Index of /src/light_phylogeny-2.4.3/examples/


../
alexia/                                            22-Oct-2024 04:02                   -
test1/                                             22-Oct-2024 04:02                   -
test1_mult_parasite/                               22-Oct-2024 04:02                   -
test2/                                             22-Oct-2024 04:02                   -
test3/                                             22-Oct-2024 04:02                   -
test4/                                             22-Oct-2024 04:02                   -
test5/                                             22-Oct-2024 04:02                   -
ENSGT00390000003602.xml                            24-Jul-2006 01:21              772114
FAM000297_reconciliated.recphylo                   24-Jul-2006 01:21               41196
FAM000297_reconciliated_BL.recphylo                24-Jul-2006 01:21               42929
FAM000667_reconciliated.recphylo                   24-Jul-2006 01:21               13557
FAM000696_reconciliated.recphylo                   24-Jul-2006 01:21               49186
FAM000715_reconciliated_2genes.recphylo            24-Jul-2006 01:21               21222
FAM036542_gene.xml                                 24-Jul-2006 01:21                4143
apaf.xml                                           24-Jul-2006 01:21               40636
apaf_name.xml                                      24-Jul-2006 01:21               41790
bcl_2.xml                                          24-Jul-2006 01:21              113563
build_tree.rs                                      24-Jul-2006 01:21                2207
concat.xml                                         24-Jul-2006 01:21              316548
ex2comp.recphyloxml                                24-Jul-2006 01:21                1400
ex3comp.recphyloxml                                24-Jul-2006 01:21                1622
ex4comp.recphyloxml                                24-Jul-2006 01:21                2784
ex5comp.recphyloxml                                24-Jul-2006 01:21                3006
ex6comp.recphyloxml                                24-Jul-2006 01:21                3230
ex7comp.recphyloxml                                24-Jul-2006 01:21                3453
ex8comp.recphyloxml                                24-Jul-2006 01:21                3677
example_dupli.recphylo                             24-Jul-2006 01:21                2103
example_obsolete_specloss.xml                      24-Jul-2006 01:21                8537
file_bug.recphylo                                  24-Jul-2006 01:21               13584
free_living_reconciliated.recphylo                 24-Jul-2006 01:21               13583
free_living_reconciliated_2.recphylo               24-Jul-2006 01:21                7077
free_living_reconciliated_3.recphylo               24-Jul-2006 01:21               13598
free_living_reconciliated_double.recphylo          24-Jul-2006 01:21               23890
free_living_reconciliated_quadruple.recphylo       24-Jul-2006 01:21               44504
gene_parasite.recphylo                             24-Jul-2006 01:21                2422
gene_parasite_page2.recphylo                       24-Jul-2006 01:21                8869
gene_parasite_page4.recphylo                       24-Jul-2006 01:21                1775
gene_tree_HBG011000.newick_recs.recphylo           24-Jul-2006 01:21               67961
hote_parasite_page2.recphylo                       24-Jul-2006 01:21                9183
hote_parasite_page4.recphylo                       24-Jul-2006 01:21                1109
hote_parasite_page4_BL.recphylo                    24-Jul-2006 01:21                1635
hote_parasite_page4_BL_2.recphylo                  24-Jul-2006 01:21                4796
hote_parasite_page4_BL_3.recphylo                  24-Jul-2006 01:21                4796
hybrid.recphylo                                    24-Jul-2006 01:21                7150
hybrid6.recphylo                                   24-Jul-2006 01:21                5762
lca.rs                                             24-Jul-2006 01:21                1840
lca_2.rs                                           24-Jul-2006 01:21                1031
list_BL.txt                                        24-Jul-2006 01:21                  66
modify_tree.rs                                     24-Jul-2006 01:21                3506
newick.220.txt                                     24-Jul-2006 01:21                 939
newick.A4.txt                                      24-Jul-2006 01:21                 148
newick.txt                                         24-Jul-2006 01:21                6199
read_hybrid.rs                                     24-Jul-2006 01:21                1991
read_newick.rs                                     24-Jul-2006 01:21                5078
read_newick_bug.rs                                 24-Jul-2006 01:21                 483
read_phyloxml.rs                                   24-Jul-2006 01:21                6296
read_phyloxml_bug.rs                               24-Jul-2006 01:21                 472
read_phyloxml_stroke_thickness.rs                  24-Jul-2006 01:21                2028
read_phyloxml_tidy.rs                              24-Jul-2006 01:21                2627
read_phyloxml_tidy_virus.rs                        24-Jul-2006 01:21                4817
