds): 0.00 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.40 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 5180 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 808 Voluntary context switches: 1 Involuntary context switches: 6 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 193.36 ms ( 1 call, 193.36 ms/call {min193.36ms,Max193.36ms}) => Time.Alignment 193.15 ms ( 99.89 %) ( 305 calls, 633.26 us/call {min167ns,Max17.63ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-2,3,1,4" User time (seconds): 0.19 System time (seconds): 0.00 Percent of CPU this job got: 99% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.19 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3476 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 363 Voluntary context switches: 1 Involuntary context switches: 2 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 606.52 ms ( 1 call, 606.52 ms/call {min606.52ms,Max606.52ms}) => Time.Alignment 606.31 ms ( 99.97 %) ( 305 calls, 1.99 ms/call {min159ns,Max56.89ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-3,5,3,2" User time (seconds): 0.60 System time (seconds): 0.00 Percent of CPU this job got: 95% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.63 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 6080 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 1004 Voluntary context switches: 2 Involuntary context switches: 0 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 35.29 ms ( 1 call, 35.29 ms/call {min35.29ms,Max35.29ms}) => Time.Alignment 34.89 ms ( 98.85 %) ( 305 calls, 114.39 us/call {min472ns,Max1.69ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1" User time (seconds): 0.03 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.03 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 2964 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 192 Voluntary context switches: 1 Involuntary context switches: 1 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0 [Benchmark] => Total.reads 305 => Time.Benchmark 195.20 ms ( 1 call, 195.20 ms/call {min195.20ms,Max195.20ms}) => Time.Alignment 195.06 ms ( 99.92 %) ( 305 calls, 639.53 us/call {min143ns,Max18.89ms}) Command being timed: "/scratch/workspace-wf/WFA2.dev/bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10" User time (seconds): 0.19 System time (seconds): 0.00 Percent of CPU this job got: 100% Elapsed (wall clock) time (h:mm:ss or m:ss): 0:00.19 Average shared text size (kbytes): 0 Average unshared data size (kbytes): 0 Average stack size (kbytes): 0 Average total size (kbytes): 0 Maximum resident set size (kbytes): 3668 Average resident set size (kbytes): 0 Major (requiring I/O) page faults: 0 Minor (reclaiming a frame) page faults: 424 Voluntary context switches: 1 Involuntary context switches: 4 Swaps: 0 File system inputs: 0 File system outputs: 8 Socket messages sent: 0 Socket messages received: 0 Signals delivered: 0 Page size (bytes): 4096 Exit status: 0