/* * The MIT License * * Wavefront Alignment Algorithms * Copyright (c) 2017 by Santiago Marco-Sola * * This file is part of Wavefront Alignment Algorithms. * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in all * copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE * SOFTWARE. * * PROJECT: Wavefront Alignment Algorithms * AUTHOR(S): Santiago Marco-Sola * DESCRIPTION: WFA module to check for the termination of an alignment */ #ifndef WAVEFRONT_TERMINATION_H_ #define WAVEFRONT_TERMINATION_H_ #include "wavefront_aligner.h" /* * Necessary condition for ends-free termination */ #define WF_TERMINATION_ENDSFREE(h,v) ((h >= text_length) || (v >= pattern_length)) /* * Detect alignment termination (end of alignment) */ bool wavefront_termination_end2end( wavefront_aligner_t* const wf_aligner, wavefront_t* const mwavefront, const int score, const int score_mod); bool wavefront_termination_endsfree( wavefront_aligner_t* const wf_aligner, wavefront_t* const mwavefront, const int score, const int k, const wf_offset_t offset); #endif /* WAVEFRONT_TERMINATION_H_ */