read_recphyloxml.rs                                24-Jul-2006 01:21               18660
read_recphyloxml_2.rs                              24-Jul-2006 01:21                4909
read_recphyloxml_3.rs                              24-Jul-2006 01:21                6824
read_recphyloxml_4.rs                              24-Jul-2006 01:21                3575
read_recphyloxml_big.rs                            24-Jul-2006 01:21                2778
read_recphyloxml_big_2.rs                          24-Jul-2006 01:21                1589
read_recphyloxml_bug.rs                            24-Jul-2006 01:21                 906
read_recphyloxml_copie.rs                          24-Jul-2006 01:21                1356
read_recphyloxml_free_living.rs                    24-Jul-2006 01:21                1005
read_recphyloxml_free_living_2.rs                  24-Jul-2006 01:21                1017
read_recphyloxml_free_living_3.rs                  24-Jul-2006 01:21                1017
read_recphyloxml_free_living_double.rs             24-Jul-2006 01:21                1776
read_recphyloxml_free_living_quadruple.rs          24-Jul-2006 01:21                1035
read_recphyloxml_multi.rs                          24-Jul-2006 01:21                7140
read_recphyloxml_obsolete.rs                       24-Jul-2006 01:21                1799
read_recphyloxml_prune.rs                          24-Jul-2006 01:21                 923
read_recphyloxml_specloss.rs                       24-Jul-2006 01:21                1001
read_recphyloxml_stroke_thickness.rs               24-Jul-2006 01:21                6361
read_recphyloxml_switch.rs                         24-Jul-2006 01:21                1833
read_recphyloxml_thickness.rs                      24-Jul-2006 01:21                6087
read_recphyloxml_thickness_2.rs                    24-Jul-2006 01:21                4105
read_recphyloxml_thirdlevel_1.rs                   24-Jul-2006 01:21                9274
read_recphyloxml_thirdlevel_1_midist.rs            24-Jul-2006 01:21                9303
read_recphyloxml_thirdlevel_2.rs                   24-Jul-2006 01:21                9322
read_recphyloxml_thirdlevel_3.rs                   24-Jul-2006 01:21                9278
read_recphyloxml_thirdlevel_4.rs                   24-Jul-2006 01:21                9869
read_recphyloxml_thirdlevel_4_landscape.rs         24-Jul-2006 01:21                9897
read_recphyloxml_thirdlevel_5.rs                   24-Jul-2006 01:21                9165
read_recphyloxml_thirdlevel_6.rs                   24-Jul-2006 01:21                9205
read_recphyloxml_thirdlevel_alex.rs                24-Jul-2006 01:21                9528
read_recphyloxml_thirdlevel_bug.rs                 24-Jul-2006 01:21                9250
read_recphyloxml_thirdlevel_fl.rs                  24-Jul-2006 01:21                9504
read_recphyloxml_thirdlevel_stroke.rs              24-Jul-2006 01:21                9449
read_recphyloxml_tidyspecies.rs                    24-Jul-2006 01:21                4406
read_recphyloxml_width_height.rs                   24-Jul-2006 01:21                4034
read_reticulat_recphylo.rs                         24-Jul-2006 01:21                1181
read_reticulat_recphylo_big.rs                     24-Jul-2006 01:21                1804
read_reticulat_recphylo_big_2.rs                   24-Jul-2006 01:21                1269
read_reticulat_recphylo_big_3.rs                   24-Jul-2006 01:21                1275
rec0.1.recphyloxml                                 24-Jul-2006 01:21               30942
rec0.2.recphyloxml                                 24-Jul-2006 01:21               32480
rec0.bug.recphyloxml                               24-Jul-2006 01:21               71192
rec0.recphyloxml                                   24-Jul-2006 01:21               93309
rec0.simple.recphyloxml                            24-Jul-2006 01:21               30942
rec0mult.recphyloxml                               24-Jul-2006 01:21               76954
rec0upper.bug.recphyloxml                          24-Jul-2006 01:21               28514
rec0upper.recphyloxml                              24-Jul-2006 01:21                2493
recgs_dtl.recphyloxml                              24-Jul-2006 01:21                6678
recgs_mult_host_dtl.recphyloxml                    24-Jul-2006 01:21                5506
rechp_dtl.recphyloxml                              24-Jul-2006 01:21                4502
reti.recphylo                                      24-Jul-2006 01:21                2488
reti2.recphylo                                     24-Jul-2006 01:21                3994
some_hybridation_example.rs                        24-Jul-2006 01:21                7651
test_10genes.recphylo                              24-Jul-2006 01:21              131220
test_5genes.recphylo                               24-Jul-2006 01:21               67248
test_bckg_color.rs                                 24-Jul-2006 01:21                3013
test_colors.rs                                     24-Jul-2006 01:21                1898
test_multicol.rs                                   24-Jul-2006 01:21                5022
toyrec.xml                                         24-Jul-2006 01:21               11856
virus.nhx                                          24-Jul-2006 01:21                5481